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PRJNA195909:zebrafish embryo and larva development

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Results for sox4a+sox4b

Z-value: 0.53

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Transcription factors associated with sox4a+sox4b

Gene Symbol Gene ID Gene Info
sox4a
ENSDARG00000004588 SRY-box transcription factor 4a
sox4b
ENSDARG00000098834 SRY-box transcription factor 4b

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
sox4adr11_v1_chr19_-_28789404_287894090.541.3e-01Click!
sox4bdr11_v1_chr16_+_68069_681240.176.6e-01Click!

Activity profile of sox4a+sox4b motif

Sorted Z-values of sox4a+sox4b motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr24_-_37568359 0.77 ENSDART00000056286
h1f0
H1 histone family, member 0
chr7_+_44713135 0.71 ENSDART00000170721
si:dkey-56m19.5
si:dkey-56m19.5
chr13_+_22675802 0.67 ENSDART00000145538
ENSDART00000143312
zgc:193505
zgc:193505
chr8_-_16697912 0.61 ENSDART00000076542
rpe65b
retinal pigment epithelium-specific protein 65b
chr23_+_35714574 0.61 ENSDART00000164616
tuba1c
tubulin, alpha 1c
chr24_-_33756003 0.54 ENSDART00000079283
tmeff1b
transmembrane protein with EGF-like and two follistatin-like domains 1b
chr21_+_26389391 0.53 ENSDART00000077197
tmsb
thymosin, beta
chr20_+_34770197 0.49 ENSDART00000018304
mcm3
minichromosome maintenance complex component 3
chr1_+_17376922 0.48 ENSDART00000145068
fat1a
FAT atypical cadherin 1a
chr23_+_17865554 0.45 ENSDART00000181009
ENSDART00000162822
naca
nascent polypeptide-associated complex alpha subunit
chr6_+_12968101 0.44 ENSDART00000013781
mcm6
minichromosome maintenance complex component 6
chr9_+_25330905 0.44 ENSDART00000101470
itm2bb
integral membrane protein 2Bb
chr23_-_3758637 0.42 ENSDART00000131536
ENSDART00000139408
ENSDART00000137826
hmga1a
high mobility group AT-hook 1a
chr20_+_31269778 0.42 ENSDART00000133353
apobb.1
apolipoprotein Bb, tandem duplicate 1
chr14_-_8080416 0.42 ENSDART00000045109
zgc:92242
zgc:92242
chr23_+_17865953 0.42 ENSDART00000014723
ENSDART00000140302
ENSDART00000144800
naca
nascent polypeptide-associated complex alpha subunit
chr15_+_35691783 0.41 ENSDART00000183994
CT573366.1

chr8_-_16712111 0.40 ENSDART00000184147
ENSDART00000180419
ENSDART00000076600
rpe65c
retinal pigment epithelium-specific protein 65c
chr7_-_69636502 0.39 ENSDART00000126739
tspan5a
tetraspanin 5a
chr8_+_46217861 0.39 ENSDART00000038790
angptl7
angiopoietin-like 7
chr5_-_46505691 0.39 ENSDART00000111589
ENSDART00000122966
ENSDART00000166907
hapln1a
hyaluronan and proteoglycan link protein 1a
chr9_+_54179306 0.39 ENSDART00000189829
tmsb4x
thymosin, beta 4 x
chr9_+_48007081 0.38 ENSDART00000060593
ENSDART00000099835
zgc:92380
zgc:92380
chr5_-_30615901 0.37 ENSDART00000147769
si:ch211-117m20.5
si:ch211-117m20.5
chr23_+_25428513 0.37 ENSDART00000144554
fmnl3
formin-like 3
chr15_+_28368644 0.36 ENSDART00000168453
slc43a2a
solute carrier family 43 (amino acid system L transporter), member 2a
chr19_-_17774875 0.36 ENSDART00000151133
ENSDART00000130695
top2b
DNA topoisomerase II beta
chr25_+_31323978 0.36 ENSDART00000067030
lsp1
lymphocyte-specific protein 1
chr7_-_26408472 0.36 ENSDART00000111494
gal3st4
galactose-3-O-sulfotransferase 4
chr1_+_24076243 0.35 ENSDART00000014608
mab21l2
mab-21-like 2
chr5_+_15203421 0.34 ENSDART00000040826
tbx1
T-box 1
chr4_-_16354292 0.33 ENSDART00000139919
lum
lumican
chr19_-_15855427 0.33 ENSDART00000133059
cited4a
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a
chr23_+_36144487 0.32 ENSDART00000082473
hoxc3a
homeobox C3a
chr8_+_23093155 0.32 ENSDART00000063075
zgc:100920
zgc:100920
chr15_-_26549693 0.32 ENSDART00000186432
serpinf2b
serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2b
chr6_-_6976096 0.31 ENSDART00000151822
ENSDART00000039443
ENSDART00000177960
tuba8l4
tubulin, alpha 8 like 4
chr25_+_34576067 0.30 ENSDART00000157519
trpm1b
transient receptor potential cation channel, subfamily M, member 1b
chr25_+_35502552 0.29 ENSDART00000189612
ENSDART00000058443
fibina
fin bud initiation factor a
chr15_-_15469079 0.29 ENSDART00000132637
ENSDART00000004220
rab34a
RAB34, member RAS oncogene family a
chr7_-_24149670 0.29 ENSDART00000005884
mmp14a
matrix metallopeptidase 14a (membrane-inserted)
chr23_+_36083529 0.29 ENSDART00000053295
ENSDART00000130260
hoxc10a
homeobox C10a
chr1_+_46194333 0.28 ENSDART00000010894
sox1b
SRY (sex determining region Y)-box 1b
chr10_+_18952271 0.28 ENSDART00000146517
dpysl2b
dihydropyrimidinase-like 2b
chr9_+_32978302 0.27 ENSDART00000007630
nhlh2
nescient helix loop helix 2
chr14_-_1955257 0.26 ENSDART00000193254
pcdh2g5
protocadherin 2 gamma 5
chr10_-_27196093 0.26 ENSDART00000185282
auts2a
autism susceptibility candidate 2a
chr2_-_20574193 0.26 ENSDART00000190448
si:ch211-267e7.3
si:ch211-267e7.3
chr19_+_43969363 0.24 ENSDART00000051712
gatad1
GATA zinc finger domain containing 1
chr16_-_26731928 0.24 ENSDART00000135860
rnf41l
ring finger protein 41, like
chr13_+_44857087 0.24 ENSDART00000017770
zbtb8os
zinc finger and BTB domain containing 8 opposite strand
chr16_-_9675982 0.24 ENSDART00000113724
mal2
mal, T cell differentiation protein 2 (gene/pseudogene)
chr7_+_65876335 0.24 ENSDART00000150143
tead1b
TEA domain family member 1b
chr15_-_15468326 0.24 ENSDART00000161192
rab34a
RAB34, member RAS oncogene family a
chr12_+_5081759 0.23 ENSDART00000164178
prrt2
proline-rich transmembrane protein 2
chr20_-_49681850 0.23 ENSDART00000025926
col12a1b
collagen, type XII, alpha 1b
chr15_+_28368823 0.23 ENSDART00000142298
slc43a2a
solute carrier family 43 (amino acid system L transporter), member 2a
chr22_+_28446365 0.23 ENSDART00000189359
abi3bpb
ABI family, member 3 (NESH) binding protein b
chr21_-_35853245 0.23 ENSDART00000172245
sgcd
sarcoglycan, delta (dystrophin-associated glycoprotein)
chr21_-_2310064 0.22 ENSDART00000169520
si:ch211-241b2.1
si:ch211-241b2.1
chr23_+_42819221 0.22 ENSDART00000180495
myl9a
myosin, light chain 9a, regulatory
chr2_+_26179096 0.22 ENSDART00000024662
plppr3a
phospholipid phosphatase related 3a
chr8_+_14158021 0.22 ENSDART00000080832
si:dkey-6n6.2
si:dkey-6n6.2
chr14_-_1958994 0.21 ENSDART00000161783
pcdh2g5
protocadherin 2 gamma 5
chr7_-_26308098 0.21 ENSDART00000146440
ENSDART00000146935
ENSDART00000164627
zgc:77439
zgc:77439
chr17_-_5860222 0.21 ENSDART00000058894
si:ch73-340m8.2
si:ch73-340m8.2
chr13_-_1151410 0.21 ENSDART00000007231
psmb1
proteasome subunit beta 1
chr24_-_6345647 0.21 ENSDART00000108994
zgc:174877
zgc:174877
chr25_+_28776562 0.21 ENSDART00000109702
slc41a2a
solute carrier family 41 (magnesium transporter), member 2a
chr4_+_15954293 0.20 ENSDART00000132695
si:dkey-117n7.4
si:dkey-117n7.4
chr6_+_7249531 0.20 ENSDART00000125912
ENSDART00000083424
ENSDART00000049695
ENSDART00000136088
dzip1
DAZ interacting zinc finger protein 1
chr23_-_3759345 0.20 ENSDART00000132205
ENSDART00000137707
ENSDART00000189382
hmga1a
high mobility group AT-hook 1a
chr5_+_64739762 0.20 ENSDART00000161112
ENSDART00000135610
ENSDART00000002908
olfm1a
olfactomedin 1a
chr10_+_31938796 0.20 ENSDART00000182579
lhfpl6
LHFPL tetraspan subfamily member 6
chr11_+_30296332 0.19 ENSDART00000192843
ugt1b7
UDP glucuronosyltransferase 1 family, polypeptide B7
chr6_-_54180699 0.19 ENSDART00000045901
rps10
ribosomal protein S10
chr23_+_36122058 0.19 ENSDART00000184448
hoxc3a
homeobox C3a
chr21_-_15674802 0.19 ENSDART00000136666
mmp11b
matrix metallopeptidase 11b
chr16_-_24612871 0.19 ENSDART00000155614
ENSDART00000154787
ENSDART00000155983
ENSDART00000156519
fxyd6l
FXYD domain containing ion transport regulator 6 like
chr25_+_19149241 0.19 ENSDART00000184982
ENSDART00000067324
mfge8b
milk fat globule-EGF factor 8 protein b
chr19_+_43119014 0.19 ENSDART00000023156
eef1a1l1
eukaryotic translation elongation factor 1 alpha 1, like 1
chr14_-_44773864 0.18 ENSDART00000158386
si:dkey-109l4.3
si:dkey-109l4.3
chr1_+_54773877 0.18 ENSDART00000129831
nlrc6
NLR family CARD domain containing 6
chr23_-_29824146 0.18 ENSDART00000020616
zgc:194189
zgc:194189
chr8_-_28349859 0.18 ENSDART00000062671
tuba8l
tubulin, alpha 8 like
chr9_-_1939232 0.18 ENSDART00000146131
hoxd3a
homeobox D3a
chr8_+_48480529 0.18 ENSDART00000186631
PRDM16
si:ch211-263k4.2
chr11_-_45185792 0.18 ENSDART00000171328
si:dkey-93h22.7
si:dkey-93h22.7
chr3_+_56645710 0.18 ENSDART00000193978
CR759836.1

chr25_-_3503164 0.17 ENSDART00000191477
ENSDART00000186345
ENSDART00000180199
PRKAR2B
si:ch211-272n13.7
chr24_-_6345965 0.17 ENSDART00000178287
zgc:174877
zgc:174877
chr20_+_26881600 0.16 ENSDART00000174799
serpinb1
serpin peptidase inhibitor, clade B (ovalbumin), member 1
chr6_-_40098641 0.16 ENSDART00000017402
ip6k2b
inositol hexakisphosphate kinase 2b
chr12_-_30777540 0.16 ENSDART00000126466
entpd1
ectonucleoside triphosphate diphosphohydrolase 1
chr11_+_3959495 0.16 ENSDART00000122953
gnl3
guanine nucleotide binding protein-like 3 (nucleolar)
chr7_+_20019125 0.16 ENSDART00000186391
bcl6b
B-cell CLL/lymphoma 6, member B
chr1_-_9652547 0.16 ENSDART00000016750
ENSDART00000127735
ENSDART00000160474
ENSDART00000080323
ENSDART00000126996
ENSDART00000126877
ENSDART00000123773
ugt5b3
ugt5b2
ugt5b3
ugt5b1
UDP glucuronosyltransferase 5 family, polypeptide B3
UDP glucuronosyltransferase 5 family, polypeptide B2
UDP glucuronosyltransferase 5 family, polypeptide B3
UDP glucuronosyltransferase 5 family, polypeptide B1
chr12_-_30777743 0.15 ENSDART00000148888
entpd1
ectonucleoside triphosphate diphosphohydrolase 1
chr5_+_43870389 0.15 ENSDART00000141002
zgc:112966
zgc:112966
chr4_+_18843015 0.15 ENSDART00000152086
ENSDART00000066977
ENSDART00000132567
bik
BCL2 interacting killer
chr6_-_31224563 0.15 ENSDART00000104616
lepr
leptin receptor
chr5_+_22970617 0.15 ENSDART00000192859
hmgn7
high mobility group nucleosomal binding domain 7
chr19_-_19339285 0.15 ENSDART00000158413
ENSDART00000170479
cspg5b
chondroitin sulfate proteoglycan 5b
chr6_-_19023468 0.15 ENSDART00000184729
sept9b
septin 9b
chr13_-_27916439 0.15 ENSDART00000139081
ENSDART00000087097
ogfrl1
opioid growth factor receptor-like 1
chr13_-_43599898 0.14 ENSDART00000084416
ENSDART00000145705
ablim1a
actin binding LIM protein 1a
chr10_+_36650222 0.14 ENSDART00000126963
ucp3
uncoupling protein 3
chr15_-_4094888 0.14 ENSDART00000166307
TM4SF19
si:dkey-83h2.3
chr20_+_7584211 0.14 ENSDART00000132481
ENSDART00000127975
ENSDART00000144551
bloc1s2
biogenesis of lysosomal organelles complex-1, subunit 2
chr21_-_4539899 0.14 ENSDART00000112460
dolk
dolichol kinase
chr9_+_13986427 0.14 ENSDART00000147200
cd28
CD28 molecule
chr13_+_28732101 0.14 ENSDART00000015773
ldb1a
LIM domain binding 1a
chr15_-_6976851 0.14 ENSDART00000158474
ENSDART00000168943
ENSDART00000169944
si:ch73-311h14.2
si:ch73-311h14.2
chr25_+_7229046 0.14 ENSDART00000149965
ENSDART00000041820
lingo1a
leucine rich repeat and Ig domain containing 1a
chr5_-_12093618 0.14 ENSDART00000161542
lrrc74b
leucine rich repeat containing 74B
chr5_+_36900157 0.13 ENSDART00000183533
ENSDART00000051184
hnrnpl
heterogeneous nuclear ribonucleoprotein L
chr3_-_21348478 0.13 ENSDART00000114906
fam171a2a
family with sequence similarity 171, member A2a
chr9_-_42861080 0.13 ENSDART00000193688
ttn.1
titin, tandem duplicate 1
chr22_-_10354381 0.13 ENSDART00000092050
stab1
stabilin 1
chr23_-_26535875 0.13 ENSDART00000135988
si:dkey-205h13.2
si:dkey-205h13.2
chr19_-_7540821 0.13 ENSDART00000143958
lix1l
limb and CNS expressed 1 like
chr15_-_20710 0.13 ENSDART00000161218
cyp2y3
cytochrome P450, family 2, subfamily Y, polypeptide 3
chr12_-_30338779 0.13 ENSDART00000192511
vwa2
von Willebrand factor A domain containing 2
chr2_-_3038904 0.13 ENSDART00000186795
guk1a
guanylate kinase 1a
chr14_-_2270973 0.13 ENSDART00000180729
pcdh2ab9
protocadherin 2 alpha b 9
chr8_+_30797363 0.13 ENSDART00000077280
mmp11a
matrix metallopeptidase 11a
chr12_+_35654749 0.12 ENSDART00000169889
ENSDART00000167873
baiap2b
BAI1-associated protein 2b
chr24_+_21973929 0.12 ENSDART00000042495
sat1b
spermidine/spermine N1-acetyltransferase 1b
chr1_+_54835131 0.12 ENSDART00000145070
si:ch211-196h16.4
si:ch211-196h16.4
chr2_-_7696287 0.12 ENSDART00000190769
CABZ01055306.1

chr4_+_75310097 0.12 ENSDART00000187088
CABZ01041913.1

chr17_-_24680965 0.12 ENSDART00000154880
arhgef33
Rho guanine nucleotide exchange factor (GEF) 33
chr10_+_43189325 0.12 ENSDART00000185584
vcanb
versican b
chr11_+_807153 0.12 ENSDART00000173289
vgll4b
vestigial-like family member 4b
chr1_+_54834119 0.12 ENSDART00000140020
si:ch211-196h16.4
si:ch211-196h16.4
chr23_-_44226556 0.12 ENSDART00000149115
zgc:158659
zgc:158659
chr6_-_54126463 0.12 ENSDART00000161059
tusc2a
tumor suppressor candidate 2a
chr6_-_54180516 0.12 ENSDART00000149945
rps10
ribosomal protein S10
chr1_+_14073891 0.12 ENSDART00000021693
ank2a
ankyrin 2a, neuronal
chr11_-_3629201 0.12 ENSDART00000136577
ENSDART00000132121
itih3a
inter-alpha-trypsin inhibitor heavy chain 3a
chr4_-_4932619 0.12 ENSDART00000103293
ndufa5
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5
chr13_+_21779975 0.11 ENSDART00000021556
si:ch211-51a6.2
si:ch211-51a6.2
chr10_+_20113830 0.11 ENSDART00000139722
dmtn
dematin actin binding protein
chr6_-_59505589 0.11 ENSDART00000170685
gli1
GLI family zinc finger 1
chr17_+_51627209 0.11 ENSDART00000056886
zgc:113142
zgc:113142
chr10_-_25591194 0.11 ENSDART00000131640
tiam1a
T cell lymphoma invasion and metastasis 1a
chr19_+_48018464 0.11 ENSDART00000172307
ENSDART00000163848
UBE2M
si:ch1073-205c8.3
chr10_-_17284055 0.11 ENSDART00000167464
GNAZ
G protein subunit alpha z
chr7_-_57332915 0.11 ENSDART00000162653
BX470176.1

chr2_+_24177006 0.11 ENSDART00000132582
map4l
microtubule associated protein 4 like
chr9_-_8670158 0.11 ENSDART00000077296
col4a1
collagen, type IV, alpha 1
chr21_+_17110598 0.11 ENSDART00000101282
ENSDART00000191864
bcr
breakpoint cluster region
chr1_-_27743985 0.11 ENSDART00000165515
si:dkey-29d5.2
si:dkey-29d5.2
chr23_-_30787932 0.11 ENSDART00000135771
myt1a
myelin transcription factor 1a
chr14_+_6962271 0.10 ENSDART00000148447
ENSDART00000149114
ENSDART00000149492
ENSDART00000148394
hnrnpaba
heterogeneous nuclear ribonucleoprotein A/Ba
chr3_-_27646070 0.10 ENSDART00000122031
ENSDART00000151027
si:ch211-157c3.4
si:ch211-157c3.4
chr15_-_28677725 0.10 ENSDART00000060255
blmh
bleomycin hydrolase
chr1_+_5485799 0.10 ENSDART00000022307
atic
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
chr2_+_47623202 0.10 ENSDART00000154465
si:ch211-165b10.3
si:ch211-165b10.3
chr16_+_25095483 0.10 ENSDART00000155032
si:ch211-261d7.3
si:ch211-261d7.3
chr14_-_2004291 0.10 ENSDART00000114039
pcdh2g5
protocadherin 2 gamma 5
chr15_-_12360409 0.10 ENSDART00000164596
tmprss13a
transmembrane protease, serine 13a
chr7_-_38340674 0.10 ENSDART00000075782
slc7a10a
solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10a
chr24_-_31194847 0.10 ENSDART00000158808
cnn3a
calponin 3, acidic a
chr18_+_19972853 0.10 ENSDART00000180071
skor1b
SKI family transcriptional corepressor 1b
chr21_-_20733615 0.10 ENSDART00000145544
si:ch211-22d5.2
si:ch211-22d5.2
chr25_+_12494079 0.10 ENSDART00000163508
map1lc3b
microtubule-associated protein 1 light chain 3 beta
chr23_+_36306539 0.09 ENSDART00000053267
hnrnpa1b
heterogeneous nuclear ribonucleoprotein A1b
chr21_+_36774542 0.09 ENSDART00000130790
prr7
proline rich 7 (synaptic)
chr20_+_3277620 0.09 ENSDART00000067397
ENSDART00000135194
ndufaf7
NADH dehydrogenase (ubiquinone) complex I, assembly factor 7
chr21_-_22709251 0.09 ENSDART00000140032
si:dkeyp-69c1.9
si:dkeyp-69c1.9
chr15_-_22147860 0.09 ENSDART00000149784
scn3b
sodium channel, voltage-gated, type III, beta
chr17_+_24632440 0.09 ENSDART00000157092
map4k3b
mitogen-activated protein kinase kinase kinase kinase 3b
chr2_-_32768951 0.09 ENSDART00000004712
bfsp2
beaded filament structural protein 2, phakinin
chr10_-_1827225 0.09 ENSDART00000058627
epb41l4a
erythrocyte membrane protein band 4.1 like 4A
chr7_-_41968171 0.09 ENSDART00000188027
neto2b
neuropilin (NRP) and tolloid (TLL)-like 2b
chr1_-_51720633 0.09 ENSDART00000045894
rnaseh2a
ribonuclease H2, subunit A
chr14_+_35806605 0.09 ENSDART00000173093
gria2b
glutamate receptor, ionotropic, AMPA 2b
chr3_+_17537352 0.08 ENSDART00000104549
hcrt
hypocretin (orexin) neuropeptide precursor
chr21_+_17768174 0.08 ENSDART00000141380
rxraa
retinoid X receptor, alpha a
chr14_-_2355833 0.08 ENSDART00000157677
PCDHGC3 (1 of many)
si:ch73-233f7.6
chr25_+_26895394 0.08 ENSDART00000155820
si:dkey-42p14.3
si:dkey-42p14.3
chr12_+_45677293 0.08 ENSDART00000152850
ENSDART00000153047
si:ch73-111m19.2
si:ch73-111m19.2
chr23_+_9206350 0.08 ENSDART00000136236
si:dkey-66g10.2
si:dkey-66g10.2
chr1_-_34335752 0.08 ENSDART00000140157
si:dkey-24h22.5
si:dkey-24h22.5
chr20_+_30445971 0.08 ENSDART00000153150
myt1la
myelin transcription factor 1-like, a
chr4_+_64339299 0.08 ENSDART00000191590
si:ch211-223a21.1
si:ch211-223a21.1
chr2_+_45068366 0.08 ENSDART00000142175
si:dkey-76d14.2
si:dkey-76d14.2
chr2_+_18988407 0.08 ENSDART00000170216
glula
glutamate-ammonia ligase (glutamine synthase) a
chr7_+_30867008 0.08 ENSDART00000193106
apba2b
amyloid beta (A4) precursor protein-binding, family A, member 2b
chr23_-_36306337 0.08 ENSDART00000142760
ENSDART00000136929
ENSDART00000143340
cbx5
chromobox homolog 5 (HP1 alpha homolog, Drosophila)
chr14_-_31151148 0.08 ENSDART00000026569
gpc4
glypican 4
chr7_-_28413224 0.08 ENSDART00000076502
rerglb
RERG/RAS-like b
chr6_+_8176486 0.08 ENSDART00000193308
nfil3-5
nuclear factor, interleukin 3 regulated, member 5
chr14_+_6963312 0.07 ENSDART00000150050
hnrnpaba
heterogeneous nuclear ribonucleoprotein A/Ba
chr7_+_27290548 0.07 ENSDART00000100998
sox6
SRY (sex determining region Y)-box 6
chr25_+_13620555 0.07 ENSDART00000163642
si:ch211-172l8.4
si:ch211-172l8.4
chr5_-_38179220 0.07 ENSDART00000147701
si:ch211-284e13.11
si:ch211-284e13.11
chr1_-_28607353 0.07 ENSDART00000191210
FO907124.1

chr10_-_25628555 0.07 ENSDART00000143978
tiam1a
T cell lymphoma invasion and metastasis 1a

Network of associatons between targets according to the STRING database.

First level regulatory network of sox4a+sox4b

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 GO:0016116 tetraterpenoid metabolic process(GO:0016108) tetraterpenoid biosynthetic process(GO:0016109) carotenoid metabolic process(GO:0016116) carotenoid biosynthetic process(GO:0016117) xanthophyll metabolic process(GO:0016122) xanthophyll biosynthetic process(GO:0016123) zeaxanthin metabolic process(GO:1901825) zeaxanthin biosynthetic process(GO:1901827)
0.1 0.5 GO:0043152 induction of bacterial agglutination(GO:0043152)
0.1 0.3 GO:0003156 regulation of organ formation(GO:0003156)
0.1 0.4 GO:0042985 negative regulation of glycoprotein biosynthetic process(GO:0010561) negative regulation of amyloid precursor protein biosynthetic process(GO:0042985) negative regulation of glycoprotein metabolic process(GO:1903019)
0.1 0.9 GO:1902299 pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299)
0.1 0.4 GO:0006642 triglyceride mobilization(GO:0006642)
0.1 0.4 GO:0007412 axon target recognition(GO:0007412)
0.1 0.5 GO:0090385 phagosome-lysosome fusion(GO:0090385)
0.1 0.3 GO:0033986 response to methanol(GO:0033986) cellular response to methanol(GO:0071405)
0.0 0.4 GO:0042989 sequestering of actin monomers(GO:0042989)
0.0 0.2 GO:0045056 transcytosis(GO:0045056)
0.0 0.4 GO:0036075 endochondral ossification(GO:0001958) replacement ossification(GO:0036075)
0.0 0.1 GO:0021563 glossopharyngeal nerve development(GO:0021563)
0.0 0.4 GO:0061303 cornea development in camera-type eye(GO:0061303)
0.0 0.1 GO:1901492 positive regulation of lymphangiogenesis(GO:1901492)
0.0 0.1 GO:0042941 D-amino acid transport(GO:0042940) D-alanine transport(GO:0042941) D-serine transport(GO:0042942)
0.0 0.1 GO:0009447 polyamine catabolic process(GO:0006598) putrescine catabolic process(GO:0009447)
0.0 0.1 GO:0051881 regulation of mitochondrial membrane potential(GO:0051881)
0.0 0.1 GO:0042745 circadian sleep/wake cycle process(GO:0022410) circadian sleep/wake cycle(GO:0042745)
0.0 0.1 GO:0086005 ventricular cardiac muscle cell action potential(GO:0086005)
0.0 0.2 GO:1902868 positive regulation of neural retina development(GO:0061075) positive regulation of retina development in camera-type eye(GO:1902868)
0.0 0.2 GO:0007525 somatic muscle development(GO:0007525)
0.0 0.1 GO:0051230 mitotic spindle disassembly(GO:0051228) spindle disassembly(GO:0051230)
0.0 0.1 GO:1990845 adaptive thermogenesis(GO:1990845)
0.0 0.6 GO:0015804 neutral amino acid transport(GO:0015804)
0.0 0.2 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.0 0.0 GO:0021961 posterior commissure morphogenesis(GO:0021961)
0.0 0.2 GO:0000459 exonucleolytic trimming involved in rRNA processing(GO:0000459) exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000467)
0.0 0.1 GO:1902038 positive regulation of hematopoietic stem cell differentiation(GO:1902038)
0.0 0.3 GO:0006208 pyrimidine nucleobase catabolic process(GO:0006208)
0.0 0.1 GO:0036072 intramembranous ossification(GO:0001957) direct ossification(GO:0036072)
0.0 0.2 GO:0099550 trans-synaptic signalling, modulating synaptic transmission(GO:0099550)
0.0 0.1 GO:0000098 sulfur amino acid catabolic process(GO:0000098)
0.0 0.1 GO:0043137 DNA replication, removal of RNA primer(GO:0043137)
0.0 0.1 GO:2000251 positive regulation of actin cytoskeleton reorganization(GO:2000251)
0.0 0.5 GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0016339)
0.0 0.3 GO:0000028 ribosomal small subunit assembly(GO:0000028)
0.0 0.4 GO:0035329 hippo signaling(GO:0035329)
0.0 0.3 GO:0030032 lamellipodium assembly(GO:0030032)
0.0 0.1 GO:0006542 glutamine biosynthetic process(GO:0006542)
0.0 0.4 GO:0046847 filopodium assembly(GO:0046847)
0.0 0.2 GO:0048679 regulation of axon regeneration(GO:0048679) regulation of neuron projection regeneration(GO:0070570)
0.0 0.3 GO:0021884 forebrain neuron development(GO:0021884)
0.0 0.3 GO:0044243 collagen catabolic process(GO:0030574) multicellular organism catabolic process(GO:0044243)
0.0 0.1 GO:0006189 'de novo' IMP biosynthetic process(GO:0006189)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.9 GO:0005854 nascent polypeptide-associated complex(GO:0005854)
0.1 0.4 GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.1 0.4 GO:0034359 mature chylomicron(GO:0034359)
0.1 0.9 GO:0042555 MCM complex(GO:0042555)
0.0 0.2 GO:0072669 tRNA-splicing ligase complex(GO:0072669)
0.0 0.2 GO:0016012 sarcoglycan complex(GO:0016012)
0.0 0.1 GO:0035301 Hedgehog signaling complex(GO:0035301)
0.0 0.1 GO:0032299 ribonuclease H2 complex(GO:0032299)
0.0 0.1 GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098)
0.0 0.1 GO:0000930 gamma-tubulin complex(GO:0000930)
0.0 0.1 GO:0005943 phosphatidylinositol 3-kinase complex, class IA(GO:0005943)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 GO:0050251 retinol isomerase activity(GO:0050251) all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity(GO:0052885)
0.1 0.4 GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.1 0.4 GO:0043140 ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518)
0.0 0.4 GO:0070325 low-density lipoprotein particle receptor binding(GO:0050750) lipoprotein particle receptor binding(GO:0070325)
0.0 0.9 GO:0003785 actin monomer binding(GO:0003785)
0.0 0.4 GO:0001733 galactosylceramide sulfotransferase activity(GO:0001733) galactose 3-O-sulfotransferase activity(GO:0050694)
0.0 0.1 GO:0017077 oxidative phosphorylation uncoupler activity(GO:0017077)
0.0 0.1 GO:0035243 protein-arginine omega-N symmetric methyltransferase activity(GO:0035243)
0.0 0.1 GO:0001223 transcription coactivator binding(GO:0001223)
0.0 0.1 GO:0004385 guanylate kinase activity(GO:0004385)
0.0 0.5 GO:0003688 DNA replication origin binding(GO:0003688)
0.0 0.2 GO:0004499 N,N-dimethylaniline monooxygenase activity(GO:0004499)
0.0 0.3 GO:0004157 dihydropyrimidinase activity(GO:0004157)
0.0 0.5 GO:0001540 beta-amyloid binding(GO:0001540)
0.0 0.1 GO:0030274 LIM domain binding(GO:0030274)
0.0 0.3 GO:0004382 guanosine-diphosphatase activity(GO:0004382) uridine-diphosphatase activity(GO:0045134)
0.0 0.1 GO:0019809 spermidine binding(GO:0019809)
0.0 0.6 GO:0005540 hyaluronic acid binding(GO:0005540)
0.0 1.0 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.0 0.7 GO:0015175 neutral amino acid transmembrane transporter activity(GO:0015175)
0.0 0.1 GO:0004985 opioid receptor activity(GO:0004985)
0.0 0.2 GO:0019911 structural constituent of myelin sheath(GO:0019911)
0.0 0.1 GO:0008349 MAP kinase kinase kinase kinase activity(GO:0008349)
0.0 0.1 GO:0008046 axon guidance receptor activity(GO:0008046)
0.0 0.0 GO:0047173 phosphatidylcholine-retinol O-acyltransferase activity(GO:0047173)
0.0 0.1 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.0 0.1 GO:0019871 sodium channel inhibitor activity(GO:0019871)
0.0 0.1 GO:0016211 glutamate-ammonia ligase activity(GO:0004356) ammonia ligase activity(GO:0016211) acid-ammonia (or amide) ligase activity(GO:0016880)
0.0 0.1 GO:0016742 hydroxymethyl-, formyl- and related transferase activity(GO:0016742)
0.0 0.1 GO:0031843 neuropeptide Y receptor binding(GO:0031841) type 2 neuropeptide Y receptor binding(GO:0031843)
0.0 0.2 GO:0070003 threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003)
0.0 0.1 GO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity(GO:0046934) phosphatidylinositol-3,4-bisphosphate 5-kinase activity(GO:0052812)
0.0 0.2 GO:0000828 inositol hexakisphosphate kinase activity(GO:0000828)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 PID P38 MK2 PATHWAY p38 signaling mediated by MAPKAP kinases
0.0 0.3 NABA PROTEOGLYCANS Genes encoding proteoglycans

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION Genes involved in Apoptosis induced DNA fragmentation
0.1 0.9 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.0 0.6 REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY Genes involved in Post-chaperonin tubulin folding pathway
0.0 0.3 REACTOME KERATAN SULFATE DEGRADATION Genes involved in Keratan sulfate degradation
0.0 0.1 REACTOME CD28 DEPENDENT VAV1 PATHWAY Genes involved in CD28 dependent Vav1 pathway
0.0 0.2 REACTOME PKA MEDIATED PHOSPHORYLATION OF CREB Genes involved in PKA-mediated phosphorylation of CREB