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PRJNA375882: Comprehensive Mouse Transcriptomic BodyMap

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Results for CCAGCAU

Z-value: 0.20

Motif logo

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miRNA associated with seed CCAGCAU

NamemiRBASE accession
mmu-miR-338-3p
MIMAT0000582

Activity profile of CCAGCAU motif

Sorted Z-values of CCAGCAU motif

Network of associatons between targets according to the STRING database.

First level regulatory network of CCAGCAU

PNG image of the network

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Top targets:

Promoter Score Transcript Gene Gene Info
chr15_-_78088423 0.69 ENSMUST00000005860.16
Pvalb
parvalbumin
chr18_+_61058684 0.67 ENSMUST00000102888.10
ENSMUST00000025519.11
Camk2a
calcium/calmodulin-dependent protein kinase II alpha
chr2_+_121120070 0.52 ENSMUST00000094639.10
Map1a
microtubule-associated protein 1 A
chr8_-_89770790 0.43 ENSMUST00000034090.8
Sall1
spalt like transcription factor 1
chr4_-_151946219 0.42 ENSMUST00000097774.9
Camta1
calmodulin binding transcription activator 1
chr13_-_105191403 0.36 ENSMUST00000063551.7
Rgs7bp
regulator of G-protein signalling 7 binding protein
chr12_-_46865709 0.33 ENSMUST00000021438.8
Nova1
NOVA alternative splicing regulator 1
chr4_-_56990306 0.32 ENSMUST00000053681.6
Frrs1l
ferric-chelate reductase 1 like
chr11_-_95966477 0.32 ENSMUST00000090541.12
Atp5g1
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)
chr13_+_45660905 0.30 ENSMUST00000000260.13
Gmpr
guanosine monophosphate reductase
chr16_-_67417768 0.29 ENSMUST00000114292.8
ENSMUST00000120898.8
Cadm2
cell adhesion molecule 2
chr6_-_113172340 0.29 ENSMUST00000162280.2
Lhfpl4
lipoma HMGIC fusion partner-like protein 4
chr10_+_53213763 0.27 ENSMUST00000219491.2
ENSMUST00000163319.9
ENSMUST00000220197.2
ENSMUST00000046221.8
ENSMUST00000218468.2
ENSMUST00000219921.2
Pln
phospholamban
chrX_+_72800675 0.27 ENSMUST00000002079.7
Plxnb3
plexin B3
chr19_-_58849407 0.26 ENSMUST00000066285.6
Hspa12a
heat shock protein 12A
chr6_+_86826470 0.22 ENSMUST00000089519.13
ENSMUST00000204414.3
Aak1
AP2 associated kinase 1
chr12_-_87312994 0.22 ENSMUST00000072744.15
Vipas39
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
chr8_-_41586713 0.22 ENSMUST00000155055.2
ENSMUST00000059115.13
ENSMUST00000145860.2
Mtus1
mitochondrial tumor suppressor 1
chr11_+_94827050 0.22 ENSMUST00000001547.8
Col1a1
collagen, type I, alpha 1
chr4_-_140393185 0.21 ENSMUST00000069623.12
Arhgef10l
Rho guanine nucleotide exchange factor (GEF) 10-like
chr13_+_83652352 0.21 ENSMUST00000198916.5
ENSMUST00000200123.5
ENSMUST00000005722.14
ENSMUST00000163888.8
Mef2c
myocyte enhancer factor 2C
chr3_-_158267771 0.20 ENSMUST00000199890.5
ENSMUST00000238317.3
ENSMUST00000200137.5
ENSMUST00000106044.6
Lrrc7
leucine rich repeat containing 7
chr9_+_32027335 0.19 ENSMUST00000174641.8
Arhgap32
Rho GTPase activating protein 32
chr7_-_90106375 0.18 ENSMUST00000032844.7
Tmem126a
transmembrane protein 126A
chr9_-_30833748 0.18 ENSMUST00000065112.7
Adamts15
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15
chr5_-_121147593 0.16 ENSMUST00000079204.9
Rph3a
rabphilin 3A
chr9_-_119852624 0.15 ENSMUST00000111635.4
Xirp1
xin actin-binding repeat containing 1
chr5_+_118307754 0.13 ENSMUST00000054836.7
Hrk
harakiri, BCL2 interacting protein (contains only BH3 domain)
chr19_-_34724689 0.13 ENSMUST00000009522.4
Slc16a12
solute carrier family 16 (monocarboxylic acid transporters), member 12
chr8_+_77626400 0.12 ENSMUST00000109913.9
Nr3c2
nuclear receptor subfamily 3, group C, member 2
chr3_-_90416757 0.12 ENSMUST00000107343.8
ENSMUST00000001043.14
ENSMUST00000107344.8
ENSMUST00000076639.11
ENSMUST00000107346.8
ENSMUST00000146740.8
ENSMUST00000107342.2
ENSMUST00000049937.13
Chtop
chromatin target of PRMT1
chr15_+_4404965 0.12 ENSMUST00000061925.5
Plcxd3
phosphatidylinositol-specific phospholipase C, X domain containing 3
chr10_-_62067026 0.11 ENSMUST00000047883.11
Tspan15
tetraspanin 15
chr16_+_34842764 0.11 ENSMUST00000061156.10
Hacd2
3-hydroxyacyl-CoA dehydratase 2
chrX_-_7440480 0.11 ENSMUST00000115742.9
ENSMUST00000150787.8
Ppp1r3f
protein phosphatase 1, regulatory subunit 3F
chr2_-_162502994 0.11 ENSMUST00000109442.8
ENSMUST00000109445.9
ENSMUST00000109443.8
ENSMUST00000109441.2
Ptprt
protein tyrosine phosphatase, receptor type, T
chr2_-_52566583 0.10 ENSMUST00000178799.8
Cacnb4
calcium channel, voltage-dependent, beta 4 subunit
chr7_+_121666388 0.10 ENSMUST00000033158.6
Ubfd1
ubiquitin family domain containing 1
chr12_+_111132779 0.10 ENSMUST00000117269.8
Traf3
TNF receptor-associated factor 3
chr10_+_18283405 0.09 ENSMUST00000037341.14
Nhsl1
NHS-like 1
chr11_+_105480796 0.09 ENSMUST00000168598.8
ENSMUST00000100330.10
Tanc2
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
chr7_-_144493560 0.09 ENSMUST00000093962.5
Ccnd1
cyclin D1
chr4_-_149184259 0.08 ENSMUST00000103217.11
Pex14
peroxisomal biogenesis factor 14
chr11_+_5470652 0.08 ENSMUST00000063084.16
Xbp1
X-box binding protein 1
chr11_-_118246332 0.08 ENSMUST00000017610.10
Timp2
tissue inhibitor of metalloproteinase 2
chr14_-_78774201 0.08 ENSMUST00000123853.9
Akap11
A kinase (PRKA) anchor protein 11
chr1_+_120530134 0.08 ENSMUST00000079721.9
En1
engrailed 1
chr5_-_135963408 0.07 ENSMUST00000198270.2
ENSMUST00000055808.6
Ywhag
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
chr2_+_151384403 0.07 ENSMUST00000044011.12
Fkbp1a
FK506 binding protein 1a
chr11_-_44361289 0.06 ENSMUST00000102795.4
Ublcp1
ubiquitin-like domain containing CTD phosphatase 1
chr11_-_20062876 0.06 ENSMUST00000000137.8
Actr2
ARP2 actin-related protein 2
chr7_-_115637970 0.06 ENSMUST00000166877.8
Sox6
SRY (sex determining region Y)-box 6
chr2_-_118859821 0.06 ENSMUST00000110833.2
ENSMUST00000036470.14
ENSMUST00000110834.8
Ccdc32
coiled-coil domain containing 32
chr16_-_38620688 0.05 ENSMUST00000057767.6
Upk1b
uroplakin 1B
chr6_+_8948608 0.05 ENSMUST00000160300.2
Nxph1
neurexophilin 1
chr2_-_52314837 0.05 ENSMUST00000036541.8
Arl5a
ADP-ribosylation factor-like 5A
chr18_-_16942289 0.05 ENSMUST00000025166.14
Cdh2
cadherin 2
chr8_-_116434517 0.05 ENSMUST00000109104.2
Maf
avian musculoaponeurotic fibrosarcoma oncogene homolog
chr19_+_16110176 0.04 ENSMUST00000025541.6
Gnaq
guanine nucleotide binding protein, alpha q polypeptide
chr2_+_59442378 0.04 ENSMUST00000112568.8
ENSMUST00000037526.11
Tanc1
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
chr8_+_18896267 0.04 ENSMUST00000149565.8
ENSMUST00000033847.5
Agpat5
1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
chr7_+_134272395 0.03 ENSMUST00000211593.2
ENSMUST00000084488.5
Dock1
dedicator of cytokinesis 1
chr17_-_71297885 0.03 ENSMUST00000038446.10
Myl12b
myosin, light chain 12B, regulatory
chr19_-_47452840 0.03 ENSMUST00000081619.10
Sh3pxd2a
SH3 and PX domains 2A
chr3_-_108322868 0.02 ENSMUST00000090558.10
Celsr2
cadherin, EGF LAG seven-pass G-type receptor 2
chr12_-_24147247 0.02 ENSMUST00000101538.5
9030624G23Rik
RIKEN cDNA 9030624G23 gene
chr11_+_72498029 0.01 ENSMUST00000021148.13
ENSMUST00000138247.8
Ube2g1
ubiquitin-conjugating enzyme E2G 1
chr7_-_132616977 0.01 ENSMUST00000169570.8
Ctbp2
C-terminal binding protein 2
chr8_-_114575247 0.01 ENSMUST00000093113.5
Adamts18
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
chr11_+_96820091 0.00 ENSMUST00000054311.6
ENSMUST00000107636.4
Prr15l
proline rich 15-like
chr6_-_120015608 0.00 ENSMUST00000177761.8
ENSMUST00000088644.13
ENSMUST00000060043.13
Wnk1
WNK lysine deficient protein kinase 1
chrX_+_100576340 0.00 ENSMUST00000118878.8
ENSMUST00000101341.9
ENSMUST00000149274.9
Taf1
TATA-box binding protein associated factor 1
chr1_-_75168567 0.00 ENSMUST00000040689.15
ENSMUST00000189702.7
Atg9a
autophagy related 9A

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:2000383 regulation of ectoderm development(GO:2000383) negative regulation of ectoderm development(GO:2000384)
0.1 0.3 GO:0010593 negative regulation of lamellipodium assembly(GO:0010593)
0.0 0.7 GO:0098953 receptor diffusion trapping(GO:0098953) postsynaptic neurotransmitter receptor diffusion trapping(GO:0098970) neurotransmitter receptor diffusion trapping(GO:0099628)
0.0 0.1 GO:0015881 creatine transport(GO:0015881)
0.0 0.1 GO:0031959 mineralocorticoid receptor signaling pathway(GO:0031959)
0.0 0.1 GO:0016561 protein import into peroxisome matrix, translocation(GO:0016561)
0.0 0.1 GO:0032487 regulation of Rap protein signal transduction(GO:0032487)
0.0 0.3 GO:0086023 adrenergic receptor signaling pathway involved in heart process(GO:0086023)
0.0 0.2 GO:0001957 intramembranous ossification(GO:0001957) direct ossification(GO:0036072)
0.0 0.2 GO:0017185 peptidyl-lysine hydroxylation(GO:0017185)
0.0 0.1 GO:0051365 cellular response to potassium ion starvation(GO:0051365)
0.0 0.1 GO:1903487 regulation of lactation(GO:1903487)
0.0 0.2 GO:0003172 primary heart field specification(GO:0003138) sinoatrial valve development(GO:0003172) sinoatrial valve morphogenesis(GO:0003185)
0.0 0.1 GO:0000320 re-entry into mitotic cell cycle(GO:0000320)
0.0 0.1 GO:0061743 motor learning(GO:0061743)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0099573 glutamatergic postsynaptic density(GO:0099573)
0.1 0.3 GO:1902560 GMP reductase complex(GO:1902560)
0.1 0.2 GO:0005584 collagen type I trimer(GO:0005584)
0.0 0.1 GO:1990429 Pex17p-Pex14p docking complex(GO:1990415) peroxisomal importomer complex(GO:1990429)
0.0 0.3 GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)(GO:0000276)
0.0 0.2 GO:0071439 clathrin complex(GO:0071439)
0.0 0.4 GO:0090545 NuRD complex(GO:0016581) CHD-type complex(GO:0090545)
0.0 0.3 GO:0033017 sarcoplasmic reticulum membrane(GO:0033017)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0003920 GMP reductase activity(GO:0003920) oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor(GO:0016657)
0.0 0.1 GO:0005308 creatine transmembrane transporter activity(GO:0005308)
0.0 0.7 GO:0009931 calcium-dependent protein serine/threonine kinase activity(GO:0009931)
0.0 0.1 GO:0017082 mineralocorticoid receptor activity(GO:0017082)
0.0 0.3 GO:0042030 ATPase inhibitor activity(GO:0042030)
0.0 0.1 GO:0080023 3R-hydroxyacyl-CoA dehydratase activity(GO:0080023)
0.0 0.3 GO:0051022 Rho GDP-dissociation inhibitor binding(GO:0051022)
0.0 0.1 GO:2001069 glycogen binding(GO:2001069)
0.0 0.3 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.0 0.0 GO:0031826 type 2A serotonin receptor binding(GO:0031826)
0.0 0.2 GO:0048407 platelet-derived growth factor binding(GO:0048407)
0.0 0.2 GO:0035612 AP-2 adaptor complex binding(GO:0035612)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 ST WNT CA2 CYCLIC GMP PATHWAY Wnt/Ca2+/cyclic GMP signaling.
0.0 0.0 ST PAC1 RECEPTOR PATHWAY PAC1 Receptor Pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF CAMKII Genes involved in CREB phosphorylation through the activation of CaMKII
0.0 0.3 REACTOME FORMATION OF ATP BY CHEMIOSMOTIC COUPLING Genes involved in Formation of ATP by chemiosmotic coupling
0.0 0.2 REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN Genes involved in Platelet Adhesion to exposed collagen
0.0 0.3 REACTOME PURINE SALVAGE Genes involved in Purine salvage
0.0 0.3 REACTOME OTHER SEMAPHORIN INTERACTIONS Genes involved in Other semaphorin interactions