PRJEB1986: zebrafish developmental stages transcriptome
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
znf740b | dr11_v1_chr23_-_36418708_36418708 | -0.73 | 4.3e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_+_6954984 Show fit | 8.90 |
ENSDART00000145610
|
si:ch211-255g12.6 |
|
chr25_-_18470695 Show fit | 3.76 |
ENSDART00000034377
|
carboxypeptidase A5 |
|
chr21_+_25660613 Show fit | 3.32 |
ENSDART00000134017
|
si:dkey-17e16.15 |
|
chr6_+_38381957 Show fit | 2.80 |
ENSDART00000087300
|
gamma-aminobutyric acid (GABA) A receptor, beta 3 |
|
chr12_+_13244149 Show fit | 2.78 |
ENSDART00000186984
ENSDART00000105896 |
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like |
|
chr16_-_8280885 Show fit | 2.36 |
ENSDART00000129068
|
ectonucleoside triphosphate diphosphohydrolase 3 |
|
chr12_-_4540564 Show fit | 2.32 |
ENSDART00000106566
|
|
|
chr3_-_1190132 Show fit | 2.24 |
ENSDART00000149709
|
single-pass membrane protein with aspartate-rich tail 1a |
|
chr9_+_13714379 Show fit | 2.18 |
ENSDART00000017593
ENSDART00000145503 |
transmembrane protein 237a |
|
chr11_-_24191928 Show fit | 2.15 |
ENSDART00000136827
|
SRY (sex determining region Y)-box 12 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.2 | GO:1902476 | chloride transmembrane transport(GO:1902476) |
0.0 | 4.0 | GO:0070588 | calcium ion transmembrane transport(GO:0070588) |
0.1 | 3.2 | GO:0017144 | drug metabolic process(GO:0017144) drug catabolic process(GO:0042737) exogenous drug catabolic process(GO:0042738) |
0.1 | 2.4 | GO:0009134 | nucleoside diphosphate catabolic process(GO:0009134) |
0.1 | 2.4 | GO:0055064 | chloride ion homeostasis(GO:0055064) |
0.2 | 2.3 | GO:0051127 | positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601) |
0.1 | 2.3 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.4 | 2.1 | GO:0050996 | positive regulation of lipid catabolic process(GO:0050996) |
0.1 | 2.0 | GO:0030537 | larval locomotory behavior(GO:0008345) larval behavior(GO:0030537) |
0.0 | 2.0 | GO:0007098 | centrosome cycle(GO:0007098) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.2 | GO:1902710 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.0 | 2.8 | GO:0045177 | apical part of cell(GO:0045177) |
0.1 | 2.6 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
0.2 | 2.2 | GO:1990246 | uniplex complex(GO:1990246) |
0.1 | 2.2 | GO:0035869 | ciliary transition zone(GO:0035869) |
0.0 | 2.1 | GO:0005884 | actin filament(GO:0005884) |
0.3 | 1.9 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
0.4 | 1.8 | GO:0042584 | chromaffin granule membrane(GO:0042584) |
0.1 | 1.8 | GO:0031209 | SCAR complex(GO:0031209) |
0.1 | 0.9 | GO:0090533 | sodium:potassium-exchanging ATPase complex(GO:0005890) cation-transporting ATPase complex(GO:0090533) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.2 | GO:0004890 | GABA-A receptor activity(GO:0004890) |
0.1 | 3.8 | GO:0004181 | metallocarboxypeptidase activity(GO:0004181) |
0.1 | 3.3 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.2 | 2.6 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
0.1 | 2.4 | GO:0045134 | guanosine-diphosphatase activity(GO:0004382) uridine-diphosphatase activity(GO:0045134) |
0.0 | 2.2 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.7 | 2.1 | GO:0070186 | growth hormone receptor binding(GO:0005131) growth hormone activity(GO:0070186) |
0.1 | 2.0 | GO:0005080 | protein kinase C binding(GO:0005080) |
0.0 | 2.0 | GO:0015293 | symporter activity(GO:0015293) |
0.0 | 1.9 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.1 | 1.2 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.1 | 0.7 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
0.0 | 0.4 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.0 | 0.4 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 0.2 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
0.0 | 0.2 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.0 | 0.2 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.5 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.2 | 2.1 | REACTOME SYNTHESIS SECRETION AND DEACYLATION OF GHRELIN | Genes involved in Synthesis, Secretion, and Deacylation of Ghrelin |
0.1 | 1.5 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.1 | 0.9 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |
0.1 | 0.9 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.0 | 0.9 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.1 | 0.8 | REACTOME DSCAM INTERACTIONS | Genes involved in DSCAM interactions |
0.1 | 0.8 | REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN | Genes involved in Platelet Adhesion to exposed collagen |
0.1 | 0.8 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.1 | 0.8 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |