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PRJNA207719: Tissue specific transcriptome profiling

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Results for hoxb13a

Z-value: 0.59

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Transcription factors associated with hoxb13a

Gene Symbol Gene ID Gene Info
hoxb13a
ENSDARG00000056015 homeobox B13a

Activity profile of hoxb13a motif

Sorted Z-values of hoxb13a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr20_+_40150612 0.74 ENSDART00000143680
ENSDART00000109681
ENSDART00000101041
ENSDART00000121818
trdn
triadin
chr11_-_18253111 0.66 ENSDART00000125984
mustn1b
musculoskeletal, embryonic nuclear protein 1b
chr16_+_14002944 0.40 ENSDART00000059926
si:dkey-85k15.7
si:dkey-85k15.7
chr11_-_30611814 0.39 ENSDART00000089803
slc8a1a
solute carrier family 8 (sodium/calcium exchanger), member 1a
chr11_+_24314148 0.38 ENSDART00000171491
rem1
RAS (RAD and GEM)-like GTP-binding 1
chr17_+_15788100 0.30 ENSDART00000027667
rragd
ras-related GTP binding D
chr1_-_44940830 0.24 ENSDART00000097500
ENSDART00000134464
ENSDART00000137216
tmem176
transmembrane protein 176
chr7_-_30367650 0.23 ENSDART00000075519
aldh1a2
aldehyde dehydrogenase 1 family, member A2
chr1_+_44941031 0.23 ENSDART00000141145
si:dkey-9i23.16
si:dkey-9i23.16
chr12_+_27704015 0.23 ENSDART00000153256
cacna1g
calcium channel, voltage-dependent, T type, alpha 1G subunit
chr16_-_563235 0.21 ENSDART00000016303
irx2a
iroquois homeobox 2a
chr20_-_27733683 0.19 ENSDART00000103317
ENSDART00000138139
zgc:153157
zgc:153157
chr12_+_41697664 0.19 ENSDART00000162302
bnip3
BCL2 interacting protein 3
chr1_-_1627487 0.19 ENSDART00000166094
clic6
chloride intracellular channel 6
chr17_-_15382704 0.15 ENSDART00000005313
zgc:85722
zgc:85722
chr5_+_27434601 0.14 ENSDART00000064701
loxl2b
lysyl oxidase-like 2b
chr14_-_24761132 0.14 ENSDART00000146299
slit3
slit homolog 3 (Drosophila)
chr18_+_44649804 0.13 ENSDART00000059063
ehd2b
EH-domain containing 2b
chr20_-_52338782 0.12 ENSDART00000109735
ENSDART00000132941
si:ch1073-287p18.1
si:ch1073-287p18.1
chr14_+_23184517 0.11 ENSDART00000181410
enox2
ecto-NOX disulfide-thiol exchanger 2
chr23_-_19682971 0.11 ENSDART00000048891
zgc:193598
zgc:193598
chr9_+_2333550 0.11 ENSDART00000016417
atp5mc3a
ATP synthase membrane subunit c locus 3a
chr9_-_14683574 0.11 ENSDART00000144022
pard3bb
par-3 family cell polarity regulator beta b
chr24_+_1042594 0.10 ENSDART00000109117
si:dkey-192l18.9
si:dkey-192l18.9
chr6_-_6258451 0.10 ENSDART00000081966
ENSDART00000125918
rtn4a
reticulon 4a
chr7_-_20865005 0.09 ENSDART00000190752
fis1
fission, mitochondrial 1
chr1_+_52481332 0.09 ENSDART00000074231
cldnd1b
claudin domain containing 1b
chr6_-_12644563 0.09 ENSDART00000153797
dock9b
dedicator of cytokinesis 9b
chr20_+_29743904 0.09 ENSDART00000146366
ENSDART00000153154
kidins220b
kinase D-interacting substrate 220b
chr17_-_23412705 0.09 ENSDART00000126995
si:ch211-149k12.3
si:ch211-149k12.3
chr3_+_46271911 0.08 ENSDART00000186557
ENSDART00000113531
mkl2b
MKL/myocardin-like 2b
chr5_-_46980651 0.08 ENSDART00000181022
ENSDART00000168038
edil3a
EGF-like repeats and discoidin I-like domains 3a
chr16_-_41717063 0.08 ENSDART00000084610
cep85
centrosomal protein 85
chr21_-_37733287 0.07 ENSDART00000157826
mpp1
membrane protein, palmitoylated 1
chr21_-_27273147 0.07 ENSDART00000143239
mark2a
MAP/microtubule affinity-regulating kinase 2a
chr2_-_31661609 0.07 ENSDART00000144383
si:ch211-106h4.9
si:ch211-106h4.9
chr7_-_56831621 0.07 ENSDART00000182912
senp8
SUMO/sentrin peptidase family member, NEDD8 specific
chr15_-_28596507 0.07 ENSDART00000156800
si:ch211-225b7.5
si:ch211-225b7.5
chr19_-_17526735 0.07 ENSDART00000189391
thrb
thyroid hormone receptor beta
chr21_-_27272657 0.07 ENSDART00000040754
ENSDART00000175009
mark2a
MAP/microtubule affinity-regulating kinase 2a
chr7_-_31781339 0.06 ENSDART00000142666
nap1l4b
nucleosome assembly protein 1-like 4b
chr11_-_16394971 0.06 ENSDART00000180981
ENSDART00000179925
lrig1
leucine-rich repeats and immunoglobulin-like domains 1
chr15_+_11381532 0.06 ENSDART00000124172
si:ch73-321d9.2
si:ch73-321d9.2
chr23_-_24226533 0.06 ENSDART00000109134
plekhm2
pleckstrin homology domain containing, family M (with RUN domain) member 2
chr22_+_11857356 0.05 ENSDART00000179540
mras
muscle RAS oncogene homolog
chr13_-_49802194 0.05 ENSDART00000148722
b3galnt2
beta-1,3-N-acetylgalactosaminyltransferase 2
chr3_+_32443395 0.05 ENSDART00000188447
prr12b
proline rich 12b
chr7_+_33130639 0.05 ENSDART00000142450
ENSDART00000173967
ENSDART00000173832
zgc:153219
si:ch211-194p6.7
zgc:153219
si:ch211-194p6.7
chr16_+_39485608 0.05 ENSDART00000188085
CR855318.1

chr17_-_11439815 0.04 ENSDART00000130105
psma3
proteasome subunit alpha 3
chr2_-_4070850 0.04 ENSDART00000159990
yme1l1b
YME1-like 1b
chr5_+_30520249 0.04 ENSDART00000013431
hmbsa
hydroxymethylbilane synthase a
chr16_-_27628994 0.04 ENSDART00000157407
nacad
NAC alpha domain containing
chr25_-_35599887 0.04 ENSDART00000153827
clpxb
caseinolytic mitochondrial matrix peptidase chaperone subunit b
chr25_+_25453221 0.04 ENSDART00000176822
rassf7a
Ras association (RalGDS/AF-6) domain family (N-terminal) member 7a
chr6_+_35362225 0.04 ENSDART00000133783
ENSDART00000102483
rgs4
regulator of G protein signaling 4
chr7_-_40082053 0.04 ENSDART00000083719
ENSDART00000173687
shrprbck1r
sharpin and rbck1 related
chr1_-_19079957 0.04 ENSDART00000141795
phox2ba
paired-like homeobox 2ba
chr8_+_50953776 0.04 ENSDART00000013870
zgc:56596
zgc:56596
chr22_+_15624371 0.03 ENSDART00000124868
lpl
lipoprotein lipase
chr12_-_3705862 0.03 ENSDART00000193864
ENSDART00000185857
CABZ01069040.1

chr23_-_7799184 0.03 ENSDART00000190946
ENSDART00000165427
myt1b
myelin transcription factor 1b
chr24_-_20808283 0.03 ENSDART00000143759
vipr1b
vasoactive intestinal peptide receptor 1b
chr17_-_45150763 0.03 ENSDART00000155043
ENSDART00000156786
ENSDART00000191147
tmed8
transmembrane p24 trafficking protein 8
chr17_+_31820401 0.03 ENSDART00000192607
ENSDART00000157490
eef1akmt2
EEF1A lysine methyltransferase 2
chr24_-_36238054 0.03 ENSDART00000155725
tmem241
transmembrane protein 241
chr6_+_45300746 0.02 ENSDART00000159176
BX942846.1

chr19_-_42557416 0.02 ENSDART00000163217
ENSDART00000128278
ENSDART00000162304
ENSDART00000166556
si:dkey-267n13.1
si:dkey-267n13.1
chr4_-_4387012 0.02 ENSDART00000191836
CU468826.3
Danio rerio U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1-like (LOC100331497), mRNA.
chr19_+_42071033 0.02 ENSDART00000169067
ENSDART00000183436
nfyc
nuclear transcription factor Y, gamma
chr7_-_8324927 0.02 ENSDART00000102535
f13a1b
coagulation factor XIII, A1 polypeptide b
chr25_+_19106574 0.02 ENSDART00000067332
rlbp1b
retinaldehyde binding protein 1b
chr19_-_2582858 0.02 ENSDART00000113829
cdca7b
cell division cycle associated 7b
chr5_-_61970674 0.01 ENSDART00000143161
znf541
zinc finger protein 541
chr22_+_2228919 0.01 ENSDART00000133475
znf1161
zinc finger protein 1161
chr15_-_17406056 0.01 ENSDART00000146735
tubd1
tubulin, delta 1
chr5_-_26181863 0.00 ENSDART00000098500
ccdc125
coiled-coil domain containing 125
chr3_-_31069776 0.00 ENSDART00000167462
elob
elongin B
chr1_+_19515228 0.00 ENSDART00000103091
clrn2
clarin 2
chr3_+_60044780 0.00 ENSDART00000080437
zgc:113030
zgc:113030
chr16_+_21738194 0.00 ENSDART00000163688
FP085428.1
Danio rerio si:ch211-154o6.4 (si:ch211-154o6.4), mRNA.
chr25_+_28823952 0.00 ENSDART00000067072
nfybb
nuclear transcription factor Y, beta b
chr10_-_21953643 0.00 ENSDART00000188921
ENSDART00000193569
FO744833.2

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxb13a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 GO:0035988 chondrocyte proliferation(GO:0035988)
0.1 0.4 GO:1901842 regulation of high voltage-gated calcium channel activity(GO:1901841) negative regulation of high voltage-gated calcium channel activity(GO:1901842)
0.1 0.2 GO:0061113 pancreas morphogenesis(GO:0061113)
0.0 0.1 GO:1902455 negative regulation of stem cell population maintenance(GO:1902455)
0.0 0.1 GO:0051660 establishment of centrosome localization(GO:0051660)
0.0 0.1 GO:0007624 ultradian rhythm(GO:0007624)
0.0 0.2 GO:0097345 mitochondrial outer membrane permeabilization(GO:0097345)
0.0 0.1 GO:0060231 mesenchymal to epithelial transition(GO:0060231)
0.0 0.4 GO:1990035 calcium ion import across plasma membrane(GO:0098703) calcium ion import into cell(GO:1990035)
0.0 0.1 GO:0060220 retinal cone cell fate determination(GO:0042671) eye photoreceptor cell fate commitment(GO:0042706) photoreceptor cell fate determination(GO:0043703) retinal cone cell fate commitment(GO:0046551) photoreceptor cell fate commitment(GO:0046552) camera-type eye photoreceptor cell fate commitment(GO:0060220)
0.0 0.1 GO:0016559 peroxisome fission(GO:0016559) mitochondrial fragmentation involved in apoptotic process(GO:0043653)
0.0 0.2 GO:0086010 membrane depolarization during action potential(GO:0086010)
0.0 0.2 GO:0039014 pronephric nephron tubule epithelial cell differentiation(GO:0035778) cell differentiation involved in pronephros development(GO:0039014)
0.0 0.3 GO:0032008 positive regulation of TOR signaling(GO:0032008)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0034448 EGO complex(GO:0034448) Gtr1-Gtr2 GTPase complex(GO:1990131)
0.0 0.7 GO:0033017 sarcoplasmic reticulum membrane(GO:0033017)
0.0 0.1 GO:0031231 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0008332 low voltage-gated calcium channel activity(GO:0008332)
0.0 0.4 GO:0005432 calcium:sodium antiporter activity(GO:0005432)
0.0 0.6 GO:0005246 calcium channel regulator activity(GO:0005246)
0.0 0.1 GO:0070324 thyroid hormone binding(GO:0070324)
0.0 0.2 GO:0004029 aldehyde dehydrogenase (NAD) activity(GO:0004029)
0.0 0.0 GO:0034185 apolipoprotein binding(GO:0034185)