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PRJNA195909:zebrafish embryo and larva development

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Results for hoxc9a

Z-value: 1.88

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Transcription factors associated with hoxc9a

Gene Symbol Gene ID Gene Info
hoxc9a
ENSDARG00000092809 homeobox C9a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxc9adr11_v1_chr23_+_36095260_360952600.845.1e-03Click!

Activity profile of hoxc9a motif

Sorted Z-values of hoxc9a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr8_+_47633438 6.83 ENSDART00000139096
si:ch211-251b21.1
si:ch211-251b21.1
chr3_-_61205711 5.80 ENSDART00000055062
pvalb1
parvalbumin 1
chr6_+_55032439 4.30 ENSDART00000164232
ENSDART00000158845
ENSDART00000157584
ENSDART00000026359
ENSDART00000122794
ENSDART00000183742
mybphb
myosin binding protein Hb
chr3_+_33300522 3.59 ENSDART00000114023
hspb9
heat shock protein, alpha-crystallin-related, 9
chr17_+_23300827 3.51 ENSDART00000058745
zgc:165461
zgc:165461
chr5_-_51619262 3.21 ENSDART00000134606
ENSDART00000081249
otpb
orthopedia homeobox b
chr8_+_16004154 2.94 ENSDART00000134787
ENSDART00000172510
ENSDART00000141173
elavl4
ELAV like neuron-specific RNA binding protein 4
chr13_+_4671698 2.83 ENSDART00000164617
ENSDART00000128494
ENSDART00000165776
pla2g12b
phospholipase A2, group XIIB
chr5_-_51619742 2.80 ENSDART00000188537
otpb
orthopedia homeobox b
chr3_+_40809011 2.58 ENSDART00000033713
arpc1b
actin related protein 2/3 complex, subunit 1B
chr19_+_42983613 2.46 ENSDART00000033724
fabp3
fatty acid binding protein 3, muscle and heart
chr6_+_52804267 2.37 ENSDART00000065681
matn4
matrilin 4
chr19_+_19775757 2.37 ENSDART00000164677
hoxa3a
homeobox A3a
chr5_+_36932718 2.29 ENSDART00000037879
crx
cone-rod homeobox
chr8_+_6954984 2.27 ENSDART00000145610
si:ch211-255g12.6
si:ch211-255g12.6
chr17_+_32343121 2.22 ENSDART00000156051
dhx32b
DEAH (Asp-Glu-Ala-His) box polypeptide 32b
chr13_-_43599898 2.18 ENSDART00000084416
ENSDART00000145705
ablim1a
actin binding LIM protein 1a
chr3_+_23742868 2.18 ENSDART00000153512
hoxb3a
homeobox B3a
chr13_+_15004398 2.15 ENSDART00000057810
emx1
empty spiracles homeobox 1
chr7_+_31879649 2.12 ENSDART00000099789
mybpc3
myosin binding protein C, cardiac
chr21_-_27338639 2.08 ENSDART00000130632
hif1al2
hypoxia-inducible factor 1, alpha subunit, like 2
chr3_+_23743139 2.02 ENSDART00000187409
hoxb3a
homeobox B3a
chr2_+_2223837 2.00 ENSDART00000101038
ENSDART00000129354
tmie
transmembrane inner ear
chr11_-_6188413 1.87 ENSDART00000109972
ccl44
chemokine (C-C motif) ligand 44
chr7_+_31879986 1.86 ENSDART00000138491
mybpc3
myosin binding protein C, cardiac
chr8_+_22931427 1.86 ENSDART00000063096
sypa
synaptophysin a
chr16_-_35952789 1.77 ENSDART00000180118
eva1ba
eva-1 homolog Ba (C. elegans)
chr6_-_46875310 1.70 ENSDART00000154442
igfn1.3
immunoglobulin-like and fibronectin type III domain containing 1, tandem duplicate 3
chr19_+_19756425 1.68 ENSDART00000167606
hoxa3a
homeobox A3a
chr1_+_16144615 1.64 ENSDART00000054707
tusc3
tumor suppressor candidate 3
chr12_+_16440708 1.59 ENSDART00000113810
ankrd1b
ankyrin repeat domain 1b (cardiac muscle)
chr19_+_4916233 1.59 ENSDART00000159512
ppp1r1b
protein phosphatase 1, regulatory (inhibitor) subunit 1B
chr25_+_3058924 1.57 ENSDART00000029580
fth1b
ferritin, heavy polypeptide 1b
chr25_+_14109626 1.56 ENSDART00000109883
actc1c
actin, alpha, cardiac muscle 1c
chr17_+_51262556 1.54 ENSDART00000186748
ENSDART00000181606
ENSDART00000063738
ENSDART00000189066
eipr1
EARP complex and GARP complex interacting protein 1
chr4_+_10017049 1.53 ENSDART00000144175
ccdc136b
coiled-coil domain containing 136b
chr11_+_16040680 1.47 ENSDART00000157703
agtrap
angiotensin II receptor-associated protein
chr23_+_43255328 1.41 ENSDART00000102712
tgm2a
transglutaminase 2, C polypeptide A
chr1_-_39943596 1.40 ENSDART00000149730
stox2a
storkhead box 2a
chr10_+_20128267 1.36 ENSDART00000064615
dmtn
dematin actin binding protein
chr10_+_10788811 1.30 ENSDART00000101077
ENSDART00000139143
ptgdsa
prostaglandin D2 synthase a
chr15_-_14375452 1.30 ENSDART00000160675
ENSDART00000164028
ENSDART00000171642
dpf1
D4, zinc and double PHD fingers family 1
chr3_-_12930217 1.30 ENSDART00000166322
pdgfab
platelet-derived growth factor alpha polypeptide b
chr7_-_26408472 1.29 ENSDART00000111494
gal3st4
galactose-3-O-sulfotransferase 4
chr11_+_16040517 1.28 ENSDART00000111284
agtrap
angiotensin II receptor-associated protein
chr14_-_17072736 1.28 ENSDART00000106333
phox2bb
paired-like homeobox 2bb
chr17_+_18117029 1.27 ENSDART00000154646
ENSDART00000179739
bcl11ba
B cell CLL/lymphoma 11Ba
chr1_-_681116 1.25 ENSDART00000165894
adamts1
ADAM metallopeptidase with thrombospondin type 1 motif, 1
chr23_+_20669149 1.24 ENSDART00000138936
arhgef3l
Rho guanine nucleotide exchange factor (GEF) 3, like
chr25_-_13842618 1.20 ENSDART00000160258
mapk8ip1a
mitogen-activated protein kinase 8 interacting protein 1a
chr4_+_16715267 1.18 ENSDART00000143849
pkp2
plakophilin 2
chr14_-_36799280 1.17 ENSDART00000168615
rnf130
ring finger protein 130
chr11_-_3334248 1.17 ENSDART00000154314
ENSDART00000121861
prph
peripherin
chr14_+_36231126 1.13 ENSDART00000141766
elovl6
ELOVL fatty acid elongase 6
chr4_+_10754802 1.05 ENSDART00000181470
stab2
stabilin 2
chr15_-_5467477 0.96 ENSDART00000123839
arrb1
arrestin, beta 1
chr25_-_5963535 0.95 ENSDART00000155751
nuak1b
NUAK family, SNF1-like kinase, 1b
chr21_-_131236 0.94 ENSDART00000160005
si:ch1073-398f15.1
si:ch1073-398f15.1
chr5_-_71838520 0.91 ENSDART00000174396
CU927890.1

chr8_-_23701880 0.89 ENSDART00000139897
si:ch73-237c6.1
si:ch73-237c6.1
chr10_-_19801821 0.84 ENSDART00000148013
gfra2b
GDNF family receptor alpha 2b
chr21_+_11969603 0.82 ENSDART00000142247
ENSDART00000140652
mlnl
motilin-like
chr25_-_1720736 0.81 ENSDART00000097256
SLC6A13
solute carrier family 6 member 13
chr10_-_11385155 0.79 ENSDART00000064214
plac8.1
placenta-specific 8, tandem duplicate 1
chr3_+_34821327 0.78 ENSDART00000055262
cdk5r1a
cyclin-dependent kinase 5, regulatory subunit 1a (p35)
chr10_+_26571174 0.78 ENSDART00000148617
ENSDART00000112956
slc9a6b
solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6b
chr10_+_439692 0.78 ENSDART00000147740
zdhhc8a
zinc finger, DHHC-type containing 8a
chr2_-_18830722 0.77 ENSDART00000165330
ENSDART00000165698
pbx1a
pre-B-cell leukemia homeobox 1a
chr22_-_21046654 0.75 ENSDART00000064902
ssbp4
single stranded DNA binding protein 4
chr1_-_39909985 0.71 ENSDART00000181673
stox2a
storkhead box 2a
chr7_-_41964877 0.66 ENSDART00000092351
ENSDART00000193395
ENSDART00000187947
neto2b
neuropilin (NRP) and tolloid (TLL)-like 2b
chr17_-_20849879 0.66 ENSDART00000088100
ENSDART00000149630
ank3b
ankyrin 3b
chr17_-_19626357 0.64 ENSDART00000011432
reep3a
receptor accessory protein 3a
chr10_+_31953502 0.64 ENSDART00000185634
lhfpl6
LHFPL tetraspan subfamily member 6
chr5_-_16351306 0.62 ENSDART00000168643
CABZ01088700.1

chr22_-_21046843 0.61 ENSDART00000133982
ssbp4
single stranded DNA binding protein 4
chr5_+_9408901 0.50 ENSDART00000193364
FP236810.1

chr21_+_42930558 0.47 ENSDART00000135234
stk32a
serine/threonine kinase 32A
chr12_+_27213733 0.42 ENSDART00000133048
nbr1a
neighbor of brca1 gene 1a
chr15_+_8043751 0.39 ENSDART00000193701
cadm2b
cell adhesion molecule 2b
chr12_-_6172154 0.39 ENSDART00000185434
a1cf
apobec1 complementation factor
chr14_+_35024521 0.38 ENSDART00000158634
ENSDART00000170631
ebf3a
early B cell factor 3a
chr14_+_11762991 0.36 ENSDART00000110004
frmpd3
FERM and PDZ domain containing 3
chr13_+_31583034 0.35 ENSDART00000111763
six6a
SIX homeobox 6a
chr14_+_21783400 0.35 ENSDART00000164023
ankrd13d
ankyrin repeat domain 13 family, member D
chr12_-_20362041 0.35 ENSDART00000184145
ENSDART00000105952
aqp8a.2
aquaporin 8a, tandem duplicate 2
chr18_-_2433011 0.35 ENSDART00000181922
ENSDART00000193276
CR769778.1

chr21_-_1742159 0.32 ENSDART00000151049
onecut2
one cut homeobox 2
chr9_+_16449398 0.32 ENSDART00000006787
epha3
eph receptor A3
chr20_+_27464721 0.32 ENSDART00000189552
kif26aa
kinesin family member 26Aa
chr25_+_19008497 0.31 ENSDART00000104420
samm50
SAMM50 sorting and assembly machinery component
chr11_+_19159083 0.30 ENSDART00000138964
adamts9
ADAM metallopeptidase with thrombospondin type 1 motif, 9
chr17_+_36627099 0.29 ENSDART00000154104
impg1b
interphotoreceptor matrix proteoglycan 1b
chr1_-_23157583 0.28 ENSDART00000144208
adgrl3.1
adhesion G protein-coupled receptor L3.1
chr4_+_11439511 0.26 ENSDART00000150485
pcloa
piccolo presynaptic cytomatrix protein a
chr15_+_8767650 0.25 ENSDART00000033871
ap2s1
adaptor-related protein complex 2, sigma 1 subunit
chr14_-_30141162 0.24 ENSDART00000053916
mtnr1ab
melatonin receptor 1A b
chr11_+_25044082 0.24 ENSDART00000123263
phf20a
PHD finger protein 20, a
chr2_+_42715995 0.23 ENSDART00000143419
ENSDART00000183914
ENSDART00000184371
ENSDART00000185485
ENSDART00000037332
ftr12
finTRIM family, member 12
chr3_-_37699992 0.23 ENSDART00000151193
gpatch8
G patch domain containing 8
chr17_-_30839338 0.22 ENSDART00000139707
gdf7
growth differentiation factor 7
chr12_-_16380961 0.21 ENSDART00000086984
hectd2
HECT domain containing 2
chr19_+_28256076 0.20 ENSDART00000133354
irx4b
iroquois homeobox 4b
chr25_-_7999756 0.19 ENSDART00000159908
camk1db
calcium/calmodulin-dependent protein kinase 1Db
chr11_-_34124319 0.16 ENSDART00000173275
atp13a3
ATPase 13A3
chr21_-_38853737 0.15 ENSDART00000184100
tlr22
toll-like receptor 22
chr2_-_9259283 0.13 ENSDART00000133092
st6galnac5a
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5a
chr3_+_25825043 0.11 ENSDART00000153749
pik3r6b
phosphoinositide-3-kinase, regulatory subunit 6b
chr19_-_10425140 0.10 ENSDART00000145319
si:ch211-171h4.3
si:ch211-171h4.3
chr23_+_11374168 0.08 ENSDART00000163083
chl1a
cell adhesion molecule L1-like a
chr23_+_3721042 0.07 ENSDART00000143323
smim29
small integral membrane protein 29
chr1_-_59422880 0.06 ENSDART00000167244
si:ch211-188p14.2
si:ch211-188p14.2
chr7_-_41693004 0.01 ENSDART00000121509
malrd1
MAM and LDL receptor class A domain containing 1
chr18_-_25855263 0.00 ENSDART00000042074
sema4ba
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ba

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxc9a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 6.0 GO:0021767 mammillary body development(GO:0021767)
0.8 4.0 GO:0003210 cardiac atrium formation(GO:0003210)
0.6 4.0 GO:0060017 parathyroid gland development(GO:0060017)
0.3 1.3 GO:0061549 sympathetic ganglion development(GO:0061549)
0.3 2.2 GO:0035777 pronephric distal tubule development(GO:0035777)
0.3 1.1 GO:1901492 positive regulation of lymphangiogenesis(GO:1901492)
0.2 1.0 GO:0001774 microglial cell activation(GO:0001774) regulation of cytokine activity(GO:0060300) regulation of receptor binding(GO:1900120) regulation of chemokine activity(GO:1900136)
0.2 1.6 GO:0097577 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.2 2.8 GO:1903963 icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) acylglycerol homeostasis(GO:0055090) triglyceride homeostasis(GO:0070328) arachidonate transport(GO:1903963)
0.2 1.2 GO:0045110 intermediate filament bundle assembly(GO:0045110)
0.1 3.5 GO:0030032 lamellipodium assembly(GO:0030032)
0.1 1.3 GO:0031954 positive regulation of protein autophosphorylation(GO:0031954)
0.1 0.8 GO:0048795 swim bladder morphogenesis(GO:0048795)
0.1 2.6 GO:0002574 thrombocyte differentiation(GO:0002574)
0.1 1.5 GO:2000054 negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000054)
0.1 0.3 GO:0007509 mesoderm migration involved in gastrulation(GO:0007509)
0.1 2.0 GO:0060088 auditory receptor cell stereocilium organization(GO:0060088)
0.1 0.3 GO:0045040 outer mitochondrial membrane organization(GO:0007008) protein import into mitochondrial outer membrane(GO:0045040)
0.1 1.6 GO:0015693 magnesium ion transport(GO:0015693)
0.1 0.7 GO:2000312 regulation of kainate selective glutamate receptor activity(GO:2000312)
0.1 0.8 GO:0007084 mitotic nuclear envelope reassembly(GO:0007084)
0.1 2.1 GO:0071456 cellular response to hypoxia(GO:0071456)
0.1 0.8 GO:1990118 sodium ion import(GO:0097369) sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118)
0.1 1.4 GO:0018149 peptide cross-linking(GO:0018149)
0.1 0.6 GO:0071786 endoplasmic reticulum tubular network organization(GO:0071786)
0.1 1.1 GO:0034625 fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626)
0.1 5.4 GO:0035249 synaptic transmission, glutamatergic(GO:0035249)
0.0 1.9 GO:0048247 lymphocyte chemotaxis(GO:0048247)
0.0 2.3 GO:0042462 eye photoreceptor cell development(GO:0042462)
0.0 1.5 GO:0032456 endocytic recycling(GO:0032456)
0.0 2.8 GO:0008217 regulation of blood pressure(GO:0008217)
0.0 1.2 GO:0035025 positive regulation of Rho protein signal transduction(GO:0035025)
0.0 0.3 GO:0046958 nonassociative learning(GO:0046958) habituation(GO:0046959)
0.0 1.2 GO:0045103 intermediate filament-based process(GO:0045103) intermediate filament cytoskeleton organization(GO:0045104)
0.0 0.8 GO:0035622 intrahepatic bile duct development(GO:0035622)
0.0 0.4 GO:0016556 mRNA modification(GO:0016556)
0.0 0.3 GO:1904071 presynaptic active zone assembly(GO:1904071)
0.0 0.9 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.0 1.4 GO:0009247 glycolipid biosynthetic process(GO:0009247)
0.0 1.2 GO:0046328 regulation of JNK cascade(GO:0046328)
0.0 2.3 GO:0001947 heart looping(GO:0001947)
0.0 3.5 GO:0048704 embryonic skeletal system morphogenesis(GO:0048704)
0.0 0.3 GO:1990798 pancreas regeneration(GO:1990798)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.4 5.5 GO:0032983 kainate selective glutamate receptor complex(GO:0032983)
0.2 0.8 GO:0016533 cyclin-dependent protein kinase 5 holoenzyme complex(GO:0016533)
0.1 2.6 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.1 1.6 GO:0008250 oligosaccharyltransferase complex(GO:0008250)
0.1 1.2 GO:0014704 intercalated disc(GO:0014704)
0.1 2.9 GO:0043204 perikaryon(GO:0043204)
0.1 1.3 GO:0071565 nBAF complex(GO:0071565)
0.0 0.6 GO:0098827 endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827)
0.0 2.2 GO:0097517 stress fiber(GO:0001725) contractile actin filament bundle(GO:0097517)
0.0 0.3 GO:0001401 mitochondrial sorting and assembly machinery complex(GO:0001401)
0.0 0.3 GO:0033165 interphotoreceptor matrix(GO:0033165)
0.0 0.3 GO:0098982 GABA-ergic synapse(GO:0098982)
0.0 0.3 GO:0030122 AP-2 adaptor complex(GO:0030122)
0.0 1.9 GO:0099501 synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501)
0.0 0.2 GO:0044545 NSL complex(GO:0044545)
0.0 0.4 GO:0000407 pre-autophagosomal structure(GO:0000407)
0.0 1.2 GO:0005882 intermediate filament(GO:0005882)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.4 5.5 GO:0015277 kainate selective glutamate receptor activity(GO:0015277)
0.4 1.6 GO:0061629 RNA polymerase II sequence-specific DNA binding transcription factor binding(GO:0061629)
0.4 4.0 GO:0032036 myosin heavy chain binding(GO:0032036)
0.2 1.2 GO:0019215 intermediate filament binding(GO:0019215)
0.1 1.3 GO:0005161 platelet-derived growth factor receptor binding(GO:0005161)
0.1 1.3 GO:0001733 galactosylceramide sulfotransferase activity(GO:0001733) galactose 3-O-sulfotransferase activity(GO:0050694)
0.1 1.6 GO:0008199 ferric iron binding(GO:0008199)
0.1 2.8 GO:0004623 phospholipase A2 activity(GO:0004623)
0.1 0.8 GO:0015386 monovalent cation:proton antiporter activity(GO:0005451) sodium:proton antiporter activity(GO:0015385) potassium:proton antiporter activity(GO:0015386)
0.1 1.4 GO:0003810 protein-glutamine gamma-glutamyltransferase activity(GO:0003810)
0.1 0.8 GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity(GO:0061575)
0.1 1.1 GO:0102337 fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.1 0.8 GO:0051721 protein phosphatase 2A binding(GO:0051721)
0.0 1.9 GO:0048020 CCR chemokine receptor binding(GO:0048020)
0.0 1.9 GO:0017075 syntaxin-1 binding(GO:0017075)
0.0 1.6 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 0.2 GO:0008502 melatonin receptor activity(GO:0008502)
0.0 0.3 GO:0015250 water channel activity(GO:0015250)
0.0 3.5 GO:0019838 growth factor binding(GO:0019838)
0.0 1.1 GO:0005540 hyaluronic acid binding(GO:0005540)
0.0 0.3 GO:0005005 transmembrane-ephrin receptor activity(GO:0005005)
0.0 0.3 GO:0035615 clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748)
0.0 0.1 GO:0001665 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity(GO:0001665)
0.0 0.3 GO:0098882 structural constituent of presynaptic active zone(GO:0098882)
0.0 2.2 GO:0004386 helicase activity(GO:0004386)
0.0 4.3 GO:0051015 actin filament binding(GO:0051015)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.0 PID IL8 CXCR1 PATHWAY IL8- and CXCR1-mediated signaling events
0.0 2.4 PID RAC1 PATHWAY RAC1 signaling pathway
0.0 0.8 ST WNT CA2 CYCLIC GMP PATHWAY Wnt/Ca2+/cyclic GMP signaling.
0.0 2.4 NABA ECM GLYCOPROTEINS Genes encoding structural ECM glycoproteins
0.0 0.3 PID EPHA FWDPATHWAY EPHA forward signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.1 REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS Genes involved in Synthesis of very long-chain fatty acyl-CoAs
0.1 1.1 REACTOME HYALURONAN UPTAKE AND DEGRADATION Genes involved in Hyaluronan uptake and degradation
0.1 1.6 REACTOME DARPP 32 EVENTS Genes involved in DARPP-32 events
0.0 1.0 REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus
0.0 0.3 REACTOME RETROGRADE NEUROTROPHIN SIGNALLING Genes involved in Retrograde neurotrophin signalling
0.0 1.6 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation