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PRJNA375882: Comprehensive Mouse Transcriptomic BodyMap

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Results for CUACAGU

Z-value: 0.18

Motif logo

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miRNA associated with seed CUACAGU

NamemiRBASE accession
mmu-miR-139-5p
MIMAT0000656

Activity profile of CUACAGU motif

Sorted Z-values of CUACAGU motif

Network of associatons between targets according to the STRING database.

First level regulatory network of CUACAGU

PNG image of the network

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Top targets:

Promoter Score Transcript Gene Gene Info
chr2_+_117942357 0.51 ENSMUST00000039559.9
Thbs1
thrombospondin 1
chr6_-_142453531 0.43 ENSMUST00000134191.3
ENSMUST00000239397.2
ENSMUST00000239395.2
ENSMUST00000032373.12
Ldhb
lactate dehydrogenase B
chr6_+_55428963 0.40 ENSMUST00000070736.12
ENSMUST00000070756.12
ENSMUST00000166962.8
Adcyap1r1
adenylate cyclase activating polypeptide 1 receptor 1
chr12_-_41536430 0.40 ENSMUST00000043884.6
Lrrn3
leucine rich repeat protein 3, neuronal
chr8_-_58106057 0.36 ENSMUST00000034021.12
Galnt7
polypeptide N-acetylgalactosaminyltransferase 7
chr6_+_141194886 0.34 ENSMUST00000043259.10
Pde3a
phosphodiesterase 3A, cGMP inhibited
chrX_-_92875712 0.31 ENSMUST00000045748.7
Pdk3
pyruvate dehydrogenase kinase, isoenzyme 3
chr12_-_111638722 0.29 ENSMUST00000001304.9
Ckb
creatine kinase, brain
chr2_+_49509288 0.23 ENSMUST00000028102.14
Kif5c
kinesin family member 5C
chrX_-_103244784 0.22 ENSMUST00000118314.8
Nexmif
neurite extension and migration factor
chr8_-_116434517 0.21 ENSMUST00000109104.2
Maf
avian musculoaponeurotic fibrosarcoma oncogene homolog
chr19_-_17814984 0.21 ENSMUST00000025618.16
ENSMUST00000050715.10
Pcsk5
proprotein convertase subtilisin/kexin type 5
chr2_-_65955338 0.19 ENSMUST00000028378.4
Galnt3
polypeptide N-acetylgalactosaminyltransferase 3
chr2_+_65676111 0.17 ENSMUST00000122912.8
Csrnp3
cysteine-serine-rich nuclear protein 3
chr14_-_121616616 0.17 ENSMUST00000079817.8
Stk24
serine/threonine kinase 24
chr11_+_44508137 0.16 ENSMUST00000109268.2
ENSMUST00000101326.10
ENSMUST00000081265.12
Ebf1
early B cell factor 1
chr10_-_117681864 0.16 ENSMUST00000064667.9
Rap1b
RAS related protein 1b
chr14_-_103220066 0.14 ENSMUST00000184744.2
Kctd12
potassium channel tetramerisation domain containing 12
chr12_-_21467437 0.12 ENSMUST00000103002.8
ENSMUST00000155480.9
ENSMUST00000135088.9
Ywhaq
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta
chr13_+_111822712 0.12 ENSMUST00000109272.9
Mier3
MIER family member 3
chr11_-_6394385 0.10 ENSMUST00000109737.9
H2az2
H2A.Z histone variant 2
chr16_+_58228806 0.10 ENSMUST00000046663.8
Dcbld2
discoidin, CUB and LCCL domain containing 2
chrX_+_92330102 0.10 ENSMUST00000046565.13
ENSMUST00000113947.6
Arx
aristaless related homeobox
chrX_-_71699740 0.10 ENSMUST00000055966.13
Gabra3
gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
chr12_+_69418886 0.09 ENSMUST00000050063.9
Arf6
ADP-ribosylation factor 6
chr4_-_41314877 0.09 ENSMUST00000030145.9
Dcaf12
DDB1 and CUL4 associated factor 12
chr11_-_84416340 0.09 ENSMUST00000018842.14
Lhx1
LIM homeobox protein 1
chr2_-_45003270 0.08 ENSMUST00000202935.4
ENSMUST00000068415.11
ENSMUST00000127520.8
Zeb2
zinc finger E-box binding homeobox 2
chr8_-_111985824 0.08 ENSMUST00000169020.8
ENSMUST00000003404.9
Glg1
golgi apparatus protein 1
chr17_+_74796473 0.08 ENSMUST00000024873.7
Yipf4
Yip1 domain family, member 4
chr16_+_41353360 0.07 ENSMUST00000099761.10
Lsamp
limbic system-associated membrane protein
chr6_-_38853097 0.07 ENSMUST00000161779.8
Hipk2
homeodomain interacting protein kinase 2
chr6_+_14901343 0.07 ENSMUST00000115477.8
Foxp2
forkhead box P2
chr10_+_53473032 0.07 ENSMUST00000020004.8
Asf1a
anti-silencing function 1A histone chaperone
chr11_-_50216426 0.06 ENSMUST00000179865.8
ENSMUST00000020637.9
Canx
calnexin
chr4_-_154721288 0.06 ENSMUST00000030902.13
ENSMUST00000105637.8
ENSMUST00000070313.14
ENSMUST00000105636.8
ENSMUST00000105638.9
ENSMUST00000097759.9
ENSMUST00000124771.2
Prdm16
PR domain containing 16
chr9_+_120762466 0.06 ENSMUST00000007130.15
ENSMUST00000178812.9
Ctnnb1
catenin (cadherin associated protein), beta 1
chr10_+_95350975 0.06 ENSMUST00000099329.5
Ube2n
ubiquitin-conjugating enzyme E2N
chr4_+_155575792 0.06 ENSMUST00000165335.8
ENSMUST00000105616.10
ENSMUST00000030940.14
Gnb1
guanine nucleotide binding protein (G protein), beta 1
chr2_-_167503416 0.05 ENSMUST00000125544.3
ENSMUST00000006587.7
Gm20431
Tmem189
predicted gene 20431
transmembrane protein 189
chr9_-_31123083 0.05 ENSMUST00000217641.2
ENSMUST00000072634.15
ENSMUST00000079758.9
ENSMUST00000213254.2
Aplp2
amyloid beta (A4) precursor-like protein 2
chr13_-_103470937 0.05 ENSMUST00000167058.8
ENSMUST00000164111.2
Mast4
microtubule associated serine/threonine kinase family member 4
chr3_+_60408600 0.05 ENSMUST00000099087.8
Mbnl1
muscleblind like splicing factor 1
chr9_+_21527462 0.05 ENSMUST00000034707.15
ENSMUST00000098948.10
Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
chr3_+_157653051 0.04 ENSMUST00000164582.4
ENSMUST00000040787.13
Ankrd13c
ankyrin repeat domain 13c
chr11_-_65160767 0.04 ENSMUST00000102635.10
Myocd
myocardin
chr6_-_38230890 0.04 ENSMUST00000117556.8
ENSMUST00000169256.5
D630045J12Rik
RIKEN cDNA D630045J12 gene
chr3_+_52175757 0.04 ENSMUST00000053764.7
Foxo1
forkhead box O1
chr6_+_120643323 0.04 ENSMUST00000112686.8
Cecr2
CECR2, histone acetyl-lysine reader
chr17_+_78507669 0.04 ENSMUST00000112498.3
Crim1
cysteine rich transmembrane BMP regulator 1 (chordin like)
chr6_+_136495784 0.04 ENSMUST00000032335.13
ENSMUST00000185724.7
Atf7ip
activating transcription factor 7 interacting protein
chr13_-_47083194 0.03 ENSMUST00000056978.8
Kif13a
kinesin family member 13A
chr1_-_181039509 0.03 ENSMUST00000162819.9
ENSMUST00000237749.2
Wdr26
WD repeat domain 26
chr2_+_160487801 0.03 ENSMUST00000109468.3
Top1
topoisomerase (DNA) I
chr4_+_97665843 0.03 ENSMUST00000075448.13
ENSMUST00000092532.13
Nfia
nuclear factor I/A
chr11_+_60590584 0.03 ENSMUST00000108719.4
Llgl1
LLGL1 scribble cell polarity complex component
chrX_-_36253309 0.02 ENSMUST00000060474.14
ENSMUST00000053456.11
ENSMUST00000115239.10
Septin6
septin 6
chr4_+_131600918 0.02 ENSMUST00000053819.6
Srsf4
serine and arginine-rich splicing factor 4
chr5_+_115769960 0.02 ENSMUST00000031492.15
Rab35
RAB35, member RAS oncogene family
chr5_-_135963408 0.02 ENSMUST00000198270.2
ENSMUST00000055808.6
Ywhag
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
chr4_+_34550918 0.02 ENSMUST00000084299.6
Akirin2
akirin 2
chr11_+_77985486 0.01 ENSMUST00000073705.12
Fam222b
family with sequence similarity 222, member B
chr8_+_107237483 0.01 ENSMUST00000080797.8
Cdh3
cadherin 3
chr12_-_91556761 0.01 ENSMUST00000021345.14
Gtf2a1
general transcription factor II A, 1
chr2_-_167473892 0.01 ENSMUST00000060645.13
ENSMUST00000140216.2
ENSMUST00000151365.8
ENSMUST00000109207.10
Ube2v1
ubiquitin-conjugating enzyme E2 variant 1
chr13_+_81031512 0.01 ENSMUST00000099356.10
Arrdc3
arrestin domain containing 3
chr3_+_58322119 0.01 ENSMUST00000099090.7
ENSMUST00000199164.2
Tsc22d2
TSC22 domain family, member 2
chr9_-_117081518 0.00 ENSMUST00000111773.10
ENSMUST00000068962.14
ENSMUST00000044901.14
Rbms3
RNA binding motif, single stranded interacting protein
chr19_-_60779077 0.00 ENSMUST00000025955.8
Eif3a
eukaryotic translation initiation factor 3, subunit A
chr2_+_131333800 0.00 ENSMUST00000110179.9
ENSMUST00000110189.9
ENSMUST00000110182.9
ENSMUST00000110183.9
ENSMUST00000110186.9
ENSMUST00000110188.8
Smox
spermine oxidase
chr11_+_21189277 0.00 ENSMUST00000109578.8
ENSMUST00000006221.14
Vps54
VPS54 GARP complex subunit
chr13_-_64300964 0.00 ENSMUST00000059817.12
ENSMUST00000117241.2
Zfp367
zinc finger protein 367
chr2_+_60040231 0.00 ENSMUST00000102748.11
Marchf7
membrane associated ring-CH-type finger 7

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0002581 negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II(GO:0002581) regulation of cGMP-mediated signaling(GO:0010752)
0.1 0.3 GO:0010510 regulation of acetyl-CoA biosynthetic process from pyruvate(GO:0010510)
0.1 0.2 GO:0098963 dendritic transport of ribonucleoprotein complex(GO:0098961) dendritic transport of messenger ribonucleoprotein complex(GO:0098963) anterograde dendritic transport of messenger ribonucleoprotein complex(GO:0098964)
0.1 0.3 GO:0060282 positive regulation of oocyte development(GO:0060282)
0.0 0.4 GO:0019244 lactate biosynthetic process from pyruvate(GO:0019244)
0.0 0.1 GO:0021759 globus pallidus development(GO:0021759)
0.0 0.2 GO:0018242 protein O-linked glycosylation via serine(GO:0018242)
0.0 0.1 GO:2000742 cervix development(GO:0060067) anterior head development(GO:0097065) regulation of anterior head development(GO:2000742) positive regulation of anterior head development(GO:2000744)
0.0 0.0 GO:2000722 regulation of cardiac vascular smooth muscle cell differentiation(GO:2000722) positive regulation of cardiac vascular smooth muscle cell differentiation(GO:2000724)
0.0 0.2 GO:0033625 positive regulation of integrin activation(GO:0033625)
0.0 0.4 GO:0060732 positive regulation of inositol phosphate biosynthetic process(GO:0060732)
0.0 0.1 GO:1904501 regulation of chromatin-mediated maintenance of transcription(GO:1904499) positive regulation of chromatin-mediated maintenance of transcription(GO:1904501) regulation of euchromatin binding(GO:1904793)
0.0 0.2 GO:2000301 negative regulation of synaptic vesicle exocytosis(GO:2000301)
0.0 0.3 GO:0030644 cellular chloride ion homeostasis(GO:0030644)
0.0 0.2 GO:0048680 positive regulation of axon regeneration(GO:0048680)
0.0 0.1 GO:1902748 positive regulation of lens fiber cell differentiation(GO:1902748)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 GO:0005577 fibrinogen complex(GO:0005577)
0.0 0.1 GO:0031372 UBC13-MMS2 complex(GO:0031372)
0.0 0.0 GO:0090537 CERF complex(GO:0090537)
0.0 0.2 GO:1990635 proximal dendrite(GO:1990635)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0070052 collagen V binding(GO:0070052)
0.1 0.4 GO:0004999 vasoactive intestinal polypeptide receptor activity(GO:0004999)
0.1 0.3 GO:0004740 pyruvate dehydrogenase (acetyl-transferring) kinase activity(GO:0004740)
0.0 0.3 GO:0004111 creatine kinase activity(GO:0004111)
0.0 0.4 GO:0004459 L-lactate dehydrogenase activity(GO:0004459)
0.0 0.2 GO:0034190 apolipoprotein receptor binding(GO:0034190)
0.0 0.5 GO:0004653 polypeptide N-acetylgalactosaminyltransferase activity(GO:0004653)
0.0 0.2 GO:0008349 MAP kinase kinase kinase kinase activity(GO:0008349)
0.0 0.0 GO:0097100 supercoiled DNA binding(GO:0097100)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 PID SYNDECAN 4 PATHWAY Syndecan-4-mediated signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 REACTOME PYRUVATE METABOLISM Genes involved in Pyruvate metabolism
0.0 0.3 REACTOME CGMP EFFECTS Genes involved in cGMP effects