mm39_v1_chr10_+_70080913_70080970	5.13043	AAAGUGC	ENSMUST00000046807.7|Slc16a9|ENSMUSG00000037762.7|solute carrier family 16 (monocarboxylic acid transporters), member 9
mm39_v1_chr4_-_138820269_138820304	4.74995	AAAGUGC	ENSMUST00000042844.7|Nbl1|ENSMUSG00000041120.7|NBL1, DAN family BMP antagonist
mm39_v1_chr1_-_77491683_77491779	4.53894	AAAGUGC	ENSMUST00000186930.2|Epha4|ENSMUSG00000026235.15|Eph receptor A4	ENSMUST00000027451.13|Epha4|ENSMUSG00000026235.15|Eph receptor A4	ENSMUST00000188797.7|Epha4|ENSMUSG00000026235.15|Eph receptor A4
mm39_v1_chr1_-_82564501_82564570	4.46567	AAAGUGC	ENSMUST00000087050.7|Col4a4|ENSMUSG00000067158.10|collagen, type IV, alpha 4
mm39_v1_chr5_+_75312939_75312967	3.84741	AAAGUGC	ENSMUST00000202681.4|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide	ENSMUST00000000476.15|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide
mm39_v1_chr6_-_41613322_41613343	3.76757	AAAGUGC	ENSMUST00000031902.7|Trpv6|ENSMUSG00000029868.15|transient receptor potential cation channel, subfamily V, member 6
mm39_v1_chr5_+_17779273_17779291	3.76184	AAAGUGC	ENSMUST00000030568.14|Sema3c|ENSMUSG00000028780.14|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
mm39_v1_chr6_+_91955820_91955896	3.75059	AAAGUGC	ENSMUST00000089334.9|Fgd5|ENSMUSG00000034037.15|FYVE, RhoGEF and PH domain containing 5
mm39_v1_chr18_+_12466876_12467002	3.70786	AAAGUGC	ENSMUST00000092070.13|Lama3|ENSMUSG00000024421.17|laminin, alpha 3
mm39_v1_chr7_-_143294051_143294105	3.63557	AAAGUGC	ENSMUST00000119499.8|Osbpl5|ENSMUSG00000037606.19|oxysterol binding protein-like 5
mm39_v1_chr10_-_70995485_70995537	3.47513	AAAGUGC	ENSMUST00000014473.6|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1	ENSMUST00000143791.8|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1
mm39_v1_chr6_+_117988399_117988457	3.407	AAAGUGC	ENSMUST00000164960.4|Rasgef1a|ENSMUSG00000030134.12|RasGEF domain family, member 1A
mm39_v1_chr16_+_33504829_33504842	3.39813	AAAGUGC	ENSMUST00000152782.8|Heg1|ENSMUSG00000075254.13|heart development protein with EGF-like domains 1
mm39_v1_chr5_+_104607316_104607449	3.38185	AAAGUGC	ENSMUST00000086831.4|Pkd2|ENSMUSG00000034462.10|polycystin 2, transient receptor potential cation channel
mm39_v1_chr3_-_101017594_101017652	3.28357	AAAGUGC	ENSMUST00000102694.4|Ptgfrn|ENSMUSG00000027864.10|prostaglandin F2 receptor negative regulator
mm39_v1_chr5_+_74355940_74355955	3.03834	AAAGUGC	ENSMUST00000051937.9|Rasl11b|ENSMUSG00000049907.9|RAS-like, family 11, member B
mm39_v1_chrX_-_77627486_77627508	3.02209	AAAGUGC	ENSMUST00000114025.8|Prrg1|ENSMUSG00000047996.17|proline rich Gla (G-carboxyglutamic acid) 1	ENSMUST00000134602.8|Prrg1|ENSMUSG00000047996.17|proline rich Gla (G-carboxyglutamic acid) 1	ENSMUST00000114024.9|Prrg1|ENSMUSG00000047996.17|proline rich Gla (G-carboxyglutamic acid) 1
mm39_v1_chr1_-_88629843_88629943	3.00663	AAAGUGC	ENSMUST00000159814.2|Arl4c|ENSMUSG00000049866.13|ADP-ribosylation factor-like 4C
mm39_v1_chr3_+_7431717_7431730	2.92928	AAAGUGC	ENSMUST00000192468.2|Pkia|ENSMUSG00000027499.13|protein kinase inhibitor, alpha	ENSMUST00000028999.12|Pkia|ENSMUSG00000027499.13|protein kinase inhibitor, alpha
mm39_v1_chr1_-_74163575_74163626	2.89	AAAGUGC	ENSMUST00000169786.8|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000212888.2|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000191104.7|Tns1|ENSMUSG00000055322.17|tensin 1
mm39_v1_chr6_+_36364990_36365019	2.84575	AAAGUGC	ENSMUST00000172278.8|Chrm2|ENSMUSG00000045613.10|cholinergic receptor, muscarinic 2, cardiac
mm39_v1_chr16_-_21513317_21513415	2.75795	AAAGUGC	ENSMUST00000231592.2|2510009E07Rik|ENSMUSG00000043391.11|RIKEN cDNA 2510009E07 gene	ENSMUST00000053336.8|2510009E07Rik|ENSMUSG00000043391.11|RIKEN cDNA 2510009E07 gene
mm39_v1_chr8_-_69187708_69187800	2.75696	AAAGUGC	ENSMUST00000136060.8|Csgalnact1|ENSMUSG00000036356.16|chondroitin sulfate N-acetylgalactosaminyltransferase 1	ENSMUST00000130214.8|Csgalnact1|ENSMUSG00000036356.16|chondroitin sulfate N-acetylgalactosaminyltransferase 1	ENSMUST00000078350.13|Csgalnact1|ENSMUSG00000036356.16|chondroitin sulfate N-acetylgalactosaminyltransferase 1
mm39_v1_chr9_-_116004265_116004333	2.74279	AAAGUGC	ENSMUST00000061101.12|Tgfbr2|ENSMUSG00000032440.14|transforming growth factor, beta receptor II
mm39_v1_chr6_-_128120488_128120556	2.7261	AAAGUGC	ENSMUST00000145940.8|Tspan9|ENSMUSG00000030352.16|tetraspanin 9	ENSMUST00000032503.12|Tspan9|ENSMUSG00000030352.16|tetraspanin 9	ENSMUST00000154375.8|Tspan9|ENSMUSG00000030352.16|tetraspanin 9	ENSMUST00000112173.8|Tspan9|ENSMUSG00000030352.16|tetraspanin 9
mm39_v1_chr15_-_53765869_53765926	2.60299	AAAGUGC	ENSMUST00000078673.14|Samd12|ENSMUSG00000058656.14|sterile alpha motif domain containing 12
mm39_v1_chr4_+_86792633_86792676	2.55415	AAAGUGC	ENSMUST00000045224.14|Acer2|ENSMUSG00000038007.15|alkaline ceramidase 2	ENSMUST00000084433.5|Acer2|ENSMUSG00000038007.15|alkaline ceramidase 2
mm39_v1_chr9_-_96993169_96993214	2.53573	AAAGUGC	ENSMUST00000085206.11|Slc25a36|ENSMUSG00000032449.14|solute carrier family 25, member 36
mm39_v1_chr8_+_61085890_61085952	2.5076	AAAGUGC	ENSMUST00000160719.8|Mfap3l|ENSMUSG00000031647.11|microfibrillar-associated protein 3-like
mm39_v1_chr13_-_29137673_29137696	2.50139	AAAGUGC	ENSMUST00000067230.6|Sox4|ENSMUSG00000076431.5|SRY (sex determining region Y)-box 4
mm39_v1_chr9_+_57847387_57847403	2.47596	AAAGUGC	ENSMUST00000043059.9|Sema7a|ENSMUSG00000038264.9|sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A
mm39_v1_chr11_-_118246332_118246332	2.39298	AAAGUGC	ENSMUST00000017610.10|Timp2|ENSMUSG00000017466.10|tissue inhibitor of metalloproteinase 2
mm39_v1_chr3_-_59251573_59251677	2.37754	AAAGUGC	ENSMUST00000193455.6|Igsf10|ENSMUSG00000036334.13|immunoglobulin superfamily, member 10	ENSMUST00000039419.12|Igsf10|ENSMUSG00000036334.13|immunoglobulin superfamily, member 10	ENSMUST00000195983.2|Igsf10|ENSMUSG00000036334.13|immunoglobulin superfamily, member 10
mm39_v1_chr11_-_68291638_68291662	2.37131	AAAGUGC	ENSMUST00000108674.9|Ntn1|ENSMUSG00000020902.13|netrin 1
mm39_v1_chr17_+_57556449_57556548	2.36089	AAAGUGC	ENSMUST00000224947.2|Trip10|ENSMUSG00000019487.12|thyroid hormone receptor interactor 10	ENSMUST00000019631.11|Trip10|ENSMUSG00000019487.12|thyroid hormone receptor interactor 10	ENSMUST00000224885.2|Trip10|ENSMUSG00000019487.12|thyroid hormone receptor interactor 10	ENSMUST00000224152.2|Trip10|ENSMUSG00000019487.12|thyroid hormone receptor interactor 10
mm39_v1_chr7_-_118091135_118091198	2.34457	AAAGUGC	ENSMUST00000178344.3|Itpripl2|ENSMUSG00000095115.3|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm39_v1_chr13_-_98342659_98342695	2.34353	AAAGUGC	ENSMUST00000109426.3|Arhgef28|ENSMUSG00000021662.12|Rho guanine nucleotide exchange factor (GEF) 28
mm39_v1_chr1_+_12762501_12762590	2.32529	AAAGUGC	ENSMUST00000177608.8|Sulf1|ENSMUSG00000016918.16|sulfatase 1	ENSMUST00000180062.8|Sulf1|ENSMUSG00000016918.16|sulfatase 1
mm39_v1_chr12_+_70872266_70872288	2.3223	AAAGUGC	ENSMUST00000057859.9|Frmd6|ENSMUSG00000048285.10|FERM domain containing 6
mm39_v1_chr17_+_43327412_43327482	2.30192	AAAGUGC	ENSMUST00000024708.6|Tnfrsf21|ENSMUSG00000023915.6|tumor necrosis factor receptor superfamily, member 21
mm39_v1_chr3_-_153430741_153430816	2.2905	AAAGUGC	ENSMUST00000064460.7|St6galnac3|ENSMUSG00000052544.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	ENSMUST00000200397.5|St6galnac3|ENSMUSG00000052544.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
mm39_v1_chr19_+_27194757_27194825	2.27726	AAAGUGC	ENSMUST00000047645.13|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor	ENSMUST00000167487.8|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor
mm39_v1_chr3_+_96465265_96465284	2.23061	AAAGUGC	ENSMUST00000074519.13|Txnip|ENSMUSG00000038393.15|thioredoxin interacting protein	ENSMUST00000049093.8|Txnip|ENSMUSG00000038393.15|thioredoxin interacting protein
mm39_v1_chr11_+_69656725_69656752	2.19961	AAAGUGC	ENSMUST00000108640.8|Zbtb4|ENSMUSG00000018750.15|zinc finger and BTB domain containing 4	ENSMUST00000108639.8|Zbtb4|ENSMUSG00000018750.15|zinc finger and BTB domain containing 4
mm39_v1_chr19_+_8966641_8966662	2.17075	AAAGUGC	ENSMUST00000092956.4|Ahnak|ENSMUSG00000069833.14|AHNAK nucleoprotein (desmoyokin)	ENSMUST00000092955.11|Ahnak|ENSMUSG00000069833.14|AHNAK nucleoprotein (desmoyokin)
mm39_v1_chr3_-_9675130_9675146	2.16037	AAAGUGC	ENSMUST00000041124.13|Zfp704|ENSMUSG00000040209.13|zinc finger protein 704
mm39_v1_chr3_-_115508680_115508721	2.1166	AAAGUGC	ENSMUST00000055676.4|S1pr1|ENSMUSG00000045092.9|sphingosine-1-phosphate receptor 1
mm39_v1_chr16_-_84970617_84970654	2.11496	AAAGUGC	ENSMUST00000226232.2|App|ENSMUSG00000022892.12|amyloid beta (A4) precursor protein	ENSMUST00000227021.2|App|ENSMUSG00000022892.12|amyloid beta (A4) precursor protein	ENSMUST00000005406.12|App|ENSMUSG00000022892.12|amyloid beta (A4) precursor protein	ENSMUST00000227723.2|App|ENSMUSG00000022892.12|amyloid beta (A4) precursor protein
mm39_v1_chr8_+_3443018_3443073	2.05131	AAAGUGC	ENSMUST00000004684.13|Arhgef18|ENSMUSG00000004568.14|rho/rac guanine nucleotide exchange factor (GEF) 18	ENSMUST00000145394.3|Arhgef18|ENSMUSG00000004568.14|rho/rac guanine nucleotide exchange factor (GEF) 18
mm39_v1_chr1_+_82564627_82564709	2.04578	AAAGUGC	ENSMUST00000113457.9|Col4a3|ENSMUSG00000079465.9|collagen, type IV, alpha 3
mm39_v1_chr14_-_75185281_75185324	1.99411	AAAGUGC	ENSMUST00000088970.7|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1	ENSMUST00000228252.2|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1
mm39_v1_chr7_-_105282751_105282807	1.99395	AAAGUGC	ENSMUST00000057525.14|Trim3|ENSMUSG00000036989.17|tripartite motif-containing 3
mm39_v1_chr6_-_89339581_89339602	1.98827	AAAGUGC	ENSMUST00000163139.8|Plxna1|ENSMUSG00000030084.12|plexin A1
mm39_v1_chr5_+_137348638_137348775	1.98645	AAAGUGC	ENSMUST00000166239.8|Ephb4|ENSMUSG00000029710.16|Eph receptor B4	ENSMUST00000111054.2|Ephb4|ENSMUSG00000029710.16|Eph receptor B4
mm39_v1_chr15_-_102140331_102140379	1.95799	AAAGUGC	ENSMUST00000230652.2|Itgb7|ENSMUSG00000001281.11|integrin beta 7	ENSMUST00000127014.3|Itgb7|ENSMUSG00000001281.11|integrin beta 7	ENSMUST00000001327.11|Itgb7|ENSMUSG00000001281.11|integrin beta 7
mm39_v1_chr17_+_24768808_24769007	1.92962	AAAGUGC	ENSMUST00000228550.2|Pkd1|ENSMUSG00000032855.7|polycystin 1, transient receptor poteintial channel interacting	ENSMUST00000035565.5|Pkd1|ENSMUSG00000032855.7|polycystin 1, transient receptor poteintial channel interacting
mm39_v1_chr9_-_62444318_62444343	1.87288	AAAGUGC	ENSMUST00000048043.12|Coro2b|ENSMUSG00000041729.16|coronin, actin binding protein, 2B
mm39_v1_chr8_+_14961663_14961677	1.87261	AAAGUGC	ENSMUST00000084207.12|Arhgef10|ENSMUSG00000071176.11|Rho guanine nucleotide exchange factor (GEF) 10
mm39_v1_chr13_-_95754987_95755006	1.86971	AAAGUGC	ENSMUST00000059193.7|F2r|ENSMUSG00000048376.7|coagulation factor II (thrombin) receptor
mm39_v1_chr17_+_78507669_78507687	1.86788	AAAGUGC	ENSMUST00000112498.3|Crim1|ENSMUSG00000024074.9|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm39_v1_chr2_+_165834546_165834563	1.8485	AAAGUGC	ENSMUST00000109252.8|Ncoa3|ENSMUSG00000027678.18|nuclear receptor coactivator 3	ENSMUST00000088095.6|Ncoa3|ENSMUSG00000027678.18|nuclear receptor coactivator 3
mm39_v1_chr16_+_58228806_58228886	1.81052	AAAGUGC	ENSMUST00000046663.8|Dcbld2|ENSMUSG00000035107.14|discoidin, CUB and LCCL domain containing 2
mm39_v1_chr1_+_59802543_59802559	1.81028	AAAGUGC	ENSMUST00000087435.7|Bmpr2|ENSMUSG00000067336.7|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm39_v1_chr12_+_73948143_73948166	1.80766	AAAGUGC	ENSMUST00000110461.8|Hif1a|ENSMUSG00000021109.14|hypoxia inducible factor 1, alpha subunit
mm39_v1_chr19_-_47452840_47452894	1.80532	AAAGUGC	ENSMUST00000081619.10|Sh3pxd2a|ENSMUSG00000053617.13|SH3 and PX domains 2A
mm39_v1_chr10_-_8761777_8761821	1.76927	AAAGUGC	ENSMUST00000015449.6|Sash1|ENSMUSG00000015305.7|SAM and SH3 domain containing 1
mm39_v1_chr17_+_44389704_44389741	1.73016	AAAGUGC	ENSMUST00000154166.8|Enpp5|ENSMUSG00000023960.14|ectonucleotide pyrophosphatase/phosphodiesterase 5	ENSMUST00000024756.5|Enpp5|ENSMUSG00000023960.14|ectonucleotide pyrophosphatase/phosphodiesterase 5
mm39_v1_chr17_-_32074754_32074780	1.72578	AAAGUGC	ENSMUST00000024839.6|Sik1|ENSMUSG00000024042.8|salt inducible kinase 1
mm39_v1_chr8_+_107662352_107662410	1.71747	AAAGUGC	ENSMUST00000212524.2|Sntb2|ENSMUSG00000041308.7|syntrophin, basic 2	ENSMUST00000047425.5|Sntb2|ENSMUSG00000041308.7|syntrophin, basic 2
mm39_v1_chr17_+_14499768_14499775	1.71233	AAAGUGC	ENSMUST00000024660.9|Smoc2|ENSMUSG00000023886.11|SPARC related modular calcium binding 2
mm39_v1_chr10_-_42354482_42354561	1.7049	AAAGUGC	ENSMUST00000041024.15|Afg1l|ENSMUSG00000038302.15|AFG1 like ATPase
mm39_v1_chr4_-_56947411_56947448	1.70445	AAAGUGC	ENSMUST00000107609.4|Tmem245|ENSMUSG00000055296.15|transmembrane protein 245	ENSMUST00000068792.13|Tmem245|ENSMUSG00000055296.15|transmembrane protein 245
mm39_v1_chr3_-_56091096_56091122	1.69981	AAAGUGC	ENSMUST00000029374.8|Nbea|ENSMUSG00000027799.13|neurobeachin
mm39_v1_chr17_-_46342739_46342789	1.69931	AAAGUGC	ENSMUST00000024747.14|Vegfa|ENSMUSG00000023951.19|vascular endothelial growth factor A
mm39_v1_chr12_+_9624437_9624448	1.69653	AAAGUGC	ENSMUST00000057021.9|Osr1|ENSMUSG00000048387.9|odd-skipped related transcription factor 1
mm39_v1_chr18_+_3507917_3507943	1.68946	AAAGUGC	ENSMUST00000025075.3|Bambi|ENSMUSG00000024232.3|BMP and activin membrane-bound inhibitor
mm39_v1_chr5_-_62923463_62923615	1.66456	AAAGUGC	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr8_+_83589979_83590055	1.65869	AAAGUGC	ENSMUST00000078525.7|Rnf150|ENSMUSG00000047747.11|ring finger protein 150
mm39_v1_chr11_+_76092833_76092858	1.65594	AAAGUGC	ENSMUST00000094014.10|Tlcd3a|ENSMUSG00000069808.14|TLC domain containing 3A
mm39_v1_chr15_+_95688712_95688755	1.6449	AAAGUGC	ENSMUST00000071874.8|Ano6|ENSMUSG00000064210.8|anoctamin 6
mm39_v1_chr2_-_131871725_131871921	1.62725	AAAGUGC	ENSMUST00000028814.15|Rassf2|ENSMUSG00000027339.16|Ras association (RalGDS/AF-6) domain family member 2
mm39_v1_chr18_-_4352944_4353015	1.59885	AAAGUGC	ENSMUST00000025078.10|Map3k8|ENSMUSG00000024235.12|mitogen-activated protein kinase kinase kinase 8
mm39_v1_chr15_-_60696790_60696929	1.5585	AAAGUGC	ENSMUST00000100635.5|Lratd2|ENSMUSG00000072568.5|LRAT domain containing 1
mm39_v1_chr4_-_135161044_135161180	1.55414	AAAGUGC	ENSMUST00000156635.2|Rcan3|ENSMUSG00000059713.13|regulator of calcineurin 3	ENSMUST00000030606.14|Rcan3|ENSMUSG00000059713.13|regulator of calcineurin 3
mm39_v1_chr4_-_155306992_155307049	1.54923	AAAGUGC	ENSMUST00000084103.10|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)	ENSMUST00000030917.6|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)
mm39_v1_chr6_-_145811028_145811085	1.54863	AAAGUGC	ENSMUST00000111703.2|Bhlhe41|ENSMUSG00000030256.12|basic helix-loop-helix family, member e41
mm39_v1_chr10_-_67748461_67748515	1.54373	AAAGUGC	ENSMUST00000064656.8|Zfp365|ENSMUSG00000037855.16|zinc finger protein 365
mm39_v1_chr6_-_85351524_85351546	1.52656	AAAGUGC	ENSMUST00000060837.10|Rab11fip5|ENSMUSG00000051343.12|RAB11 family interacting protein 5 (class I)
mm39_v1_chr14_+_26959975_26960003	1.50421	AAAGUGC	ENSMUST00000049206.6|Arhgef3|ENSMUSG00000021895.11|Rho guanine nucleotide exchange factor (GEF) 3
mm39_v1_chr3_-_122413361_122413372	1.50086	AAAGUGC	ENSMUST00000239148.2|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like	ENSMUST00000162409.8|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like	ENSMUST00000162947.3|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like
mm39_v1_chr17_-_66826661_66826724	1.50024	AAAGUGC	ENSMUST00000167962.2|Rab12|ENSMUSG00000023460.14|RAB12, member RAS oncogene family	ENSMUST00000070538.12|Rab12|ENSMUSG00000023460.14|RAB12, member RAS oncogene family
mm39_v1_chr6_+_72391283_72391302	1.49018	AAAGUGC	ENSMUST00000065906.9|Ggcx|ENSMUSG00000053460.9|gamma-glutamyl carboxylase
mm39_v1_chr3_-_87081939_87082054	1.48728	AAAGUGC	ENSMUST00000159976.8|Kirrel|ENSMUSG00000041734.16|kirre like nephrin family adhesion molecule 1	ENSMUST00000107618.9|Kirrel|ENSMUSG00000041734.16|kirre like nephrin family adhesion molecule 1
mm39_v1_chr5_-_66775979_66776056	1.48686	AAAGUGC	ENSMUST00000162382.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000159786.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000162349.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000087256.12|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000160103.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000160870.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2
mm39_v1_chr9_-_42035560_42035631	1.47845	AAAGUGC	ENSMUST00000060989.9|Sorl1|ENSMUSG00000049313.9|sortilin-related receptor, LDLR class A repeats-containing
mm39_v1_chr9_+_121589044_121589127	1.46925	AAAGUGC	ENSMUST00000093772.4|Zfp651|ENSMUSG00000013419.8|zinc finger protein 651
mm39_v1_chr2_-_102282844_102282844	1.46873	AAAGUGC	ENSMUST00000099678.5|Fjx1|ENSMUSG00000075012.5|four jointed box 1
mm39_v1_chr14_-_67106037_67106137	1.44736	AAAGUGC	ENSMUST00000022629.9|Dpysl2|ENSMUSG00000022048.9|dihydropyrimidinase-like 2
mm39_v1_chr11_-_103158190_103158298	1.44169	AAAGUGC	ENSMUST00000021324.3|Map3k14|ENSMUSG00000020941.8|mitogen-activated protein kinase kinase kinase 14
mm39_v1_chr3_+_38941089_38941089	1.44094	AAAGUGC	ENSMUST00000061260.8|Fat4|ENSMUSG00000046743.7|FAT atypical cadherin 4
mm39_v1_chr5_+_8472831_8472906	1.43691	AAAGUGC	ENSMUST00000066921.10|Slc25a40|ENSMUSG00000054099.12|solute carrier family 25, member 40	ENSMUST00000170496.6|Slc25a40|ENSMUSG00000054099.12|solute carrier family 25, member 40
mm39_v1_chr2_+_79085844_79085998	1.42999	AAAGUGC	ENSMUST00000099972.5|Itga4|ENSMUSG00000027009.19|integrin alpha 4
mm39_v1_chr1_+_131755715_131755757	1.41513	AAAGUGC	ENSMUST00000086559.7|Slc41a1|ENSMUSG00000013275.10|solute carrier family 41, member 1
mm39_v1_chr14_-_36690726_36690751	1.40871	AAAGUGC	ENSMUST00000090024.11|Ccser2|ENSMUSG00000058690.15|coiled-coil serine rich 2
mm39_v1_chr5_+_137517140_137517140	1.4084	AAAGUGC	ENSMUST00000031727.10|Gigyf1|ENSMUSG00000029714.12|GRB10 interacting GYF protein 1
mm39_v1_chr9_+_7764042_7764179	1.36406	AAAGUGC	ENSMUST00000052865.16|Tmem123|ENSMUSG00000050912.16|transmembrane protein 123
mm39_v1_chr8_-_27664651_27664680	1.35566	AAAGUGC	ENSMUST00000054212.7|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)	ENSMUST00000033878.14|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)	ENSMUST00000209377.2|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)
mm39_v1_chr15_+_6416229_6416270	1.34829	AAAGUGC	ENSMUST00000110664.9|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein	ENSMUST00000110663.9|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein	ENSMUST00000161812.8|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein	ENSMUST00000160134.8|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein
mm39_v1_chr18_+_69478790_69478882	1.32826	AAAGUGC	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr13_-_6698751_6698815	1.31681	AAAGUGC	ENSMUST00000021614.14|Pfkp|ENSMUSG00000021196.15|phosphofructokinase, platelet	ENSMUST00000138703.8|Pfkp|ENSMUSG00000021196.15|phosphofructokinase, platelet
mm39_v1_chr1_+_155034452_155034522	1.31632	AAAGUGC	ENSMUST00000027743.13|Stx6|ENSMUSG00000026470.15|syntaxin 6	ENSMUST00000195302.6|Stx6|ENSMUSG00000026470.15|syntaxin 6
mm39_v1_chr12_+_84161095_84161165	1.30913	AAAGUGC	ENSMUST00000123491.8|Dnal1|ENSMUSG00000042523.13|dynein, axonemal, light chain 1	ENSMUST00000046340.9|Dnal1|ENSMUSG00000042523.13|dynein, axonemal, light chain 1	ENSMUST00000136159.2|Dnal1|ENSMUSG00000042523.13|dynein, axonemal, light chain 1
mm39_v1_chr17_-_43978056_43978105	1.30761	AAAGUGC	ENSMUST00000024705.6|Slc25a27|ENSMUSG00000023912.11|solute carrier family 25, member 27
mm39_v1_chr7_+_73025243_73025299	1.29394	AAAGUGC	ENSMUST00000119206.3|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A	ENSMUST00000094312.12|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A
mm39_v1_chr18_+_32948436_32948436	1.29289	AAAGUGC	ENSMUST00000025237.5|Tslp|ENSMUSG00000024379.5|thymic stromal lymphopoietin
mm39_v1_chr11_-_6425877_6425917	1.28988	AAAGUGC	ENSMUST00000179343.3|Purb|ENSMUSG00000094483.3|purine rich element binding protein B
mm39_v1_chr11_-_69304501_69304501	1.28664	AAAGUGC	ENSMUST00000094077.5|Kdm6b|ENSMUSG00000018476.8|KDM1 lysine (K)-specific demethylase 6B
mm39_v1_chr4_+_53631460_53631574	1.27944	AAAGUGC	ENSMUST00000132151.8|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like	ENSMUST00000159415.9|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like	ENSMUST00000163067.9|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like
mm39_v1_chr3_-_108322868_108322868	1.26293	AAAGUGC	ENSMUST00000090558.10|Celsr2|ENSMUSG00000068740.14|cadherin, EGF LAG seven-pass G-type receptor 2
mm39_v1_chr10_+_62816005_62816041	1.25325	AAAGUGC	ENSMUST00000131718.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2	ENSMUST00000119567.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2	ENSMUST00000122231.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2
mm39_v1_chr6_+_34686373_34686381	1.24734	AAAGUGC	ENSMUST00000115021.8|Cald1|ENSMUSG00000029761.17|caldesmon 1
mm39_v1_chr16_+_78098344_78098384	1.23507	AAAGUGC	ENSMUST00000232148.2|Cxadr|ENSMUSG00000022865.15|coxsackie virus and adenovirus receptor	ENSMUST00000023572.15|Cxadr|ENSMUSG00000022865.15|coxsackie virus and adenovirus receptor
mm39_v1_chr11_-_40646090_40646138	1.23471	AAAGUGC	ENSMUST00000020576.8|Ccng1|ENSMUSG00000020326.8|cyclin G1
mm39_v1_chr12_+_55883101_55883146	1.23387	AAAGUGC	ENSMUST00000059250.8|Brms1l|ENSMUSG00000012076.9|breast cancer metastasis-suppressor 1-like
mm39_v1_chr19_-_28657477_28657523	1.23068	AAAGUGC	ENSMUST00000162022.8|Glis3|ENSMUSG00000052942.14|GLIS family zinc finger 3	ENSMUST00000112612.9|Glis3|ENSMUSG00000052942.14|GLIS family zinc finger 3
mm39_v1_chr11_-_106679312_106679358	1.22241	AAAGUGC	ENSMUST00000021062.12|Ddx5|ENSMUSG00000020719.15|DEAD box helicase 5
mm39_v1_chr15_-_99268311_99268389	1.20383	AAAGUGC	ENSMUST00000081224.14|Fmnl3|ENSMUSG00000023008.19|formin-like 3	ENSMUST00000120633.2|Fmnl3|ENSMUSG00000023008.19|formin-like 3	ENSMUST00000088233.13|Fmnl3|ENSMUSG00000023008.19|formin-like 3
mm39_v1_chr1_-_126758369_126758515	1.19116	AAAGUGC	ENSMUST00000112583.8|Nckap5|ENSMUSG00000049690.16|NCK-associated protein 5	ENSMUST00000094609.10|Nckap5|ENSMUSG00000049690.16|NCK-associated protein 5
mm39_v1_chr6_-_90787100_90787142	1.19023	AAAGUGC	ENSMUST00000101151.10|Iqsec1|ENSMUSG00000034312.16|IQ motif and Sec7 domain 1
mm39_v1_chr6_-_129252396_129252402	1.1843	AAAGUGC	ENSMUST00000032259.6|Cd69|ENSMUSG00000030156.6|CD69 antigen
mm39_v1_chr9_-_63929308_63929357	1.18147	AAAGUGC	ENSMUST00000179458.2|Smad6|ENSMUSG00000036867.8|SMAD family member 6	ENSMUST00000041029.6|Smad6|ENSMUSG00000036867.8|SMAD family member 6
mm39_v1_chr18_+_75500600_75500632	1.17593	AAAGUGC	ENSMUST00000026999.10|Smad7|ENSMUSG00000025880.12|SMAD family member 7
mm39_v1_chr1_-_51517548_51517584	1.15404	AAAGUGC	ENSMUST00000027279.12|Nabp1|ENSMUSG00000026107.12|nucleic acid binding protein 1	ENSMUST00000186684.7|Nabp1|ENSMUSG00000026107.12|nucleic acid binding protein 1	ENSMUST00000188204.7|Nabp1|ENSMUSG00000026107.12|nucleic acid binding protein 1	ENSMUST00000185534.2|Nabp1|ENSMUSG00000026107.12|nucleic acid binding protein 1	ENSMUST00000188051.7|Nabp1|ENSMUSG00000026107.12|nucleic acid binding protein 1
mm39_v1_chr10_+_39245746_39245808	1.15082	AAAGUGC	ENSMUST00000063091.13|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000099967.10|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000126486.8|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene
mm39_v1_chr2_+_167922924_167922956	1.14839	AAAGUGC	ENSMUST00000052125.7|Pard6b|ENSMUSG00000044641.8|par-6 family cell polarity regulator beta
mm39_v1_chr1_+_131935342_131935373	1.14583	AAAGUGC	ENSMUST00000086556.12|Elk4|ENSMUSG00000026436.16|ELK4, member of ETS oncogene family
mm39_v1_chr12_+_102095260_102095433	1.14578	AAAGUGC	ENSMUST00000079020.12|Slc24a4|ENSMUSG00000041771.15|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm39_v1_chr7_-_144493560_144493606	1.13598	AAAGUGC	ENSMUST00000093962.5|Ccnd1|ENSMUSG00000070348.6|cyclin D1
mm39_v1_chr7_+_48896560_48896592	1.11745	AAAGUGC	ENSMUST00000184945.8|Nav2|ENSMUSG00000052512.18|neuron navigator 2
mm39_v1_chr6_-_13607963_13608099	1.10842	AAAGUGC	ENSMUST00000031554.9|Tmem168|ENSMUSG00000029569.10|transmembrane protein 168	ENSMUST00000149123.3|Tmem168|ENSMUSG00000029569.10|transmembrane protein 168
mm39_v1_chr2_+_59442378_59442453	1.10616	AAAGUGC	ENSMUST00000112568.8|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	ENSMUST00000037526.11|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm39_v1_chr18_+_63055388_63055410	1.10583	AAAGUGC	ENSMUST00000096554.12|Apcdd1|ENSMUSG00000071847.14|adenomatosis polyposis coli down-regulated 1	ENSMUST00000163716.3|Apcdd1|ENSMUSG00000071847.14|adenomatosis polyposis coli down-regulated 1
mm39_v1_chr12_+_8971603_8971673	1.1035	AAAGUGC	ENSMUST00000020909.4|Laptm4a|ENSMUSG00000020585.5|lysosomal-associated protein transmembrane 4A
mm39_v1_chr14_+_26760898_26760951	1.10215	AAAGUGC	ENSMUST00000035336.5|Il17rd|ENSMUSG00000040717.7|interleukin 17 receptor D
mm39_v1_chr6_+_122796847_122796897	1.08692	AAAGUGC	ENSMUST00000003238.14|Foxj2|ENSMUSG00000003154.16|forkhead box J2
mm39_v1_chr6_-_13677928_13677974	1.08278	AAAGUGC	ENSMUST00000203078.2|Bmt2|ENSMUSG00000042742.8|base methyltransferase of 25S rRNA 2	ENSMUST00000045235.8|Bmt2|ENSMUSG00000042742.8|base methyltransferase of 25S rRNA 2
mm39_v1_chr8_+_79755194_79755242	1.07914	AAAGUGC	ENSMUST00000119254.8|Zfp827|ENSMUSG00000071064.16|zinc finger protein 827	ENSMUST00000238669.2|Zfp827|ENSMUSG00000071064.16|zinc finger protein 827
mm39_v1_chr15_+_37233280_37233318	1.07338	AAAGUGC	ENSMUST00000161405.8|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2	ENSMUST00000022895.15|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2	ENSMUST00000161532.2|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2
mm39_v1_chr13_-_8921732_8921945	1.06999	AAAGUGC	ENSMUST00000054251.13|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37	ENSMUST00000176813.8|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37	ENSMUST00000175958.2|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37
mm39_v1_chr12_-_65010124_65010159	1.06987	AAAGUGC	ENSMUST00000021331.9|Klhl28|ENSMUSG00000020948.10|kelch-like 28
mm39_v1_chr8_-_25506756_25506892	1.06961	AAAGUGC	ENSMUST00000084032.6|Adam9|ENSMUSG00000031555.16|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	ENSMUST00000207132.2|Adam9|ENSMUSG00000031555.16|a disintegrin and metallopeptidase domain 9 (meltrin gamma)
mm39_v1_chr17_+_26633794_26633939	1.03354	AAAGUGC	ENSMUST00000182897.8|Neurl1b|ENSMUSG00000034413.15|neuralized E3 ubiquitin protein ligase 1B	ENSMUST00000183077.8|Neurl1b|ENSMUSG00000034413.15|neuralized E3 ubiquitin protein ligase 1B	ENSMUST00000053020.8|Neurl1b|ENSMUSG00000034413.15|neuralized E3 ubiquitin protein ligase 1B
mm39_v1_chr12_-_87247082_87247228	1.01651	AAAGUGC	ENSMUST00000037418.7|Tmed8|ENSMUSG00000034111.7|transmembrane p24 trafficking protein 8
mm39_v1_chr15_-_66985760_66985841	1.01643	AAAGUGC	ENSMUST00000092640.6|St3gal1|ENSMUSG00000013846.11|ST3 beta-galactoside alpha-2,3-sialyltransferase 1
mm39_v1_chr9_-_44792575_44792621	1.01382	AAAGUGC	ENSMUST00000114689.8|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000002095.11|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000128768.3|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A
mm39_v1_chr16_-_78173645_78173706	1.0078	AAAGUGC	ENSMUST00000023570.14|Btg3|ENSMUSG00000022863.16|BTG anti-proliferation factor 3
mm39_v1_chr3_-_102111892_102112009	1.00242	AAAGUGC	ENSMUST00000029453.13|Vangl1|ENSMUSG00000027860.16|VANGL planar cell polarity 1
mm39_v1_chr13_+_56850795_56850925	0.993238	AAAGUGC	ENSMUST00000069557.14|Smad5|ENSMUSG00000021540.17|SMAD family member 5	ENSMUST00000109876.8|Smad5|ENSMUSG00000021540.17|SMAD family member 5
mm39_v1_chr2_-_166555678_166555752	0.987138	AAAGUGC	ENSMUST00000036719.12|Prex1|ENSMUSG00000039621.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
mm39_v1_chr9_+_59658156_59658205	0.980485	AAAGUGC	ENSMUST00000136740.8|Myo9a|ENSMUSG00000039585.16|myosin IXa	ENSMUST00000135298.8|Myo9a|ENSMUSG00000039585.16|myosin IXa	ENSMUST00000128341.2|Myo9a|ENSMUSG00000039585.16|myosin IXa
mm39_v1_chr5_-_23821523_23821596	0.976886	AAAGUGC	ENSMUST00000088392.9|Srpk2|ENSMUSG00000062604.12|serine/arginine-rich protein specific kinase 2
mm39_v1_chr6_-_127128007_127128023	0.976856	AAAGUGC	ENSMUST00000000188.12|Ccnd2|ENSMUSG00000000184.13|cyclin D2
mm39_v1_chr2_-_19002932_19002971	0.963228	AAAGUGC	ENSMUST00000006912.12|Pip4k2a|ENSMUSG00000026737.13|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
mm39_v1_chr17_+_29312737_29312755	0.953491	AAAGUGC	ENSMUST00000023829.8|Cdkn1a|ENSMUSG00000023067.15|cyclin-dependent kinase inhibitor 1A (P21)	ENSMUST00000233296.2|Cdkn1a|ENSMUSG00000023067.15|cyclin-dependent kinase inhibitor 1A (P21)
mm39_v1_chr19_+_16933471_16933508	0.952738	AAAGUGC	ENSMUST00000087689.5|Prune2|ENSMUSG00000039126.11|prune homolog 2
mm39_v1_chr5_-_140375010_140375019	0.943828	AAAGUGC	ENSMUST00000031539.12|Snx8|ENSMUSG00000029560.13|sorting nexin 8
mm39_v1_chr12_-_101879375_101879526	0.937509	AAAGUGC	ENSMUST00000177536.8|Trip11|ENSMUSG00000021188.15|thyroid hormone receptor interactor 11	ENSMUST00000176728.2|Trip11|ENSMUSG00000021188.15|thyroid hormone receptor interactor 11	ENSMUST00000021605.14|Trip11|ENSMUSG00000021188.15|thyroid hormone receptor interactor 11
mm39_v1_chr1_-_160958998_160959081	0.936609	AAAGUGC	ENSMUST00000111611.8|Klhl20|ENSMUSG00000026705.17|kelch-like 20
mm39_v1_chr12_+_40495951_40496015	0.93314	AAAGUGC	ENSMUST00000037488.8|Dock4|ENSMUSG00000035954.11|dedicator of cytokinesis 4
mm39_v1_chr4_+_6191084_6191122	0.93143	AAAGUGC	ENSMUST00000029907.6|Ubxn2b|ENSMUSG00000028243.6|UBX domain protein 2B
mm39_v1_chr16_-_91394522_91394688	0.930973	AAAGUGC	ENSMUST00000023686.15|Tmem50b|ENSMUSG00000022964.15|transmembrane protein 50B
mm39_v1_chr11_-_72302520_72302573	0.926085	AAAGUGC	ENSMUST00000108500.8|Smtnl2|ENSMUSG00000045667.15|smoothelin-like 2	ENSMUST00000050226.7|Smtnl2|ENSMUSG00000045667.15|smoothelin-like 2
mm39_v1_chr17_+_25407352_25407392	0.925827	AAAGUGC	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chrX_+_98179725_98179744	0.924754	AAAGUGC	ENSMUST00000052839.7|Efnb1|ENSMUSG00000031217.9|ephrin B1
mm39_v1_chr15_-_50753061_50753118	0.92313	AAAGUGC	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr11_-_101117237_101117289	0.921082	AAAGUGC	ENSMUST00000100417.3|Ezh1|ENSMUSG00000006920.15|enhancer of zeste 1 polycomb repressive complex 2 subunit	ENSMUST00000107285.8|Ezh1|ENSMUSG00000006920.15|enhancer of zeste 1 polycomb repressive complex 2 subunit	ENSMUST00000107284.8|Ezh1|ENSMUSG00000006920.15|enhancer of zeste 1 polycomb repressive complex 2 subunit
mm39_v1_chr9_+_95836797_95836836	0.918099	AAAGUGC	ENSMUST00000034981.14|Xrn1|ENSMUSG00000032410.14|5'-3' exoribonuclease 1	ENSMUST00000185633.7|Xrn1|ENSMUSG00000032410.14|5'-3' exoribonuclease 1
mm39_v1_chr19_+_29344846_29344868	0.908914	AAAGUGC	ENSMUST00000016640.8|Cd274|ENSMUSG00000016496.8|CD274 antigen
mm39_v1_chr2_-_60793536_60793595	0.907571	AAAGUGC	ENSMUST00000028347.13|Rbms1|ENSMUSG00000026970.17|RNA binding motif, single stranded interacting protein 1
mm39_v1_chr12_+_24701273_24701410	0.906071	AAAGUGC	ENSMUST00000020982.7|Klf11|ENSMUSG00000020653.13|Kruppel-like factor 11
mm39_v1_chr7_-_30850429_30850507	0.900879	AAAGUGC	ENSMUST00000085636.13|Gramd1a|ENSMUSG00000001248.16|GRAM domain containing 1A	ENSMUST00000001280.14|Gramd1a|ENSMUSG00000001248.16|GRAM domain containing 1A
mm39_v1_chr4_-_44167509_44167609	0.900657	AAAGUGC	ENSMUST00000098098.9|Rnf38|ENSMUSG00000035696.16|ring finger protein 38
mm39_v1_chr1_+_59952131_59952186	0.895446	AAAGUGC	ENSMUST00000036540.12|Fam117b|ENSMUSG00000041040.13|family with sequence similarity 117, member B
mm39_v1_chr2_+_153583194_153583214	0.882434	AAAGUGC	ENSMUST00000028981.9|Mapre1|ENSMUSG00000027479.15|microtubule-associated protein, RP/EB family, member 1
mm39_v1_chr11_+_105480796_105480857	0.877796	AAAGUGC	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr2_+_80469142_80469216	0.858861	AAAGUGC	ENSMUST00000028382.13|Nup35|ENSMUSG00000026999.15|nucleoporin 35	ENSMUST00000124377.2|Nup35|ENSMUSG00000026999.15|nucleoporin 35
mm39_v1_chr2_+_127178072_127178086	0.856406	AAAGUGC	ENSMUST00000028846.7|Dusp2|ENSMUSG00000027368.7|dual specificity phosphatase 2
mm39_v1_chr1_-_172125555_172125631	0.855941	AAAGUGC	ENSMUST00000085913.11|Atp1a2|ENSMUSG00000007097.15|ATPase, Na+/K+ transporting, alpha 2 polypeptide	ENSMUST00000097464.4|Atp1a2|ENSMUSG00000007097.15|ATPase, Na+/K+ transporting, alpha 2 polypeptide
mm39_v1_chr8_+_11808349_11808375	0.854874	AAAGUGC	ENSMUST00000074856.13|Arhgef7|ENSMUSG00000031511.17|Rho guanine nucleotide exchange factor (GEF7)	ENSMUST00000098938.9|Arhgef7|ENSMUSG00000031511.17|Rho guanine nucleotide exchange factor (GEF7)
mm39_v1_chr6_-_92191878_92191906	0.854457	AAAGUGC	ENSMUST00000014694.11|Rbsn|ENSMUSG00000014550.15|rabenosyn, RAB effector
mm39_v1_chr10_+_42554888_42554945	0.852577	AAAGUGC	ENSMUST00000040718.6|Ostm1|ENSMUSG00000038280.13|osteopetrosis associated transmembrane protein 1
mm39_v1_chr6_-_72593983_72593983	0.844347	AAAGUGC	ENSMUST00000070524.5|Tgoln1|ENSMUSG00000056429.5|trans-golgi network protein
mm39_v1_chr10_+_19810037_19810272	0.843082	AAAGUGC	ENSMUST00000095806.10|Map3k5|ENSMUSG00000071369.12|mitogen-activated protein kinase kinase kinase 5	ENSMUST00000120259.8|Map3k5|ENSMUSG00000071369.12|mitogen-activated protein kinase kinase kinase 5
mm39_v1_chr6_-_148847854_148847995	0.83145	AAAGUGC	ENSMUST00000139355.8|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000146457.2|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000054080.15|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor
mm39_v1_chr9_-_82857528_82857569	0.830004	AAAGUGC	ENSMUST00000034787.12|Phip|ENSMUSG00000032253.14|pleckstrin homology domain interacting protein
mm39_v1_chrX_-_163763273_163763333	0.824876	AAAGUGC	ENSMUST00000112247.9|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2	ENSMUST00000004715.2|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2
mm39_v1_chr1_-_45964730_45964749	0.821066	AAAGUGC	ENSMUST00000027137.11|Slc40a1|ENSMUSG00000025993.11|solute carrier family 40 (iron-regulated transporter), member 1
mm39_v1_chr11_-_40583493_40583601	0.817238	AAAGUGC	ENSMUST00000040167.11|Mat2b|ENSMUSG00000042032.14|methionine adenosyltransferase II, beta
mm39_v1_chr17_-_16046780_16046853	0.81608	AAAGUGC	ENSMUST00000232638.2|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B	ENSMUST00000170578.3|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B
mm39_v1_chr4_+_152181155_152181176	0.81156	AAAGUGC	ENSMUST00000105661.10|Plekhg5|ENSMUSG00000039713.18|pleckstrin homology domain containing, family G (with RhoGef domain) member 5	ENSMUST00000084115.4|Plekhg5|ENSMUSG00000039713.18|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
mm39_v1_chr8_-_105169621_105169679	0.809489	AAAGUGC	ENSMUST00000041769.8|Dync1li2|ENSMUSG00000035770.9|dynein, cytoplasmic 1 light intermediate chain 2
mm39_v1_chr3_-_57483175_57483257	0.805915	AAAGUGC	ENSMUST00000029380.14|Wwtr1|ENSMUSG00000027803.15|WW domain containing transcription regulator 1
mm39_v1_chr3_+_87524848_87524920	0.801012	AAAGUGC	ENSMUST00000039476.15|Arhgef11|ENSMUSG00000041977.19|Rho guanine nucleotide exchange factor (GEF) 11	ENSMUST00000129113.8|Arhgef11|ENSMUSG00000041977.19|Rho guanine nucleotide exchange factor (GEF) 11
mm39_v1_chr3_+_102903024_102903092	0.79918	AAAGUGC	ENSMUST00000029447.12|Sike1|ENSMUSG00000027854.13|suppressor of IKBKE 1
mm39_v1_chr14_+_69266566_69266687	0.795728	AAAGUGC	ENSMUST00000014957.10|Stc1|ENSMUSG00000014813.10|stanniocalcin 1
mm39_v1_chr11_+_105975403_105975449	0.789155	AAAGUGC	ENSMUST00000002044.10|Map3k3|ENSMUSG00000020700.12|mitogen-activated protein kinase kinase kinase 3
mm39_v1_chr3_-_31023547_31023573	0.78749	AAAGUGC	ENSMUST00000064718.12|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000177992.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000129817.9|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000168645.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000108255.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000099163.5|Phc3|ENSMUSG00000037652.16|polyhomeotic 3
mm39_v1_chr2_-_92264374_92264398	0.782184	AAAGUGC	ENSMUST00000111278.2|Cry2|ENSMUSG00000068742.12|cryptochrome 2 (photolyase-like)	ENSMUST00000090559.12|Cry2|ENSMUSG00000068742.12|cryptochrome 2 (photolyase-like)
mm39_v1_chr6_-_52141796_52141816	0.774537	AAAGUGC	ENSMUST00000014848.11|Hoxa2|ENSMUSG00000014704.11|homeobox A2
mm39_v1_chrX_+_158038778_158038894	0.773973	AAAGUGC	ENSMUST00000126686.8|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3	ENSMUST00000033671.13|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chr13_-_47083194_47083276	0.763734	AAAGUGC	ENSMUST00000056978.8|Kif13a|ENSMUSG00000021375.12|kinesin family member 13A
mm39_v1_chr12_+_71062733_71062837	0.763233	AAAGUGC	ENSMUST00000046305.12|Arid4a|ENSMUSG00000048118.18|AT rich interactive domain 4A (RBP1-like)
mm39_v1_chr9_-_90152759_90152898	0.763051	AAAGUGC	ENSMUST00000041767.14|Tbc1d2b|ENSMUSG00000037410.14|TBC1 domain family, member 2B	ENSMUST00000128874.3|Tbc1d2b|ENSMUSG00000037410.14|TBC1 domain family, member 2B
mm39_v1_chr2_-_110193502_110193528	0.76016	AAAGUGC	ENSMUST00000099626.5|Fibin|ENSMUSG00000074971.5|fin bud initiation factor homolog (zebrafish)
mm39_v1_chr11_-_103303480_103303537	0.758786	AAAGUGC	ENSMUST00000041272.10|Plekhm1|ENSMUSG00000034247.10|pleckstrin homology domain containing, family M (with RUN domain) member 1
mm39_v1_chr13_-_13568106_13568209	0.75773	AAAGUGC	ENSMUST00000021738.10|Gpr137b|ENSMUSG00000021306.12|G protein-coupled receptor 137B	ENSMUST00000220628.2|Gpr137b|ENSMUSG00000021306.12|G protein-coupled receptor 137B
mm39_v1_chr10_-_17823736_17823846	0.740166	AAAGUGC	ENSMUST00000037879.8|Heca|ENSMUSG00000039879.10|hdc homolog, cell cycle regulator
mm39_v1_chr7_-_67409432_67409507	0.733491	AAAGUGC	ENSMUST00000208815.2|Synm|ENSMUSG00000030554.17|synemin, intermediate filament protein	ENSMUST00000074233.12|Synm|ENSMUSG00000030554.17|synemin, intermediate filament protein	ENSMUST00000208231.2|Synm|ENSMUSG00000030554.17|synemin, intermediate filament protein	ENSMUST00000051389.10|Synm|ENSMUSG00000030554.17|synemin, intermediate filament protein
mm39_v1_chr17_-_14914484_14914503	0.733001	AAAGUGC	ENSMUST00000170872.3|Thbs2|ENSMUSG00000023885.10|thrombospondin 2
mm39_v1_chr2_+_4405769_4405786	0.729814	AAAGUGC	ENSMUST00000075767.14|Frmd4a|ENSMUSG00000026657.18|FERM domain containing 4A
mm39_v1_chr13_+_49495025_49495099	0.725524	AAAGUGC	ENSMUST00000048544.14|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110084.4|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110085.11|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2
mm39_v1_chr2_+_139520098_139520098	0.71646	AAAGUGC	ENSMUST00000184404.8|Ism1|ENSMUSG00000074766.11|isthmin 1, angiogenesis inhibitor	ENSMUST00000099307.4|Ism1|ENSMUSG00000074766.11|isthmin 1, angiogenesis inhibitor
mm39_v1_chr10_-_26249952_26250084	0.706886	AAAGUGC	ENSMUST00000105519.10|L3mbtl3|ENSMUSG00000039089.16|L3MBTL3 histone methyl-lysine binding protein	ENSMUST00000040219.13|L3mbtl3|ENSMUSG00000039089.16|L3MBTL3 histone methyl-lysine binding protein
mm39_v1_chr19_+_28967875_28967902	0.699629	AAAGUGC	ENSMUST00000224599.2|Cdc37l1|ENSMUSG00000024780.8|cell division cycle 37-like 1	ENSMUST00000050148.5|Cdc37l1|ENSMUSG00000024780.8|cell division cycle 37-like 1
mm39_v1_chr3_+_31149201_31149244	0.699326	AAAGUGC	ENSMUST00000118470.8|Skil|ENSMUSG00000027660.17|SKI-like	ENSMUST00000029194.12|Skil|ENSMUSG00000027660.17|SKI-like	ENSMUST00000123532.2|Skil|ENSMUSG00000027660.17|SKI-like
mm39_v1_chr4_-_126323291_126323349	0.696163	AAAGUGC	ENSMUST00000069097.13|Ago3|ENSMUSG00000028842.16|argonaute RISC catalytic subunit 3
mm39_v1_chr19_+_7394951_7395015	0.691604	AAAGUGC	ENSMUST00000159348.3|2700081O15Rik|ENSMUSG00000053080.11|RIKEN cDNA 2700081O15 gene
mm39_v1_chr7_-_29204812_29204898	0.688937	AAAGUGC	ENSMUST00000183096.8|Sipa1l3|ENSMUSG00000030583.17|signal-induced proliferation-associated 1 like 3	ENSMUST00000085809.11|Sipa1l3|ENSMUSG00000030583.17|signal-induced proliferation-associated 1 like 3
mm39_v1_chr16_-_55755208_55755243	0.687745	AAAGUGC	ENSMUST00000121129.8|Cep97|ENSMUSG00000022604.19|centrosomal protein 97	ENSMUST00000023270.14|Cep97|ENSMUSG00000022604.19|centrosomal protein 97
mm39_v1_chr12_-_102844537_102844709	0.683814	AAAGUGC	ENSMUST00000045652.8|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7	ENSMUST00000223554.2|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7
mm39_v1_chr4_+_24973419_24973419	0.67821	AAAGUGC	ENSMUST00000038920.2|Gpr63|ENSMUSG00000040372.3|G protein-coupled receptor 63
mm39_v1_chrX_+_149829131_149829146	0.675181	AAAGUGC	ENSMUST00000112685.8|Fgd1|ENSMUSG00000025265.15|FYVE, RhoGEF and PH domain containing 1
mm39_v1_chr8_-_26609153_26609260	0.674065	AAAGUGC	ENSMUST00000037182.14|Hook3|ENSMUSG00000037234.18|hook microtubule tethering protein 3
mm39_v1_chr8_-_81607109_81607129	0.671834	AAAGUGC	ENSMUST00000034150.10|Gab1|ENSMUSG00000031714.10|growth factor receptor bound protein 2-associated protein 1
mm39_v1_chr13_+_45543208_45543226	0.670415	AAAGUGC	ENSMUST00000038275.11|Mylip|ENSMUSG00000038175.11|myosin regulatory light chain interacting protein
mm39_v1_chr14_-_65499835_65499941	0.662331	AAAGUGC	ENSMUST00000131309.3|Fzd3|ENSMUSG00000007989.8|frizzled class receptor 3
mm39_v1_chr8_+_117884711_117884876	0.660237	AAAGUGC	ENSMUST00000064488.11|Gan|ENSMUSG00000052557.12|giant axonal neuropathy	ENSMUST00000162997.3|Gan|ENSMUSG00000052557.12|giant axonal neuropathy
mm39_v1_chr14_-_54815000_54815015	0.657356	AAAGUGC	ENSMUST00000054487.10|Ajuba|ENSMUSG00000022178.12|ajuba LIM protein
mm39_v1_chr4_+_149569717_149569764	0.653155	AAAGUGC	ENSMUST00000030842.8|Lzic|ENSMUSG00000028990.14|leucine zipper and CTNNBIP1 domain containing
mm39_v1_chr16_-_32688640_32688741	0.651359	AAAGUGC	ENSMUST00000089684.10|Rubcn|ENSMUSG00000035629.20|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	ENSMUST00000040986.15|Rubcn|ENSMUSG00000035629.20|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	ENSMUST00000115105.9|Rubcn|ENSMUSG00000035629.20|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
mm39_v1_chr4_-_45084564_45084610	0.6504	AAAGUGC	ENSMUST00000052236.13|Fbxo10|ENSMUSG00000048232.13|F-box protein 10
mm39_v1_chr14_-_31139617_31139634	0.646554	AAAGUGC	ENSMUST00000100730.10|Sh3bp5|ENSMUSG00000021892.15|SH3-domain binding protein 5 (BTK-associated)
mm39_v1_chr18_-_53877579_53877710	0.64555	AAAGUGC	ENSMUST00000049811.8|Cep120|ENSMUSG00000048799.9|centrosomal protein 120	ENSMUST00000237062.2|Cep120|ENSMUSG00000048799.9|centrosomal protein 120
mm39_v1_chr2_+_70948267_70948406	0.633852	AAAGUGC	ENSMUST00000028403.3|Cybrd1|ENSMUSG00000027015.5|cytochrome b reductase 1
mm39_v1_chr5_-_147662798_147662833	0.629703	AAAGUGC	ENSMUST00000110529.6|Flt1|ENSMUSG00000029648.14|FMS-like tyrosine kinase 1	ENSMUST00000031653.12|Flt1|ENSMUSG00000029648.14|FMS-like tyrosine kinase 1
mm39_v1_chr17_+_87061117_87061137	0.62746	AAAGUGC	ENSMUST00000024954.11|Epas1|ENSMUSG00000024140.11|endothelial PAS domain protein 1
mm39_v1_chr6_+_54303837_54303899	0.619805	AAAGUGC	ENSMUST00000059138.6|Prr15|ENSMUSG00000045725.6|proline rich 15
mm39_v1_chr8_+_33876353_33876353	0.618672	AAAGUGC	ENSMUST00000070340.6|Purg|ENSMUSG00000049184.7|purine-rich element binding protein G	ENSMUST00000078058.5|Purg|ENSMUSG00000049184.7|purine-rich element binding protein G
mm39_v1_chr5_-_114131934_114131964	0.618529	AAAGUGC	ENSMUST00000159592.8|Ssh1|ENSMUSG00000042121.17|slingshot protein phosphatase 1
mm39_v1_chr5_-_123887434_123887483	0.618097	AAAGUGC	ENSMUST00000182955.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000182489.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000183147.9|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000050827.14|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000057795.12|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000111515.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000182309.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2
mm39_v1_chr4_-_141966662_141966731	0.616974	AAAGUGC	ENSMUST00000036476.10|Kazn|ENSMUSG00000040606.15|kazrin, periplakin interacting protein
mm39_v1_chr2_+_84880776_84880847	0.615388	AAAGUGC	ENSMUST00000111605.9|Tnks1bp1|ENSMUSG00000033955.14|tankyrase 1 binding protein 1
mm39_v1_chr4_-_101122433_101122479	0.61534	AAAGUGC	ENSMUST00000149297.2|Jak1|ENSMUSG00000028530.15|Janus kinase 1	ENSMUST00000102781.10|Jak1|ENSMUSG00000028530.15|Janus kinase 1
mm39_v1_chr4_-_132237804_132237820	0.597407	AAAGUGC	ENSMUST00000030724.9|Sesn2|ENSMUSG00000028893.9|sestrin 2
mm39_v1_chr10_-_93146937_93147024	0.596522	AAAGUGC	ENSMUST00000008542.12|Elk3|ENSMUSG00000008398.17|ELK3, member of ETS oncogene family
mm39_v1_chr10_+_70276604_70276768	0.594617	AAAGUGC	ENSMUST00000173042.9|Fam13c|ENSMUSG00000043259.16|family with sequence similarity 13, member C	ENSMUST00000062883.7|Fam13c|ENSMUSG00000043259.16|family with sequence similarity 13, member C
mm39_v1_chr11_-_78427061_78427158	0.594543	AAAGUGC	ENSMUST00000017759.9|Tnfaip1|ENSMUSG00000017615.13|tumor necrosis factor, alpha-induced protein 1 (endothelial)	ENSMUST00000108277.3|Tnfaip1|ENSMUSG00000017615.13|tumor necrosis factor, alpha-induced protein 1 (endothelial)
mm39_v1_chr18_-_82710859_82711058	0.5925	AAAGUGC	ENSMUST00000182122.8|Zfp236|ENSMUSG00000041258.19|zinc finger protein 236	ENSMUST00000171071.9|Zfp236|ENSMUSG00000041258.19|zinc finger protein 236
mm39_v1_chr6_+_86826470_86826577	0.590169	AAAGUGC	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chr3_+_28835425_28835493	0.589284	AAAGUGC	ENSMUST00000060500.9|Eif5a2|ENSMUSG00000050192.9|eukaryotic translation initiation factor 5A2
mm39_v1_chr8_+_91796680_91796751	0.581422	AAAGUGC	ENSMUST00000034091.8|Rbl2|ENSMUSG00000031666.16|RB transcriptional corepressor like 2	ENSMUST00000211136.2|Rbl2|ENSMUSG00000031666.16|RB transcriptional corepressor like 2
mm39_v1_chr19_-_34724689_34724713	0.574154	AAAGUGC	ENSMUST00000009522.4|Slc16a12|ENSMUSG00000009378.5|solute carrier family 16 (monocarboxylic acid transporters), member 12
mm39_v1_chr16_-_50252703_50252772	0.57319	AAAGUGC	ENSMUST00000066037.13|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089399.11|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089404.10|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000138166.8|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing
mm39_v1_chr12_-_107969853_107969872	0.572365	AAAGUGC	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chr6_-_147165623_147165681	0.571683	AAAGUGC	ENSMUST00000052296.9|Pthlh|ENSMUSG00000048776.9|parathyroid hormone-like peptide	ENSMUST00000204197.2|Pthlh|ENSMUSG00000048776.9|parathyroid hormone-like peptide
mm39_v1_chr9_-_95393909_95394049	0.570495	AAAGUGC	ENSMUST00000190019.2|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing	ENSMUST00000185515.7|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing	ENSMUST00000217176.2|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing	ENSMUST00000079659.12|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing	ENSMUST00000078374.13|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing
mm39_v1_chr3_-_122778052_122778163	0.569805	AAAGUGC	ENSMUST00000199401.2|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53	ENSMUST00000197314.5|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53	ENSMUST00000197934.5|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53	ENSMUST00000090379.7|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53
mm39_v1_chr2_+_127967951_127967976	0.563963	AAAGUGC	ENSMUST00000089634.12|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000019281.14|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000110341.9|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000103211.8|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000103210.2|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)
mm39_v1_chr15_-_57998443_57998491	0.555968	AAAGUGC	ENSMUST00000038194.5|Atad2|ENSMUSG00000022360.9|ATPase family, AAA domain containing 2
mm39_v1_chr17_+_26934617_26934698	0.555344	AAAGUGC	ENSMUST00000062519.14|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000144221.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000142539.8|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000151681.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor
mm39_v1_chr15_-_31367668_31367727	0.552687	AAAGUGC	ENSMUST00000110410.10|Ankrd33b|ENSMUSG00000022237.18|ankyrin repeat domain 33B	ENSMUST00000076942.5|Ankrd33b|ENSMUSG00000022237.18|ankyrin repeat domain 33B
mm39_v1_chr10_-_121883196_121883227	0.549971	AAAGUGC	ENSMUST00000020322.12|Srgap1|ENSMUSG00000020121.16|SLIT-ROBO Rho GTPase activating protein 1	ENSMUST00000081688.13|Srgap1|ENSMUSG00000020121.16|SLIT-ROBO Rho GTPase activating protein 1
mm39_v1_chr5_-_134717443_134717491	0.543142	AAAGUGC	ENSMUST00000015137.10|Limk1|ENSMUSG00000029674.14|LIM-domain containing, protein kinase
mm39_v1_chr14_+_74878280_74878328	0.536776	AAAGUGC	ENSMUST00000036653.5|Htr2a|ENSMUSG00000034997.6|5-hydroxytryptamine (serotonin) receptor 2A
mm39_v1_chr12_-_81827893_81827949	0.5232	AAAGUGC	ENSMUST00000035987.9|Map3k9|ENSMUSG00000042724.9|mitogen-activated protein kinase kinase kinase 9
mm39_v1_chr16_-_18052937_18053048	0.521968	AAAGUGC	ENSMUST00000076957.7|Zdhhc8|ENSMUSG00000060166.7|zinc finger, DHHC domain containing 8
mm39_v1_chr12_-_119202527_119202599	0.52146	AAAGUGC	ENSMUST00000026360.9|Itgb8|ENSMUSG00000025321.15|integrin beta 8
mm39_v1_chr5_+_23639432_23639478	0.515632	AAAGUGC	ENSMUST00000094962.9|Kmt2e|ENSMUSG00000029004.16|lysine (K)-specific methyltransferase 2E	ENSMUST00000115128.8|Kmt2e|ENSMUSG00000029004.16|lysine (K)-specific methyltransferase 2E
mm39_v1_chr6_+_47812584_47812660	0.513641	AAAGUGC	ENSMUST00000079881.11|Zfp398|ENSMUSG00000062519.14|zinc finger protein 398	ENSMUST00000114598.3|Zfp398|ENSMUSG00000062519.14|zinc finger protein 398
mm39_v1_chr11_+_53660834_53660886	0.511949	AAAGUGC	ENSMUST00000108920.10|Irf1|ENSMUSG00000018899.18|interferon regulatory factor 1	ENSMUST00000140866.9|Irf1|ENSMUSG00000018899.18|interferon regulatory factor 1	ENSMUST00000108922.9|Irf1|ENSMUSG00000018899.18|interferon regulatory factor 1
mm39_v1_chr12_+_80837284_80837348	0.510337	AAAGUGC	ENSMUST00000220238.2|Susd6|ENSMUSG00000021133.10|sushi domain containing 6	ENSMUST00000068519.7|Susd6|ENSMUSG00000021133.10|sushi domain containing 6
mm39_v1_chr12_+_32428691_32428709	0.509815	AAAGUGC	ENSMUST00000172332.4|Ccdc71l|ENSMUSG00000090946.4|coiled-coil domain containing 71 like
mm39_v1_chr6_-_22356098_22356174	0.507456	AAAGUGC	ENSMUST00000165576.8|Fam3c|ENSMUSG00000029672.17|family with sequence similarity 3, member C
mm39_v1_chr2_-_167032068_167032093	0.499981	AAAGUGC	ENSMUST00000059826.10|Kcnb1|ENSMUSG00000050556.10|potassium voltage gated channel, Shab-related subfamily, member 1
mm39_v1_chr9_+_53448322_53448374	0.492144	AAAGUGC	ENSMUST00000035850.8|Npat|ENSMUSG00000033054.8|nuclear protein in the AT region
mm39_v1_chr3_+_30656766_30656802	0.48987	AAAGUGC	ENSMUST00000047502.9|Mynn|ENSMUSG00000037730.14|myoneurin
mm39_v1_chr19_+_38825005_38825056	0.484516	AAAGUGC	ENSMUST00000037302.6|Tbc1d12|ENSMUSG00000048720.9|TBC1D12: TBC1 domain family, member 12
mm39_v1_chr5_-_135573962_135573982	0.479136	AAAGUGC	ENSMUST00000060311.12|Hip1|ENSMUSG00000039959.14|huntingtin interacting protein 1
mm39_v1_chr7_-_121306476_121306685	0.477923	AAAGUGC	ENSMUST00000046929.7|Usp31|ENSMUSG00000063317.8|ubiquitin specific peptidase 31
mm39_v1_chr7_-_46608193_46608275	0.475508	AAAGUGC	ENSMUST00000094398.13|Uevld|ENSMUSG00000043262.17|UEV and lactate/malate dehyrogenase domains
mm39_v1_chr19_-_47680528_47680535	0.474199	AAAGUGC	ENSMUST00000026045.14|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1	ENSMUST00000086923.6|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1
mm39_v1_chr18_+_32296126_32296249	0.469076	AAAGUGC	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chrX_+_135950334_135950415	0.466982	AAAGUGC	ENSMUST00000047852.8|Fam199x|ENSMUSG00000042595.8|family with sequence similarity 199, X-linked
mm39_v1_chr1_+_6284823_6284907	0.461013	AAAGUGC	ENSMUST00000027040.13|Rb1cc1|ENSMUSG00000025907.15|RB1-inducible coiled-coil 1
mm39_v1_chrX_-_73129195_73129296	0.459264	AAAGUGC	ENSMUST00000140399.3|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000123362.8|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000100750.10|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000033770.13|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2
mm39_v1_chr14_-_14371476_14371577	0.458123	AAAGUGC	ENSMUST00000225653.2|Pxk|ENSMUSG00000033885.16|PX domain containing serine/threonine kinase	ENSMUST00000112689.9|Pxk|ENSMUSG00000033885.16|PX domain containing serine/threonine kinase	ENSMUST00000036682.9|Pxk|ENSMUSG00000033885.16|PX domain containing serine/threonine kinase
mm39_v1_chr9_-_66826928_66826992	0.456018	AAAGUGC	ENSMUST00000041139.9|Rab8b|ENSMUSG00000036943.10|RAB8B, member RAS oncogene family
mm39_v1_chr11_+_4207557_4207592	0.45433	AAAGUGC	ENSMUST00000066283.12|Lif|ENSMUSG00000034394.15|leukemia inhibitory factor
mm39_v1_chr4_+_134650899_134650906	0.452465	AAAGUGC	ENSMUST00000078084.7|Rsrp1|ENSMUSG00000037266.19|arginine/serine rich protein 1
mm39_v1_chr1_-_119765343_119765403	0.449822	AAAGUGC	ENSMUST00000064091.12|Ptpn4|ENSMUSG00000026384.14|protein tyrosine phosphatase, non-receptor type 4
mm39_v1_chrX_+_76554608_76554743	0.448553	AAAGUGC	ENSMUST00000088217.12|Tbl1x|ENSMUSG00000025246.14|transducin (beta)-like 1 X-linked
mm39_v1_chrX_+_150927237_150927268	0.444012	AAAGUGC	ENSMUST00000168786.8|Iqsec2|ENSMUSG00000041115.17|IQ motif and Sec7 domain 2	ENSMUST00000112605.8|Iqsec2|ENSMUSG00000041115.17|IQ motif and Sec7 domain 2	ENSMUST00000112604.8|Iqsec2|ENSMUSG00000041115.17|IQ motif and Sec7 domain 2
mm39_v1_chr12_+_4132567_4132652	0.42944	AAAGUGC	ENSMUST00000020986.15|Dnajc27|ENSMUSG00000020657.17|DnaJ heat shock protein family (Hsp40) member C27	ENSMUST00000049584.6|Dnajc27|ENSMUSG00000020657.17|DnaJ heat shock protein family (Hsp40) member C27
mm39_v1_chr3_-_133250129_133250174	0.428477	AAAGUGC	ENSMUST00000196398.5|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2	ENSMUST00000098603.8|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2
mm39_v1_chr2_+_153133326_153133378	0.425735	AAAGUGC	ENSMUST00000028977.7|Kif3b|ENSMUSG00000027475.10|kinesin family member 3B
mm39_v1_chr2_-_23462052_23462124	0.420721	AAAGUGC	ENSMUST00000132484.7|Spopl|ENSMUSG00000026771.15|speckle-type BTB/POZ protein-like
mm39_v1_chr12_+_38830081_38830116	0.416573	AAAGUGC	ENSMUST00000095767.11|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr5_-_25703700_25703841	0.413676	AAAGUGC	ENSMUST00000173073.8|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000045291.14|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000173174.2|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C
mm39_v1_chr9_-_61854050_61854061	0.410254	AAAGUGC	ENSMUST00000034815.9|Kif23|ENSMUSG00000032254.11|kinesin family member 23
mm39_v1_chr16_-_92622972_92623037	0.407795	AAAGUGC	ENSMUST00000023673.14|Runx1|ENSMUSG00000022952.18|runt related transcription factor 1
mm39_v1_chr4_+_135899678_135899738	0.406503	AAAGUGC	ENSMUST00000061721.6|E2f2|ENSMUSG00000018983.10|E2F transcription factor 2
mm39_v1_chr11_-_80670815_80670871	0.402676	AAAGUGC	ENSMUST00000041065.14|Myo1d|ENSMUSG00000035441.15|myosin ID	ENSMUST00000070997.6|Myo1d|ENSMUSG00000035441.15|myosin ID
mm39_v1_chr10_+_93983844_93983885	0.401999	AAAGUGC	ENSMUST00000105290.9|Nr2c1|ENSMUSG00000005897.15|nuclear receptor subfamily 2, group C, member 1
mm39_v1_chr2_-_34262012_34262056	0.401482	AAAGUGC	ENSMUST00000113132.9|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3	ENSMUST00000040638.15|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3
mm39_v1_chr19_+_3817396_3817523	0.397541	AAAGUGC	ENSMUST00000052699.13|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113974.11|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113972.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113973.8|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113977.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113968.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B
mm39_v1_chr2_+_116951855_116951880	0.395341	AAAGUGC	ENSMUST00000028829.13|Spred1|ENSMUSG00000027351.15|sprouty protein with EVH-1 domain 1, related sequence
mm39_v1_chr15_+_57558048_57558089	0.39298	AAAGUGC	ENSMUST00000096430.11|Zhx2|ENSMUSG00000071757.11|zinc fingers and homeoboxes 2
mm39_v1_chrX_+_52001108_52001238	0.392208	AAAGUGC	ENSMUST00000078944.13|Phf6|ENSMUSG00000025626.17|PHD finger protein 6	ENSMUST00000101587.10|Phf6|ENSMUSG00000025626.17|PHD finger protein 6	ENSMUST00000154864.4|Phf6|ENSMUSG00000025626.17|PHD finger protein 6
mm39_v1_chr6_-_99243455_99243501	0.390012	AAAGUGC	ENSMUST00000113326.9|Foxp1|ENSMUSG00000030067.18|forkhead box P1
mm39_v1_chr11_+_68989763_68989811	0.388892	AAAGUGC	ENSMUST00000021271.14|Per1|ENSMUSG00000020893.18|period circadian clock 1
mm39_v1_chr6_-_40413056_40413085	0.38603	AAAGUGC	ENSMUST00000039008.10|Dennd11|ENSMUSG00000037172.15|DENN domain containing 11	ENSMUST00000101492.10|Dennd11|ENSMUSG00000037172.15|DENN domain containing 11
mm39_v1_chr18_+_65022035_65022105	0.385915	AAAGUGC	ENSMUST00000224385.3|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like	ENSMUST00000163516.9|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr9_-_96513529_96513670	0.383524	AAAGUGC	ENSMUST00000034984.8|Rasa2|ENSMUSG00000032413.13|RAS p21 protein activator 2
mm39_v1_chr1_+_64571942_64572013	0.37566	AAAGUGC	ENSMUST00000171164.8|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000187811.7|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000049932.12|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000087366.11|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1
mm39_v1_chr10_+_94350687_94350784	0.374641	AAAGUGC	ENSMUST00000065060.12|Tmcc3|ENSMUSG00000020023.19|transmembrane and coiled coil domains 3
mm39_v1_chr15_+_101071948_101072029	0.373517	AAAGUGC	ENSMUST00000000544.12|Acvr1b|ENSMUSG00000000532.12|activin A receptor, type 1B
mm39_v1_chr8_+_91555449_91555470	0.36038	AAAGUGC	ENSMUST00000109614.9|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr18_-_73836810_73836877	0.354996	AAAGUGC	ENSMUST00000025393.14|Smad4|ENSMUSG00000024515.14|SMAD family member 4
mm39_v1_chr11_+_75570085_75570167	0.353395	AAAGUGC	ENSMUST00000017920.14|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000108426.8|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000108425.8|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000093115.4|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog
mm39_v1_chr17_+_27192135_27192193	0.352471	AAAGUGC	ENSMUST00000120016.3|Zbtb9|ENSMUSG00000079605.6|zinc finger and BTB domain containing 9
mm39_v1_chr1_+_139349912_139350120	0.351221	AAAGUGC	ENSMUST00000200243.5|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41	ENSMUST00000039867.10|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41
mm39_v1_chr3_-_57755500_57755519	0.349797	AAAGUGC	ENSMUST00000066882.10|Pfn2|ENSMUSG00000027805.17|profilin 2
mm39_v1_chr3_-_107667499_107667572	0.344526	AAAGUGC	ENSMUST00000153114.2|Csf1|ENSMUSG00000014599.11|colony stimulating factor 1 (macrophage)	ENSMUST00000118593.8|Csf1|ENSMUSG00000014599.11|colony stimulating factor 1 (macrophage)	ENSMUST00000120243.8|Csf1|ENSMUSG00000014599.11|colony stimulating factor 1 (macrophage)
mm39_v1_chr17_+_88837540_88837570	0.342435	AAAGUGC	ENSMUST00000038551.8|Ppp1r21|ENSMUSG00000034709.9|protein phosphatase 1, regulatory subunit 21
mm39_v1_chr2_-_31031814_31032029	0.341927	AAAGUGC	ENSMUST00000073879.12|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000100208.9|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000100207.9|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000113555.8|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000075326.11|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000113552.9|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000136181.8|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000113564.9|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000113562.9|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000113560.8|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1
mm39_v1_chr12_+_81678143_81678169	0.337883	AAAGUGC	ENSMUST00000036116.6|Ttc9|ENSMUSG00000042734.7|tetratricopeptide repeat domain 9
mm39_v1_chr6_+_92068361_92068371	0.337409	AAAGUGC	ENSMUST00000113460.8|Nr2c2|ENSMUSG00000005893.15|nuclear receptor subfamily 2, group C, member 2
mm39_v1_chr18_-_38734389_38734468	0.33649	AAAGUGC	ENSMUST00000025295.8|Spry4|ENSMUSG00000024427.8|sprouty RTK signaling antagonist 4
mm39_v1_chr1_-_152642032_152642069	0.33113	AAAGUGC	ENSMUST00000111859.8|Rgl1|ENSMUSG00000026482.14|ral guanine nucleotide dissociation stimulator,-like 1
mm39_v1_chrX_+_67864699_67864699	0.330091	AAAGUGC	ENSMUST00000096420.3|Gm14698|ENSMUSG00000071748.3|predicted gene 14698
mm39_v1_chr5_-_96309849_96309956	0.324423	AAAGUGC	ENSMUST00000155901.8|Cnot6l|ENSMUSG00000034724.19|CCR4-NOT transcription complex, subunit 6-like
mm39_v1_chr12_-_85386120_85386169	0.319115	AAAGUGC	ENSMUST00000040992.8|Nek9|ENSMUSG00000034290.10|NIMA (never in mitosis gene a)-related expressed kinase 9
mm39_v1_chr14_-_67309866_67309925	0.317798	AAAGUGC	ENSMUST00000225380.2|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha	ENSMUST00000089230.7|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha
mm39_v1_chr1_-_43137768_43137847	0.311787	AAAGUGC	ENSMUST00000190427.7|Tgfbrap1|ENSMUSG00000070939.10|transforming growth factor, beta receptor associated protein 1	ENSMUST00000095014.8|Tgfbrap1|ENSMUSG00000070939.10|transforming growth factor, beta receptor associated protein 1
mm39_v1_chr11_-_59855762_59855777	0.31107	AAAGUGC	ENSMUST00000062405.8|Rasd1|ENSMUSG00000049892.8|RAS, dexamethasone-induced 1
mm39_v1_chr13_-_111945499_111945552	0.310287	AAAGUGC	ENSMUST00000109267.9|Map3k1|ENSMUSG00000021754.18|mitogen-activated protein kinase kinase kinase 1
mm39_v1_chr8_-_127320685_127320736	0.307821	AAAGUGC	ENSMUST00000054960.9|Irf2bp2|ENSMUSG00000051495.9|interferon regulatory factor 2 binding protein 2
mm39_v1_chr7_+_79836581_79836651	0.307061	AAAGUGC	ENSMUST00000032754.9|Sema4b|ENSMUSG00000030539.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm39_v1_chr11_+_95603494_95603529	0.30546	AAAGUGC	ENSMUST00000107717.8|Zfp652|ENSMUSG00000075595.10|zinc finger protein 652
mm39_v1_chr10_-_76181089_76181205	0.303864	AAAGUGC	ENSMUST00000036033.14|Dip2a|ENSMUSG00000020231.16|disco interacting protein 2 homolog A	ENSMUST00000160048.8|Dip2a|ENSMUSG00000020231.16|disco interacting protein 2 homolog A	ENSMUST00000105417.10|Dip2a|ENSMUSG00000020231.16|disco interacting protein 2 homolog A
mm39_v1_chr2_-_119308094_119308186	0.296848	AAAGUGC	ENSMUST00000110808.2|Ino80|ENSMUSG00000034154.16|INO80 complex subunit	ENSMUST00000049920.14|Ino80|ENSMUSG00000034154.16|INO80 complex subunit
mm39_v1_chr1_+_156386414_156386619	0.295437	AAAGUGC	ENSMUST00000166172.9|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	ENSMUST00000027888.13|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm39_v1_chr7_-_130121191_130121310	0.291719	AAAGUGC	ENSMUST00000216011.2|Ate1|ENSMUSG00000030850.18|arginyltransferase 1	ENSMUST00000035458.15|Ate1|ENSMUSG00000030850.18|arginyltransferase 1	ENSMUST00000033139.15|Ate1|ENSMUSG00000030850.18|arginyltransferase 1
mm39_v1_chr16_-_85698679_85698716	0.291019	AAAGUGC	ENSMUST00000023611.7|Adamts5|ENSMUSG00000022894.7|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm39_v1_chr9_-_123680927_123680974	0.288673	AAAGUGC	ENSMUST00000184082.3|Fyco1|ENSMUSG00000025241.17|FYVE and coiled-coil domain containing 1	ENSMUST00000167595.9|Fyco1|ENSMUSG00000025241.17|FYVE and coiled-coil domain containing 1
mm39_v1_chr14_-_73563212_73563276	0.288316	AAAGUGC	ENSMUST00000022701.7|Rb1|ENSMUSG00000022105.7|RB transcriptional corepressor 1
mm39_v1_chr8_+_85428059_85428173	0.282992	AAAGUGC	ENSMUST00000238364.2|Lyl1|ENSMUSG00000034041.6|lymphoblastomic leukemia 1	ENSMUST00000238562.2|Lyl1|ENSMUSG00000034041.6|lymphoblastomic leukemia 1	ENSMUST00000037165.6|Lyl1|ENSMUSG00000034041.6|lymphoblastomic leukemia 1
mm39_v1_chr3_+_57643477_57643549	0.278985	AAAGUGC	ENSMUST00000041826.14|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000198510.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000200497.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000198214.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000200600.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000198249.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000199041.2|Rnf13|ENSMUSG00000036503.14|ring finger protein 13
mm39_v1_chr2_-_33358513_33358582	0.27514	AAAGUGC	ENSMUST00000113156.2|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43	ENSMUST00000028125.12|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43	ENSMUST00000126442.2|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43
mm39_v1_chr1_-_163141230_163141246	0.274944	AAAGUGC	ENSMUST00000174397.3|Prrx1|ENSMUSG00000026586.17|paired related homeobox 1	ENSMUST00000075805.13|Prrx1|ENSMUSG00000026586.17|paired related homeobox 1
mm39_v1_chr19_-_14575395_14575451	0.274371	AAAGUGC	ENSMUST00000052011.15|Tle4|ENSMUSG00000024642.18|transducin-like enhancer of split 4	ENSMUST00000167776.3|Tle4|ENSMUSG00000024642.18|transducin-like enhancer of split 4
mm39_v1_chr9_-_13738304_13738425	0.270062	AAAGUGC	ENSMUST00000148086.8|Cep57|ENSMUSG00000031922.13|centrosomal protein 57	ENSMUST00000034398.12|Cep57|ENSMUSG00000031922.13|centrosomal protein 57
mm39_v1_chr9_-_42383494_42383561	0.269333	AAAGUGC	ENSMUST00000128959.8|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like	ENSMUST00000066148.12|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like	ENSMUST00000138506.8|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like
mm39_v1_chr11_-_50183129_50183191	0.266114	AAAGUGC	ENSMUST00000059458.5|Maml1|ENSMUSG00000050567.17|mastermind like transcriptional coactivator 1
mm39_v1_chr12_-_21467437_21467638	0.264064	AAAGUGC	ENSMUST00000103002.8|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	ENSMUST00000155480.9|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	ENSMUST00000135088.9|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta
mm39_v1_chr4_+_3678108_3678134	0.256145	AAAGUGC	ENSMUST00000041377.13|Lyn|ENSMUSG00000042228.15|LYN proto-oncogene, Src family tyrosine kinase	ENSMUST00000103010.4|Lyn|ENSMUSG00000042228.15|LYN proto-oncogene, Src family tyrosine kinase
mm39_v1_chr7_+_122723365_122723446	0.255766	AAAGUGC	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr5_+_122845607_122845623	0.245349	AAAGUGC	ENSMUST00000031429.14|P2rx4|ENSMUSG00000029470.16|purinergic receptor P2X, ligand-gated ion channel 4
mm39_v1_chr5_+_139366336_139366463	0.243215	AAAGUGC	ENSMUST00000051293.8|Gpr146|ENSMUSG00000044197.9|G protein-coupled receptor 146
mm39_v1_chr4_+_136197066_136197161	0.242053	AAAGUGC	ENSMUST00000170102.8|Luzp1|ENSMUSG00000001089.15|leucine zipper protein 1	ENSMUST00000105849.9|Luzp1|ENSMUSG00000001089.15|leucine zipper protein 1	ENSMUST00000129230.3|Luzp1|ENSMUSG00000001089.15|leucine zipper protein 1
mm39_v1_chr4_-_128699838_128699966	0.241784	AAAGUGC	ENSMUST00000106072.9|Zfp362|ENSMUSG00000028799.16|zinc finger protein 362	ENSMUST00000170934.3|Zfp362|ENSMUSG00000028799.16|zinc finger protein 362
mm39_v1_chr1_+_93406686_93406783	0.240324	AAAGUGC	ENSMUST00000027495.15|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000136182.8|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000131175.9|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000179353.8|Septin2|ENSMUSG00000116048.2|septin 2	ENSMUST00000172165.8|Septin2|ENSMUSG00000116048.2|septin 2	ENSMUST00000153826.8|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000129211.8|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000168776.8|Septin2|ENSMUSG00000116048.2|septin 2
mm39_v1_chr11_-_69838971_69839034	0.24016	AAAGUGC	ENSMUST00000179298.3|Slc2a4|ENSMUSG00000018566.15|solute carrier family 2 (facilitated glucose transporter), member 4	ENSMUST00000018710.13|Slc2a4|ENSMUSG00000018566.15|solute carrier family 2 (facilitated glucose transporter), member 4	ENSMUST00000135437.3|Slc2a4|ENSMUSG00000018566.15|solute carrier family 2 (facilitated glucose transporter), member 4	ENSMUST00000141837.9|Slc2a4|ENSMUSG00000018566.15|solute carrier family 2 (facilitated glucose transporter), member 4	ENSMUST00000142500.8|Slc2a4|ENSMUSG00000018566.15|solute carrier family 2 (facilitated glucose transporter), member 4
mm39_v1_chr10_+_79984097_79984115	0.236749	AAAGUGC	ENSMUST00000099492.10|Midn|ENSMUSG00000035621.14|midnolin	ENSMUST00000042057.12|Midn|ENSMUSG00000035621.14|midnolin
mm39_v1_chr6_+_136495784_136495808	0.23622	AAAGUGC	ENSMUST00000032335.13|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein	ENSMUST00000185724.7|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr15_+_32244947_32244982	0.233678	AAAGUGC	ENSMUST00000067458.7|Sema5a|ENSMUSG00000022231.11|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
mm39_v1_chr9_-_66500404_66500424	0.229903	AAAGUGC	ENSMUST00000127569.8|Usp3|ENSMUSG00000032376.13|ubiquitin specific peptidase 3
mm39_v1_chr19_+_46140942_46140953	0.227722	AAAGUGC	ENSMUST00000026254.14|Gbf1|ENSMUSG00000025224.17|golgi-specific brefeldin A-resistance factor 1
mm39_v1_chr11_+_60428788_60428810	0.226078	AAAGUGC	ENSMUST00000044250.4|Alkbh5|ENSMUSG00000042650.4|alkB homolog 5, RNA demethylase
mm39_v1_chr9_+_21336198_21336272	0.221743	AAAGUGC	ENSMUST00000165766.9|Dnm2|ENSMUSG00000033335.18|dynamin 2	ENSMUST00000173397.8|Dnm2|ENSMUSG00000033335.18|dynamin 2	ENSMUST00000072362.14|Dnm2|ENSMUSG00000033335.18|dynamin 2	ENSMUST00000091087.13|Dnm2|ENSMUSG00000033335.18|dynamin 2	ENSMUST00000115404.11|Dnm2|ENSMUSG00000033335.18|dynamin 2
mm39_v1_chr11_+_4186391_4186435	0.221678	AAAGUGC	ENSMUST00000075221.3|Osm|ENSMUSG00000058755.4|oncostatin M
mm39_v1_chrX_-_47543029_47543071	0.218786	AAAGUGC	ENSMUST00000114958.8|Elf4|ENSMUSG00000031103.13|E74-like factor 4 (ets domain transcription factor)
mm39_v1_chr6_+_122285615_122285679	0.216898	AAAGUGC	ENSMUST00000007602.15|M6pr|ENSMUSG00000007458.15|mannose-6-phosphate receptor, cation dependent	ENSMUST00000112610.2|M6pr|ENSMUSG00000007458.15|mannose-6-phosphate receptor, cation dependent
mm39_v1_chr8_-_86567506_86567585	0.216188	AAAGUGC	ENSMUST00000034140.9|Itfg1|ENSMUSG00000031703.9|integrin alpha FG-GAP repeat containing 1
mm39_v1_chr19_+_23118545_23118627	0.215977	AAAGUGC	ENSMUST00000036884.3|Klf9|ENSMUSG00000033863.3|Kruppel-like factor 9
mm39_v1_chr2_+_121786444_121786498	0.198989	AAAGUGC	ENSMUST00000036647.13|Ctdspl2|ENSMUSG00000033411.17|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm39_v1_chr13_-_101904662_101904725	0.196858	AAAGUGC	ENSMUST00000055518.13|Pik3r1|ENSMUSG00000041417.16|phosphoinositide-3-kinase regulatory subunit 1
mm39_v1_chr8_-_35962641_35962700	0.19663	AAAGUGC	ENSMUST00000033927.8|Eri1|ENSMUSG00000031527.8|exoribonuclease 1
mm39_v1_chr4_-_81360993_81361073	0.19569	AAAGUGC	ENSMUST00000107262.8|Mpdz|ENSMUSG00000028402.19|multiple PDZ domain crumbs cell polarity complex component	ENSMUST00000102830.10|Mpdz|ENSMUSG00000028402.19|multiple PDZ domain crumbs cell polarity complex component
mm39_v1_chr2_-_157046386_157046461	0.194924	AAAGUGC	ENSMUST00000029170.8|Rbl1|ENSMUSG00000027641.14|RB transcriptional corepressor like 1
mm39_v1_chr8_+_105951777_105951827	0.188314	AAAGUGC	ENSMUST00000034361.10|D230025D16Rik|ENSMUSG00000031889.10|RIKEN cDNA D230025D16 gene
mm39_v1_chr4_-_129534853_129534873	0.188311	AAAGUGC	ENSMUST00000046425.16|Txlna|ENSMUSG00000053841.16|taxilin alpha	ENSMUST00000133803.8|Txlna|ENSMUSG00000053841.16|taxilin alpha
mm39_v1_chr10_-_81262948_81263021	0.187014	AAAGUGC	ENSMUST00000078185.14|Nfic|ENSMUSG00000055053.19|nuclear factor I/C	ENSMUST00000020461.15|Nfic|ENSMUSG00000055053.19|nuclear factor I/C	ENSMUST00000105321.10|Nfic|ENSMUSG00000055053.19|nuclear factor I/C
mm39_v1_chr16_+_27207599_27207619	0.186265	AAAGUGC	ENSMUST00000239351.2|Ccdc50|ENSMUSG00000038127.16|coiled-coil domain containing 50	ENSMUST00000100026.10|Ccdc50|ENSMUSG00000038127.16|coiled-coil domain containing 50
mm39_v1_chr4_+_28813125_28813139	0.184046	AAAGUGC	ENSMUST00000080934.11|Epha7|ENSMUSG00000028289.13|Eph receptor A7	ENSMUST00000029964.12|Epha7|ENSMUSG00000028289.13|Eph receptor A7
mm39_v1_chr7_-_98305737_98305808	0.182738	AAAGUGC	ENSMUST00000205911.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000038359.6|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000206611.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000206619.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor
mm39_v1_chr12_+_3476857_3476925	0.176026	AAAGUGC	ENSMUST00000111215.10|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000092003.12|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000144247.9|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000153102.9|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2
mm39_v1_chr1_+_191638854_191638879	0.175651	AAAGUGC	ENSMUST00000044954.7|Slc30a1|ENSMUSG00000037434.8|solute carrier family 30 (zinc transporter), member 1
mm39_v1_chr9_+_57615816_57615891	0.174245	AAAGUGC	ENSMUST00000043990.14|Edc3|ENSMUSG00000038957.14|enhancer of mRNA decapping 3	ENSMUST00000142807.2|Edc3|ENSMUSG00000038957.14|enhancer of mRNA decapping 3
mm39_v1_chr4_-_57301791_57301837	0.174228	AAAGUGC	ENSMUST00000075637.11|Ptpn3|ENSMUSG00000038764.15|protein tyrosine phosphatase, non-receptor type 3
mm39_v1_chr12_+_16944896_16944904	0.174086	AAAGUGC	ENSMUST00000020904.8|Rock2|ENSMUSG00000020580.11|Rho-associated coiled-coil containing protein kinase 2
mm39_v1_chr5_+_64960705_64960731	0.173044	AAAGUGC	ENSMUST00000165536.8|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr5_-_74229021_74229099	0.169618	AAAGUGC	ENSMUST00000119154.8|Usp46|ENSMUSG00000054814.15|ubiquitin specific peptidase 46	ENSMUST00000068058.14|Usp46|ENSMUSG00000054814.15|ubiquitin specific peptidase 46
mm39_v1_chr5_+_31398208_31398285	0.168977	AAAGUGC	ENSMUST00000202576.4|Nrbp1|ENSMUSG00000029148.16|nuclear receptor binding protein 1	ENSMUST00000031034.12|Nrbp1|ENSMUSG00000029148.16|nuclear receptor binding protein 1	ENSMUST00000202842.4|Nrbp1|ENSMUSG00000029148.16|nuclear receptor binding protein 1	ENSMUST00000201259.4|Nrbp1|ENSMUSG00000029148.16|nuclear receptor binding protein 1	ENSMUST00000202505.2|Nrbp1|ENSMUSG00000029148.16|nuclear receptor binding protein 1
mm39_v1_chr11_+_77107006_77107113	0.168318	AAAGUGC	ENSMUST00000156488.8|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2	ENSMUST00000037912.12|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2
mm39_v1_chr7_-_115837034_115837056	0.159339	AAAGUGC	ENSMUST00000182834.8|Plekha7|ENSMUSG00000045659.19|pleckstrin homology domain containing, family A member 7
mm39_v1_chr11_+_70453806_70453896	0.159308	AAAGUGC	ENSMUST00000079244.12|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)	ENSMUST00000102558.11|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)
mm39_v1_chr6_+_96090127_96090153	0.158696	AAAGUGC	ENSMUST00000122120.8|Tafa1|ENSMUSG00000059187.13|TAFA chemokine like family member 1
mm39_v1_chr5_-_102217770_102217807	0.156233	AAAGUGC	ENSMUST00000053177.14|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3	ENSMUST00000174698.2|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3
mm39_v1_chr7_-_30288142_30288182	0.154443	AAAGUGC	ENSMUST00000006470.14|Kmt2b|ENSMUSG00000006307.17|lysine (K)-specific methyltransferase 2B	ENSMUST00000108154.9|Kmt2b|ENSMUSG00000006307.17|lysine (K)-specific methyltransferase 2B
mm39_v1_chr4_-_126362372_126362446	0.153077	AAAGUGC	ENSMUST00000097888.10|Ago1|ENSMUSG00000041530.18|argonaute RISC catalytic subunit 1	ENSMUST00000239399.2|Ago1|ENSMUSG00000041530.18|argonaute RISC catalytic subunit 1
mm39_v1_chr1_+_133173826_133173844	0.152212	AAAGUGC	ENSMUST00000105082.9|Plekha6|ENSMUSG00000041757.18|pleckstrin homology domain containing, family A member 6	ENSMUST00000038295.15|Plekha6|ENSMUSG00000041757.18|pleckstrin homology domain containing, family A member 6
mm39_v1_chr15_-_38079089_38079100	0.151386	AAAGUGC	ENSMUST00000110336.4|Ubr5|ENSMUSG00000037487.8|ubiquitin protein ligase E3 component n-recognin 5
mm39_v1_chr19_+_29388312_29388348	0.149487	AAAGUGC	ENSMUST00000112576.4|Pdcd1lg2|ENSMUSG00000016498.11|programmed cell death 1 ligand 2
mm39_v1_chr9_-_15191218_15191227	0.146653	AAAGUGC	ENSMUST00000034411.10|Med17|ENSMUSG00000031935.10|mediator complex subunit 17
mm39_v1_chr2_+_19662529_19662616	0.143101	AAAGUGC	ENSMUST00000052168.6|Otud1|ENSMUSG00000043415.6|OTU domain containing 1
mm39_v1_chr1_+_34840785_34840875	0.142095	AAAGUGC	ENSMUST00000047664.16|Arhgef4|ENSMUSG00000037509.22|Rho guanine nucleotide exchange factor (GEF) 4	ENSMUST00000211073.2|SMIM39|ENSMUSG00000118272.2|novel protein
mm39_v1_chrX_+_47001264_47001344	0.141929	AAAGUGC	ENSMUST00000001202.15|Ocrl|ENSMUSG00000001173.16|OCRL, inositol polyphosphate-5-phosphatase	ENSMUST00000115020.8|Ocrl|ENSMUSG00000001173.16|OCRL, inositol polyphosphate-5-phosphatase
mm39_v1_chr3_+_98289755_98289836	0.140067	AAAGUGC	ENSMUST00000056096.15|Zfp697|ENSMUSG00000050064.15|zinc finger protein 697
mm39_v1_chrX_+_97192356_97192388	0.135137	AAAGUGC	ENSMUST00000052837.9|Ar|ENSMUSG00000046532.9|androgen receptor
mm39_v1_chr18_+_58792514_58792590	0.132136	AAAGUGC	ENSMUST00000025503.10|Isoc1|ENSMUSG00000024601.10|isochorismatase domain containing 1	ENSMUST00000238139.2|Isoc1|ENSMUSG00000024601.10|isochorismatase domain containing 1
mm39_v1_chr11_-_68743944_68743966	0.130906	AAAGUGC	ENSMUST00000018880.14|Ndel1|ENSMUSG00000018736.15|nudE neurodevelopment protein 1 like 1
mm39_v1_chr10_-_127047396_127047502	0.128115	AAAGUGC	ENSMUST00000013970.9|Pip4k2c|ENSMUSG00000025417.9|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
mm39_v1_chr2_+_76505619_76505630	0.127812	AAAGUGC	ENSMUST00000111920.2|Plekha3|ENSMUSG00000002733.9|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm39_v1_chr3_+_16237371_16237447	0.123991	AAAGUGC	ENSMUST00000108345.9|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000191774.6|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000108346.5|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3
mm39_v1_chr4_+_119396849_119396912	0.121871	AAAGUGC	ENSMUST00000044564.15|Foxj3|ENSMUSG00000032998.17|forkhead box J3	ENSMUST00000162267.8|Foxj3|ENSMUSG00000032998.17|forkhead box J3	ENSMUST00000106310.9|Foxj3|ENSMUSG00000032998.17|forkhead box J3	ENSMUST00000138845.9|Foxj3|ENSMUSG00000032998.17|forkhead box J3
mm39_v1_chr1_+_178626003_178626032	0.120464	AAAGUGC	ENSMUST00000160789.2|Kif26b|ENSMUSG00000026494.13|kinesin family member 26B
mm39_v1_chr2_+_154975419_154975479	0.118157	AAAGUGC	ENSMUST00000029126.15|Itch|ENSMUSG00000027598.17|itchy, E3 ubiquitin protein ligase	ENSMUST00000109685.8|Itch|ENSMUSG00000027598.17|itchy, E3 ubiquitin protein ligase
mm39_v1_chr4_-_14826587_14826606	0.115449	AAAGUGC	ENSMUST00000117268.9|Otud6b|ENSMUSG00000040550.18|OTU domain containing 6B	ENSMUST00000236953.2|Otud6b|ENSMUSG00000040550.18|OTU domain containing 6B
mm39_v1_chr19_+_40819682_40819757	0.115136	AAAGUGC	ENSMUST00000025983.13|Ccnj|ENSMUSG00000025010.15|cyclin J	ENSMUST00000119316.2|Ccnj|ENSMUSG00000025010.15|cyclin J
mm39_v1_chr11_-_76654375_76654419	0.114391	AAAGUGC	ENSMUST00000010536.9|Gosr1|ENSMUSG00000010392.9|golgi SNAP receptor complex member 1
mm39_v1_chr11_+_77576981_77577005	0.11382	AAAGUGC	ENSMUST00000100802.11|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2	ENSMUST00000181023.2|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2
mm39_v1_chr2_+_164627743_164627911	0.109794	AAAGUGC	ENSMUST00000174070.8|Snx21|ENSMUSG00000050373.14|sorting nexin family member 21	ENSMUST00000172577.8|Snx21|ENSMUSG00000050373.14|sorting nexin family member 21	ENSMUST00000056181.7|Snx21|ENSMUSG00000050373.14|sorting nexin family member 21
mm39_v1_chr12_+_85335365_85335486	0.107075	AAAGUGC	ENSMUST00000059341.5|Zc2hc1c|ENSMUSG00000045064.6|zinc finger, C2HC-type containing 1C
mm39_v1_chr2_-_127634387_127634425	0.105376	AAAGUGC	ENSMUST00000135091.2|Mtln|ENSMUSG00000051319.7|mitoregulin
mm39_v1_chr6_-_94677118_94677157	0.102035	AAAGUGC	ENSMUST00000101126.3|Lrig1|ENSMUSG00000030029.15|leucine-rich repeats and immunoglobulin-like domains 1	ENSMUST00000032105.11|Lrig1|ENSMUSG00000030029.15|leucine-rich repeats and immunoglobulin-like domains 1
mm39_v1_chr16_-_23807602_23807602	0.100664	AAAGUGC	ENSMUST00000023151.6|Bcl6|ENSMUSG00000022508.6|B cell leukemia/lymphoma 6
mm39_v1_chr8_+_125739724_125739745	0.0974244	AAAGUGC	ENSMUST00000075896.7|Tsnax|ENSMUSG00000056820.8|translin-associated factor X
mm39_v1_chr18_-_88912446_88912497	0.0926049	AAAGUGC	ENSMUST00000070116.12|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6	ENSMUST00000125362.8|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6
mm39_v1_chr2_+_30842966_30843028	0.0924554	AAAGUGC	ENSMUST00000028199.12|Tor1b|ENSMUSG00000026848.15|torsin family 1, member B
mm39_v1_chr7_-_19192672_19192782	0.0917899	AAAGUGC	ENSMUST00000239292.2|Mark4|ENSMUSG00000030397.12|MAP/microtubule affinity regulating kinase 4	ENSMUST00000085715.7|Mark4|ENSMUSG00000030397.12|MAP/microtubule affinity regulating kinase 4
mm39_v1_chr6_-_84570890_84570903	0.0913095	AAAGUGC	ENSMUST00000168003.9|Cyp26b1|ENSMUSG00000063415.13|cytochrome P450, family 26, subfamily b, polypeptide 1
mm39_v1_chr10_-_80578057_80578113	0.0890615	AAAGUGC	ENSMUST00000020420.9|Ap3d1|ENSMUSG00000020198.9|adaptor-related protein complex 3, delta 1 subunit
mm39_v1_chr3_+_14643669_14643756	0.0867426	AAAGUGC	ENSMUST00000029069.13|E2f5|ENSMUSG00000027552.15|E2F transcription factor 5	ENSMUST00000165922.3|E2f5|ENSMUSG00000027552.15|E2F transcription factor 5
mm39_v1_chr11_+_115921129_115921215	0.0798785	AAAGUGC	ENSMUST00000021116.12|Unk|ENSMUSG00000020770.14|unkempt family zinc finger	ENSMUST00000106452.2|Unk|ENSMUSG00000020770.14|unkempt family zinc finger
mm39_v1_chr14_-_105414294_105414361	0.0780697	AAAGUGC	ENSMUST00000163545.8|Rbm26|ENSMUSG00000022119.16|RNA binding motif protein 26
mm39_v1_chr6_+_38410848_38410901	0.0776457	AAAGUGC	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr9_+_57444801_57444860	0.0771421	AAAGUGC	ENSMUST00000093833.6|Fam219b|ENSMUSG00000032305.16|family with sequence similarity 219, member B	ENSMUST00000114200.10|Fam219b|ENSMUSG00000032305.16|family with sequence similarity 219, member B
mm39_v1_chr8_-_71249630_71249662	0.0729188	AAAGUGC	ENSMUST00000166004.3|Mast3|ENSMUSG00000031833.11|microtubule associated serine/threonine kinase 3
mm39_v1_chr12_+_84498196_84498292	0.072822	AAAGUGC	ENSMUST00000137170.3|Lin52|ENSMUSG00000085793.3|lin-52 homolog (C. elegans)
mm39_v1_chr8_+_127025265_127025343	0.0684442	AAAGUGC	ENSMUST00000108759.3|Slc35f3|ENSMUSG00000057060.9|solute carrier family 35, member F3
mm39_v1_chr5_-_43939405_43939492	0.0682433	AAAGUGC	ENSMUST00000199055.2|Fbxl5|ENSMUSG00000039753.17|F-box and leucine-rich repeat protein 5	ENSMUST00000124610.6|Fbxl5|ENSMUSG00000039753.17|F-box and leucine-rich repeat protein 5	ENSMUST00000196483.5|Fbxl5|ENSMUSG00000039753.17|F-box and leucine-rich repeat protein 5	ENSMUST00000087465.11|Fbxl5|ENSMUSG00000039753.17|F-box and leucine-rich repeat protein 5	ENSMUST00000121736.6|Fbxl5|ENSMUSG00000039753.17|F-box and leucine-rich repeat protein 5	ENSMUST00000119523.8|Fbxl5|ENSMUSG00000039753.17|F-box and leucine-rich repeat protein 5	ENSMUST00000047857.16|Fbxl5|ENSMUSG00000039753.17|F-box and leucine-rich repeat protein 5
mm39_v1_chr10_-_7656635_7656687	0.067713	AAAGUGC	ENSMUST00000124838.2|Ginm1|ENSMUSG00000040006.14|glycoprotein integral membrane 1	ENSMUST00000039763.14|Ginm1|ENSMUSG00000040006.14|glycoprotein integral membrane 1
mm39_v1_chr19_-_45771939_45772000	0.0648815	AAAGUGC	ENSMUST00000026243.5|Oga|ENSMUSG00000025220.9|O-GlcNAcase
mm39_v1_chr2_+_49956441_49956481	0.064503	AAAGUGC	ENSMUST00000112712.10|Lypd6|ENSMUSG00000050447.16|LY6/PLAUR domain containing 6	ENSMUST00000128451.8|Lypd6|ENSMUSG00000050447.16|LY6/PLAUR domain containing 6	ENSMUST00000053208.14|Lypd6|ENSMUSG00000050447.16|LY6/PLAUR domain containing 6
mm39_v1_chr14_-_103336990_103337007	0.0639795	AAAGUGC	ENSMUST00000022720.15|Fbxl3|ENSMUSG00000022124.16|F-box and leucine-rich repeat protein 3	ENSMUST00000144141.8|Fbxl3|ENSMUSG00000022124.16|F-box and leucine-rich repeat protein 3
mm39_v1_chr9_+_69896748_69896821	0.0626973	AAAGUGC	ENSMUST00000034754.12|Bnip2|ENSMUSG00000011958.18|BCL2/adenovirus E1B interacting protein 2	ENSMUST00000085393.13|Bnip2|ENSMUSG00000011958.18|BCL2/adenovirus E1B interacting protein 2	ENSMUST00000117450.8|Bnip2|ENSMUSG00000011958.18|BCL2/adenovirus E1B interacting protein 2
mm39_v1_chr9_+_110361561_110361669	0.0623678	AAAGUGC	ENSMUST00000153838.8|Setd2|ENSMUSG00000044791.17|SET domain containing 2
mm39_v1_chr16_-_16377982_16378114	0.0623185	AAAGUGC	ENSMUST00000161861.8|Fgd4|ENSMUSG00000022788.17|FYVE, RhoGEF and PH domain containing 4
mm39_v1_chr4_-_40269778_40269850	0.06199	AAAGUGC	ENSMUST00000042575.7|Topors|ENSMUSG00000036822.7|topoisomerase I binding, arginine/serine-rich
mm39_v1_chr4_-_108637979_108638000	0.0612523	AAAGUGC	ENSMUST00000106657.8|Zfyve9|ENSMUSG00000034557.15|zinc finger, FYVE domain containing 9
mm39_v1_chr8_+_112263255_112263272	0.0604605	AAAGUGC	ENSMUST00000171182.8|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1	ENSMUST00000168428.8|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1
mm39_v1_chr15_+_100513230_100513230	0.0578896	AAAGUGC	ENSMUST00000000356.10|Dazap2|ENSMUSG00000000346.10|DAZ associated protein 2
mm39_v1_chr3_+_95566082_95566168	0.0537942	AAAGUGC	ENSMUST00000037947.15|Mcl1|ENSMUSG00000038612.17|myeloid cell leukemia sequence 1	ENSMUST00000178686.2|Mcl1|ENSMUSG00000038612.17|myeloid cell leukemia sequence 1
mm39_v1_chr9_+_65816206_65816302	0.0516731	AAAGUGC	ENSMUST00000205379.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000206048.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000034949.10|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000154589.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1
mm39_v1_chr15_-_81742686_81742741	0.0514014	AAAGUGC	ENSMUST00000050467.9|Tob2|ENSMUSG00000048546.9|transducer of ERBB2, 2	ENSMUST00000231000.2|Tob2|ENSMUSG00000048546.9|transducer of ERBB2, 2
mm39_v1_chr18_+_74575567_74575608	0.0490141	AAAGUGC	ENSMUST00000074157.13|Myo5b|ENSMUSG00000025885.19|myosin VB
mm39_v1_chr2_+_152135748_152135781	0.0437453	AAAGUGC	ENSMUST00000028963.14|Tbc1d20|ENSMUSG00000027465.14|TBC1 domain family, member 20	ENSMUST00000144252.8|Tbc1d20|ENSMUSG00000027465.14|TBC1 domain family, member 20
mm39_v1_chr1_+_59521583_59521583	0.0429866	AAAGUGC	ENSMUST00000114246.4|Fzd7|ENSMUSG00000041075.9|frizzled class receptor 7
mm39_v1_chr6_-_51446752_51446834	0.0415417	AAAGUGC	ENSMUST00000204188.3|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000203220.3|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000114459.8|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000090002.10|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1
mm39_v1_chr14_-_70837253_70837327	0.0350643	AAAGUGC	ENSMUST00000022690.10|Fam160b2|ENSMUSG00000022095.10|family with sequence similarity 160, member B2
mm39_v1_chr12_+_105750952_105751131	0.0344505	AAAGUGC	ENSMUST00000109901.9|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000168186.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000163473.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000170540.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000166735.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000170002.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha
mm39_v1_chr17_-_52139693_52139706	0.0328381	AAAGUGC	ENSMUST00000144331.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr5_+_29774205_29774265	0.032347	AAAGUGC	ENSMUST00000049453.9|Ube3c|ENSMUSG00000039000.9|ubiquitin protein ligase E3C
mm39_v1_chrX_-_161426624_161426661	0.0238063	AAAGUGC	ENSMUST00000112334.8|Reps2|ENSMUSG00000040855.16|RALBP1 associated Eps domain containing protein 2
mm39_v1_chr1_-_93233572_93233637	0.0224373	AAAGUGC	ENSMUST00000112944.8|Mterf4|ENSMUSG00000026273.14|mitochondrial transcription termination factor 4	ENSMUST00000112942.2|Mterf4|ENSMUSG00000026273.14|mitochondrial transcription termination factor 4	ENSMUST00000027492.14|Mterf4|ENSMUSG00000026273.14|mitochondrial transcription termination factor 4
mm39_v1_chr5_-_146158235_146158365	0.0211537	AAAGUGC	ENSMUST00000161859.8|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6
mm39_v1_chr13_+_14238361_14238407	0.0208671	AAAGUGC	ENSMUST00000129488.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110536.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110534.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000039538.15|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110533.2|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)
mm39_v1_chr15_-_93173032_93173060	0.0138462	AAAGUGC	ENSMUST00000057896.5|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000049484.13|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000230063.2|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1
mm39_v1_chr5_-_134668152_134668344	0.0135149	AAAGUGC	ENSMUST00000036125.10|Eif4h|ENSMUSG00000040731.14|eukaryotic translation initiation factor 4H	ENSMUST00000202622.4|Eif4h|ENSMUSG00000040731.14|eukaryotic translation initiation factor 4H
mm39_v1_chr8_+_46616688_46616767	0.0123495	AAAGUGC	ENSMUST00000034048.13|Cfap97|ENSMUSG00000031631.16|cilia and flagella associated protein 97	ENSMUST00000145229.2|Cfap97|ENSMUSG00000031631.16|cilia and flagella associated protein 97
mm39_v1_chr6_-_83418656_83418666	0.0115921	AAAGUGC	ENSMUST00000089622.11|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
mm39_v1_chr11_-_49603501_49603555	0.0114742	AAAGUGC	ENSMUST00000020624.7|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6	ENSMUST00000145353.8|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6
mm39_v1_chr2_-_37537224_37537297	0.0101058	AAAGUGC	ENSMUST00000028279.10|Strbp|ENSMUSG00000026915.17|spermatid perinuclear RNA binding protein
mm39_v1_chr2_-_52314837_52314928	0.00788881	AAAGUGC	ENSMUST00000036541.8|Arl5a|ENSMUSG00000036093.8|ADP-ribosylation factor-like 5A
mm39_v1_chr11_+_98754434_98754472	0.00457779	AAAGUGC	ENSMUST00000142414.8|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2	ENSMUST00000037480.9|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2
mm39_v1_chr11_+_35660288_35660311	0.00169789	AAAGUGC	ENSMUST00000018990.8|Pank3|ENSMUSG00000018846.9|pantothenate kinase 3
mm39_v1_chr11_-_97466035_97466061	0.000940945	AAAGUGC	ENSMUST00000107596.9|Srcin1|ENSMUSG00000038453.18|SRC kinase signaling inhibitor 1	ENSMUST00000238314.2|Srcin1|ENSMUSG00000038453.18|SRC kinase signaling inhibitor 1	ENSMUST00000238597.2|Srcin1|ENSMUSG00000038453.18|SRC kinase signaling inhibitor 1	ENSMUST00000238342.2|Srcin1|ENSMUSG00000038453.18|SRC kinase signaling inhibitor 1
mm39_v1_chr5_+_77413282_77413396	0.000506472	AAAGUGC	ENSMUST00000080359.12|Rest|ENSMUSG00000029249.16|RE1-silencing transcription factor
mm39_v1_chr14_+_117163215_117163348	5.82589e-05	AAAGUGC	ENSMUST00000078849.12|Gpc6|ENSMUSG00000058571.12|glypican 6
