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PRJNA195909:zebrafish embryo and larva development
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Results for prdm4
Z-value: 0.34
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Transcription factors associated with prdm4
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
prdm4
|
ENSDARG00000017366 | PR domain containing 4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| prdm4 | dr11_v1_chr4_-_14926637_14926637 | 0.77 | 1.6e-02 | Click! |
Activity profile of prdm4 motif
Sorted Z-values of prdm4 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr3_+_31621774 | 1.55 |
ENSDART00000076636
|
fzd2
|
frizzled class receptor 2 |
| chr9_-_13355071 | 0.90 |
ENSDART00000084055
|
fzd7a
|
frizzled class receptor 7a |
| chr23_-_24682244 | 0.82 |
ENSDART00000104035
|
ctdsp2
|
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 |
| chr10_-_3332362 | 0.57 |
ENSDART00000007577
ENSDART00000055140 |
tor4aa
|
torsin family 4, member Aa |
| chr20_-_26001288 | 0.19 |
ENSDART00000136518
ENSDART00000063177 |
capn3b
|
calpain 3b |
| chr3_+_32425202 | 0.17 |
ENSDART00000156464
|
prr12b
|
proline rich 12b |
| chr3_+_25999477 | 0.15 |
ENSDART00000024316
|
mcm5
|
minichromosome maintenance complex component 5 |
| chr19_+_2670130 | 0.14 |
ENSDART00000152152
|
si:ch73-24k9.2
|
si:ch73-24k9.2 |
| chr22_-_21046654 | 0.13 |
ENSDART00000064902
|
ssbp4
|
single stranded DNA binding protein 4 |
| chr22_-_21046843 | 0.12 |
ENSDART00000133982
|
ssbp4
|
single stranded DNA binding protein 4 |
| chr9_+_15893093 | 0.11 |
ENSDART00000099483
ENSDART00000134657 |
si:dkey-14o1.20
|
si:dkey-14o1.20 |
| chrM_+_9735 | 0.09 |
ENSDART00000093613
|
mt-co3
|
cytochrome c oxidase III, mitochondrial |
| chr20_-_45709990 | 0.09 |
ENSDART00000027482
|
gpcpd1
|
glycerophosphocholine phosphodiesterase 1 |
| chr17_+_31611854 | 0.07 |
ENSDART00000011706
|
adprhl2
|
ADP-ribosylhydrolase like 2 |
| chr20_-_42203629 | 0.05 |
ENSDART00000074959
|
slc35f1
|
solute carrier family 35, member F1 |
| chr5_+_27442247 | 0.05 |
ENSDART00000184129
|
loxl2b
|
lysyl oxidase-like 2b |
| chr8_+_20679759 | 0.02 |
ENSDART00000088668
|
nfic
|
nuclear factor I/C |
| chr9_+_22359919 | 0.01 |
ENSDART00000009591
|
crygs4
|
crystallin, gamma S4 |
Network of associatons between targets according to the STRING database.
First level regulatory network of prdm4
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.5 | GO:0061341 | non-canonical Wnt signaling pathway involved in heart development(GO:0061341) |
| 0.2 | 0.9 | GO:0035988 | chondrocyte proliferation(GO:0035988) |
| 0.1 | 0.2 | GO:0097264 | self proteolysis(GO:0097264) |
| 0.0 | 0.1 | GO:0036388 | pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299) |
| 0.0 | 0.0 | GO:1902455 | negative regulation of stem cell population maintenance(GO:1902455) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.3 | GO:0042813 | Wnt-activated receptor activity(GO:0042813) |
| 0.1 | 0.8 | GO:0008420 | CTD phosphatase activity(GO:0008420) |
| 0.0 | 0.1 | GO:0047389 | glycerophosphocholine phosphodiesterase activity(GO:0047389) |
| 0.0 | 0.1 | GO:0043142 | single-stranded DNA-dependent ATP-dependent DNA helicase activity(GO:0017116) single-stranded DNA-dependent ATPase activity(GO:0043142) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.5 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
| 0.1 | 0.8 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.5 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
| 0.0 | 0.8 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
| 0.0 | 0.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |