PRJNA207719: Tissue specific transcriptome profiling
Gene Symbol | Gene ID | Gene Info |
---|---|---|
si_ch211-117k10.3
|
ENSDARG00000090914 | si_ch211-117k10.3 |
klf15
|
ENSDARG00000091127 | Kruppel-like factor 15 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
si:ch211-117k10.3 | dr11_v1_chr11_-_38510469_38510469 | -0.79 | 1.1e-01 | Click! |
klf15 | dr11_v1_chr23_-_35195908_35195908 | 0.32 | 6.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_55758103 | 3.40 |
ENSDART00000185964
|
CT583728.23
|
|
chr19_+_48117995 | 1.49 |
ENSDART00000170865
|
nme2b.1
|
NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 1 |
chr2_+_7192966 | 1.30 |
ENSDART00000142735
|
si:ch211-13f8.1
|
si:ch211-13f8.1 |
chr4_-_68569527 | 1.13 |
ENSDART00000192091
|
BX548011.5
|
|
chr7_+_1449999 | 1.07 |
ENSDART00000173864
|
si:cabz01101003.1
|
si:cabz01101003.1 |
chr24_-_38110779 | 1.05 |
ENSDART00000147783
|
crp
|
c-reactive protein, pentraxin-related |
chr1_-_44638058 | 0.87 |
ENSDART00000081835
|
slc43a1b
|
solute carrier family 43 (amino acid system L transporter), member 1b |
chr11_-_40504170 | 0.83 |
ENSDART00000165394
|
si:dkeyp-61b2.1
|
si:dkeyp-61b2.1 |
chr18_-_26715655 | 0.82 |
ENSDART00000181497
|
malt3
|
MALT paracaspase 3 |
chr9_-_8314028 | 0.80 |
ENSDART00000102739
|
si:ch211-145c1.1
|
si:ch211-145c1.1 |
chr18_-_26715156 | 0.74 |
ENSDART00000142043
|
malt3
|
MALT paracaspase 3 |
chr3_-_16289826 | 0.63 |
ENSDART00000131972
|
bckdhbl
|
branched chain keto acid dehydrogenase E1, beta polypeptide, like |
chr12_-_16990896 | 0.58 |
ENSDART00000152402
|
ifit12
|
interferon-induced protein with tetratricopeptide repeats 12 |
chr6_+_36821621 | 0.58 |
ENSDART00000104157
|
tmem45a
|
transmembrane protein 45a |
chr10_+_44719697 | 0.58 |
ENSDART00000158087
|
scarb1
|
scavenger receptor class B, member 1 |
chr5_+_22067570 | 0.57 |
ENSDART00000045574
|
shisa2a
|
shisa family member 2a |
chr11_+_11719575 | 0.56 |
ENSDART00000003891
|
jupa
|
junction plakoglobin a |
chr22_-_5918670 | 0.56 |
ENSDART00000141373
|
si:rp71-36a1.1
|
si:rp71-36a1.1 |
chr17_-_4395373 | 0.56 |
ENSDART00000015923
|
klhl10a
|
kelch-like family member 10a |
chr10_-_24961310 | 0.55 |
ENSDART00000037303
|
si:ch211-214k5.3
|
si:ch211-214k5.3 |
chr13_-_45523026 | 0.53 |
ENSDART00000020663
|
rhd
|
Rh blood group, D antigen |
chr25_+_150570 | 0.53 |
ENSDART00000170892
|
adam10b
|
ADAM metallopeptidase domain 10b |
chr25_-_34284144 | 0.53 |
ENSDART00000188109
|
gcnt3
|
glucosaminyl (N-acetyl) transferase 3, mucin type |
chr20_-_7080427 | 0.51 |
ENSDART00000140166
ENSDART00000023677 |
si:ch211-121a2.2
|
si:ch211-121a2.2 |
chr11_+_6010177 | 0.51 |
ENSDART00000170047
ENSDART00000022526 ENSDART00000161001 ENSDART00000188999 |
gtpbp3
|
GTP binding protein 3, mitochondrial |
chr5_+_27525477 | 0.50 |
ENSDART00000051491
|
sfrp1a
|
secreted frizzled-related protein 1a |
chr2_-_23479714 | 0.50 |
ENSDART00000167291
|
si:ch211-14p21.3
|
si:ch211-14p21.3 |
chr6_-_442163 | 0.49 |
ENSDART00000163564
ENSDART00000189134 ENSDART00000169789 |
grap2b
|
GRB2-related adaptor protein 2b |
chr18_+_46151505 | 0.48 |
ENSDART00000015034
ENSDART00000141287 |
blvrb
|
biliverdin reductase B |
chr5_-_69621227 | 0.47 |
ENSDART00000178543
|
aldh2.2
|
aldehyde dehydrogenase 2 family (mitochondrial), tandem duplicate 2 |
chr5_-_16351306 | 0.47 |
ENSDART00000168643
|
CABZ01088700.1
|
|
chr8_-_53488832 | 0.46 |
ENSDART00000191801
|
chdh
|
choline dehydrogenase |
chr24_-_4450238 | 0.45 |
ENSDART00000066835
|
fzd8a
|
frizzled class receptor 8a |
chr16_-_31976269 | 0.45 |
ENSDART00000139664
|
styk1
|
serine/threonine/tyrosine kinase 1 |
chr22_-_24285432 | 0.44 |
ENSDART00000164083
|
si:ch211-117l17.4
|
si:ch211-117l17.4 |
chr25_+_25464630 | 0.42 |
ENSDART00000150537
|
rassf7a
|
Ras association (RalGDS/AF-6) domain family (N-terminal) member 7a |
chr23_+_7518294 | 0.41 |
ENSDART00000081536
|
hck
|
HCK proto-oncogene, Src family tyrosine kinase |
chr24_-_32582378 | 0.41 |
ENSDART00000066590
|
rdh12l
|
retinol dehydrogenase 12, like |
chr18_+_33725576 | 0.40 |
ENSDART00000146816
|
si:dkey-145c18.5
|
si:dkey-145c18.5 |
chr6_-_43677125 | 0.40 |
ENSDART00000150128
|
foxp1b
|
forkhead box P1b |
chr12_+_10443785 | 0.38 |
ENSDART00000029133
|
snu13b
|
SNU13 homolog, small nuclear ribonucleoprotein b (U4/U6.U5) |
chr15_-_28618502 | 0.38 |
ENSDART00000086902
|
slc6a4a
|
solute carrier family 6 (neurotransmitter transporter), member 4a |
chr7_-_55454406 | 0.37 |
ENSDART00000108646
|
piezo1
|
piezo-type mechanosensitive ion channel component 1 |
chr21_+_11244068 | 0.36 |
ENSDART00000163432
|
arid6
|
AT-rich interaction domain 6 |
chr17_+_53418445 | 0.35 |
ENSDART00000097631
|
slc9a1b
|
solute carrier family 9 member A1b |
chr23_+_36308717 | 0.35 |
ENSDART00000131711
|
hnrnpa1b
|
heterogeneous nuclear ribonucleoprotein A1b |
chr22_+_7738966 | 0.33 |
ENSDART00000147073
|
si:ch73-44m9.5
|
si:ch73-44m9.5 |
chr8_-_34762163 | 0.32 |
ENSDART00000114080
|
setd1bb
|
SET domain containing 1B, b |
chr6_+_52918537 | 0.30 |
ENSDART00000174229
|
or137-1
|
odorant receptor, family H, subfamily 137, member 1 |
chr21_+_1143141 | 0.30 |
ENSDART00000178294
|
CABZ01086139.1
|
|
chr5_-_8636168 | 0.30 |
ENSDART00000134877
|
fyba
|
FYN binding protein a |
chr6_+_23712911 | 0.30 |
ENSDART00000167795
|
zgc:158654
|
zgc:158654 |
chr5_+_9382301 | 0.29 |
ENSDART00000124017
|
ugt2a7
|
UDP glucuronosyltransferase 2 family, polypeptide A7 |
chr22_-_13042992 | 0.29 |
ENSDART00000028787
|
ahr1b
|
aryl hydrocarbon receptor 1b |
chr20_-_16972351 | 0.29 |
ENSDART00000148312
ENSDART00000186702 |
si:ch73-74h11.1
|
si:ch73-74h11.1 |
chr5_-_35264517 | 0.29 |
ENSDART00000114981
|
ptcd2
|
pentatricopeptide repeat domain 2 |
chr2_-_51700709 | 0.29 |
ENSDART00000188601
|
tgm1l1
|
transglutaminase 1 like 1 |
chr9_-_39968820 | 0.28 |
ENSDART00000100311
|
IKZF2
|
si:zfos-1425h8.1 |
chr3_-_36690348 | 0.28 |
ENSDART00000192513
|
myh11b
|
myosin, heavy chain 11b, smooth muscle |
chr4_-_11064073 | 0.27 |
ENSDART00000150760
|
si:dkey-21h14.8
|
si:dkey-21h14.8 |
chr6_-_29377092 | 0.27 |
ENSDART00000078665
|
tmem131
|
transmembrane protein 131 |
chr4_-_73572030 | 0.27 |
ENSDART00000121652
|
znf1015
|
zinc finger protein 1015 |
chr19_-_2707048 | 0.26 |
ENSDART00000166112
|
il6
|
interleukin 6 (interferon, beta 2) |
chr4_+_9057427 | 0.26 |
ENSDART00000113867
|
slc41a2b
|
solute carrier family 41 (magnesium transporter), member 2b |
chr8_-_52938439 | 0.25 |
ENSDART00000168185
|
nr6a1a
|
nuclear receptor subfamily 6, group A, member 1a |
chr21_+_15601100 | 0.24 |
ENSDART00000180558
ENSDART00000145454 |
smarcb1b
|
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b |
chr10_-_9115383 | 0.23 |
ENSDART00000139324
|
si:dkeyp-41f9.3
|
si:dkeyp-41f9.3 |
chr22_-_1168291 | 0.23 |
ENSDART00000167724
|
si:ch1073-181h11.4
|
si:ch1073-181h11.4 |
chr22_-_4872418 | 0.23 |
ENSDART00000132360
|
si:ch73-256j6.6
|
si:ch73-256j6.6 |
chr7_-_5711197 | 0.22 |
ENSDART00000134367
|
si:dkey-10h3.2
|
si:dkey-10h3.2 |
chr4_-_75505048 | 0.22 |
ENSDART00000163665
|
si:dkey-71l4.5
|
si:dkey-71l4.5 |
chr22_-_17474583 | 0.22 |
ENSDART00000148027
|
si:ch211-197g15.8
|
si:ch211-197g15.8 |
chr16_+_9713850 | 0.21 |
ENSDART00000164103
|
ecm1b
|
extracellular matrix protein 1b |
chr20_-_48516765 | 0.21 |
ENSDART00000150200
|
si:zfos-223e1.2
|
si:zfos-223e1.2 |
chr12_-_4540564 | 0.21 |
ENSDART00000106566
|
CABZ01030107.1
|
|
chr5_-_71838520 | 0.20 |
ENSDART00000174396
|
CU927890.1
|
|
chr2_+_44977889 | 0.20 |
ENSDART00000144024
|
alg3
|
asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase) |
chr6_-_42003780 | 0.19 |
ENSDART00000032527
|
cav3
|
caveolin 3 |
chr24_-_11467004 | 0.18 |
ENSDART00000144316
|
pxdc1b
|
PX domain containing 1b |
chr5_-_30074332 | 0.17 |
ENSDART00000147963
|
bco2a
|
beta-carotene oxygenase 2a |
chr14_+_48960078 | 0.16 |
ENSDART00000165514
|
mif
|
macrophage migration inhibitory factor |
chr10_+_33382858 | 0.15 |
ENSDART00000063662
|
mdh2
|
malate dehydrogenase 2, NAD (mitochondrial) |
chr14_-_15154695 | 0.15 |
ENSDART00000160677
|
uvssa
|
UV-stimulated scaffold protein A |
chr22_-_24284961 | 0.15 |
ENSDART00000141230
|
si:ch211-117l17.4
|
si:ch211-117l17.4 |
chr7_-_71331690 | 0.15 |
ENSDART00000149682
|
dhx15
|
DEAH (Asp-Glu-Ala-His) box helicase 15 |
chr21_+_25660613 | 0.15 |
ENSDART00000134017
|
si:dkey-17e16.15
|
si:dkey-17e16.15 |
chr21_-_45086170 | 0.14 |
ENSDART00000188963
|
rapgef6
|
Rap guanine nucleotide exchange factor (GEF) 6 |
chr12_+_5530247 | 0.14 |
ENSDART00000114637
|
ace
|
angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 |
chr17_+_33313566 | 0.13 |
ENSDART00000045040
|
si:ch211-132f19.7
|
si:ch211-132f19.7 |
chr2_-_48512450 | 0.13 |
ENSDART00000160132
|
CR391991.1
|
|
chr8_+_35356944 | 0.13 |
ENSDART00000143243
|
si:dkeyp-14d3.1
|
si:dkeyp-14d3.1 |
chr9_-_50000144 | 0.11 |
ENSDART00000123416
|
scn1a
|
sodium channel, voltage-gated, type I, alpha |
chr8_-_13722682 | 0.10 |
ENSDART00000142052
|
si:dkey-258f14.2
|
si:dkey-258f14.2 |
chr22_-_6219674 | 0.10 |
ENSDART00000182582
|
si:ch211-274k16.2
|
si:ch211-274k16.2 |
chr19_+_13994563 | 0.09 |
ENSDART00000164696
|
tmem222b
|
transmembrane protein 222b |
chr19_-_46037835 | 0.08 |
ENSDART00000163815
|
nup153
|
nucleoporin 153 |
chr8_+_8947623 | 0.08 |
ENSDART00000131215
|
slc35a2
|
solute carrier family 35 (UDP-galactose transporter), member 2 |
chr1_+_7414318 | 0.08 |
ENSDART00000127426
|
si:ch73-383l1.1
|
si:ch73-383l1.1 |
chr7_+_13918349 | 0.08 |
ENSDART00000172772
ENSDART00000173384 |
si:cabz01059983.1
|
si:cabz01059983.1 |
chr22_+_12477996 | 0.07 |
ENSDART00000177704
|
CR847870.3
|
|
chr10_+_5645887 | 0.07 |
ENSDART00000171426
|
pdzph1
|
PDZ and pleckstrin homology domains 1 |
chr24_+_42131564 | 0.07 |
ENSDART00000153854
|
wwp1
|
WW domain containing E3 ubiquitin protein ligase 1 |
chr3_+_52467879 | 0.07 |
ENSDART00000156039
|
adgre5a
|
adhesion G protein-coupled receptor E5a |
chr21_-_43117327 | 0.06 |
ENSDART00000122352
|
p4ha2
|
procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide 2 |
chr22_+_26853254 | 0.06 |
ENSDART00000182487
|
tmem186
|
transmembrane protein 186 |
chr22_-_6777976 | 0.06 |
ENSDART00000187946
|
CT583625.5
|
|
chr20_+_35279968 | 0.05 |
ENSDART00000168216
ENSDART00000153332 |
fam49a
|
family with sequence similarity 49, member A |
chr4_+_65306260 | 0.04 |
ENSDART00000167558
|
si:dkey-14o6.8
|
si:dkey-14o6.8 |
chr14_-_32089117 | 0.04 |
ENSDART00000158014
|
si:ch211-69b22.5
|
si:ch211-69b22.5 |
chr24_+_28525507 | 0.04 |
ENSDART00000191121
|
arhgap29a
|
Rho GTPase activating protein 29a |
chr3_+_23703704 | 0.04 |
ENSDART00000024256
|
hoxb6a
|
homeobox B6a |
chr7_-_71331499 | 0.03 |
ENSDART00000081245
|
dhx15
|
DEAH (Asp-Glu-Ala-His) box helicase 15 |
chr11_-_19501439 | 0.03 |
ENSDART00000158328
ENSDART00000103983 |
slc2a9l1
|
solute carrier family 2 (facilitated glucose transporter), member 9-like 1 |
chr21_+_13389499 | 0.02 |
ENSDART00000151268
|
zgc:113162
|
zgc:113162 |
chr10_-_43113731 | 0.02 |
ENSDART00000138099
|
tmem167a
|
transmembrane protein 167A |
chr7_+_44445595 | 0.02 |
ENSDART00000108766
|
cdh5
|
cadherin 5 |
chr8_-_23776399 | 0.01 |
ENSDART00000114800
|
INAVA
|
si:ch211-163l21.4 |
chr5_-_36916790 | 0.01 |
ENSDART00000143827
|
kptn
|
kaptin (actin binding protein) |
chr16_+_11029762 | 0.01 |
ENSDART00000091183
|
erfl3
|
Ets2 repressor factor like 3 |
chr16_+_10918252 | 0.00 |
ENSDART00000172949
|
pou2f2a
|
POU class 2 homeobox 2a |
chr15_-_23376541 | 0.00 |
ENSDART00000078570
|
c1qtnf5
|
C1q and TNF related 5 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.6 | GO:0043654 | recognition of apoptotic cell(GO:0043654) |
0.2 | 0.5 | GO:0019695 | choline metabolic process(GO:0019695) |
0.2 | 0.5 | GO:0060898 | spinal cord radial glial cell differentiation(GO:0021531) eye field cell fate commitment involved in camera-type eye formation(GO:0060898) |
0.1 | 0.6 | GO:0002159 | desmosome assembly(GO:0002159) |
0.1 | 0.4 | GO:0006837 | serotonin transport(GO:0006837) serotonin uptake(GO:0051610) |
0.1 | 1.5 | GO:0006228 | UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051) |
0.1 | 0.4 | GO:0010482 | ventriculo bulbo valve development(GO:0003173) epidermal cell division(GO:0010481) regulation of epidermal cell division(GO:0010482) |
0.1 | 0.5 | GO:0072488 | ammonium transmembrane transport(GO:0072488) |
0.0 | 0.3 | GO:0006953 | acute-phase response(GO:0006953) |
0.0 | 0.4 | GO:0097369 | sodium ion import(GO:0097369) sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118) |
0.0 | 0.9 | GO:0015804 | neutral amino acid transport(GO:0015804) |
0.0 | 0.2 | GO:0006283 | transcription-coupled nucleotide-excision repair(GO:0006283) |
0.0 | 0.5 | GO:0002098 | tRNA wobble uridine modification(GO:0002098) |
0.0 | 0.3 | GO:2000574 | regulation of microtubule motor activity(GO:2000574) |
0.0 | 0.2 | GO:0046716 | muscle cell cellular homeostasis(GO:0046716) |
0.0 | 0.5 | GO:0006509 | membrane protein ectodomain proteolysis(GO:0006509) |
0.0 | 1.3 | GO:0007098 | centrosome cycle(GO:0007098) |
0.0 | 0.5 | GO:0030513 | positive regulation of BMP signaling pathway(GO:0030513) |
0.0 | 0.2 | GO:0006108 | malate metabolic process(GO:0006108) |
0.0 | 0.1 | GO:0016121 | carotene metabolic process(GO:0016119) carotene catabolic process(GO:0016121) terpene metabolic process(GO:0042214) terpene catabolic process(GO:0046247) |
0.0 | 0.3 | GO:0051568 | histone H3-K4 methylation(GO:0051568) |
0.0 | 0.3 | GO:0018149 | peptide cross-linking(GO:0018149) |
0.0 | 0.4 | GO:0000470 | maturation of LSU-rRNA(GO:0000470) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.4 | GO:0031428 | box C/D snoRNP complex(GO:0031428) |
0.0 | 0.9 | GO:0030057 | desmosome(GO:0030057) |
0.0 | 0.2 | GO:0035060 | brahma complex(GO:0035060) |
0.0 | 0.3 | GO:0034751 | aryl hydrocarbon receptor complex(GO:0034751) |
0.0 | 0.3 | GO:0048188 | Set1C/COMPASS complex(GO:0048188) |
0.0 | 0.8 | GO:0044853 | caveola(GO:0005901) plasma membrane raft(GO:0044853) |
0.0 | 1.3 | GO:0016324 | apical plasma membrane(GO:0016324) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.5 | GO:1902945 | metalloendopeptidase activity involved in amyloid precursor protein catabolic process(GO:1902945) |
0.1 | 0.4 | GO:0015222 | serotonin:sodium symporter activity(GO:0005335) serotonin transmembrane transporter activity(GO:0015222) |
0.1 | 0.6 | GO:0030169 | low-density lipoprotein particle binding(GO:0030169) |
0.1 | 0.6 | GO:0045294 | alpha-catenin binding(GO:0045294) |
0.1 | 1.3 | GO:0005080 | protein kinase C binding(GO:0005080) |
0.1 | 1.5 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
0.0 | 0.2 | GO:0000033 | alpha-1,3-mannosyltransferase activity(GO:0000033) |
0.0 | 0.2 | GO:0071253 | connexin binding(GO:0071253) |
0.0 | 0.6 | GO:0033691 | sialic acid binding(GO:0033691) |
0.0 | 0.5 | GO:0004029 | aldehyde dehydrogenase (NAD) activity(GO:0004029) |
0.0 | 0.4 | GO:0015385 | monovalent cation:proton antiporter activity(GO:0005451) sodium:proton antiporter activity(GO:0015385) potassium:proton antiporter activity(GO:0015386) |
0.0 | 0.2 | GO:0030060 | L-malate dehydrogenase activity(GO:0030060) |
0.0 | 1.0 | GO:0017147 | Wnt-protein binding(GO:0017147) |
0.0 | 0.5 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) |
0.0 | 0.9 | GO:0015175 | neutral amino acid transmembrane transporter activity(GO:0015175) |
0.0 | 1.1 | GO:0015485 | cholesterol binding(GO:0015485) |
0.0 | 0.3 | GO:0003810 | protein-glutamine gamma-glutamyltransferase activity(GO:0003810) |
0.0 | 0.1 | GO:0010436 | beta-carotene 15,15'-monooxygenase activity(GO:0003834) carotenoid dioxygenase activity(GO:0010436) |
0.0 | 0.4 | GO:0022833 | mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833) |
0.0 | 1.6 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.0 | 0.1 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.0 | 0.2 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.1 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.0 | 0.6 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
0.0 | 0.5 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.0 | 0.3 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
0.0 | 0.4 | REACTOME REGULATION OF SIGNALING BY CBL | Genes involved in Regulation of signaling by CBL |
0.0 | 0.5 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |