PRJNA375882: Comprehensive Mouse Transcriptomic BodyMap
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Motif name | Z-value | Associated genes | Profile | Logo |
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Hnf4a | 8.01 |
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Rfx3_Rfx1_Rfx4 | 7.81 |
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Snai1_Zeb1_Snai2 | 6.75 |
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Mef2d_Mef2a | 6.16 |
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Hnf1b | 5.98 |
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Elf1_Elf2_Etv2_Elf4 | 5.52 |
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Rest | 5.52 |
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Wrnip1_Mta3_Rcor1 | 5.38 |
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Hnf1a | 5.10 |
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Rfx2_Rfx7 | 4.84 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.