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PRJNA207719: Tissue specific transcriptome profiling

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Results for lmx1a

Z-value: 0.53

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Transcription factors associated with lmx1a

Gene Symbol Gene ID Gene Info
lmx1a
ENSDARG00000020354 LIM homeobox transcription factor 1, alpha

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
lmx1adr11_v1_chr20_+_33924235_339242360.434.7e-01Click!

Activity profile of lmx1a motif

Sorted Z-values of lmx1a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr16_-_12173399 0.64 ENSDART00000142574
clstn3
calsyntenin 3
chr16_-_12173554 0.57 ENSDART00000110567
ENSDART00000155935
clstn3
calsyntenin 3
chr16_-_28856112 0.52 ENSDART00000078543
syt11b
synaptotagmin XIb
chr9_+_24159280 0.48 ENSDART00000184624
ENSDART00000178422
hecw2a
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2a
chr23_+_20563779 0.48 ENSDART00000146008
camkvl
CaM kinase-like vesicle-associated, like
chr24_+_24461341 0.44 ENSDART00000147658
bhlhe22
basic helix-loop-helix family, member e22
chr3_+_62000822 0.40 ENSDART00000106680
rai1
retinoic acid induced 1
chr9_+_42063906 0.40 ENSDART00000048893
pcbp3
poly(rC) binding protein 3
chr5_-_21422390 0.40 ENSDART00000144198
tenm1
teneurin transmembrane protein 1
chr13_+_11440389 0.40 ENSDART00000186463
zbtb18
zinc finger and BTB domain containing 18
chr22_-_13466246 0.39 ENSDART00000134035
cntnap5b
contactin associated protein-like 5b
chr9_-_43538328 0.37 ENSDART00000140526
znf385b
zinc finger protein 385B
chr5_-_31901468 0.37 ENSDART00000147814
ENSDART00000141446
coro1cb
coronin, actin binding protein, 1Cb
chr13_-_29421331 0.36 ENSDART00000150228
chata
choline O-acetyltransferase a
chr24_+_24461558 0.36 ENSDART00000182424
bhlhe22
basic helix-loop-helix family, member e22
chr6_-_40029423 0.34 ENSDART00000103230
pfkfb4b
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4b
chr2_-_30668580 0.33 ENSDART00000087270
ctnnd2b
catenin (cadherin-associated protein), delta 2b
chr3_+_50312422 0.32 ENSDART00000157689
gas7a
growth arrest-specific 7a
chr22_-_12160283 0.32 ENSDART00000146785
ENSDART00000128176
tmem163b
transmembrane protein 163b
chr9_+_24159725 0.32 ENSDART00000137756
hecw2a
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2a
chr3_-_48716422 0.31 ENSDART00000164979
si:ch211-114m9.1
si:ch211-114m9.1
chr12_+_25600685 0.30 ENSDART00000077157
six3b
SIX homeobox 3b
chr16_+_2820340 0.30 ENSDART00000092299
ENSDART00000192931
ENSDART00000148512
si:dkey-288i20.2
si:dkey-288i20.2
chr1_+_6172786 0.29 ENSDART00000126468
prkag3a
protein kinase, AMP-activated, gamma 3a non-catalytic subunit
chr17_-_200316 0.29 ENSDART00000190561
CABZ01083778.1

chr19_+_5480327 0.29 ENSDART00000148794
jupb
junction plakoglobin b
chr9_+_34641237 0.29 ENSDART00000133996
shox
short stature homeobox
chr3_+_39853788 0.28 ENSDART00000154869
cacna1ha
calcium channel, voltage-dependent, T type, alpha 1H subunit a
chr6_+_3004972 0.23 ENSDART00000186750
ENSDART00000183862
ENSDART00000191485
ENSDART00000171014
ptprfa
protein tyrosine phosphatase, receptor type, f, a
chr20_+_52389858 0.22 ENSDART00000185863
ENSDART00000166651
arhgap39
Rho GTPase activating protein 39
chr11_-_25733910 0.22 ENSDART00000171935
brpf3a
bromodomain and PHD finger containing, 3a
chr10_-_5844915 0.21 ENSDART00000185929
ankrd55
ankyrin repeat domain 55
chr2_+_2223837 0.21 ENSDART00000101038
ENSDART00000129354
tmie
transmembrane inner ear
chr8_+_50953776 0.20 ENSDART00000013870
zgc:56596
zgc:56596
chr14_-_14607855 0.17 ENSDART00000162322
rab9b
RAB9B, member RAS oncogene family
chr15_-_22074315 0.14 ENSDART00000149830
drd2a
dopamine receptor D2a
chr1_-_50438247 0.14 ENSDART00000114098
dkk2
dickkopf WNT signaling pathway inhibitor 2
chr1_+_51039558 0.14 ENSDART00000024743
dpy30
dpy-30 histone methyltransferase complex regulatory subunit
chr21_+_25802190 0.13 ENSDART00000128987
nf2b
neurofibromin 2b (merlin)
chr6_-_12912606 0.13 ENSDART00000164640
ical1
islet cell autoantigen 1-like
chr17_+_28533102 0.13 ENSDART00000156218
mdga2a
MAM domain containing glycosylphosphatidylinositol anchor 2a
chr2_-_16217344 0.13 ENSDART00000152031
arhgef4
Rho guanine nucleotide exchange factor (GEF) 4
chr23_+_17878969 0.12 ENSDART00000154934
ENSDART00000154140
ENSDART00000156331
si:ch73-390p7.2
si:ch73-390p7.2
chr3_-_26787430 0.11 ENSDART00000087047
rab40c
RAB40c, member RAS oncogene family
chr10_-_11261565 0.11 ENSDART00000146727
ptbp3
polypyrimidine tract binding protein 3
chr1_+_10318089 0.10 ENSDART00000029774
pip4p1b
phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1b
chr10_-_11261386 0.10 ENSDART00000189946
ptbp3
polypyrimidine tract binding protein 3
chr1_-_669717 0.09 ENSDART00000160564
cyyr1
cysteine/tyrosine-rich 1
chr17_-_40956035 0.09 ENSDART00000124715
si:dkey-16j16.4
si:dkey-16j16.4
chr4_+_72723304 0.09 ENSDART00000186791
ENSDART00000158902
ENSDART00000191925
rab3ip
RAB3A interacting protein (rabin3)
chr8_-_30979494 0.08 ENSDART00000138959
si:ch211-251j10.3
si:ch211-251j10.3
chr9_-_38398789 0.08 ENSDART00000188384
znf142
zinc finger protein 142
chr1_-_51038885 0.08 ENSDART00000035150
spast
spastin
chr17_+_31914877 0.07 ENSDART00000177801
FAM196A (1 of many)
family with sequence similarity 196 member A
chr3_-_26806032 0.07 ENSDART00000143710
pigq
phosphatidylinositol glycan anchor biosynthesis, class Q
chr7_+_53879191 0.07 ENSDART00000164768
neo1a
neogenin 1a
chr24_+_17260001 0.07 ENSDART00000066765
bmi1a
bmi1 polycomb ring finger oncogene 1a
chr18_+_46382484 0.06 ENSDART00000024202
ENSDART00000142790
daw1
dynein assembly factor with WDR repeat domains 1
chr17_-_16422654 0.06 ENSDART00000150149
tdp1
tyrosyl-DNA phosphodiesterase 1
chr24_+_21540842 0.05 ENSDART00000091529
wasf3b
WAS protein family, member 3b
chr5_+_60590796 0.04 ENSDART00000159859
tmem132e
transmembrane protein 132E
chr22_-_19552796 0.04 ENSDART00000148088
ENSDART00000105485
si:dkey-78l4.14
si:dkey-78l4.14
chr17_+_22577472 0.04 ENSDART00000045099
yipf4
Yip1 domain family, member 4
chr2_+_38373272 0.04 ENSDART00000113111
psmb5
proteasome subunit beta 5
chr19_+_46158078 0.03 ENSDART00000183933
ENSDART00000164055
cap2
CAP, adenylate cyclase-associated protein, 2 (yeast)
chr19_+_32158010 0.03 ENSDART00000005255
mrpl53
mitochondrial ribosomal protein L53
chr4_-_5795309 0.03 ENSDART00000039987
pgm3
phosphoglucomutase 3
chr22_-_8725768 0.02 ENSDART00000189873
ENSDART00000181819
si:ch73-27e22.1
si:ch73-27e22.8
si:ch73-27e22.1
si:ch73-27e22.8
chr7_+_7048245 0.02 ENSDART00000001649
actn3b
actinin alpha 3b
chr15_-_43284021 0.02 ENSDART00000041677
serpine2
serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
chr9_-_27398369 0.02 ENSDART00000186499
tex30
testis expressed 30
chr24_+_17260329 0.01 ENSDART00000129554
bmi1a
bmi1 polycomb ring finger oncogene 1a

Network of associatons between targets according to the STRING database.

First level regulatory network of lmx1a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.2 GO:0051965 positive regulation of synapse assembly(GO:0051965)
0.1 0.4 GO:0008292 acetylcholine biosynthetic process(GO:0008292) acetate ester biosynthetic process(GO:1900620)
0.1 0.8 GO:2000650 negative regulation of sodium ion transmembrane transporter activity(GO:2000650)
0.1 0.3 GO:0099563 modification of synaptic structure(GO:0099563)
0.1 0.3 GO:0002159 desmosome assembly(GO:0002159)
0.0 0.1 GO:0021611 facial nerve formation(GO:0021611)
0.0 0.1 GO:0051228 protein hexamerization(GO:0034214) mitotic spindle disassembly(GO:0051228) spindle disassembly(GO:0051230)
0.0 0.2 GO:0097374 sensory neuron axon guidance(GO:0097374)
0.0 0.3 GO:0006003 fructose 2,6-bisphosphate metabolic process(GO:0006003)
0.0 0.2 GO:0071816 tail-anchored membrane protein insertion into ER membrane(GO:0071816)
0.0 0.3 GO:0086010 membrane depolarization during action potential(GO:0086010)
0.0 0.2 GO:0044154 histone H3-K14 acetylation(GO:0044154)
0.0 0.1 GO:0006348 chromatin silencing at telomere(GO:0006348)
0.0 0.3 GO:0070654 sensory epithelium regeneration(GO:0070654) epithelium regeneration(GO:1990399)
0.0 0.7 GO:0014059 dopamine secretion(GO:0014046) regulation of dopamine secretion(GO:0014059)
0.0 0.2 GO:0060088 auditory receptor cell stereocilium organization(GO:0060088)
0.0 0.3 GO:0060997 dendritic spine morphogenesis(GO:0060997)
0.0 0.4 GO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0007157)
0.0 0.3 GO:0006829 zinc II ion transport(GO:0006829)
0.0 0.1 GO:0000012 single strand break repair(GO:0000012)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0071818 BAT3 complex(GO:0071818)
0.0 0.3 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.1 GO:0070319 Golgi to plasma membrane transport vesicle(GO:0070319)
0.0 0.3 GO:0030285 integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563)
0.0 0.2 GO:0030670 phagocytic vesicle membrane(GO:0030670)
0.0 0.3 GO:0030057 desmosome(GO:0030057)
0.0 0.2 GO:0070776 H3 histone acetyltransferase complex(GO:0070775) MOZ/MORF histone acetyltransferase complex(GO:0070776)
0.0 0.1 GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex(GO:0000506)
0.0 0.3 GO:0034706 voltage-gated sodium channel complex(GO:0001518) sodium channel complex(GO:0034706)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0008332 low voltage-gated calcium channel activity(GO:0008332)
0.0 0.3 GO:0045294 alpha-catenin binding(GO:0045294)
0.0 0.4 GO:0016413 O-acetyltransferase activity(GO:0016413)
0.0 0.1 GO:0039706 co-receptor binding(GO:0039706)
0.0 0.3 GO:0003873 6-phosphofructo-2-kinase activity(GO:0003873)
0.0 0.1 GO:0048487 beta-tubulin binding(GO:0048487)
0.0 0.1 GO:0070259 tyrosyl-DNA phosphodiesterase activity(GO:0070259)
0.0 0.2 GO:0043994 H3 histone acetyltransferase activity(GO:0010484) histone acetyltransferase activity (H3-K23 specific)(GO:0043994)
0.0 0.1 GO:0034597 phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity(GO:0034597)
0.0 0.0 GO:0008179 adenylate cyclase binding(GO:0008179)
0.0 0.5 GO:0001786 phosphatidylserine binding(GO:0001786)
0.0 0.1 GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity(GO:0017176)
0.0 0.3 GO:0016208 AMP binding(GO:0016208)