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PRJNA207719: Tissue specific transcriptome profiling

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Results for hoxc13a

Z-value: 0.76

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Transcription factors associated with hoxc13a

Gene Symbol Gene ID Gene Info
hoxc13a
ENSDARG00000070353 homeobox C13a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxc13adr11_v1_chr23_+_36052944_36052944-0.197.6e-01Click!

Activity profile of hoxc13a motif

Sorted Z-values of hoxc13a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr25_+_31277415 0.59 ENSDART00000036275
tnni2a.4
troponin I type 2a (skeletal, fast), tandem duplicate 4
chr15_-_23647078 0.57 ENSDART00000059366
ckmb
creatine kinase, muscle b
chr25_+_31276842 0.49 ENSDART00000187238
tnni2a.4
troponin I type 2a (skeletal, fast), tandem duplicate 4
chr24_-_6158933 0.48 ENSDART00000021609
gad2
glutamate decarboxylase 2
chr15_-_25518084 0.42 ENSDART00000158594
hif1al
hypoxia-inducible factor 1, alpha subunit, like
chr3_+_59851537 0.39 ENSDART00000180997
CU693479.1

chr25_+_19947298 0.31 ENSDART00000067648
kcna6a
potassium voltage-gated channel, shaker-related, subfamily, member 6 a
chr19_+_4916233 0.31 ENSDART00000159512
ppp1r1b
protein phosphatase 1, regulatory (inhibitor) subunit 1B
chr9_+_38967998 0.29 ENSDART00000135581
map2
microtubule-associated protein 2
chr3_+_23691847 0.29 ENSDART00000078453
hoxb7a
homeobox B7a
chr14_-_3031810 0.28 ENSDART00000090213
ndst1a
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1a
chr3_-_48612078 0.25 ENSDART00000169923
ndel1b
nudE neurodevelopment protein 1-like 1b
chr1_+_18965750 0.25 ENSDART00000132379
limch1a
LIM and calponin homology domains 1a
chr1_+_20069535 0.24 ENSDART00000088653
prss12
protease, serine, 12 (neurotrypsin, motopsin)
chr14_-_3032016 0.24 ENSDART00000183461
ENSDART00000183035
ndst1a
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1a
chr22_+_18477934 0.22 ENSDART00000132684
cilp2
cartilage intermediate layer protein 2
chr21_-_25756119 0.20 ENSDART00000002341
cldnc
claudin c
chr19_-_28367413 0.19 ENSDART00000079092
si:dkey-261i16.5
si:dkey-261i16.5
chr6_+_49412754 0.18 ENSDART00000027398
kcna2a
potassium voltage-gated channel, shaker-related subfamily, member 2a
chr23_-_21471022 0.17 ENSDART00000104206
her4.2
hairy-related 4, tandem duplicate 2
chr4_-_2727491 0.17 ENSDART00000141760
ENSDART00000039083
ENSDART00000134442
slco1c1
solute carrier organic anion transporter family, member 1C1
chr1_-_40994259 0.17 ENSDART00000101562
adra2c
adrenoceptor alpha 2C
chr23_+_28582865 0.16 ENSDART00000020296
l1cama
L1 cell adhesion molecule, paralog a
chr20_-_27190393 0.16 ENSDART00000149024
btbd7
BTB (POZ) domain containing 7
chr12_+_20700961 0.15 ENSDART00000016099
si:ch211-119c20.2
si:ch211-119c20.2
chr21_+_11503212 0.14 ENSDART00000146701
si:dkey-184p9.7
si:dkey-184p9.7
chr13_-_24447332 0.14 ENSDART00000043004
slc1a4
solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
chr7_-_26518086 0.13 ENSDART00000058913
eif4a1a
eukaryotic translation initiation factor 4A1A
chr10_-_34867401 0.13 ENSDART00000145545
dclk1a
doublecortin-like kinase 1a
chr8_-_28449782 0.13 ENSDART00000062702
cebpb
CCAAT/enhancer binding protein (C/EBP), beta
chr13_+_8892784 0.12 ENSDART00000075054
ENSDART00000143705
thada
thyroid adenoma associated
chr16_+_36906693 0.11 ENSDART00000160645
si:ch73-215d9.1
si:ch73-215d9.1
chr21_-_21148623 0.11 ENSDART00000184364
ank1b
ankyrin 1, erythrocytic b
chr13_-_1349922 0.11 ENSDART00000140970
si:ch73-52p7.1
si:ch73-52p7.1
chr6_-_40098641 0.11 ENSDART00000017402
ip6k2b
inositol hexakisphosphate kinase 2b
chr4_-_16545085 0.11 ENSDART00000033188
btg1
B-cell translocation gene 1, anti-proliferative
chr4_-_23083187 0.10 ENSDART00000009768
magi2a
membrane associated guanylate kinase, WW and PDZ domain containing 2a
chr9_-_25443094 0.10 ENSDART00000105492
acvr2aa
activin A receptor type 2Aa
chr16_-_17541890 0.10 ENSDART00000131328
clcn1b
chloride channel, voltage-sensitive 1b
chr21_+_42226113 0.10 ENSDART00000170362
GABRB2 (1 of many)
gamma-aminobutyric acid type A receptor beta2 subunit
chr5_-_71838520 0.09 ENSDART00000174396
CU927890.1

chr11_-_33857911 0.09 ENSDART00000165370
nxph2b
neurexophilin 2b
chr1_-_22803147 0.09 ENSDART00000086867
tapt1b
transmembrane anterior posterior transformation 1b
chr25_-_15214161 0.09 ENSDART00000031499
wt1a
wilms tumor 1a
chr8_+_14792830 0.09 ENSDART00000139972
cacna1ea
calcium channel, voltage-dependent, R type, alpha 1E subunit a
chr14_+_36497250 0.09 ENSDART00000184727
TENM3
si:dkey-237h12.3
chr16_+_22618620 0.09 ENSDART00000185728
ENSDART00000041625
chrnb2b
cholinergic receptor, nicotinic, beta 2b
chr21_-_35419486 0.08 ENSDART00000138529
si:dkeyp-23e4.3
si:dkeyp-23e4.3
chr6_+_13779857 0.08 ENSDART00000154793
tmem198b
transmembrane protein 198b
chr13_-_10261383 0.08 ENSDART00000080808
six3a
SIX homeobox 3a
chr14_+_23811808 0.08 ENSDART00000014411
kctd16a
potassium channel tetramerization domain containing 16a
chr21_-_37790727 0.08 ENSDART00000162907
gabrb4
gamma-aminobutyric acid (GABA) A receptor, beta 4
chr9_-_1965727 0.08 ENSDART00000082354
hoxd9a
homeobox D9a
chr4_-_23082985 0.08 ENSDART00000133644
magi2a
membrane associated guanylate kinase, WW and PDZ domain containing 2a
chr12_-_4028079 0.07 ENSDART00000128676
si:ch211-180a12.2
si:ch211-180a12.2
chr17_-_3291369 0.07 ENSDART00000181840
CABZ01007222.1

chr16_+_38159758 0.07 ENSDART00000058666
ENSDART00000112165
pi4kb
phosphatidylinositol 4-kinase, catalytic, beta
chr16_-_16761164 0.07 ENSDART00000135872
si:dkey-27n14.1
si:dkey-27n14.1
chr22_+_12361317 0.07 ENSDART00000189963
ENSDART00000159614
r3hdm1
R3H domain containing 1
chr12_-_3828854 0.07 ENSDART00000158529
taok2b
TAO kinase 2b
chr13_-_2440622 0.07 ENSDART00000102767
ENSDART00000172616
fbxo9
F-box protein 9
chr18_+_17151916 0.07 ENSDART00000175488
trhr2
thyrotropin releasing hormone receptor 2
chr2_-_20323901 0.06 ENSDART00000125531
plppr5a
phospholipid phosphatase related 5a
chr25_-_31739309 0.06 ENSDART00000098896
acot19
acyl-CoA thioesterase 19
chr22_+_30184039 0.06 ENSDART00000049075
add3a
adducin 3 (gamma) a
chr22_+_24214665 0.06 ENSDART00000163980
ENSDART00000167996
glrx2
glutaredoxin 2
chr19_+_7506380 0.06 ENSDART00000182837
prcc
papillary renal cell carcinoma (translocation-associated)
chr25_-_1720736 0.06 ENSDART00000097256
SLC6A13
solute carrier family 6 member 13
chr22_+_24215007 0.06 ENSDART00000162227
glrx2
glutaredoxin 2
chr9_-_1959917 0.06 ENSDART00000082359
hoxd3a
homeobox D3a
chr22_+_10676981 0.06 ENSDART00000138016
hyal2b
hyaluronoglucosaminidase 2b
chr7_-_46777876 0.06 ENSDART00000193954
tshz3b
teashirt zinc finger homeobox 3b
chr25_-_13871118 0.05 ENSDART00000160866
cry2
cryptochrome circadian clock 2
chr19_+_20201593 0.05 ENSDART00000163026
igf2bp3
insulin-like growth factor 2 mRNA binding protein 3
chr7_-_31941330 0.05 ENSDART00000144682
bdnf
brain-derived neurotrophic factor
chr9_-_12574473 0.05 ENSDART00000191372
ENSDART00000193667
igf2bp2a
insulin-like growth factor 2 mRNA binding protein 2a
chr10_+_42589707 0.05 ENSDART00000075269
fgfr1b
fibroblast growth factor receptor 1b
chr1_-_25144439 0.05 ENSDART00000132355
fbxw7
F-box and WD repeat domain containing 7
chr2_+_38881165 0.05 ENSDART00000141850
carmil3
capping protein regulator and myosin 1 linker 3
chr14_+_16083818 0.05 ENSDART00000168462
rnf103
ring finger protein 103
chr5_-_31875645 0.05 ENSDART00000098160
tmem119b
transmembrane protein 119b
chr9_+_45428041 0.05 ENSDART00000193087
adarb1b
adenosine deaminase, RNA-specific, B1b
chr14_-_26425416 0.05 ENSDART00000088690
lman2
lectin, mannose-binding 2
chr2_-_37353098 0.05 ENSDART00000056522
skila
SKI-like proto-oncogene a
chr18_+_14633974 0.05 ENSDART00000133834
vps9d1
VPS9 domain containing 1
chr2_-_39759059 0.04 ENSDART00000007333
slc25a36a
solute carrier family 25 (pyrimidine nucleotide carrier ), member 36a
chr7_-_23873173 0.04 ENSDART00000101408
zgc:162171
zgc:162171
chr15_+_27387555 0.04 ENSDART00000018603
tbx4
T-box 4
chr22_-_16997887 0.04 ENSDART00000138233
nfia
nuclear factor I/A
chr18_+_34225520 0.04 ENSDART00000126115
v2rl1
vomeronasal 2 receptor, l1
chr3_-_7656059 0.04 ENSDART00000170917
junbb
JunB proto-oncogene, AP-1 transcription factor subunit b
chr23_+_41912151 0.04 ENSDART00000191115
podn
podocan
chr3_+_35005062 0.04 ENSDART00000181163
prkcbb
protein kinase C, beta b
chr6_+_55285578 0.04 ENSDART00000180183
zgc:109913
zgc:109913
chr18_+_48428713 0.04 ENSDART00000076861
fli1a
Fli-1 proto-oncogene, ETS transcription factor a
chr22_-_3299100 0.03 ENSDART00000160305
si:zfos-943e10.1
si:zfos-943e10.1
chr22_-_16997475 0.03 ENSDART00000090237
nfia
nuclear factor I/A
chr10_+_42589391 0.03 ENSDART00000067689
ENSDART00000075259
fgfr1b
fibroblast growth factor receptor 1b
chr11_-_16093018 0.03 ENSDART00000139309
ENSDART00000139819
SPATA1
si:dkey-205k8.5
chr2_+_56891858 0.03 ENSDART00000159912
zgc:85843
zgc:85843
chr20_-_26421112 0.03 ENSDART00000183767
ENSDART00000182330
akap12b
A kinase (PRKA) anchor protein 12b
chr20_-_26420939 0.03 ENSDART00000110883
akap12b
A kinase (PRKA) anchor protein 12b
chr24_-_26282672 0.03 ENSDART00000176663
and1
actinodin1
chr6_+_24661736 0.03 ENSDART00000169283
znf644b
zinc finger protein 644b
chr5_+_2815021 0.03 ENSDART00000020472
hpda
4-hydroxyphenylpyruvate dioxygenase a
chr2_+_24700922 0.03 ENSDART00000170467
pik3r2
phosphoinositide-3-kinase, regulatory subunit 2 (beta)
chr7_+_29890292 0.03 ENSDART00000170403
ENSDART00000168600
tln2a
talin 2a
chr16_-_26296477 0.03 ENSDART00000157553
erfl1
Ets2 repressor factor like 1
chr20_+_51006362 0.02 ENSDART00000028084
mpp5b
membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5)
chr19_+_43017931 0.02 ENSDART00000132213
nkain1
sodium/potassium transporting ATPase interacting 1
chr17_-_31221655 0.02 ENSDART00000145010
ENSDART00000137834
ENSDART00000132858
pcmtl
l-isoaspartyl protein carboxyl methyltransferase, like
chr17_+_42274825 0.02 ENSDART00000020156
pax1a
paired box 1a
chr4_+_37406676 0.02 ENSDART00000130981
si:ch73-134f24.1
si:ch73-134f24.1
chr6_-_19664848 0.02 ENSDART00000159749
usp43a
ubiquitin specific peptidase 43a
chr4_+_73672430 0.02 ENSDART00000174310
ENSDART00000150505
si:dkey-262g12.7
si:dkey-262g12.7
chr24_+_1294176 0.02 ENSDART00000106637
si:ch73-134f24.1
si:ch73-134f24.1
chr6_-_19665114 0.01 ENSDART00000168985
usp43a
ubiquitin specific peptidase 43a
chr1_-_22370660 0.01 ENSDART00000127506
si:ch73-380n15.2
si:ch73-380n15.2
chr12_+_22560067 0.01 ENSDART00000172066
polr2a
polymerase (RNA) II (DNA directed) polypeptide A
chr18_-_2433011 0.01 ENSDART00000181922
ENSDART00000193276
CR769778.1

chr7_+_5905091 0.01 ENSDART00000167099
CU459186.3
Histone H3.2
chr8_+_18044257 0.00 ENSDART00000029255
glis1b
GLIS family zinc finger 1b
chr21_-_21537452 0.00 ENSDART00000142549
or133-7
odorant receptor, family H, subfamily 133, member 7
chr24_+_25032340 0.00 ENSDART00000005845
mtmr6
myotubularin related protein 6
chr9_+_22364997 0.00 ENSDART00000188054
ENSDART00000046116
crygs3
crystallin, gamma S3

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxc13a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0009449 gamma-aminobutyric acid biosynthetic process(GO:0009449)
0.0 0.5 GO:0015014 heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process(GO:0015014)
0.0 0.6 GO:0042396 phosphagen metabolic process(GO:0006599) phosphocreatine metabolic process(GO:0006603) phosphagen biosynthetic process(GO:0042396) phosphocreatine biosynthetic process(GO:0046314)
0.0 0.3 GO:0060052 neurofilament cytoskeleton organization(GO:0060052)
0.0 0.2 GO:0071881 adenylate cyclase-inhibiting adrenergic receptor signaling pathway(GO:0071881)
0.0 0.1 GO:0045724 positive regulation of cilium assembly(GO:0045724)
0.0 0.1 GO:0072314 visceral serous pericardium development(GO:0061032) glomerular visceral epithelial cell fate commitment(GO:0072149) glomerular epithelial cell fate commitment(GO:0072314)
0.0 0.4 GO:0014823 response to activity(GO:0014823)
0.0 0.2 GO:0007045 cell-substrate adherens junction assembly(GO:0007045) focal adhesion assembly(GO:0048041) regulation of focal adhesion assembly(GO:0051893) regulation of cell-substrate junction assembly(GO:0090109)
0.0 0.1 GO:1904969 bleb assembly(GO:0032060) slow muscle cell migration(GO:1904969)
0.0 0.1 GO:0031645 negative regulation of myelination(GO:0031642) negative regulation of neurological system process(GO:0031645)
0.0 0.0 GO:0033690 positive regulation of osteoblast proliferation(GO:0033690)
0.0 0.8 GO:0003009 skeletal muscle contraction(GO:0003009)
0.0 0.2 GO:0030431 sleep(GO:0030431)
0.0 0.0 GO:0006864 pyrimidine nucleotide transport(GO:0006864) mitochondrial pyrimidine nucleotide import(GO:1990519)
0.0 0.1 GO:0044030 regulation of DNA methylation(GO:0044030)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0016460 myosin II complex(GO:0016460)
0.0 0.2 GO:0043083 synaptic cleft(GO:0043083)
0.0 0.4 GO:1990907 beta-catenin-TCF complex(GO:1990907)
0.0 0.8 GO:0005861 troponin complex(GO:0005861)
0.0 0.2 GO:0044224 juxtaparanode region of axon(GO:0044224)
0.0 0.2 GO:0044295 axonal growth cone(GO:0044295)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.1 0.5 GO:0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity(GO:0015016)
0.1 0.2 GO:0032028 myosin head/neck binding(GO:0032028) myosin II head/neck binding(GO:0032034) myosin II heavy chain binding(GO:0032038)
0.0 0.2 GO:0031697 beta-1 adrenergic receptor binding(GO:0031697) type II activin receptor binding(GO:0070699)
0.0 0.6 GO:0004111 creatine kinase activity(GO:0004111) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775)
0.0 0.2 GO:0008046 axon guidance receptor activity(GO:0008046)
0.0 0.2 GO:0004938 alpha2-adrenergic receptor activity(GO:0004938)
0.0 0.1 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.0 0.0 GO:0015218 pyrimidine nucleotide transmembrane transporter activity(GO:0015218)
0.0 0.1 GO:0033906 hyaluronoglucuronidase activity(GO:0033906)
0.0 0.1 GO:0004997 thyrotropin-releasing hormone receptor activity(GO:0004997)
0.0 0.5 GO:0005251 delayed rectifier potassium channel activity(GO:0005251)
0.0 0.1 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION Genes involved in GABA synthesis, release, reuptake and degradation
0.0 0.2 REACTOME TRANSPORT OF ORGANIC ANIONS Genes involved in Transport of organic anions
0.0 0.3 REACTOME DARPP 32 EVENTS Genes involved in DARPP-32 events