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PRJNA195909:zebrafish embryo and larva development

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Results for foxg1a+foxg1c+foxg1d

Z-value: 0.80

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Transcription factors associated with foxg1a+foxg1c+foxg1d

Gene Symbol Gene ID Gene Info
foxg1c
ENSDARG00000068380 forkhead box G1c
foxg1d
ENSDARG00000070053 forkhead box G1d
foxg1a
ENSDARG00000070769 forkhead box G1a
foxg1c
ENSDARG00000114414 forkhead box G1c

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
foxg1cdr11_v1_chr18_-_40901707_409017070.817.5e-03Click!
foxg1ddr11_v1_chr13_+_255067_2550670.732.5e-02Click!
foxg1adr11_v1_chr17_-_29119362_291193620.531.4e-01Click!

Activity profile of foxg1a+foxg1c+foxg1d motif

Sorted Z-values of foxg1a+foxg1c+foxg1d motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr18_+_18104235 1.17 ENSDART00000145342
cbln1
cerebellin 1 precursor
chr18_-_38087875 0.95 ENSDART00000111301
luzp2
leucine zipper protein 2
chr6_-_20952187 0.91 ENSDART00000074327
igfbp2a
insulin-like growth factor binding protein 2a
chr15_-_19250543 0.89 ENSDART00000092705
ENSDART00000138895
igsf9ba
immunoglobulin superfamily, member 9Ba
chr18_-_38088099 0.76 ENSDART00000146120
luzp2
leucine zipper protein 2
chr20_+_38032143 0.76 ENSDART00000032161
galnt14
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)
chr9_+_2002701 0.67 ENSDART00000082329
evx2
even-skipped homeobox 2
chr23_+_5470967 0.64 ENSDART00000110522
ENSDART00000149050
tulp1a
tubby like protein 1a
chr14_-_2361692 0.53 ENSDART00000167696
PCDHGC3 (1 of many)
si:ch73-233f7.4
chr3_-_15264698 0.53 ENSDART00000111948
ENSDART00000142594
sez6l2
seizure related 6 homolog (mouse)-like 2
chr18_+_16246806 0.49 ENSDART00000142584
alx1
ALX homeobox 1
chr21_+_43669943 0.47 ENSDART00000136025
tmlhe
trimethyllysine hydroxylase, epsilon
chr20_+_34320635 0.46 ENSDART00000153207
ivns1abpa
influenza virus NS1A binding protein a
chr7_+_20656942 0.42 ENSDART00000100898
tnfsf12
TNF superfamily member 12
chr19_-_30904590 0.42 ENSDART00000137633
si:ch211-194e15.5
si:ch211-194e15.5
chr2_+_30721466 0.40 ENSDART00000128982
si:dkey-94e7.2
si:dkey-94e7.2
chr17_-_24916889 0.40 ENSDART00000156157
si:ch211-195o20.7
si:ch211-195o20.7
chr14_-_30452218 0.37 ENSDART00000011480
zdhhc2
zinc finger, DHHC-type containing 2
chr11_-_42554290 0.37 ENSDART00000130573
atp6ap1la
ATPase H+ transporting accessory protein 1 like a
chr20_+_28245164 0.37 ENSDART00000103320
dll4
delta-like 4 (Drosophila)
chr2_+_30721070 0.36 ENSDART00000099052
si:dkey-94e7.2
si:dkey-94e7.2
chr11_-_26666501 0.36 ENSDART00000188067
ENSDART00000111539
efcc1
EF-hand and coiled-coil domain containing 1
chr1_+_59090743 0.35 ENSDART00000100199
mfap4
microfibril associated protein 4
chr24_+_11106402 0.35 ENSDART00000146697
prlh2
prolactin releasing hormone 2
chr5_-_21044693 0.35 ENSDART00000140298
si:dkey-13n15.2
si:dkey-13n15.2
chr4_+_3287819 0.35 ENSDART00000168633
CABZ01085700.1

chr24_+_19591893 0.35 ENSDART00000152026
slco5a1a
solute carrier organic anion transporter family member 5A1a
chr12_+_39685485 0.35 ENSDART00000163403
LO017650.1

chr4_+_3980247 0.33 ENSDART00000049194
gpr37b
G protein-coupled receptor 37b
chr18_-_5509616 0.32 ENSDART00000142945
bloc1s6
biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
chr23_+_36095260 0.31 ENSDART00000127384
hoxc9a
homeobox C9a
chr5_-_38122126 0.27 ENSDART00000141791
ENSDART00000170528
si:ch211-284e13.6
si:ch211-284e13.6
chr1_+_59090583 0.24 ENSDART00000150658
mfap4
microfibril associated protein 4
chr17_-_15657029 0.24 ENSDART00000153925
fut9a
fucosyltransferase 9a
chr24_+_29382109 0.23 ENSDART00000184620
ENSDART00000188414
ENSDART00000186132
ENSDART00000191489
ntng1a
netrin g1a
chr8_+_25616946 0.22 ENSDART00000133983
slc38a5a
solute carrier family 38, member 5a
chr5_-_38121612 0.20 ENSDART00000159543
si:ch211-284e13.6
si:ch211-284e13.6
chr22_-_38543630 0.20 ENSDART00000172029
si:ch211-126j24.1
si:ch211-126j24.1
chr20_-_14665002 0.19 ENSDART00000152816
scrn2
secernin 2
chr20_+_28245587 0.19 ENSDART00000191703
dll4
delta-like 4 (Drosophila)
chr6_+_36942966 0.18 ENSDART00000028895
negr1
neuronal growth regulator 1
chr25_-_35664817 0.16 ENSDART00000148718
lrrk2
leucine-rich repeat kinase 2
chr7_-_8881514 0.15 ENSDART00000081620
vax2
ventral anterior homeobox 2
chr3_+_23248704 0.15 ENSDART00000156032
ppp1r9ba
protein phosphatase 1, regulatory subunit 9Ba
chr1_-_50710468 0.15 ENSDART00000080389
fam13a
family with sequence similarity 13, member A
chr15_-_30816370 0.14 ENSDART00000142982
ENSDART00000050649
ENSDART00000136901
ENSDART00000100194
msi2b
musashi RNA-binding protein 2b
chr1_+_45754868 0.14 ENSDART00000084512
pkn1a
protein kinase N1a
chr24_+_18286427 0.13 ENSDART00000055443
tpk1
thiamin pyrophosphokinase 1
chr15_-_23522653 0.13 ENSDART00000144685
hmbsb
hydroxymethylbilane synthase, b
chr18_-_34171280 0.12 ENSDART00000122321
slc33a1
solute carrier family 33 (acetyl-CoA transporter), member 1
chr3_+_53240562 0.12 ENSDART00000031234
stxbp2
syntaxin binding protein 2
chr5_+_9360394 0.11 ENSDART00000124642
FP236810.2

chr2_-_30721502 0.11 ENSDART00000132389
si:dkey-94e7.1
si:dkey-94e7.1
chr18_-_34170918 0.10 ENSDART00000015079
slc33a1
solute carrier family 33 (acetyl-CoA transporter), member 1
chr15_-_23523222 0.10 ENSDART00000078396
hmbsb
hydroxymethylbilane synthase, b
chr16_+_41570653 0.10 ENSDART00000102665
aste1a
asteroid homolog 1a
chr24_+_29381946 0.09 ENSDART00000189551
ntng1a
netrin g1a
chr17_+_31719034 0.09 ENSDART00000077077
nubpl
nucleotide binding protein-like
chr8_-_27656765 0.08 ENSDART00000078491
mov10b.2
Moloney leukemia virus 10b, tandem duplicate 2
chr11_-_42739148 0.08 ENSDART00000183584
CU459094.2

chr23_+_5977965 0.07 ENSDART00000115403
ENSDART00000183147
NAV1 (1 of many)
neuron navigator 1
chr4_-_8902406 0.07 ENSDART00000192962
mpped1
metallophosphoesterase domain containing 1
chr7_+_35268880 0.06 ENSDART00000182231
dpep2
dipeptidase 2
chr8_-_51599036 0.06 ENSDART00000175779
ENSDART00000134614
ENSDART00000098263
kctd9a
potassium channel tetramerization domain containing 9a
chr19_-_19025998 0.06 ENSDART00000186156
ENSDART00000163359
ENSDART00000167951
dync1li1
dynein, cytoplasmic 1, light intermediate chain 1
chr21_-_3452683 0.06 ENSDART00000009740
smad7
SMAD family member 7
chr7_-_51953807 0.06 ENSDART00000174102
ENSDART00000145645
ENSDART00000052054
cyp2x10.2
cytochrome P450, family 2, subfamily X, polypeptide 10.2
chr17_-_19534474 0.06 ENSDART00000192469
cyp26c1
cytochrome P450, family 26, subfamily C, polypeptide 1
chr3_+_23248542 0.05 ENSDART00000185765
ENSDART00000192332
ppp1r9ba
protein phosphatase 1, regulatory subunit 9Ba
chr24_-_37640705 0.04 ENSDART00000066583
zgc:112496
zgc:112496
chr11_+_583725 0.03 ENSDART00000189415
mkrn2os.2
MKRN2 opposite strand, tandem duplicate 2
chr2_-_59231017 0.03 ENSDART00000143980
ENSDART00000184190
ftr29
finTRIM family, member 29
chr14_+_12316581 0.02 ENSDART00000170115
ENSDART00000149757
si:ch211-125c23.3
cx31.7
si:ch211-125c23.3
connexin 31.7
chr12_-_43437927 0.02 ENSDART00000169949
ptprea
protein tyrosine phosphatase, receptor type, E, a
chr25_-_26673570 0.02 ENSDART00000154917
ciartb
circadian associated repressor of transcription b
chr7_-_51953613 0.02 ENSDART00000142042
cyp2x10.2
cytochrome P450, family 2, subfamily X, polypeptide 10.2
chr12_-_17897134 0.01 ENSDART00000066407
nptx2b
neuronal pentraxin IIb
chr6_+_11829867 0.01 ENSDART00000151044
baz2ba
bromodomain adjacent to zinc finger domain, 2Ba
chr2_-_59345920 0.01 ENSDART00000134662
ftr37
finTRIM family, member 37
chr4_+_14343706 0.00 ENSDART00000142845
prl2
prolactin 2
chr9_+_38163876 0.00 ENSDART00000137955
clasp1a
cytoplasmic linker associated protein 1a

Network of associatons between targets according to the STRING database.

First level regulatory network of foxg1a+foxg1c+foxg1d

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0010633 negative regulation of epithelial cell migration(GO:0010633)
0.1 0.5 GO:0010718 positive regulation of epithelial to mesenchymal transition(GO:0010718)
0.1 0.9 GO:0040014 regulation of multicellular organism growth(GO:0040014)
0.1 0.3 GO:1901492 positive regulation of lymphangiogenesis(GO:1901492)
0.1 0.5 GO:0045329 carnitine biosynthetic process(GO:0045329)
0.1 0.7 GO:0060573 ventral spinal cord interneuron specification(GO:0021521) cell fate specification involved in pattern specification(GO:0060573)
0.1 0.2 GO:1902024 L-histidine transmembrane transport(GO:0089709) L-histidine transport(GO:1902024)
0.0 0.1 GO:0009229 thiamine diphosphate biosynthetic process(GO:0009229)
0.0 0.2 GO:0060159 regulation of dopamine receptor signaling pathway(GO:0060159)
0.0 0.2 GO:0018160 peptidyl-pyrromethane cofactor linkage(GO:0018160)
0.0 0.6 GO:0001867 complement activation, lectin pathway(GO:0001867)
0.0 0.4 GO:0016188 synaptic vesicle maturation(GO:0016188)
0.0 0.3 GO:0090110 cargo loading into COPII-coated vesicle(GO:0090110)
0.0 0.2 GO:0090259 regulation of retinal ganglion cell axon guidance(GO:0090259)
0.0 0.3 GO:0043252 sodium-independent organic anion transport(GO:0043252)
0.0 0.1 GO:0035279 mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing(GO:0098795)
0.0 0.2 GO:0036065 fucosylation(GO:0036065)
0.0 0.6 GO:0061512 protein localization to cilium(GO:0061512)
0.0 0.1 GO:0045448 regulation of mitotic cell cycle, embryonic(GO:0009794) mitotic cell cycle, embryonic(GO:0045448)
0.0 0.3 GO:0070831 basement membrane assembly(GO:0070831)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0098837 postsynaptic recycling endosome(GO:0098837)
0.1 0.4 GO:0033181 plasma membrane proton-transporting V-type ATPase complex(GO:0033181)
0.0 0.5 GO:0070971 endoplasmic reticulum exit site(GO:0070971)
0.0 0.3 GO:0031083 BLOC-1 complex(GO:0031083)
0.0 0.3 GO:0043256 basal lamina(GO:0005605) laminin complex(GO:0043256)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.9 GO:0031995 insulin-like growth factor I binding(GO:0031994) insulin-like growth factor II binding(GO:0031995)
0.0 0.1 GO:0030975 thiamine diphosphokinase activity(GO:0004788) thiamine binding(GO:0030975)
0.0 0.2 GO:0004418 hydroxymethylbilane synthase activity(GO:0004418)
0.0 0.2 GO:0070004 cysteine-type exopeptidase activity(GO:0070004)
0.0 0.2 GO:0051185 coenzyme transporter activity(GO:0051185)
0.0 0.4 GO:0030546 receptor activator activity(GO:0030546) receptor agonist activity(GO:0048018)
0.0 0.1 GO:0032574 5'-3' RNA helicase activity(GO:0032574)
0.0 0.6 GO:0005112 Notch binding(GO:0005112)
0.0 0.2 GO:0046920 alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.0 0.2 GO:0015186 L-glutamine transmembrane transporter activity(GO:0015186)
0.0 0.3 GO:0015347 sodium-independent organic anion transmembrane transporter activity(GO:0015347)
0.0 0.6 GO:0003823 antigen binding(GO:0003823)
0.0 0.1 GO:0070573 metallodipeptidase activity(GO:0070573)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 REACTOME RECEPTOR LIGAND BINDING INITIATES THE SECOND PROTEOLYTIC CLEAVAGE OF NOTCH RECEPTOR Genes involved in Receptor-ligand binding initiates the second proteolytic cleavage of Notch receptor
0.0 0.8 REACTOME O LINKED GLYCOSYLATION OF MUCINS Genes involved in O-linked glycosylation of mucins