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PRJNA375882: Comprehensive Mouse Transcriptomic BodyMap

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Results for ACUGGCC

Z-value: 0.24

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miRNA associated with seed ACUGGCC

NamemiRBASE accession
mmu-miR-193a-3p
MIMAT0000223
mmu-miR-193b-3p
MIMAT0004859

Activity profile of ACUGGCC motif

Sorted Z-values of ACUGGCC motif

Network of associatons between targets according to the STRING database.

First level regulatory network of ACUGGCC

PNG image of the network

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Top targets:

Promoter Score Transcript Gene Gene Info
chr4_+_15881256 0.65 ENSMUST00000029876.2
Calb1
calbindin 1
chr5_+_75735576 0.57 ENSMUST00000144270.8
ENSMUST00000005815.7
Kit
KIT proto-oncogene receptor tyrosine kinase
chr1_-_153061758 0.54 ENSMUST00000185356.7
Lamc2
laminin, gamma 2
chr15_-_36794741 0.52 ENSMUST00000110361.8
ENSMUST00000022894.14
ENSMUST00000110359.2
Ywhaz
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
chr12_-_15866763 0.50 ENSMUST00000020922.8
ENSMUST00000221215.2
ENSMUST00000221518.2
Trib2
tribbles pseudokinase 2
chr12_-_79136397 0.47 ENSMUST00000217998.2
ENSMUST00000072154.9
Pigh
phosphatidylinositol glycan anchor biosynthesis, class H
chr12_-_90705212 0.42 ENSMUST00000082432.6
Dio2
deiodinase, iodothyronine, type II
chr5_-_33011530 0.42 ENSMUST00000130134.3
ENSMUST00000120129.9
Prr14l
proline rich 14-like
chr11_+_98337655 0.41 ENSMUST00000019456.5
Grb7
growth factor receptor bound protein 7
chr11_-_98436626 0.41 ENSMUST00000103141.4
Ikzf3
IKAROS family zinc finger 3
chr10_+_92996686 0.38 ENSMUST00000069965.9
Cdk17
cyclin-dependent kinase 17
chr7_-_115837034 0.33 ENSMUST00000182834.8
Plekha7
pleckstrin homology domain containing, family A member 7
chr2_+_24257576 0.31 ENSMUST00000140547.2
ENSMUST00000102942.8
Psd4
pleckstrin and Sec7 domain containing 4
chr5_-_139311371 0.31 ENSMUST00000110865.2
Adap1
ArfGAP with dual PH domains 1
chr2_-_140513382 0.27 ENSMUST00000110057.3
Flrt3
fibronectin leucine rich transmembrane protein 3
chr2_-_153083322 0.27 ENSMUST00000056924.14
Plagl2
pleiomorphic adenoma gene-like 2
chr2_-_103627937 0.26 ENSMUST00000028607.13
Caprin1
cell cycle associated protein 1
chr11_-_49603501 0.26 ENSMUST00000020624.7
ENSMUST00000145353.8
Cnot6
CCR4-NOT transcription complex, subunit 6
chr16_+_20354225 0.26 ENSMUST00000090023.13
ENSMUST00000007216.9
ENSMUST00000232001.2
Ap2m1
adaptor-related protein complex 2, mu 1 subunit
chr14_+_48683797 0.25 ENSMUST00000111735.10
Tmem260
transmembrane protein 260
chr3_-_26187883 0.25 ENSMUST00000108308.10
ENSMUST00000075054.10
Nlgn1
neuroligin 1
chr10_-_128237087 0.25 ENSMUST00000042666.13
Slc39a5
solute carrier family 39 (metal ion transporter), member 5
chr11_-_51541610 0.24 ENSMUST00000142721.2
ENSMUST00000156835.8
ENSMUST00000001080.16
N4bp3
NEDD4 binding protein 3
chr6_+_7844759 0.23 ENSMUST00000040159.6
C1galt1
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
chr1_-_72914036 0.23 ENSMUST00000027377.9
Igfbp5
insulin-like growth factor binding protein 5
chr3_-_84386724 0.23 ENSMUST00000091002.8
Fhdc1
FH2 domain containing 1
chr2_+_121786444 0.23 ENSMUST00000036647.13
Ctdspl2
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
chr9_-_32452885 0.20 ENSMUST00000016231.14
Fli1
Friend leukemia integration 1
chr18_+_36661198 0.19 ENSMUST00000237174.2
ENSMUST00000236124.2
ENSMUST00000236779.2
ENSMUST00000235181.2
ENSMUST00000074298.13
ENSMUST00000115694.3
ENSMUST00000236126.2
Slc4a9
solute carrier family 4, sodium bicarbonate cotransporter, member 9
chr10_-_108846816 0.19 ENSMUST00000105276.8
ENSMUST00000064054.14
Syt1
synaptotagmin I
chrX_+_9751861 0.19 ENSMUST00000067529.9
ENSMUST00000086165.4
Sytl5
synaptotagmin-like 5
chr5_+_44025876 0.17 ENSMUST00000030964.6
Cd38
CD38 antigen
chr1_+_65225834 0.17 ENSMUST00000081154.14
Pikfyve
phosphoinositide kinase, FYVE type zinc finger containing
chr4_-_118148537 0.16 ENSMUST00000049074.13
Ptprf
protein tyrosine phosphatase, receptor type, F
chr12_+_38830081 0.16 ENSMUST00000095767.11
Etv1
ets variant 1
chr9_+_108673171 0.15 ENSMUST00000195514.6
ENSMUST00000085018.6
ENSMUST00000192028.6
Ip6k2
inositol hexaphosphate kinase 2
chr3_-_95135946 0.15 ENSMUST00000065482.6
Mllt11
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11
chr3_+_151916059 0.15 ENSMUST00000166984.8
Fubp1
far upstream element (FUSE) binding protein 1
chr18_+_69478790 0.15 ENSMUST00000202116.4
ENSMUST00000114982.8
ENSMUST00000078486.13
ENSMUST00000202772.4
ENSMUST00000201288.4
Tcf4
transcription factor 4
chr9_+_35332837 0.14 ENSMUST00000119129.10
Cdon
cell adhesion molecule-related/down-regulated by oncogenes
chr9_+_113760002 0.13 ENSMUST00000084885.12
ENSMUST00000009885.14
Ubp1
upstream binding protein 1
chr10_+_69369590 0.13 ENSMUST00000182884.8
Ank3
ankyrin 3, epithelial
chr9_+_32607301 0.12 ENSMUST00000034534.13
ENSMUST00000050797.14
ENSMUST00000184887.2
Ets1
E26 avian leukemia oncogene 1, 5' domain
chr15_-_79816785 0.12 ENSMUST00000089293.11
ENSMUST00000109616.9
Cbx7
chromobox 7
chr10_+_127928622 0.12 ENSMUST00000219072.2
ENSMUST00000045621.9
ENSMUST00000170054.9
Baz2a
bromodomain adjacent to zinc finger domain, 2A
chr10_-_94780695 0.10 ENSMUST00000099337.5
Plxnc1
plexin C1
chr18_+_78392969 0.09 ENSMUST00000164064.2
Gm6133
predicted gene 6133
chr2_+_173918715 0.09 ENSMUST00000087908.10
ENSMUST00000044638.13
ENSMUST00000156054.2
Stx16
syntaxin 16
chr6_-_145195903 0.09 ENSMUST00000111710.8
ENSMUST00000155145.2
ENSMUST00000032399.12
ENSMUST00000203147.3
Kras
Kirsten rat sarcoma viral oncogene homolog
chr11_+_107438751 0.09 ENSMUST00000100305.8
ENSMUST00000075012.8
ENSMUST00000106746.8
Helz
helicase with zinc finger domain
chr3_-_153430741 0.09 ENSMUST00000064460.7
ENSMUST00000200397.5
St6galnac3
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
chr11_+_105927698 0.08 ENSMUST00000058438.9
Dcaf7
DDB1 and CUL4 associated factor 7
chr19_+_53588808 0.08 ENSMUST00000025930.10
Smc3
structural maintenance of chromosomes 3
chr12_+_100165694 0.08 ENSMUST00000110082.11
Calm1
calmodulin 1
chr10_-_62628008 0.07 ENSMUST00000217768.2
ENSMUST00000020268.7
ENSMUST00000218946.2
ENSMUST00000219527.2
Ccar1
cell division cycle and apoptosis regulator 1
chr12_+_98594388 0.07 ENSMUST00000048402.12
ENSMUST00000101144.10
ENSMUST00000101146.4
Spata7
spermatogenesis associated 7
chr1_-_152642032 0.06 ENSMUST00000111859.8
Rgl1
ral guanine nucleotide dissociation stimulator,-like 1
chr19_+_45352173 0.06 ENSMUST00000223764.2
ENSMUST00000065601.13
ENSMUST00000224102.2
ENSMUST00000111936.4
Btrc
beta-transducin repeat containing protein
chr8_-_65302657 0.06 ENSMUST00000034017.9
Klhl2
kelch-like 2, Mayven
chr3_+_90161470 0.06 ENSMUST00000029545.15
Crtc2
CREB regulated transcription coactivator 2
chr12_-_86931529 0.05 ENSMUST00000038422.8
Irf2bpl
interferon regulatory factor 2 binding protein-like
chr11_+_45946800 0.05 ENSMUST00000011400.8
Adam19
a disintegrin and metallopeptidase domain 19 (meltrin beta)
chr17_+_26934617 0.05 ENSMUST00000062519.14
ENSMUST00000144221.2
ENSMUST00000142539.8
ENSMUST00000151681.2
Crebrf
CREB3 regulatory factor
chr11_+_80274105 0.04 ENSMUST00000165565.8
ENSMUST00000188489.7
ENSMUST00000017567.14
ENSMUST00000108216.8
ENSMUST00000053740.15
Zfp207
zinc finger protein 207
chr19_-_41790458 0.04 ENSMUST00000026150.15
ENSMUST00000163265.9
ENSMUST00000177495.2
Arhgap19
Rho GTPase activating protein 19
chr6_-_39183712 0.04 ENSMUST00000002305.9
Kdm7a
lysine (K)-specific demethylase 7A
chr4_+_17853452 0.04 ENSMUST00000029881.10
Mmp16
matrix metallopeptidase 16
chr2_+_148237258 0.04 ENSMUST00000109962.4
Sstr4
somatostatin receptor 4
chr7_+_131568167 0.04 ENSMUST00000045840.5
Gpr26
G protein-coupled receptor 26
chr2_+_162773440 0.04 ENSMUST00000130411.7
ENSMUST00000126163.3
Srsf6
serine and arginine-rich splicing factor 6
chrX_-_107877909 0.04 ENSMUST00000101283.4
ENSMUST00000150434.8
Brwd3
bromodomain and WD repeat domain containing 3
chr2_-_60793536 0.04 ENSMUST00000028347.13
Rbms1
RNA binding motif, single stranded interacting protein 1
chr9_+_106048116 0.03 ENSMUST00000020490.13
Wdr82
WD repeat domain containing 82
chr11_+_72580823 0.03 ENSMUST00000155998.2
Ankfy1
ankyrin repeat and FYVE domain containing 1
chr3_+_38941089 0.03 ENSMUST00000061260.8
Fat4
FAT atypical cadherin 4
chr3_-_94490023 0.03 ENSMUST00000029783.16
Snx27
sorting nexin family member 27
chr10_-_128727542 0.02 ENSMUST00000026408.7
Gdf11
growth differentiation factor 11
chr10_-_39009844 0.02 ENSMUST00000134279.8
ENSMUST00000139743.8
ENSMUST00000149949.8
ENSMUST00000124941.8
ENSMUST00000125042.8
ENSMUST00000063204.9
Fam229b
family with sequence similarity 229, member B
chr4_+_155819257 0.02 ENSMUST00000147721.8
ENSMUST00000127188.3
Tmem240
transmembrane protein 240
chr1_+_43137852 0.01 ENSMUST00000010434.8
AI597479
expressed sequence AI597479
chr9_+_123195986 0.01 ENSMUST00000038863.9
ENSMUST00000216843.2
Lars2
leucyl-tRNA synthetase, mitochondrial
chr8_-_87472562 0.01 ENSMUST00000045296.6
Siah1a
siah E3 ubiquitin protein ligase 1A
chr6_-_143892814 0.00 ENSMUST00000124233.7
ENSMUST00000144289.4
ENSMUST00000111748.8
Sox5
SRY (sex determining region Y)-box 5
chr12_-_12991828 0.00 ENSMUST00000043396.15
Mycn
v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived
chr13_-_93636224 0.00 ENSMUST00000220513.2
ENSMUST00000065537.9
Jmy
junction-mediating and regulatory protein

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0042091 interleukin-10 biosynthetic process(GO:0042091) regulation of interleukin-10 biosynthetic process(GO:0045074)
0.2 0.7 GO:0035502 metanephric part of ureteric bud development(GO:0035502)
0.1 0.6 GO:1904349 positive regulation of small intestine smooth muscle contraction(GO:1904349)
0.1 0.4 GO:0070460 thyroid-stimulating hormone secretion(GO:0070460)
0.1 0.3 GO:0034378 chylomicron assembly(GO:0034378)
0.1 0.5 GO:0090168 Golgi reassembly(GO:0090168)
0.1 0.3 GO:0097115 cytoskeletal matrix organization at active zone(GO:0048789) neurexin clustering involved in presynaptic membrane assembly(GO:0097115) retrograde trans-synaptic signaling by trans-synaptic protein complex(GO:0098942)
0.1 0.2 GO:0014734 skeletal muscle hypertrophy(GO:0014734)
0.1 0.3 GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay(GO:0070966)
0.0 0.2 GO:0034224 cellular response to zinc ion starvation(GO:0034224)
0.0 0.3 GO:0045218 zonula adherens maintenance(GO:0045218)
0.0 0.3 GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane(GO:0016185)
0.0 0.2 GO:0016266 O-glycan processing(GO:0016266)
0.0 0.2 GO:0051387 negative regulation of neurotrophin TRK receptor signaling pathway(GO:0051387)
0.0 0.3 GO:0003344 pericardium morphogenesis(GO:0003344)
0.0 0.2 GO:0005513 detection of calcium ion(GO:0005513)
0.0 0.4 GO:0034063 stress granule assembly(GO:0034063)
0.0 0.1 GO:0035022 positive regulation of Rac protein signal transduction(GO:0035022)
0.0 0.1 GO:0014816 skeletal muscle satellite cell differentiation(GO:0014816)
0.0 0.3 GO:0070831 basement membrane assembly(GO:0070831)
0.0 0.1 GO:1904996 PML body organization(GO:0030578) positive regulation of leukocyte adhesion to vascular endothelial cell(GO:1904996)
0.0 0.0 GO:0035574 histone H4-K20 demethylation(GO:0035574)
0.0 0.2 GO:0051901 positive regulation of mitochondrial depolarization(GO:0051901)
0.0 0.1 GO:0016479 negative regulation of transcription from RNA polymerase I promoter(GO:0016479)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0005607 laminin-2 complex(GO:0005607)
0.0 0.5 GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex(GO:0000506)
0.0 0.2 GO:0042567 insulin-like growth factor ternary complex(GO:0042567)
0.0 0.3 GO:0005915 zonula adherens(GO:0005915)
0.0 0.1 GO:0033553 rDNA heterochromatin(GO:0033553)
0.0 0.1 GO:0034991 nuclear meiotic cohesin complex(GO:0034991)
0.0 0.3 GO:0030122 AP-2 adaptor complex(GO:0030122)
0.0 0.3 GO:0017146 NMDA selective glutamate receptor complex(GO:0017146)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0004800 thyroxine 5'-deiodinase activity(GO:0004800)
0.1 0.7 GO:0005499 vitamin D binding(GO:0005499)
0.1 0.6 GO:0004716 receptor signaling protein tyrosine kinase activity(GO:0004716)
0.1 0.2 GO:0030348 syntaxin-3 binding(GO:0030348)
0.0 0.2 GO:0003953 NAD+ nucleosidase activity(GO:0003953)
0.0 0.2 GO:0035373 chondroitin sulfate proteoglycan binding(GO:0035373)
0.0 0.5 GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity(GO:0017176)
0.0 0.1 GO:0019002 GMP binding(GO:0019002)
0.0 0.2 GO:0052723 inositol hexakisphosphate kinase activity(GO:0000828) inositol hexakisphosphate 5-kinase activity(GO:0000832) inositol hexakisphosphate 1-kinase activity(GO:0052723) inositol hexakisphosphate 3-kinase activity(GO:0052724)
0.0 0.2 GO:0031995 insulin-like growth factor II binding(GO:0031995)
0.0 0.5 GO:0055106 ubiquitin-protein transferase regulator activity(GO:0055106)
0.0 0.3 GO:0070097 delta-catenin binding(GO:0070097)
0.0 0.2 GO:0048531 beta-1,3-galactosyltransferase activity(GO:0048531)
0.0 0.1 GO:0036033 mediator complex binding(GO:0036033)
0.0 0.1 GO:0031800 type 3 metabotropic glutamate receptor binding(GO:0031800)
0.0 0.2 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.3 GO:0045499 chemorepellent activity(GO:0045499)
0.0 0.3 GO:0042043 neurexin family protein binding(GO:0042043)
0.0 0.3 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.0 0.0 GO:0035575 histone demethylase activity (H4-K20 specific)(GO:0035575)
0.0 0.1 GO:0008321 Ral guanyl-nucleotide exchange factor activity(GO:0008321)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 PID INTEGRIN4 PATHWAY Alpha6 beta4 integrin-ligand interactions
0.0 0.7 PID P38 MK2 PATHWAY p38 signaling mediated by MAPKAP kinases

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 REACTOME DESTABILIZATION OF MRNA BY KSRP Genes involved in Destabilization of mRNA by KSRP
0.0 0.4 REACTOME AMINE DERIVED HORMONES Genes involved in Amine-derived hormones
0.0 0.5 REACTOME TIE2 SIGNALING Genes involved in Tie2 Signaling
0.0 0.5 REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI Genes involved in Synthesis of glycosylphosphatidylinositol (GPI)
0.0 0.5 REACTOME REGULATION OF KIT SIGNALING Genes involved in Regulation of KIT signaling
0.0 0.2 REACTOME ACETYLCHOLINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Acetylcholine Neurotransmitter Release Cycle
0.0 0.3 REACTOME RETROGRADE NEUROTROPHIN SIGNALLING Genes involved in Retrograde neurotrophin signalling
0.0 0.2 REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs)
0.0 0.2 REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE Genes involved in Synthesis of PIPs at the late endosome membrane