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PRJNA207719: Tissue specific transcriptome profiling

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Results for raraa+rarab

Z-value: 0.51

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Transcription factors associated with raraa+rarab

Gene Symbol Gene ID Gene Info
rarab
ENSDARG00000034893 retinoic acid receptor, alpha b
raraa
ENSDARG00000056783 retinoic acid receptor, alpha a
rarab
ENSDARG00000111757 retinoic acid receptor, alpha b

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
raraadr11_v1_chr12_+_10952794_10952794-0.553.3e-01Click!
rarabdr11_v1_chr3_-_33175583_33175583-0.513.8e-01Click!

Activity profile of raraa+rarab motif

Sorted Z-values of raraa+rarab motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr22_+_38173960 0.49 ENSDART00000010537
cp
ceruloplasmin
chr4_+_1530287 0.45 ENSDART00000067446
slc38a4
solute carrier family 38, member 4
chr14_-_51855047 0.39 ENSDART00000088912
cplx1
complexin 1
chr18_+_8340886 0.38 ENSDART00000081132
cpt1b
carnitine palmitoyltransferase 1B (muscle)
chr17_+_33340675 0.26 ENSDART00000184396
ENSDART00000077553
xdh
xanthine dehydrogenase
chr22_+_21324398 0.22 ENSDART00000168509
shc2
SHC (Src homology 2 domain containing) transforming protein 2
chr10_+_19595009 0.20 ENSDART00000112276
zgc:173837
zgc:173837
chr11_-_34147205 0.18 ENSDART00000173216
atp13a3
ATPase 13A3
chr3_+_33367954 0.18 ENSDART00000103161
mpp2a
membrane protein, palmitoylated 2a (MAGUK p55 subfamily member 2)
chr13_+_28618086 0.18 ENSDART00000087001
cnnm2a
cyclin and CBS domain divalent metal cation transport mediator 2a
chr23_-_3703569 0.15 ENSDART00000143731
pacsin1a
protein kinase C and casein kinase substrate in neurons 1a
chr22_+_20208185 0.15 ENSDART00000142748
si:dkey-110c1.7
si:dkey-110c1.7
chr13_+_24834199 0.14 ENSDART00000101274
zgc:153981
zgc:153981
chr1_+_59154521 0.12 ENSDART00000130089
ENSDART00000152456
soul5l
heme-binding protein soul5, like
chr21_+_2506013 0.12 ENSDART00000162351
hmgcrb
3-hydroxy-3-methylglutaryl-CoA reductase b
chr6_-_40029423 0.12 ENSDART00000103230
pfkfb4b
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4b
chr23_-_21758253 0.10 ENSDART00000046613
vps13d
vacuolar protein sorting 13 homolog D (S. cerevisiae)
chr23_+_25822742 0.09 ENSDART00000184436
r3hdml
R3H domain containing-like
chr14_-_50892442 0.09 ENSDART00000174562
CDHR2
cadherin related family member 2
chr10_-_41450367 0.09 ENSDART00000122682
ENSDART00000189549
cabp1b
calcium binding protein 1b
chr18_+_3338228 0.09 ENSDART00000161520
gdpd4a
glycerophosphodiester phosphodiesterase domain containing 4a
chr22_-_31788170 0.08 ENSDART00000170925
pimr207
Pim proto-oncogene, serine/threonine kinase, related 207
chr7_-_69352424 0.08 ENSDART00000170714
ap1g1
adaptor-related protein complex 1, gamma 1 subunit
chr16_-_22194400 0.08 ENSDART00000186042
il6r
interleukin 6 receptor
chr18_+_1145571 0.07 ENSDART00000135055
rec114
REC114 meiotic recombination protein
chr8_-_13419049 0.07 ENSDART00000133656
pimr101
Pim proto-oncogene, serine/threonine kinase, related 101
chr14_+_36497250 0.07 ENSDART00000184727
TENM3
si:dkey-237h12.3
chr25_+_2263857 0.07 ENSDART00000076439
yars2
tyrosyl-tRNA synthetase 2, mitochondrial
chr8_-_13428740 0.07 ENSDART00000131826
CR354547.3

chr8_-_13471916 0.07 ENSDART00000146558
pimr105
Pim proto-oncogene, serine/threonine kinase, related 105
chr12_-_34427909 0.07 ENSDART00000129501
tmem235
transmembrane protein 235
chr5_-_64823750 0.07 ENSDART00000140305
lix1
limb and CNS expressed 1
chr15_+_31735931 0.06 ENSDART00000185681
ENSDART00000149137
rxfp2b
relaxin/insulin-like family peptide receptor 2b
chr19_+_5291935 0.06 ENSDART00000141237
si:dkeyp-113d7.10
si:dkeyp-113d7.10
chr14_+_41518257 0.06 ENSDART00000050037
chrnb3b
cholinergic receptor, nicotinic, beta 3b (neuronal)
chr8_-_13486258 0.06 ENSDART00000137459
pimr104
Pim proto-oncogene, serine/threonine kinase, related 104
chr5_-_3885727 0.06 ENSDART00000143250
mlxipl
MLX interacting protein like
chr8_-_13442871 0.06 ENSDART00000144887
pimr106
Pim proto-oncogene, serine/threonine kinase, related 106
chr18_+_19842569 0.06 ENSDART00000147470
iqch
IQ motif containing H
chr4_-_191736 0.06 ENSDART00000169187
ENSDART00000192054
ptpro
protein tyrosine phosphatase, receptor type, O
chr8_-_13454281 0.05 ENSDART00000141959
CR354547.2

chr24_+_37723362 0.05 ENSDART00000136836
rab11fip3
RAB11 family interacting protein 3 (class II)
chr14_-_52552875 0.05 ENSDART00000170107
ppp2r2ba
protein phosphatase 2, regulatory subunit B, beta a
chr8_-_10947205 0.05 ENSDART00000164467
pqlc2
PQ loop repeat containing 2
chr7_-_24838857 0.05 ENSDART00000179766
ENSDART00000180892
fam113
family with sequence similarity 113
chr11_+_25111846 0.05 ENSDART00000128705
ENSDART00000190058
ndrg3a
ndrg family member 3a
chr4_+_70563225 0.04 ENSDART00000159508
si:dkey-11d20.1
si:dkey-11d20.1
chr14_-_2001386 0.04 ENSDART00000170346
ENSDART00000163975
pcdh2g5
protocadherin 2 gamma 5
chr25_-_3132060 0.04 ENSDART00000014363
epx
eosinophil peroxidase
chr2_+_31948352 0.04 ENSDART00000192611
ankhb
ANKH inorganic pyrophosphate transport regulator b
chr2_+_56213694 0.04 ENSDART00000162582
upf1
upf1 regulator of nonsense transcripts homolog (yeast)
chr10_+_22890791 0.03 ENSDART00000176011
arrb2a
arrestin, beta 2a
chr17_+_46739693 0.03 ENSDART00000097810
pimr22
Pim proto-oncogene, serine/threonine kinase, related 22
chr4_+_3980247 0.03 ENSDART00000049194
gpr37b
G protein-coupled receptor 37b
chr22_-_9900378 0.02 ENSDART00000193906
znf991
zinc finger protein 991
chr2_+_3696038 0.02 ENSDART00000150499
ENSDART00000136906
ENSDART00000164152
ENSDART00000128514
ENSDART00000108964
egfra
epidermal growth factor receptor a (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian)
chr2_-_55317035 0.02 ENSDART00000169382
ENSDART00000097874
tpm4b
tropomyosin 4b
chr8_+_37168570 0.01 ENSDART00000098636
csf1b
colony stimulating factor 1b (macrophage)
chr18_+_7073130 0.00 ENSDART00000101216
ENSDART00000148947
si:dkey-88e18.2
si:dkey-88e18.2
chr18_+_43183749 0.00 ENSDART00000151166
nectin1b
nectin cell adhesion molecule 1b
chr19_+_19762183 0.00 ENSDART00000163611
ENSDART00000187604
hoxa3a
homeobox A3a
chr10_+_22891126 0.00 ENSDART00000057291
arrb2a
arrestin, beta 2a

Network of associatons between targets according to the STRING database.

First level regulatory network of raraa+rarab

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0006145 purine nucleobase catabolic process(GO:0006145)
0.0 0.2 GO:0016081 synaptic vesicle docking(GO:0016081) presynaptic dense core granule exocytosis(GO:0099525)
0.0 0.5 GO:0006825 copper ion transport(GO:0006825)
0.0 0.4 GO:0009437 carnitine metabolic process(GO:0009437)
0.0 0.1 GO:0001955 blood vessel maturation(GO:0001955)
0.0 0.2 GO:0010960 magnesium ion homeostasis(GO:0010960)
0.0 0.1 GO:0045053 protein retention in Golgi apparatus(GO:0045053)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0030121 AP-1 adaptor complex(GO:0030121)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0016416 carnitine O-palmitoyltransferase activity(GO:0004095) O-palmitoyltransferase activity(GO:0016416)
0.0 0.5 GO:0004322 ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.0 0.3 GO:0016725 oxidoreductase activity, acting on CH or CH2 groups(GO:0016725)
0.0 0.0 GO:0031701 angiotensin receptor binding(GO:0031701)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 PID VEGFR1 PATHWAY VEGFR1 specific signals
0.0 0.4 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks
0.0 0.5 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 REACTOME PURINE CATABOLISM Genes involved in Purine catabolism
0.0 0.5 REACTOME IRON UPTAKE AND TRANSPORT Genes involved in Iron uptake and transport
0.0 0.4 REACTOME ACTIVATED AMPK STIMULATES FATTY ACID OXIDATION IN MUSCLE Genes involved in Activated AMPK stimulates fatty-acid oxidation in muscle
0.0 0.4 REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE Genes involved in Amino acid transport across the plasma membrane
0.0 0.2 REACTOME SIGNAL ATTENUATION Genes involved in Signal attenuation