PRJNA207719: Tissue specific transcriptome profiling
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
rfx1a | dr11_v1_chr3_-_19200571_19200651 | 0.90 | 3.9e-02 | Click! |
rfx1b | dr11_v1_chr1_-_54100988_54100988 | 0.06 | 9.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_-_47193564 Show fit | 1.43 |
ENSDART00000172453
|
limbic system-associated membrane protein |
|
chr3_-_5664123 Show fit | 1.04 |
ENSDART00000145866
|
si:ch211-106h11.1 |
|
chr15_+_22267847 Show fit | 0.95 |
ENSDART00000110665
|
sperm autoantigenic protein 17 |
|
chr19_+_2275019 Show fit | 0.93 |
ENSDART00000136138
|
integrin, beta 8 |
|
chr25_+_34407740 Show fit | 0.91 |
ENSDART00000012677
|
si:dkey-37f18.2 |
|
chr6_+_13933464 Show fit | 0.90 |
ENSDART00000109144
|
protein tyrosine phosphatase, receptor type, Nb |
|
chr20_+_31076488 Show fit | 0.71 |
ENSDART00000136255
ENSDART00000008840 |
otoferlin a |
|
chr11_-_1291012 Show fit | 0.68 |
ENSDART00000158390
|
ATPase plasma membrane Ca2+ transporting 2 |
|
chr17_+_23937262 Show fit | 0.66 |
ENSDART00000113276
|
si:ch211-189k9.2 |
|
chr1_+_8662530 Show fit | 0.66 |
ENSDART00000054989
|
fascin actin-bundling protein 1b |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | GO:0031098 | stress-activated protein kinase signaling cascade(GO:0031098) |
0.0 | 1.3 | GO:0033627 | cell adhesion mediated by integrin(GO:0033627) |
0.1 | 1.1 | GO:0051127 | positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601) |
0.1 | 1.0 | GO:0006003 | fructose 2,6-bisphosphate metabolic process(GO:0006003) |
0.0 | 0.8 | GO:0007520 | myoblast fusion(GO:0007520) |
0.1 | 0.7 | GO:0001964 | startle response(GO:0001964) |
0.1 | 0.7 | GO:0021754 | facial nucleus development(GO:0021754) |
0.2 | 0.6 | GO:0014014 | negative regulation of gliogenesis(GO:0014014) |
0.1 | 0.6 | GO:2000463 | postsynaptic density assembly(GO:0097107) modulation of excitatory postsynaptic potential(GO:0098815) positive regulation of excitatory postsynaptic potential(GO:2000463) |
0.0 | 0.6 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | GO:0098636 | protein complex involved in cell adhesion(GO:0098636) |
0.1 | 1.2 | GO:0030992 | intraciliary transport particle B(GO:0030992) |
0.1 | 1.1 | GO:0031209 | SCAR complex(GO:0031209) |
0.0 | 1.1 | GO:0032580 | Golgi cisterna membrane(GO:0032580) |
0.0 | 0.9 | GO:0098839 | postsynaptic density membrane(GO:0098839) postsynaptic specialization membrane(GO:0099634) |
0.0 | 0.9 | GO:0030141 | secretory granule(GO:0030141) |
0.0 | 0.8 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
0.0 | 0.8 | GO:0031514 | motile cilium(GO:0031514) |
0.0 | 0.7 | GO:0034361 | very-low-density lipoprotein particle(GO:0034361) |
0.0 | 0.7 | GO:0048787 | presynaptic active zone membrane(GO:0048787) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | GO:0005178 | integrin binding(GO:0005178) |
0.1 | 1.1 | GO:0071933 | Arp2/3 complex binding(GO:0071933) |
0.1 | 1.0 | GO:0003873 | 6-phosphofructo-2-kinase activity(GO:0003873) |
0.0 | 0.8 | GO:0005343 | organic acid:sodium symporter activity(GO:0005343) |
0.2 | 0.7 | GO:0030228 | lipoprotein particle receptor activity(GO:0030228) |
0.1 | 0.7 | GO:0035612 | AP-2 adaptor complex binding(GO:0035612) |
0.0 | 0.7 | GO:0005388 | calcium-transporting ATPase activity(GO:0005388) |
0.1 | 0.6 | GO:0030160 | GKAP/Homer scaffold activity(GO:0030160) |
0.0 | 0.6 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.0 | 0.5 | GO:0016909 | JUN kinase activity(GO:0004705) SAP kinase activity(GO:0016909) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.0 | 1.0 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.0 | 0.5 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.0 | 0.5 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 0.4 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | REACTOME INTEGRIN CELL SURFACE INTERACTIONS | Genes involved in Integrin cell surface interactions |
0.0 | 0.7 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |
0.0 | 0.6 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.1 | 0.5 | REACTOME DSCAM INTERACTIONS | Genes involved in DSCAM interactions |
0.1 | 0.5 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
0.0 | 0.5 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.1 | 0.4 | REACTOME SEMA3A PAK DEPENDENT AXON REPULSION | Genes involved in Sema3A PAK dependent Axon repulsion |
0.0 | 0.4 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |
0.0 | 0.4 | REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION | Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression |
0.0 | 0.3 | REACTOME CONVERSION FROM APC C CDC20 TO APC C CDH1 IN LATE ANAPHASE | Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase |