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PRJNA375882: Comprehensive Mouse Transcriptomic BodyMap

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Results for Hoxa3

Z-value: 0.48

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Transcription factors associated with Hoxa3

Gene Symbol Gene ID Gene Info
Hoxa3
ENSMUSG00000079560.14 Hoxa3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Hoxa3mm39_v1_chr6_-_52160816_521608370.085.3e-01Click!

Activity profile of Hoxa3 motif

Sorted Z-values of Hoxa3 motif

Network of associatons between targets according to the STRING database.

First level regulatory network of Hoxa3

PNG image of the network

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Top targets:

Promoter Score Transcript Gene Gene Info
chr2_+_172994841 4.27 ENSMUST00000029017.6
Pck1
phosphoenolpyruvate carboxykinase 1, cytosolic
chr14_+_79753055 3.58 ENSMUST00000110835.3
ENSMUST00000227192.2
Elf1
E74-like factor 1
chr17_-_71160477 3.52 ENSMUST00000118283.8
Tgif1
TGFB-induced factor homeobox 1
chr6_-_129449739 3.06 ENSMUST00000112076.9
ENSMUST00000184581.3
Clec7a
C-type lectin domain family 7, member a
chr6_-_136758716 3.04 ENSMUST00000078095.11
ENSMUST00000032338.10
Gucy2c
guanylate cyclase 2c
chr5_-_65855511 2.80 ENSMUST00000201948.4
Pds5a
PDS5 cohesin associated factor A
chr3_-_72875187 2.75 ENSMUST00000167334.8
Sis
sucrase isomaltase (alpha-glucosidase)
chr14_+_26722319 2.08 ENSMUST00000035433.10
Hesx1
homeobox gene expressed in ES cells
chr3_-_86455575 1.68 ENSMUST00000077524.4
Mab21l2
mab-21-like 2
chr7_-_44753168 1.63 ENSMUST00000211085.2
ENSMUST00000210642.2
ENSMUST00000003512.9
Fcgrt
Fc fragment of IgG receptor and transporter
chr19_-_7943365 1.61 ENSMUST00000182102.8
ENSMUST00000075619.5
Slc22a27
solute carrier family 22, member 27
chr1_-_171854818 1.55 ENSMUST00000138714.2
ENSMUST00000027837.13
ENSMUST00000111264.8
Vangl2
VANGL planar cell polarity 2
chr2_-_168608949 1.51 ENSMUST00000075044.10
Sall4
spalt like transcription factor 4
chr16_+_35861554 1.44 ENSMUST00000042203.10
Wdr5b
WD repeat domain 5B
chr10_-_37014859 1.42 ENSMUST00000092584.6
Marcks
myristoylated alanine rich protein kinase C substrate
chr11_-_99265721 1.29 ENSMUST00000006963.3
Krt28
keratin 28
chr5_+_115373895 1.21 ENSMUST00000081497.13
Pop5
processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
chr2_-_27365633 1.19 ENSMUST00000138693.8
ENSMUST00000113941.9
ENSMUST00000077737.13
Brd3
bromodomain containing 3
chr12_-_99529767 1.13 ENSMUST00000176928.3
ENSMUST00000223484.2
Foxn3
forkhead box N3
chrX_-_74460137 1.09 ENSMUST00000033542.11
Mtcp1
mature T cell proliferation 1
chr2_+_36120438 1.09 ENSMUST00000062069.6
Ptgs1
prostaglandin-endoperoxide synthase 1
chr9_+_40092216 0.99 ENSMUST00000218134.2
ENSMUST00000216720.2
ENSMUST00000214763.2
Olfr986
olfactory receptor 986
chr13_-_103042294 0.98 ENSMUST00000167462.8
Mast4
microtubule associated serine/threonine kinase family member 4
chr3_-_92441809 0.97 ENSMUST00000193521.2
2310046K23Rik
RIKEN cDNA 2310046K23 gene
chr12_+_59060162 0.93 ENSMUST00000021379.8
Gemin2
gem nuclear organelle associated protein 2
chr15_-_101801351 0.93 ENSMUST00000100179.2
Krt76
keratin 76
chrX_+_16485937 0.92 ENSMUST00000026013.6
Maoa
monoamine oxidase A
chrX_+_159551171 0.90 ENSMUST00000112368.3
Rs1
retinoschisis (X-linked, juvenile) 1 (human)
chr11_-_99441687 0.89 ENSMUST00000092700.5
Krtap3-3
keratin associated protein 3-3
chr14_+_65612788 0.86 ENSMUST00000224687.2
Zfp395
zinc finger protein 395
chrX_+_159551009 0.86 ENSMUST00000033650.14
Rs1
retinoschisis (X-linked, juvenile) 1 (human)
chr1_-_37955569 0.81 ENSMUST00000078307.7
Lyg2
lysozyme G-like 2
chr17_+_38104635 0.77 ENSMUST00000214770.3
Olfr123
olfactory receptor 123
chr2_-_168609110 0.73 ENSMUST00000029061.12
ENSMUST00000103074.2
Sall4
spalt like transcription factor 4
chr6_-_41752111 0.65 ENSMUST00000214976.3
Olfr459
olfactory receptor 459
chr13_-_103042554 0.64 ENSMUST00000171791.8
Mast4
microtubule associated serine/threonine kinase family member 4
chr7_-_115637970 0.63 ENSMUST00000166877.8
Sox6
SRY (sex determining region Y)-box 6
chr2_-_111843053 0.63 ENSMUST00000213559.3
Olfr1310
olfactory receptor 1310
chr15_-_34356567 0.63 ENSMUST00000179647.2
9430069I07Rik
RIKEN cDNA 9430069I07 gene
chr5_+_90708962 0.59 ENSMUST00000094615.8
ENSMUST00000200765.2
Albfm1
albumin superfamily member 1
chr5_+_138185747 0.53 ENSMUST00000110934.9
Cnpy4
canopy FGF signaling regulator 4
chr10_-_129000620 0.53 ENSMUST00000214271.2
Olfr771
olfactory receptor 771
chr2_+_88505972 0.41 ENSMUST00000216767.2
ENSMUST00000213893.2
Olfr1193
olfactory receptor 1193
chr18_-_38336893 0.39 ENSMUST00000194312.2
Pcdh1
protocadherin 1
chr14_-_36820304 0.34 ENSMUST00000022337.11
Cdhr1
cadherin-related family member 1
chr2_+_109747984 0.31 ENSMUST00000046548.14
ENSMUST00000111037.3
Lgr4
leucine-rich repeat-containing G protein-coupled receptor 4
chr17_+_38104420 0.31 ENSMUST00000216051.3
Olfr123
olfactory receptor 123
chr7_-_44752508 0.28 ENSMUST00000209830.2
Fcgrt
Fc fragment of IgG receptor and transporter
chr6_+_63232955 0.27 ENSMUST00000095852.5
Grid2
glutamate receptor, ionotropic, delta 2
chr10_+_73657753 0.24 ENSMUST00000134009.9
ENSMUST00000177420.7
ENSMUST00000125006.9
Pcdh15
protocadherin 15
chr4_-_14621669 0.23 ENSMUST00000143105.2
Slc26a7
solute carrier family 26, member 7
chr2_+_89642395 0.23 ENSMUST00000214508.2
Olfr1255
olfactory receptor 1255
chr4_-_43710231 0.22 ENSMUST00000217544.2
ENSMUST00000107862.3
Olfr71
olfactory receptor 71
chrX_+_110808231 0.19 ENSMUST00000207546.2
Gm45194
predicted gene 45194
chr2_+_110551976 0.18 ENSMUST00000090332.5
Muc15
mucin 15
chr13_-_43634695 0.17 ENSMUST00000144326.4
Ranbp9
RAN binding protein 9
chr11_-_100653754 0.17 ENSMUST00000107360.3
ENSMUST00000055083.4
Hcrt
hypocretin
chr2_-_111820618 0.17 ENSMUST00000216948.2
ENSMUST00000214935.2
ENSMUST00000217452.2
ENSMUST00000215045.2
Olfr1309
olfactory receptor 1309
chr3_-_58729732 0.14 ENSMUST00000191233.4
Mindy4b-ps
MINDY lysine 48 deubiquitinase 4B, pseudogene
chr1_-_173018204 0.12 ENSMUST00000215878.2
ENSMUST00000201132.3
Olfr1406
olfactory receptor 1406
chr5_+_108842294 0.06 ENSMUST00000013633.12
Fgfrl1
fibroblast growth factor receptor-like 1
chr2_+_22959223 0.05 ENSMUST00000114523.10
Acbd5
acyl-Coenzyme A binding domain containing 5
chr14_-_52277310 0.05 ENSMUST00000216907.2
ENSMUST00000214071.2
ENSMUST00000216188.2
Olfr221
olfactory receptor 221
chr5_-_138185686 0.04 ENSMUST00000110936.8
Taf6
TATA-box binding protein associated factor 6
chr3_+_159545309 0.04 ENSMUST00000068952.10
ENSMUST00000198878.2
Wls
wntless WNT ligand secretion mediator
chr5_-_138185438 0.04 ENSMUST00000110937.8
ENSMUST00000139276.2
ENSMUST00000048698.14
ENSMUST00000123415.8
Taf6
TATA-box binding protein associated factor 6
chr11_-_99979052 0.04 ENSMUST00000107419.2
Krt32
keratin 32
chr15_+_65682066 0.03 ENSMUST00000211878.2
Efr3a
EFR3 homolog A

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 4.3 GO:0061402 glycerol biosynthetic process(GO:0006114) positive regulation of transcription from RNA polymerase II promoter in response to acidic pH(GO:0061402)
0.5 1.5 GO:0060448 dichotomous subdivision of terminal units involved in lung branching(GO:0060448)
0.4 1.8 GO:0036367 adaptation of rhodopsin mediated signaling(GO:0016062) light adaption(GO:0036367)
0.2 2.1 GO:0030916 otic vesicle formation(GO:0030916)
0.2 1.1 GO:0019371 cyclooxygenase pathway(GO:0019371) maintenance of blood-brain barrier(GO:0035633)
0.2 3.5 GO:0048387 negative regulation of retinoic acid receptor signaling pathway(GO:0048387)
0.1 1.2 GO:0009249 protein lipoylation(GO:0009249)
0.1 0.9 GO:0042420 dopamine catabolic process(GO:0042420)
0.1 1.6 GO:0015747 urate transport(GO:0015747)
0.1 0.3 GO:0061290 cell-cell signaling involved in kidney development(GO:0060995) Wnt signaling pathway involved in kidney development(GO:0061289) canonical Wnt signaling pathway involved in metanephric kidney development(GO:0061290) cell-cell signaling involved in metanephros development(GO:0072204)
0.1 0.8 GO:0000270 peptidoglycan metabolic process(GO:0000270) peptidoglycan catabolic process(GO:0009253)
0.1 3.6 GO:0050860 negative regulation of T cell receptor signaling pathway(GO:0050860)
0.1 2.2 GO:0001833 inner cell mass cell proliferation(GO:0001833)
0.1 2.8 GO:0007064 mitotic sister chromatid cohesion(GO:0007064)
0.1 0.6 GO:2000741 positive regulation of mesenchymal stem cell differentiation(GO:2000741)
0.1 3.0 GO:0006182 cGMP biosynthetic process(GO:0006182)
0.0 1.7 GO:0010172 embryonic body morphogenesis(GO:0010172)
0.0 1.4 GO:0051764 actin crosslink formation(GO:0051764)
0.0 1.1 GO:0097094 craniofacial suture morphogenesis(GO:0097094)
0.0 0.9 GO:0048733 sebaceous gland development(GO:0048733)
0.0 0.9 GO:0000387 spliceosomal snRNP assembly(GO:0000387)
0.0 0.2 GO:0051970 negative regulation of transmission of nerve impulse(GO:0051970)
0.0 0.3 GO:1900454 positive regulation of long term synaptic depression(GO:1900454)
0.0 0.0 GO:0061357 positive regulation of Wnt protein secretion(GO:0061357)
0.0 0.4 GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0016339)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.5 GO:0060187 cell pole(GO:0060187)
0.2 1.4 GO:0042585 germinal vesicle(GO:0042585)
0.2 1.2 GO:0000172 ribonuclease MRP complex(GO:0000172)
0.1 3.0 GO:0008074 guanylate cyclase complex, soluble(GO:0008074)
0.1 0.9 GO:0097504 Gemini of coiled bodies(GO:0097504)
0.0 0.9 GO:0045095 keratin filament(GO:0045095)
0.0 0.3 GO:0042622 photoreceptor outer segment membrane(GO:0042622)
0.0 1.3 GO:0005882 intermediate filament(GO:0005882)
0.0 2.2 GO:0000792 heterochromatin(GO:0000792)
0.0 2.7 GO:0005903 brush border(GO:0005903)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.4 4.3 GO:0004611 phosphoenolpyruvate carboxykinase activity(GO:0004611) phosphoenolpyruvate carboxykinase (GTP) activity(GO:0004613)
0.7 2.7 GO:0004574 oligo-1,6-glucosidase activity(GO:0004574)
0.4 1.2 GO:0000171 ribonuclease MRP activity(GO:0000171)
0.3 1.9 GO:0019770 IgG receptor activity(GO:0019770)
0.2 1.8 GO:0008429 phosphatidylethanolamine binding(GO:0008429)
0.2 3.0 GO:0015643 toxic substance binding(GO:0015643)
0.1 3.5 GO:0070410 co-SMAD binding(GO:0070410)
0.1 0.9 GO:0008131 primary amine oxidase activity(GO:0008131)
0.1 1.6 GO:0015143 urate transmembrane transporter activity(GO:0015143) salt transmembrane transporter activity(GO:1901702)
0.0 0.8 GO:0003796 lysozyme activity(GO:0003796)
0.0 1.2 GO:0070577 lysine-acetylated histone binding(GO:0070577)
0.0 0.1 GO:0001571 non-tyrosine kinase fibroblast growth factor receptor activity(GO:0001571)
0.0 0.3 GO:0016500 protein-hormone receptor activity(GO:0016500)
0.0 1.1 GO:0004601 peroxidase activity(GO:0004601)
0.0 1.4 GO:0005080 protein kinase C binding(GO:0005080)
0.0 2.7 GO:0001078 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 4.3 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks
0.1 3.6 PID IL2 STAT5 PATHWAY IL2 signaling events mediated by STAT5
0.0 3.7 PID AR PATHWAY Coregulation of Androgen receptor activity
0.0 2.2 PID BETA CATENIN NUC PATHWAY Regulation of nuclear beta catenin signaling and target gene transcription
0.0 3.1 NABA ECM AFFILIATED Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 4.3 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.1 1.4 REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE Genes involved in Regulation of Insulin Secretion by Acetylcholine
0.1 3.5 REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity
0.1 0.9 REACTOME NOREPINEPHRINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Norepinephrine Neurotransmitter Release Cycle
0.0 1.1 REACTOME PHASE1 FUNCTIONALIZATION OF COMPOUNDS Genes involved in Phase 1 - Functionalization of compounds
0.0 0.9 REACTOME METABOLISM OF NON CODING RNA Genes involved in Metabolism of non-coding RNA