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PRJNA207719: Tissue specific transcriptome profiling

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Results for runx3

Z-value: 0.95

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Transcription factors associated with runx3

Gene Symbol Gene ID Gene Info
runx3
ENSDARG00000052826 RUNX family transcription factor 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
runx3dr11_v1_chr13_-_45123051_451230510.856.9e-02Click!

Activity profile of runx3 motif

Sorted Z-values of runx3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr12_-_43711918 1.58 ENSDART00000193110
CU914622.2

chr19_-_5380770 0.79 ENSDART00000000221
krt91
keratin 91
chr12_-_43819253 0.68 ENSDART00000160261
ENSDART00000170045
ENSDART00000159106
si:ch73-329n5.6
si:ch73-329n5.6
chr16_+_23431189 0.56 ENSDART00000004679
icn
ictacalcin
chr15_+_6117502 0.56 ENSDART00000188293
PCP4 (1 of many)
Purkinje cell protein 4
chr20_-_34670236 0.53 ENSDART00000033325
slc25a24
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24
chr15_-_2657508 0.52 ENSDART00000102086
cldna
claudin a
chr6_-_141564 0.51 ENSDART00000151245
ENSDART00000063876
s1pr5b
sphingosine-1-phosphate receptor 5b
chr16_+_28754403 0.49 ENSDART00000103340
s100v1
S100 calcium binding protein V1
chr4_-_13518381 0.47 ENSDART00000067153
ifng1-1
interferon, gamma 1-1
chr15_+_37589698 0.43 ENSDART00000076066
ENSDART00000153894
ENSDART00000156298
lin37
lin-37 DREAM MuvB core complex component
chr19_+_37118547 0.41 ENSDART00000103163
cx30.9
connexin 30.9
chr5_-_71995108 0.38 ENSDART00000124587
fam78ab
family with sequence similarity 78, member Ab
chr20_-_48485354 0.32 ENSDART00000124040
ENSDART00000148437
insm1a
insulinoma-associated 1a
chr23_-_36313431 0.31 ENSDART00000125860
nfe2
nuclear factor, erythroid 2
chr12_+_46883785 0.31 ENSDART00000008312
fam53b
family with sequence similarity 53, member B
chr11_-_30636163 0.31 ENSDART00000140516
zgc:153665
zgc:153665
chr5_+_24059598 0.29 ENSDART00000051547
gabarapa
GABA(A) receptor-associated protein a
chr6_+_44163727 0.29 ENSDART00000064878
gxylt2
glucoside xylosyltransferase 2
chr11_-_40519886 0.28 ENSDART00000172819
miip
migration and invasion inhibitory protein
chr12_+_18744610 0.27 ENSDART00000153456
mkl1b
megakaryoblastic leukemia (translocation) 1b
chr1_-_39859626 0.27 ENSDART00000053763
dctd
dCMP deaminase
chr6_-_2154137 0.27 ENSDART00000162656
tgm5l
transglutaminase 5, like
chr19_-_72398 0.27 ENSDART00000165587
dnajc8
DnaJ (Hsp40) homolog, subfamily C, member 8
chr15_-_4037626 0.25 ENSDART00000160905
P2RY14
purinergic receptor P2Y14
chr14_-_16476863 0.24 ENSDART00000089021
canx
calnexin
chr4_+_15983541 0.23 ENSDART00000043660
copg2
coatomer protein complex, subunit gamma 2
chr20_-_14012859 0.23 ENSDART00000152429
si:ch211-22i13.2
si:ch211-22i13.2
chr22_-_30973791 0.22 ENSDART00000104728
ssuh2.2
ssu-2 homolog, tandem duplicate 2
chr8_+_18830759 0.22 ENSDART00000089079
mpnd
MPN domain containing
chr19_+_4068134 0.22 ENSDART00000158285
btr26
bloodthirsty-related gene family, member 26
chr15_-_37589600 0.22 ENSDART00000154641
proser3
proline and serine rich 3
chr7_+_25858380 0.21 ENSDART00000148780
ENSDART00000079218
mtmr1a
myotubularin related protein 1a
chr19_+_2546775 0.21 ENSDART00000148527
ENSDART00000097528
sp4
sp4 transcription factor
chr7_+_52712807 0.20 ENSDART00000174095
ENSDART00000174377
ENSDART00000174061
ENSDART00000174094
ENSDART00000110906
ENSDART00000174071
ENSDART00000174238
znf280d
zinc finger protein 280D
chr19_+_4062101 0.19 ENSDART00000166773
btr25
bloodthirsty-related gene family, member 25
chr25_-_8201983 0.19 ENSDART00000006579
saal1
serum amyloid A-like 1
chr5_+_27429872 0.19 ENSDART00000087894
zgc:165555
zgc:165555
chr16_-_54907588 0.18 ENSDART00000185709
kdf1a
keratinocyte differentiation factor 1a
chr12_+_28910762 0.18 ENSDART00000076342
ENSDART00000160939
ENSDART00000076572
rnf40
ring finger protein 40
chr23_+_36308717 0.17 ENSDART00000131711
hnrnpa1b
heterogeneous nuclear ribonucleoprotein A1b
chr1_-_43727418 0.16 ENSDART00000133715
ENSDART00000074597
ENSDART00000132542
ENSDART00000181792
bdh2
SLC9B2
3-hydroxybutyrate dehydrogenase, type 2
si:dkey-162b23.4
chr19_+_2590182 0.16 ENSDART00000162293
si:ch73-345f18.3
si:ch73-345f18.3
chr18_+_808911 0.16 ENSDART00000172518
cox5ab
cytochrome c oxidase subunit Vab
chr7_+_24888910 0.15 ENSDART00000173994
mark2b
MAP/microtubule affinity-regulating kinase 2b
chr2_-_183992 0.15 ENSDART00000126704
ENSDART00000191283
ENSDART00000034783
zgc:113518
zgc:113518
chr15_-_9321921 0.15 ENSDART00000159676
ENSDART00000033411
trappc4
trafficking protein particle complex 4
chr22_+_29994093 0.15 ENSDART00000104778
si:dkey-286j15.3
si:dkey-286j15.3
chr8_-_17184482 0.14 ENSDART00000025803
pola2
polymerase (DNA directed), alpha 2
chr22_+_11144153 0.14 ENSDART00000047442
bcor
BCL6 corepressor
chr10_-_309894 0.13 ENSDART00000163287
CABZ01049607.1

chr20_-_53321499 0.13 ENSDART00000179894
ENSDART00000127427
ENSDART00000084952
wasf1
WAS protein family, member 1
chr2_-_52841762 0.13 ENSDART00000114682
ralbp1
ralA binding protein 1
chr17_-_27382826 0.13 ENSDART00000186657
ENSDART00000155986
ENSDART00000191060
ENSDART00000077608
si:ch1073-358c10.1
si:ch1073-358c10.1
chr22_-_11520405 0.13 ENSDART00000063157
slc26a11
solute carrier family 26 (anion exchanger), member 11
chr19_-_40906161 0.13 ENSDART00000004514
bet1
Bet1 golgi vesicular membrane trafficking protein
chr8_-_18899427 0.13 ENSDART00000079840
rorca
RAR-related orphan receptor C a
chr2_+_4146606 0.13 ENSDART00000171170
mib1
mindbomb E3 ubiquitin protein ligase 1
chr24_-_18659147 0.12 ENSDART00000166039
zgc:66014
zgc:66014
chr18_-_50524017 0.12 ENSDART00000150013
ENSDART00000149912
cd276
CD276 molecule
chr25_-_225964 0.11 ENSDART00000193424
CABZ01113818.1

chr13_+_8255106 0.11 ENSDART00000080465
hells
helicase, lymphoid specific
chr17_+_37310663 0.10 ENSDART00000157122
elmsan1b
ELM2 and Myb/SANT-like domain containing 1b
chr20_-_2725930 0.10 ENSDART00000081643
akirin2
akirin 2
chr2_+_16173999 0.10 ENSDART00000177639
ENSDART00000157601
ENSDART00000190186
ENSDART00000045933
sh3glb1b
SH3-domain GRB2-like endophilin B1b
chr15_+_29292154 0.10 ENSDART00000137817
rap1gap2a
RAP1 GTPase activating protein 2a
chr22_-_14161309 0.10 ENSDART00000133365
si:ch211-246m6.5
si:ch211-246m6.5
chr12_-_3978306 0.10 ENSDART00000149473
ENSDART00000114857
ppp4cb
protein phosphatase 4, catalytic subunit b
chr16_-_7228276 0.09 ENSDART00000149030
nt5c3a
5'-nucleotidase, cytosolic IIIA
chr6_+_39930825 0.09 ENSDART00000182352
ENSDART00000186643
ENSDART00000190513
ENSDART00000065092
ENSDART00000188645
itpr1a
inositol 1,4,5-trisphosphate receptor, type 1a
chr16_+_35870456 0.08 ENSDART00000184321
thrap3a
thyroid hormone receptor associated protein 3a
chr25_-_210730 0.06 ENSDART00000187580
FP236318.1

chr9_+_37141836 0.06 ENSDART00000024555
gli2a
GLI family zinc finger 2a
chr3_-_3372259 0.05 ENSDART00000140482
si:dkey-46g23.1
si:dkey-46g23.1
chr19_+_42219165 0.05 ENSDART00000163192
CU896644.1

chr14_-_24332786 0.05 ENSDART00000173164
fam13b
family with sequence similarity 13, member B
chr3_-_31086770 0.05 ENSDART00000103421
zgc:153292
zgc:153292
chr18_-_50523399 0.05 ENSDART00000033591
cd276
CD276 molecule
chr1_+_46598764 0.04 ENSDART00000053240
cab39l
calcium binding protein 39-like
chr19_-_24443867 0.04 ENSDART00000163763
ENSDART00000043133
thbs3b
thrombospondin 3b
chr2_+_49864219 0.04 ENSDART00000187744
rpl37
ribosomal protein L37
chr7_+_17938128 0.04 ENSDART00000141044
mta2
metastasis associated 1 family, member 2
chr3_-_25369557 0.04 ENSDART00000055491
smurf2
SMAD specific E3 ubiquitin protein ligase 2
chr6_+_38896158 0.04 ENSDART00000029930
ENSDART00000131347
slc48a1b
solute carrier family 48 (heme transporter), member 1b
chr3_+_6291635 0.03 ENSDART00000185055
ENSDART00000157707
si:ch211-12p12.2
si:ch211-12p12.2
chr1_-_18446161 0.03 ENSDART00000089442
klhl5
kelch-like family member 5
chr5_+_62009765 0.03 ENSDART00000134335
akap10
A kinase (PRKA) anchor protein 10
chr2_-_56348727 0.02 ENSDART00000060745
uba52
ubiquitin A-52 residue ribosomal protein fusion product 1
chr6_-_10740365 0.02 ENSDART00000150942
sp3b
Sp3b transcription factor
chr5_+_62009930 0.02 ENSDART00000082872
akap10
A kinase (PRKA) anchor protein 10
chr13_+_45524475 0.01 ENSDART00000074567
ENSDART00000019113
maco1b
macoilin 1b
chr24_-_14212521 0.01 ENSDART00000130825
xkr9
XK, Kell blood group complex subunit-related family, member 9
chr1_+_39859782 0.01 ENSDART00000149984
irf2a
interferon regulatory factor 2a
chr15_+_24005289 0.01 ENSDART00000088648
myo18ab
myosin XVIIIAb
chr7_+_17937922 0.01 ENSDART00000147189
mta2
metastasis associated 1 family, member 2
chr5_+_71995056 0.00 ENSDART00000180574
PLPP7 (1 of many)
phospholipid phosphatase 7 (inactive)

Network of associatons between targets according to the STRING database.

First level regulatory network of runx3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0009162 deoxyribonucleoside monophosphate metabolic process(GO:0009162)
0.0 0.3 GO:0060221 retinal rod cell differentiation(GO:0060221)
0.0 0.1 GO:0021519 optic cup formation involved in camera-type eye development(GO:0003408) spinal cord association neuron specification(GO:0021519)
0.0 0.3 GO:0016266 O-glycan processing(GO:0016266)
0.0 0.2 GO:0010481 epidermal cell division(GO:0010481) regulation of epidermal cell division(GO:0010482)
0.0 0.2 GO:0019184 nonribosomal peptide biosynthetic process(GO:0019184)
0.0 0.3 GO:0045646 regulation of erythrocyte differentiation(GO:0045646)
0.0 0.3 GO:0043562 cellular response to nitrogen starvation(GO:0006995) cellular response to nitrogen levels(GO:0043562)
0.0 0.1 GO:0048618 post-embryonic foregut morphogenesis(GO:0048618)
0.0 0.1 GO:0048280 vesicle fusion with Golgi apparatus(GO:0048280)
0.0 0.2 GO:0006123 mitochondrial electron transport, cytochrome c to oxygen(GO:0006123)
0.0 0.3 GO:0010972 negative regulation of G2/M transition of mitotic cell cycle(GO:0010972)
0.0 0.3 GO:0018149 peptide cross-linking(GO:0018149)
0.0 0.1 GO:0044030 regulation of DNA methylation(GO:0044030)
0.0 0.5 GO:0070830 apical junction assembly(GO:0043297) bicellular tight junction assembly(GO:0070830)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0005658 alpha DNA polymerase:primase complex(GO:0005658)
0.0 0.8 GO:0017053 transcriptional repressor complex(GO:0017053)
0.0 0.2 GO:0030126 COPI vesicle coat(GO:0030126)
0.0 0.1 GO:0000138 Golgi trans cisterna(GO:0000138)
0.0 0.2 GO:0005751 mitochondrial respiratory chain complex IV(GO:0005751)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0038036 sphingosine-1-phosphate receptor activity(GO:0038036)
0.0 0.3 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.0 1.0 GO:0048306 calcium-dependent protein binding(GO:0048306)
0.0 0.2 GO:0052629 phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.0 0.1 GO:0071933 Arp2/3 complex binding(GO:0071933)
0.0 0.3 GO:0050811 GABA receptor binding(GO:0050811)
0.0 0.3 GO:0003810 protein-glutamine gamma-glutamyltransferase activity(GO:0003810)
0.0 0.2 GO:0070122 isopeptidase activity(GO:0070122)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME P2Y RECEPTORS Genes involved in P2Y receptors
0.0 0.2 REACTOME CALNEXIN CALRETICULIN CYCLE Genes involved in Calnexin/calreticulin cycle
0.0 0.4 REACTOME G0 AND EARLY G1 Genes involved in G0 and Early G1
0.0 0.3 REACTOME A TETRASACCHARIDE LINKER SEQUENCE IS REQUIRED FOR GAG SYNTHESIS Genes involved in A tetrasaccharide linker sequence is required for GAG synthesis
0.0 0.3 REACTOME PYRIMIDINE METABOLISM Genes involved in Pyrimidine metabolism
0.0 0.1 REACTOME INHIBITION OF REPLICATION INITIATION OF DAMAGED DNA BY RB1 E2F1 Genes involved in Inhibition of replication initiation of damaged DNA by RB1/E2F1