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PRJNA195909:zebrafish embryo and larva development

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Results for hoxa11a

Z-value: 0.37

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Transcription factors associated with hoxa11a

Gene Symbol Gene ID Gene Info
hoxa11a
ENSDARG00000104162 homeobox A11a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxa11adr11_v1_chr19_+_19737214_197373000.304.3e-01Click!

Activity profile of hoxa11a motif

Sorted Z-values of hoxa11a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr9_-_39005317 0.46 ENSDART00000014207
myl1
myosin, light chain 1, alkali; skeletal, fast
chr7_+_20524064 0.46 ENSDART00000052917
slc3a2a
solute carrier family 3 (amino acid transporter heavy chain), member 2a
chr12_-_26851726 0.43 ENSDART00000047724
zeb1b
zinc finger E-box binding homeobox 1b
chr12_+_27117609 0.40 ENSDART00000076154
hoxb8b
homeobox B8b
chr11_+_2198831 0.31 ENSDART00000160515
hoxc6b
homeobox C6b
chr22_+_10646928 0.30 ENSDART00000038465
rassf1
Ras association (RalGDS/AF-6) domain family 1
chr2_-_10338759 0.29 ENSDART00000150166
ENSDART00000149584
gng12a
guanine nucleotide binding protein (G protein), gamma 12a
chr22_-_10502780 0.28 ENSDART00000136961
ecm2
extracellular matrix protein 2, female organ and adipocyte specific
chr9_-_3671911 0.25 ENSDART00000102900
sp5a
Sp5 transcription factor a
chr17_-_31695217 0.23 ENSDART00000104332
ENSDART00000143090
lin52
lin-52 DREAM MuvB core complex component
chr15_+_36115955 0.23 ENSDART00000032702
sst1.2
somatostatin 1, tandem duplicate 2
chr7_+_67467702 0.22 ENSDART00000168460
ENSDART00000170322
rpl13
ribosomal protein L13
chr1_+_31019165 0.22 ENSDART00000102210
itga6b
integrin, alpha 6b
chr23_+_36087219 0.22 ENSDART00000154825
hoxc3a
homeobox C3a
chr3_+_36284986 0.21 ENSDART00000059533
wipi1
WD repeat domain, phosphoinositide interacting 1
chr16_+_20910186 0.20 ENSDART00000046766
hoxa10b
homeobox A10b
chr7_-_43840418 0.19 ENSDART00000174592
cdh11
cadherin 11, type 2, OB-cadherin (osteoblast)
chr17_+_42274825 0.19 ENSDART00000020156
pax1a
paired box 1a
chr23_+_27068225 0.19 ENSDART00000054238
mipa
major intrinsic protein of lens fiber a
chr1_-_462165 0.19 ENSDART00000152799
si:ch73-244f7.3
si:ch73-244f7.3
chr2_-_3158919 0.19 ENSDART00000098394
wnt3a
wingless-type MMTV integration site family, member 3A
chr24_+_21540842 0.16 ENSDART00000091529
wasf3b
WAS protein family, member 3b
chr15_+_8767650 0.14 ENSDART00000033871
ap2s1
adaptor-related protein complex 2, sigma 1 subunit
chr10_+_33990572 0.13 ENSDART00000138547
fryb
furry homolog b (Drosophila)
chr20_-_46541834 0.12 ENSDART00000060685
ENSDART00000181720
tmed10
transmembrane p24 trafficking protein 10
chr7_+_31879649 0.12 ENSDART00000099789
mybpc3
myosin binding protein C, cardiac
chr3_+_24190207 0.12 ENSDART00000034762
prr15la
proline rich 15-like a
chr7_+_31879986 0.11 ENSDART00000138491
mybpc3
myosin binding protein C, cardiac
chr5_-_35301800 0.11 ENSDART00000085142
map1b
microtubule-associated protein 1B
chr20_+_43379029 0.11 ENSDART00000142486
ENSDART00000186486
unc93a
unc-93 homolog A
chr16_-_10316359 0.11 ENSDART00000104025
flot1b
flotillin 1b
chr1_+_45056371 0.10 ENSDART00000073689
ENSDART00000167309
btr01
bloodthirsty-related gene family, member 1
chr3_+_59851537 0.10 ENSDART00000180997
CU693479.1

chr15_-_14552101 0.10 ENSDART00000171169
numbl
numb homolog (Drosophila)-like
chr21_-_25618175 0.09 ENSDART00000133512
fosl1b
FOS-like antigen 1b
chr10_+_2587234 0.09 ENSDART00000126937
wu:fb59d01
wu:fb59d01
chr11_-_36051004 0.09 ENSDART00000025033
gpx1a
glutathione peroxidase 1a
chr19_-_22507715 0.09 ENSDART00000160153
pleca
plectin a
chr4_-_9586713 0.08 ENSDART00000145613
shank3b
SH3 and multiple ankyrin repeat domains 3b
chr11_+_24716837 0.08 ENSDART00000145217
zgc:153953
zgc:153953
chr18_-_2433011 0.08 ENSDART00000181922
ENSDART00000193276
CR769778.1

chr4_+_39368978 0.08 ENSDART00000160640
si:dkey-261o4.1
si:dkey-261o4.1
chr2_-_37874647 0.07 ENSDART00000039386
zgc:66427
zgc:66427
chr9_-_23922011 0.07 ENSDART00000145734
col6a3
collagen, type VI, alpha 3
chr6_-_40744720 0.07 ENSDART00000154916
ENSDART00000186922
p4htm
prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)
chr23_-_33750135 0.07 ENSDART00000187641
bin2a
bridging integrator 2a
chr1_-_56213723 0.07 ENSDART00000142505
ENSDART00000137237
si:dkey-76b14.2
si:dkey-76b14.2
chr11_+_41135055 0.06 ENSDART00000173252
camta1
calmodulin binding transcription activator 1
chr7_-_30280934 0.06 ENSDART00000126741
serf2
small EDRK-rich factor 2
chr16_-_6205790 0.06 ENSDART00000038495
ctnnb1
catenin (cadherin-associated protein), beta 1
chr20_+_33532296 0.06 ENSDART00000153153
kcnf1a
potassium voltage-gated channel, subfamily F, member 1a
chr20_-_37820939 0.06 ENSDART00000032978
nsl1
NSL1, MIS12 kinetochore complex component
chr14_-_48348973 0.06 ENSDART00000185822
CABZ01080056.1

chr23_-_1658980 0.06 ENSDART00000186227
CU693481.1

chr2_-_9259283 0.05 ENSDART00000133092
st6galnac5a
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5a
chr2_+_43851983 0.05 ENSDART00000126413
nlrb5
NOD-like receptor family B, member 5
chr21_+_13128180 0.05 ENSDART00000081426
odf2a
outer dense fiber of sperm tails 2a
chr7_+_20966434 0.05 ENSDART00000185570
efnb3b
ephrin-B3b
chr21_+_13127742 0.05 ENSDART00000179221
odf2a
outer dense fiber of sperm tails 2a
chr23_-_33750307 0.04 ENSDART00000162772
bin2a
bridging integrator 2a
chr12_-_34713690 0.04 ENSDART00000180807
bahcc1b
BAH domain and coiled-coil containing 1b
chr22_+_2239974 0.04 ENSDART00000141993
znf1144
zinc finger protein 1144
chr15_+_9297340 0.04 ENSDART00000055554
slc37a4a
solute carrier family 37 (glucose-6-phosphate transporter), member 4a
chr17_-_23727978 0.04 ENSDART00000079600
minpp1a
multiple inositol-polyphosphate phosphatase 1a
chr22_-_33916620 0.03 ENSDART00000191276
CR974456.1

chr4_-_20108833 0.03 ENSDART00000100867
fam3c
family with sequence similarity 3, member C
chr7_-_41014773 0.03 ENSDART00000013785
insig1
insulin induced gene 1
chr7_+_25036188 0.03 ENSDART00000163957
ENSDART00000169749
sb:cb1058
sb:cb1058
chr15_+_37950556 0.02 ENSDART00000153947
si:dkey-238d18.12
si:dkey-238d18.12
chr24_-_31223232 0.02 ENSDART00000164155
alg14
ALG14, UDP-N-acetylglucosaminyltransferase subunit
chr2_-_36914281 0.02 ENSDART00000008322
si:dkey-193b15.5
si:dkey-193b15.5
chr7_-_18508815 0.02 ENSDART00000173539
rgs12a
regulator of G protein signaling 12a
chr18_+_40993369 0.02 ENSDART00000141162
si:dkey-283j8.1
si:dkey-283j8.1
chr5_+_32932357 0.02 ENSDART00000192397
lmo4a
LIM domain only 4a
chr18_+_40993196 0.01 ENSDART00000115111
si:dkey-283j8.1
si:dkey-283j8.1
chr16_-_47426482 0.01 ENSDART00000148631
ENSDART00000149723
sept7b
septin 7b
chr12_-_34713888 0.01 ENSDART00000153272
bahcc1b
BAH domain and coiled-coil containing 1b
chr19_-_33370271 0.00 ENSDART00000132628
nkd3l
naked cuticle homolog 3, like
chr13_-_9875538 0.00 ENSDART00000041609
tm9sf3
transmembrane 9 superfamily member 3
chr16_-_24561354 0.00 ENSDART00000193278
ENSDART00000126274
si:ch211-79k12.2
si:ch211-79k12.2

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxa11a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0070587 regulation of cell-cell adhesion involved in gastrulation(GO:0070587)
0.0 0.2 GO:0003210 cardiac atrium formation(GO:0003210)
0.0 0.5 GO:0060142 regulation of syncytium formation by plasma membrane fusion(GO:0060142)
0.0 0.1 GO:1901890 positive regulation of cell junction assembly(GO:1901890)
0.0 0.2 GO:0006833 water transport(GO:0006833)
0.0 0.1 GO:2000055 positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000055)
0.0 0.2 GO:0021794 thalamus development(GO:0021794)
0.0 0.1 GO:0071800 podosome assembly(GO:0071800)
0.0 0.1 GO:0046958 nonassociative learning(GO:0046958) habituation(GO:0046959)
0.0 0.2 GO:0034497 protein localization to pre-autophagosomal structure(GO:0034497)
0.0 0.3 GO:0010811 positive regulation of cell-substrate adhesion(GO:0010811)
0.0 0.1 GO:0098815 postsynaptic density assembly(GO:0097107) modulation of excitatory postsynaptic potential(GO:0098815) positive regulation of excitatory postsynaptic potential(GO:2000463)
0.0 0.2 GO:2000601 positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0016600 flotillin complex(GO:0016600)
0.0 0.2 GO:0034045 pre-autophagosomal structure membrane(GO:0034045)
0.0 0.3 GO:0031680 G-protein beta/gamma-subunit complex(GO:0031680)
0.0 0.1 GO:0001891 phagocytic cup(GO:0001891)
0.0 0.1 GO:0030122 AP-2 adaptor complex(GO:0030122)
0.0 0.1 GO:0000444 MIS12/MIND type complex(GO:0000444)
0.0 0.2 GO:0090568 nuclear transcriptional repressor complex(GO:0090568)
0.0 0.1 GO:0005913 cell-cell adherens junction(GO:0005913) zonula adherens(GO:0005915)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0070052 collagen V binding(GO:0070052)
0.0 0.2 GO:0032036 myosin heavy chain binding(GO:0032036)
0.0 0.2 GO:0015250 water channel activity(GO:0015250)
0.0 0.2 GO:0071933 Arp2/3 complex binding(GO:0071933)
0.0 0.3 GO:0031681 G-protein beta-subunit binding(GO:0031681)
0.0 0.1 GO:0030160 GKAP/Homer scaffold activity(GO:0030160)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 PID WNT CANONICAL PATHWAY Canonical Wnt signaling pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS Genes involved in Apoptotic cleavage of cell adhesion proteins
0.0 0.5 REACTOME STRIATED MUSCLE CONTRACTION Genes involved in Striated Muscle Contraction
0.0 0.1 REACTOME RETROGRADE NEUROTROPHIN SIGNALLING Genes involved in Retrograde neurotrophin signalling