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PRJNA375882: Comprehensive Mouse Transcriptomic BodyMap

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Results for Hoxb4

Z-value: 0.54

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Transcription factors associated with Hoxb4

Gene Symbol Gene ID Gene Info
Hoxb4
ENSMUSG00000038692.9 Hoxb4

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Hoxb4mm39_v1_chr11_+_96209093_962090930.028.6e-01Click!

Activity profile of Hoxb4 motif

Sorted Z-values of Hoxb4 motif

Network of associatons between targets according to the STRING database.

First level regulatory network of Hoxb4

PNG image of the network

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Top targets:

Promoter Score Transcript Gene Gene Info
chr3_-_20329823 3.70 ENSMUST00000011607.6
Cpb1
carboxypeptidase B1 (tissue)
chr7_+_130633776 3.06 ENSMUST00000084509.7
ENSMUST00000213064.3
ENSMUST00000208311.4
Dmbt1
deleted in malignant brain tumors 1
chr16_+_78727829 2.76 ENSMUST00000114216.2
ENSMUST00000069148.13
ENSMUST00000023568.14
Chodl
chondrolectin
chr8_-_62576140 2.65 ENSMUST00000034052.14
ENSMUST00000034054.9
Anxa10
annexin A10
chr2_-_84605764 2.64 ENSMUST00000111641.2
Serping1
serine (or cysteine) peptidase inhibitor, clade G, member 1
chr10_-_88440869 2.48 ENSMUST00000119185.8
ENSMUST00000238199.2
Mybpc1
myosin binding protein C, slow-type
chr2_-_84605732 2.47 ENSMUST00000023994.10
Serping1
serine (or cysteine) peptidase inhibitor, clade G, member 1
chr10_-_88440996 1.98 ENSMUST00000121629.8
Mybpc1
myosin binding protein C, slow-type
chr1_+_106866678 1.71 ENSMUST00000112724.3
Serpinb12
serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12
chr6_+_116627567 1.47 ENSMUST00000067354.10
ENSMUST00000178241.4
Depp1
DEPP1 autophagy regulator
chr4_+_58285957 1.04 ENSMUST00000081919.12
ENSMUST00000177951.8
ENSMUST00000098059.10
ENSMUST00000179951.2
ENSMUST00000102893.10
ENSMUST00000084578.12
ENSMUST00000098057.10
Musk
muscle, skeletal, receptor tyrosine kinase
chr6_+_116627635 0.91 ENSMUST00000204555.2
Depp1
DEPP1 autophagy regulator
chr3_-_144804784 0.84 ENSMUST00000040465.11
ENSMUST00000198993.2
Clca2
chloride channel accessory 2
chr18_-_56695288 0.83 ENSMUST00000170309.8
Aldh7a1
aldehyde dehydrogenase family 7, member A1
chr11_-_40646090 0.83 ENSMUST00000020576.8
Ccng1
cyclin G1
chr13_+_94219934 0.83 ENSMUST00000156071.2
Lhfpl2
lipoma HMGIC fusion partner-like 2
chr8_+_26298502 0.80 ENSMUST00000033979.6
Star
steroidogenic acute regulatory protein
chr1_-_171050077 0.79 ENSMUST00000005817.9
Tomm40l
translocase of outer mitochondrial membrane 40-like
chr18_-_56695333 0.79 ENSMUST00000066208.13
ENSMUST00000172734.8
Aldh7a1
aldehyde dehydrogenase family 7, member A1
chr2_-_38604503 0.77 ENSMUST00000028084.5
Nr5a1
nuclear receptor subfamily 5, group A, member 1
chr18_-_56695259 0.75 ENSMUST00000171844.3
Aldh7a1
aldehyde dehydrogenase family 7, member A1
chr1_-_171050004 0.69 ENSMUST00000147246.2
ENSMUST00000111326.8
ENSMUST00000138184.8
Tomm40l
translocase of outer mitochondrial membrane 40-like
chr1_-_37996838 0.66 ENSMUST00000027254.10
ENSMUST00000114894.2
Lyg1
lysozyme G-like 1
chr13_-_21823691 0.65 ENSMUST00000043081.3
Olfr11
olfactory receptor 11
chr16_-_19226828 0.65 ENSMUST00000052516.5
ENSMUST00000206410.3
Olfr165
olfactory receptor 165
chrX_-_8059597 0.65 ENSMUST00000143223.2
ENSMUST00000033509.15
Ebp
phenylalkylamine Ca2+ antagonist (emopamil) binding protein
chr14_+_32972324 0.63 ENSMUST00000131086.3
Arhgap22
Rho GTPase activating protein 22
chr8_+_120955195 0.57 ENSMUST00000180448.3
Gse1
genetic suppressor element 1, coiled-coil protein
chr4_+_43493344 0.56 ENSMUST00000030181.12
ENSMUST00000107922.3
Ccdc107
coiled-coil domain containing 107
chr4_+_151081538 0.55 ENSMUST00000030803.2
Uts2
urotensin 2
chr16_-_94171340 0.50 ENSMUST00000138514.2
Pigp
phosphatidylinositol glycan anchor biosynthesis, class P
chr1_-_135934080 0.49 ENSMUST00000166193.9
Igfn1
immunoglobulin-like and fibronectin type III domain containing 1
chr10_-_59452489 0.44 ENSMUST00000020312.13
Mcu
mitochondrial calcium uniporter
chr8_-_106198112 0.43 ENSMUST00000014990.13
Tppp3
tubulin polymerization-promoting protein family member 3
chr10_-_89457115 0.42 ENSMUST00000020102.14
Slc17a8
solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8
chr7_+_144391786 0.33 ENSMUST00000155320.8
Fgf3
fibroblast growth factor 3
chr6_+_142359099 0.30 ENSMUST00000126521.9
ENSMUST00000211094.2
Spx
spexin hormone
chr11_+_46701619 0.28 ENSMUST00000068877.7
Timd4
T cell immunoglobulin and mucin domain containing 4
chr1_+_9615619 0.27 ENSMUST00000072079.9
Rrs1
ribosome biogenesis regulator 1
chr7_+_29931309 0.27 ENSMUST00000019882.16
ENSMUST00000149654.8
Polr2i
polymerase (RNA) II (DNA directed) polypeptide I
chr17_+_44263890 0.24 ENSMUST00000177857.9
ENSMUST00000044792.6
Rcan2
regulator of calcineurin 2
chr11_+_58471639 0.22 ENSMUST00000169428.5
Olfr325
olfactory receptor 325
chr7_+_107702486 0.21 ENSMUST00000104917.4
Olfr483
olfactory receptor 483
chr7_+_29931735 0.17 ENSMUST00000108193.2
ENSMUST00000108192.2
Polr2i
polymerase (RNA) II (DNA directed) polypeptide I
chr10_-_41585293 0.17 ENSMUST00000019955.16
ENSMUST00000099932.10
Ccdc162
coiled-coil domain containing 162
chr18_+_56695515 0.16 ENSMUST00000130163.8
ENSMUST00000132628.8
Phax
phosphorylated adaptor for RNA export
chr10_+_129376408 0.16 ENSMUST00000076575.4
Olfr792
olfactory receptor 792
chr2_+_102488985 0.15 ENSMUST00000080210.10
Slc1a2
solute carrier family 1 (glial high affinity glutamate transporter), member 2
chr1_+_11063678 0.14 ENSMUST00000027056.12
Prex2
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
chr2_-_118987305 0.13 ENSMUST00000135419.8
ENSMUST00000129351.2
ENSMUST00000139519.2
ENSMUST00000094695.12
Rmdn3
regulator of microtubule dynamics 3
chr9_+_40098375 0.12 ENSMUST00000062229.6
Olfr986
olfactory receptor 986
chr3_-_51184730 0.11 ENSMUST00000195432.2
ENSMUST00000091144.11
ENSMUST00000156983.3
Elf2
E74-like factor 2
chr7_-_29931612 0.11 ENSMUST00000006254.6
Tbcb
tubulin folding cofactor B
chr12_-_54842488 0.11 ENSMUST00000005798.9
Snx6
sorting nexin 6
chrX_-_142716200 0.10 ENSMUST00000112851.8
ENSMUST00000112856.3
ENSMUST00000033642.10
Dcx
doublecortin
chr3_-_97318495 0.10 ENSMUST00000060912.4
Olfr1402
olfactory receptor 1402
chr4_-_35845204 0.10 ENSMUST00000164772.8
ENSMUST00000065173.9
Lingo2
leucine rich repeat and Ig domain containing 2
chr7_-_103214484 0.08 ENSMUST00000106886.2
Olfr616
olfactory receptor 616
chr15_+_101013704 0.03 ENSMUST00000229954.2
Ankrd33
ankyrin repeat domain 33
chr7_+_16821858 0.03 ENSMUST00000152671.2
Psg16
pregnancy specific glycoprotein 16
chr14_+_58308004 0.03 ENSMUST00000165526.9
Fgf9
fibroblast growth factor 9
chrX_-_142716085 0.02 ENSMUST00000087313.10
Dcx
doublecortin
chr15_+_82230155 0.02 ENSMUST00000023086.15
Smdt1
single-pass membrane protein with aspartate rich tail 1
chr4_-_118687635 0.01 ENSMUST00000076019.4
Olfr1333
olfactory receptor 1333

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.7 5.1 GO:0001869 regulation of complement activation, lectin pathway(GO:0001868) negative regulation of complement activation, lectin pathway(GO:0001869)
0.3 4.5 GO:0071688 striated muscle myosin thick filament assembly(GO:0071688)
0.3 1.0 GO:1904395 positive regulation of skeletal muscle acetylcholine-gated channel clustering(GO:1904395)
0.2 0.6 GO:0046005 positive regulation of circadian sleep/wake cycle, REM sleep(GO:0046005)
0.2 0.8 GO:0070859 positive regulation of bile acid biosynthetic process(GO:0070859) positive regulation of bile acid metabolic process(GO:1904253)
0.1 3.1 GO:0001833 inner cell mass cell proliferation(GO:0001833)
0.1 0.8 GO:2000195 negative regulation of female gonad development(GO:2000195)
0.1 1.5 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.1 0.7 GO:0000270 peptidoglycan metabolic process(GO:0000270) peptidoglycan catabolic process(GO:0009253)
0.1 0.2 GO:0051030 snRNA transport(GO:0051030)
0.0 0.5 GO:0036444 calcium ion transmembrane import into mitochondrion(GO:0036444)
0.0 0.4 GO:0006283 transcription-coupled nucleotide-excision repair(GO:0006283)
0.0 0.3 GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000447)
0.0 0.3 GO:1904306 positive regulation of gastro-intestinal system smooth muscle contraction(GO:1904306)
0.0 0.8 GO:0007095 mitotic G2 DNA damage checkpoint(GO:0007095)
0.0 0.2 GO:0070777 D-aspartate transport(GO:0070777) D-aspartate import(GO:0070779)
0.0 0.3 GO:0048752 semicircular canal morphogenesis(GO:0048752)
0.0 0.4 GO:0015813 L-glutamate transport(GO:0015813)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 3.1 GO:0030670 phagocytic vesicle membrane(GO:0030670)
0.2 4.5 GO:0005859 muscle myosin complex(GO:0005859)
0.1 1.5 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.1 0.5 GO:1990246 uniplex complex(GO:1990246)
0.1 0.4 GO:0097441 basilar dendrite(GO:0097441)
0.0 0.8 GO:0030061 mitochondrial crista(GO:0030061)
0.0 0.4 GO:0097427 microtubule bundle(GO:0097427)
0.0 0.5 GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex(GO:0000506)
0.0 5.1 GO:0072562 blood microparticle(GO:0072562)
0.0 0.4 GO:0005665 DNA-directed RNA polymerase II, core complex(GO:0005665)
0.0 0.3 GO:0031045 dense core granule(GO:0031045)
0.0 0.1 GO:0097422 tubular endosome(GO:0097422)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 3.1 GO:0035375 zymogen binding(GO:0035375)
0.6 2.4 GO:0008802 betaine-aldehyde dehydrogenase activity(GO:0008802)
0.2 4.5 GO:0097493 structural molecule activity conferring elasticity(GO:0097493)
0.2 5.1 GO:0001848 complement binding(GO:0001848)
0.1 0.4 GO:0015292 uniporter activity(GO:0015292)
0.1 1.5 GO:0015288 porin activity(GO:0015288)
0.1 3.7 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.1 2.8 GO:0005540 hyaluronic acid binding(GO:0005540)
0.1 0.6 GO:0004769 steroid delta-isomerase activity(GO:0004769)
0.0 0.7 GO:0003796 lysozyme activity(GO:0003796)
0.0 0.5 GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity(GO:0017176)
0.0 2.7 GO:0005544 calcium-dependent phospholipid binding(GO:0005544)
0.0 0.2 GO:0008597 calcium-dependent protein serine/threonine phosphatase regulator activity(GO:0008597)
0.0 0.8 GO:0005229 intracellular calcium activated chloride channel activity(GO:0005229)
0.0 0.2 GO:0015501 glutamate:sodium symporter activity(GO:0015501)
0.0 0.8 GO:0017127 cholesterol transporter activity(GO:0017127)
0.0 0.4 GO:0005313 L-glutamate transmembrane transporter activity(GO:0005313)
0.0 0.3 GO:0008097 5S rRNA binding(GO:0008097)
0.0 0.1 GO:0034452 dynactin binding(GO:0034452)
0.0 1.0 GO:0004714 transmembrane receptor protein tyrosine kinase activity(GO:0004714)
0.0 1.7 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.0 0.4 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 6.8 NABA ECM REGULATORS Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix
0.0 3.1 NABA ECM GLYCOPROTEINS Genes encoding structural ECM glycoproteins
0.0 2.7 NABA ECM AFFILIATED Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins
0.0 0.8 PID TAP63 PATHWAY Validated transcriptional targets of TAp63 isoforms

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 5.1 REACTOME INTRINSIC PATHWAY Genes involved in Intrinsic Pathway
0.1 4.5 REACTOME STRIATED MUSCLE CONTRACTION Genes involved in Striated Muscle Contraction
0.0 0.4 REACTOME VIRAL MESSENGER RNA SYNTHESIS Genes involved in Viral Messenger RNA Synthesis
0.0 0.6 REACTOME CHOLESTEROL BIOSYNTHESIS Genes involved in Cholesterol biosynthesis
0.0 0.8 REACTOME STEROID HORMONES Genes involved in Steroid hormones
0.0 0.5 REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI Genes involved in Synthesis of glycosylphosphatidylinositol (GPI)
0.0 0.4 REACTOME FGFR1 LIGAND BINDING AND ACTIVATION Genes involved in FGFR1 ligand binding and activation