mm39_v1_chr9_-_53882530_53882632	3.28906	AACACUG	ENSMUST00000048409.14|Elmod1|ENSMUSG00000041986.17|ELMO/CED-12 domain containing 1
mm39_v1_chrX_+_165021897_165021909	2.92855	AACACUG	ENSMUST00000112235.8|Gpm6b|ENSMUSG00000031342.18|glycoprotein m6b
mm39_v1_chr11_-_119438569_119438585	2.6678	AACACUG	ENSMUST00000026670.5|Nptx1|ENSMUSG00000025582.5|neuronal pentraxin 1
mm39_v1_chr3_+_68375495_68375542	2.46375	AACACUG	ENSMUST00000182532.8|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr12_+_40495951_40496015	2.43994	AACACUG	ENSMUST00000037488.8|Dock4|ENSMUSG00000035954.11|dedicator of cytokinesis 4
mm39_v1_chr15_+_30172716_30172748	2.40172	AACACUG	ENSMUST00000081728.7|Ctnnd2|ENSMUSG00000022240.11|catenin (cadherin associated protein), delta 2
mm39_v1_chr11_+_68582731_68582741	2.26967	AACACUG	ENSMUST00000102611.10|Myh10|ENSMUSG00000020900.16|myosin, heavy polypeptide 10, non-muscle
mm39_v1_chr19_+_56710570_56710631	2.14713	AACACUG	ENSMUST00000038949.6|Adrb1|ENSMUSG00000035283.6|adrenergic receptor, beta 1
mm39_v1_chr9_+_113641615_113641685	1.9835	AACACUG	ENSMUST00000111838.10|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000166734.10|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000214522.2|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000163895.3|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2
mm39_v1_chr4_+_152270510_152270591	1.97662	AACACUG	ENSMUST00000167926.8|Acot7|ENSMUSG00000028937.15|acyl-CoA thioesterase 7
mm39_v1_chr4_-_126150066_126150163	1.95472	AACACUG	ENSMUST00000122129.8|Map7d1|ENSMUSG00000028849.18|MAP7 domain containing 1	ENSMUST00000061143.15|Map7d1|ENSMUSG00000028849.18|MAP7 domain containing 1	ENSMUST00000106132.3|Map7d1|ENSMUSG00000028849.18|MAP7 domain containing 1
mm39_v1_chr12_+_117480099_117480148	1.86703	AACACUG	ENSMUST00000109691.4|Rapgef5|ENSMUSG00000041992.10|Rap guanine nucleotide exchange factor (GEF) 5
mm39_v1_chr10_+_59942020_59942043	1.84751	AACACUG	ENSMUST00000121820.9|Spock2|ENSMUSG00000058297.17|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
mm39_v1_chr4_-_108158242_108158303	1.82692	AACACUG	ENSMUST00000043616.7|Zyg11b|ENSMUSG00000034636.10|zyg-ll family member B, cell cycle regulator
mm39_v1_chr9_+_95441652_95441710	1.80177	AACACUG	ENSMUST00000079597.7|Paqr9|ENSMUSG00000064225.7|progestin and adipoQ receptor family member IX
mm39_v1_chr16_+_41353360_41353429	1.77763	AACACUG	ENSMUST00000099761.10|Lsamp|ENSMUSG00000061080.12|limbic system-associated membrane protein
mm39_v1_chr1_-_154602102_154602132	1.74971	AACACUG	ENSMUST00000187541.7|Cacna1e|ENSMUSG00000004110.18|calcium channel, voltage-dependent, R type, alpha 1E subunit
mm39_v1_chr8_+_129085719_129085787	1.71757	AACACUG	ENSMUST00000026917.10|Nrp1|ENSMUSG00000025810.10|neuropilin 1
mm39_v1_chr5_-_106844685_106844707	1.70844	AACACUG	ENSMUST00000127434.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112696.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112698.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644
mm39_v1_chr9_-_113855776_113855833	1.69	AACACUG	ENSMUST00000035090.14|Fbxl2|ENSMUSG00000032507.16|F-box and leucine-rich repeat protein 2
mm39_v1_chr4_+_57637817_57637845	1.68384	AACACUG	ENSMUST00000150412.4|Pakap|ENSMUSG00000089945.14|paralemmin A kinase anchor protein
mm39_v1_chr11_+_100465730_100465808	1.68348	AACACUG	ENSMUST00000103120.5|Cnp|ENSMUSG00000006782.17|2',3'-cyclic nucleotide 3' phosphodiesterase
mm39_v1_chr4_-_135221926_135221939	1.60374	AACACUG	ENSMUST00000102549.10|Nipal3|ENSMUSG00000028803.19|NIPA-like domain containing 3
mm39_v1_chr8_-_37081091_37081102	1.58378	AACACUG	ENSMUST00000033923.14|Dlc1|ENSMUSG00000031523.17|deleted in liver cancer 1
mm39_v1_chr18_+_5591864_5591902	1.55199	AACACUG	ENSMUST00000025081.13|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1	ENSMUST00000159390.8|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1
mm39_v1_chr11_-_99134885_99134964	1.54625	AACACUG	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr7_+_51271742_51271762	1.53278	AACACUG	ENSMUST00000032710.7|Slc17a6|ENSMUSG00000030500.7|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
mm39_v1_chr11_+_44409775_44409827	1.51812	AACACUG	ENSMUST00000019333.10|Rnf145|ENSMUSG00000019189.14|ring finger protein 145
mm39_v1_chr2_-_32737208_32737235	1.51561	AACACUG	ENSMUST00000077458.7|Stxbp1|ENSMUSG00000026797.17|syntaxin binding protein 1	ENSMUST00000208840.2|Stxbp1|ENSMUSG00000026797.17|syntaxin binding protein 1
mm39_v1_chr3_+_142236086_142236147	1.49538	AACACUG	ENSMUST00000171263.8|Gbp7|ENSMUSG00000040253.16|guanylate binding protein 7	ENSMUST00000045097.11|Gbp7|ENSMUSG00000040253.16|guanylate binding protein 7
mm39_v1_chr5_+_93241287_93241310	1.4658	AACACUG	ENSMUST00000074733.11|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000201700.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202196.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202308.4|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chr13_+_117738972_117739018	1.46124	AACACUG	ENSMUST00000006991.9|Hcn1|ENSMUSG00000021730.9|hyperpolarization activated cyclic nucleotide gated potassium channel 1
mm39_v1_chr17_-_91400499_91400504	1.38301	AACACUG	ENSMUST00000160844.10|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chr3_+_95836558_95836611	1.37856	AACACUG	ENSMUST00000165307.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	ENSMUST00000015893.13|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	ENSMUST00000169426.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm39_v1_chr11_-_72026547_72026604	1.34312	AACACUG	ENSMUST00000108508.3|Pitpnm3|ENSMUSG00000040543.17|PITPNM family member 3	ENSMUST00000075258.13|Pitpnm3|ENSMUSG00000040543.17|PITPNM family member 3
mm39_v1_chr2_+_29855572_29855700	1.32556	AACACUG	ENSMUST00000113719.9|Sptan1|ENSMUSG00000057738.15|spectrin alpha, non-erythrocytic 1	ENSMUST00000113717.8|Sptan1|ENSMUSG00000057738.15|spectrin alpha, non-erythrocytic 1	ENSMUST00000113741.8|Sptan1|ENSMUSG00000057738.15|spectrin alpha, non-erythrocytic 1	ENSMUST00000100225.9|Sptan1|ENSMUSG00000057738.15|spectrin alpha, non-erythrocytic 1	ENSMUST00000095083.11|Sptan1|ENSMUSG00000057738.15|spectrin alpha, non-erythrocytic 1	ENSMUST00000046257.14|Sptan1|ENSMUSG00000057738.15|spectrin alpha, non-erythrocytic 1
mm39_v1_chr1_+_158189831_158189874	1.32014	AACACUG	ENSMUST00000193042.6|Astn1|ENSMUSG00000026587.16|astrotactin 1	ENSMUST00000046110.16|Astn1|ENSMUSG00000026587.16|astrotactin 1
mm39_v1_chr15_+_91949032_91949052	1.31764	AACACUG	ENSMUST00000169825.8|Cntn1|ENSMUSG00000055022.15|contactin 1
mm39_v1_chr8_+_66070661_66070743	1.31086	AACACUG	ENSMUST00000110258.8|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1	ENSMUST00000110256.8|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1	ENSMUST00000110255.8|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1
mm39_v1_chr15_-_93234681_93234734	1.30998	AACACUG	ENSMUST00000080299.7|Yaf2|ENSMUSG00000022634.10|YY1 associated factor 2
mm39_v1_chr6_+_22875494_22875511	1.30247	AACACUG	ENSMUST00000090568.7|Ptprz1|ENSMUSG00000068748.8|protein tyrosine phosphatase, receptor type Z, polypeptide 1
mm39_v1_chr11_-_116226175_116226225	1.29856	AACACUG	ENSMUST00000036215.8|Foxj1|ENSMUSG00000034227.8|forkhead box J1
mm39_v1_chr8_+_24159669_24159690	1.29749	AACACUG	ENSMUST00000042352.11|Zmat4|ENSMUSG00000037492.17|zinc finger, matrin type 4	ENSMUST00000207301.2|Zmat4|ENSMUSG00000037492.17|zinc finger, matrin type 4
mm39_v1_chr15_+_54434576_54434596	1.29104	AACACUG	ENSMUST00000025356.4|Mal2|ENSMUSG00000024479.4|mal, T cell differentiation protein 2
mm39_v1_chr4_+_57845240_57845265	1.28064	AACACUG	ENSMUST00000102903.8|Pakap|ENSMUSG00000038729.25|paralemmin A kinase anchor protein	ENSMUST00000107598.9|Pakap|ENSMUSG00000038729.25|paralemmin A kinase anchor protein
mm39_v1_chr19_+_28812474_28812541	1.27981	AACACUG	ENSMUST00000025875.5|Slc1a1|ENSMUSG00000024935.12|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
mm39_v1_chr11_+_93886906_93886929	1.27742	AACACUG	ENSMUST00000041956.14|Spag9|ENSMUSG00000020859.17|sperm associated antigen 9
mm39_v1_chr16_-_67417768_67417810	1.26024	AACACUG	ENSMUST00000114292.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2	ENSMUST00000120898.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2
mm39_v1_chr6_-_148345834_148345887	1.25016	AACACUG	ENSMUST00000060095.15|Tmtc1|ENSMUSG00000030306.15|transmembrane and tetratricopeptide repeat containing 1	ENSMUST00000100772.10|Tmtc1|ENSMUSG00000030306.15|transmembrane and tetratricopeptide repeat containing 1
mm39_v1_chr6_-_90787100_90787142	1.2481	AACACUG	ENSMUST00000101151.10|Iqsec1|ENSMUSG00000034312.16|IQ motif and Sec7 domain 1
mm39_v1_chr15_-_93493758_93493795	1.24241	AACACUG	ENSMUST00000048982.11|Prickle1|ENSMUSG00000036158.13|prickle planar cell polarity protein 1
mm39_v1_chr2_-_131987008_131987037	1.23441	AACACUG	ENSMUST00000028815.15|Slc23a2|ENSMUSG00000027340.16|solute carrier family 23 (nucleobase transporters), member 2
mm39_v1_chr6_-_32565127_32565148	1.21321	AACACUG	ENSMUST00000115096.4|Plxna4|ENSMUSG00000029765.13|plexin A4
mm39_v1_chr13_-_43457626_43457689	1.203	AACACUG	ENSMUST00000055341.7|Gfod1|ENSMUSG00000051335.7|glucose-fructose oxidoreductase domain containing 1
mm39_v1_chr6_+_72074545_72074617	1.19869	AACACUG	ENSMUST00000069994.11|St3gal5|ENSMUSG00000056091.13|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	ENSMUST00000114112.4|St3gal5|ENSMUSG00000056091.13|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm39_v1_chr2_+_132105056_132105190	1.19027	AACACUG	ENSMUST00000110158.8|Cds2|ENSMUSG00000058793.15|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	ENSMUST00000103181.11|Cds2|ENSMUSG00000058793.15|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
mm39_v1_chr9_-_48747232_48747262	1.1694	AACACUG	ENSMUST00000093852.5|Zbtb16|ENSMUSG00000066687.6|zinc finger and BTB domain containing 16
mm39_v1_chr2_+_76236870_76236936	1.1664	AACACUG	ENSMUST00000077972.11|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6	ENSMUST00000111929.8|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6	ENSMUST00000111930.9|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6
mm39_v1_chr12_-_27392356_27392573	1.16248	AACACUG	ENSMUST00000079063.7|Sox11|ENSMUSG00000063632.7|SRY (sex determining region Y)-box 11
mm39_v1_chr18_-_35348049_35348092	1.1385	AACACUG	ENSMUST00000091636.5|Lrrtm2|ENSMUSG00000071862.4|leucine rich repeat transmembrane neuronal 2	ENSMUST00000236680.2|Lrrtm2|ENSMUSG00000071862.4|leucine rich repeat transmembrane neuronal 2
mm39_v1_chr9_+_120132962_120133026	1.13796	AACACUG	ENSMUST00000048121.13|Myrip|ENSMUSG00000041794.14|myosin VIIA and Rab interacting protein
mm39_v1_chr10_+_67373691_67373760	1.13766	AACACUG	ENSMUST00000048289.14|Egr2|ENSMUSG00000037868.16|early growth response 2	ENSMUST00000130933.2|Egr2|ENSMUSG00000037868.16|early growth response 2	ENSMUST00000105438.9|Egr2|ENSMUSG00000037868.16|early growth response 2	ENSMUST00000146986.2|Egr2|ENSMUSG00000037868.16|early growth response 2
mm39_v1_chr12_-_118265103_118265162	1.13135	AACACUG	ENSMUST00000222314.2|Sp4|ENSMUSG00000025323.11|trans-acting transcription factor 4	ENSMUST00000026367.11|Sp4|ENSMUSG00000025323.11|trans-acting transcription factor 4
mm39_v1_chr18_+_68066328_68066378	1.1272	AACACUG	ENSMUST00000063775.5|Ldlrad4|ENSMUSG00000024544.10|low density lipoprotein receptor class A domain containing 4
mm39_v1_chr10_+_29087602_29087646	1.11817	AACACUG	ENSMUST00000092627.6|9330159F19Rik|ENSMUSG00000004360.10|RIKEN cDNA 9330159F19 gene
mm39_v1_chr17_+_86475205_86475223	1.10984	AACACUG	ENSMUST00000097275.9|Prkce|ENSMUSG00000045038.15|protein kinase C, epsilon
mm39_v1_chr2_-_120680870_120680899	1.09106	AACACUG	ENSMUST00000143051.8|Ttbk2|ENSMUSG00000090100.8|tau tubulin kinase 2	ENSMUST00000057135.14|Ttbk2|ENSMUSG00000090100.8|tau tubulin kinase 2	ENSMUST00000085840.11|Ttbk2|ENSMUSG00000090100.8|tau tubulin kinase 2
mm39_v1_chr7_-_6733411_6733429	1.08945	AACACUG	ENSMUST00000239104.2|Peg3|ENSMUSG00000002265.18|paternally expressed 3	ENSMUST00000051209.11|Peg3|ENSMUSG00000002265.18|paternally expressed 3
mm39_v1_chr1_-_4566619_4566643	1.07865	AACACUG	ENSMUST00000192913.2|Sox17|ENSMUSG00000025902.14|SRY (sex determining region Y)-box 17	ENSMUST00000027035.10|Sox17|ENSMUSG00000025902.14|SRY (sex determining region Y)-box 17
mm39_v1_chr11_+_53458188_53458353	1.07777	AACACUG	ENSMUST00000057330.15|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A	ENSMUST00000120613.9|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A	ENSMUST00000173744.8|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A	ENSMUST00000118353.9|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A
mm39_v1_chr13_+_76532470_76532654	1.0699	AACACUG	ENSMUST00000125209.8|Mctp1|ENSMUSG00000021596.17|multiple C2 domains, transmembrane 1
mm39_v1_chr14_+_27344385_27344500	1.0606	AACACUG	ENSMUST00000210135.2|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2	ENSMUST00000090302.6|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2	ENSMUST00000211087.2|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2
mm39_v1_chr1_+_132345293_132345348	1.04122	AACACUG	ENSMUST00000045110.14|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase	ENSMUST00000188389.2|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase
mm39_v1_chr12_+_69939879_69940050	1.01625	AACACUG	ENSMUST00000021466.10|Atl1|ENSMUSG00000021066.10|atlastin GTPase 1
mm39_v1_chr3_-_57202301_57202320	1.00896	AACACUG	ENSMUST00000171384.8|Tm4sf1|ENSMUSG00000027800.15|transmembrane 4 superfamily member 1
mm39_v1_chr11_+_97306353_97306402	0.976817	AACACUG	ENSMUST00000121799.8|Arhgap23|ENSMUSG00000049807.17|Rho GTPase activating protein 23
mm39_v1_chr16_-_43959559_43959668	0.969866	AACACUG	ENSMUST00000063661.13|Atp6v1a|ENSMUSG00000052459.14|ATPase, H+ transporting, lysosomal V1 subunit A	ENSMUST00000114666.9|Atp6v1a|ENSMUSG00000052459.14|ATPase, H+ transporting, lysosomal V1 subunit A
mm39_v1_chr15_-_79326200_79326267	0.952433	AACACUG	ENSMUST00000117786.9|Csnk1e|ENSMUSG00000022433.22|casein kinase 1, epsilon	ENSMUST00000120859.9|Csnk1e|ENSMUSG00000022433.22|casein kinase 1, epsilon
mm39_v1_chr9_+_95836797_95836836	0.942665	AACACUG	ENSMUST00000034981.14|Xrn1|ENSMUSG00000032410.14|5'-3' exoribonuclease 1	ENSMUST00000185633.7|Xrn1|ENSMUSG00000032410.14|5'-3' exoribonuclease 1
mm39_v1_chr10_+_92996686_92996756	0.941055	AACACUG	ENSMUST00000069965.9|Cdk17|ENSMUSG00000020015.11|cyclin-dependent kinase 17
mm39_v1_chr12_+_72583114_72583169	0.931243	AACACUG	ENSMUST00000044352.8|Pcnx4|ENSMUSG00000034501.8|pecanex homolog 4
mm39_v1_chr13_-_105191403_105191438	0.930663	AACACUG	ENSMUST00000063551.7|Rgs7bp|ENSMUSG00000021719.10|regulator of G-protein signalling 7 binding protein
mm39_v1_chr7_+_18810097_18810163	0.923165	AACACUG	ENSMUST00000032570.14|Dmwd|ENSMUSG00000030410.17|dystrophia myotonica-containing WD repeat motif
mm39_v1_chr9_+_13573756_13573899	0.915318	AACACUG	ENSMUST00000177755.3|Maml2|ENSMUSG00000031925.18|mastermind like transcriptional coactivator 2
mm39_v1_chr18_+_20798337_20798477	0.903204	AACACUG	ENSMUST00000075312.5|Ttr|ENSMUSG00000061808.5|transthyretin
mm39_v1_chr5_+_150183201_150183232	0.898247	AACACUG	ENSMUST00000087204.9|Fry|ENSMUSG00000056602.14|FRY microtubule binding protein
mm39_v1_chr14_-_50020788_50020848	0.892858	AACACUG	ENSMUST00000118129.2|Armh4|ENSMUSG00000036242.16|armadillo-like helical domain containing 4	ENSMUST00000036972.14|Armh4|ENSMUSG00000036242.16|armadillo-like helical domain containing 4
mm39_v1_chr10_-_70435114_70435132	0.871006	AACACUG	ENSMUST00000046513.10|Phyhipl|ENSMUSG00000037747.10|phytanoyl-CoA hydroxylase interacting protein-like
mm39_v1_chr11_+_75084609_75084691	0.868511	AACACUG	ENSMUST00000102514.4|Rtn4rl1|ENSMUSG00000045287.7|reticulon 4 receptor-like 1
mm39_v1_chr5_+_137517140_137517140	0.861554	AACACUG	ENSMUST00000031727.10|Gigyf1|ENSMUSG00000029714.12|GRB10 interacting GYF protein 1
mm39_v1_chr18_-_31580436_31580460	0.859936	AACACUG	ENSMUST00000025110.5|Syt4|ENSMUSG00000024261.7|synaptotagmin IV
mm39_v1_chr4_-_49845549_49845549	0.846671	AACACUG	ENSMUST00000093859.11|Grin3a|ENSMUSG00000039579.16|glutamate receptor ionotropic, NMDA3A	ENSMUST00000076674.4|Grin3a|ENSMUSG00000039579.16|glutamate receptor ionotropic, NMDA3A
mm39_v1_chr4_-_91260265_91260306	0.83228	AACACUG	ENSMUST00000107110.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000008633.15|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000107118.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1
mm39_v1_chr9_+_56325893_56325965	0.831648	AACACUG	ENSMUST00000034879.5|Hmg20a|ENSMUSG00000032329.5|high mobility group 20A	ENSMUST00000215269.2|Hmg20a|ENSMUSG00000032329.5|high mobility group 20A
mm39_v1_chr3_-_132655954_132656052	0.828342	AACACUG	ENSMUST00000042744.16|Npnt|ENSMUSG00000040998.19|nephronectin	ENSMUST00000117811.8|Npnt|ENSMUSG00000040998.19|nephronectin
mm39_v1_chr2_+_163444214_163444242	0.811288	AACACUG	ENSMUST00000171696.8|Ttpal|ENSMUSG00000017679.17|tocopherol (alpha) transfer protein-like	ENSMUST00000109408.10|Ttpal|ENSMUSG00000017679.17|tocopherol (alpha) transfer protein-like
mm39_v1_chr10_+_112107026_112107026	0.809974	AACACUG	ENSMUST00000219301.2|Kcnc2|ENSMUSG00000035681.8|potassium voltage gated channel, Shaw-related subfamily, member 2	ENSMUST00000092175.4|Kcnc2|ENSMUSG00000035681.8|potassium voltage gated channel, Shaw-related subfamily, member 2
mm39_v1_chr1_-_54965470_54965561	0.807588	AACACUG	ENSMUST00000179030.8|Ankrd44|ENSMUSG00000052331.15|ankyrin repeat domain 44	ENSMUST00000044359.16|Ankrd44|ENSMUSG00000052331.15|ankyrin repeat domain 44
mm39_v1_chr9_+_51958453_51958473	0.804354	AACACUG	ENSMUST00000163153.9|Rdx|ENSMUSG00000032050.19|radixin
mm39_v1_chr10_-_94780695_94780724	0.801065	AACACUG	ENSMUST00000099337.5|Plxnc1|ENSMUSG00000074785.6|plexin C1
mm39_v1_chr16_-_60425608_60425616	0.799558	AACACUG	ENSMUST00000068860.13|Epha6|ENSMUSG00000055540.16|Eph receptor A6
mm39_v1_chr11_-_61745843_61745899	0.793987	AACACUG	ENSMUST00000004920.4|Ulk2|ENSMUSG00000004798.15|unc-51 like kinase 2
mm39_v1_chr1_-_126758369_126758515	0.788655	AACACUG	ENSMUST00000112583.8|Nckap5|ENSMUSG00000049690.16|NCK-associated protein 5	ENSMUST00000094609.10|Nckap5|ENSMUSG00000049690.16|NCK-associated protein 5
mm39_v1_chr3_+_145827410_145827438	0.787307	AACACUG	ENSMUST00000039450.5|Mcoln3|ENSMUSG00000036853.6|mucolipin 3
mm39_v1_chr15_+_4404965_4404994	0.760639	AACACUG	ENSMUST00000061925.5|Plcxd3|ENSMUSG00000049148.9|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm39_v1_chr11_-_90281721_90281753	0.755702	AACACUG	ENSMUST00000004051.8|Hlf|ENSMUSG00000003949.17|hepatic leukemia factor
mm39_v1_chr1_-_136273811_136273884	0.741309	AACACUG	ENSMUST00000048309.12|Camsap2|ENSMUSG00000041570.15|calmodulin regulated spectrin-associated protein family, member 2
mm39_v1_chr18_-_78166595_78166641	0.738843	AACACUG	ENSMUST00000091813.12|Slc14a1|ENSMUSG00000059336.15|solute carrier family 14 (urea transporter), member 1
mm39_v1_chr13_+_41013230_41013299	0.730203	AACACUG	ENSMUST00000110191.10|Gcnt2|ENSMUSG00000021360.17|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm39_v1_chr4_-_70453140_70453224	0.723364	AACACUG	ENSMUST00000107359.9|Megf9|ENSMUSG00000039270.10|multiple EGF-like-domains 9
mm39_v1_chr5_-_129085610_129085660	0.721406	AACACUG	ENSMUST00000031378.14|Stx2|ENSMUSG00000029428.14|syntaxin 2
mm39_v1_chr3_+_57643477_57643549	0.720533	AACACUG	ENSMUST00000041826.14|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000198510.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000200497.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000198214.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000200600.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000198249.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000199041.2|Rnf13|ENSMUSG00000036503.14|ring finger protein 13
mm39_v1_chr9_+_49251927_49251927	0.720246	AACACUG	ENSMUST00000075764.8|Drd2|ENSMUSG00000032259.9|dopamine receptor D2
mm39_v1_chr6_+_117840031_117840068	0.714341	AACACUG	ENSMUST00000172088.8|Zfp239|ENSMUSG00000042097.18|zinc finger protein 239	ENSMUST00000079405.15|Zfp239|ENSMUSG00000042097.18|zinc finger protein 239
mm39_v1_chr3_-_107993906_107994022	0.712915	AACACUG	ENSMUST00000102638.8|Ampd2|ENSMUSG00000027889.18|adenosine monophosphate deaminase 2	ENSMUST00000102637.8|Ampd2|ENSMUSG00000027889.18|adenosine monophosphate deaminase 2
mm39_v1_chr3_-_146518706_146518768	0.703101	AACACUG	ENSMUST00000102515.10|Prkacb|ENSMUSG00000005034.16|protein kinase, cAMP dependent, catalytic, beta
mm39_v1_chr4_+_65523223_65523289	0.700264	AACACUG	ENSMUST00000050850.14|Trim32|ENSMUSG00000051675.14|tripartite motif-containing 32	ENSMUST00000107366.2|Trim32|ENSMUSG00000051675.14|tripartite motif-containing 32
mm39_v1_chr15_-_58953838_58953867	0.692039	AACACUG	ENSMUST00000080371.8|Mtss1|ENSMUSG00000022353.11|MTSS I-BAR domain containing 1
mm39_v1_chr1_-_186438177_186438196	0.678386	AACACUG	ENSMUST00000045288.14|Tgfb2|ENSMUSG00000039239.15|transforming growth factor, beta 2
mm39_v1_chr8_+_3443018_3443073	0.677551	AACACUG	ENSMUST00000004684.13|Arhgef18|ENSMUSG00000004568.14|rho/rac guanine nucleotide exchange factor (GEF) 18	ENSMUST00000145394.3|Arhgef18|ENSMUSG00000004568.14|rho/rac guanine nucleotide exchange factor (GEF) 18
mm39_v1_chr2_-_24653059_24653164	0.676024	AACACUG	ENSMUST00000100348.10|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000041342.12|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000114447.8|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000102939.9|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000070864.14|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit
mm39_v1_chr13_-_14697770_14697811	0.67157	AACACUG	ENSMUST00000110516.3|Hecw1|ENSMUSG00000021301.10|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm39_v1_chr18_+_32510270_32510342	0.671236	AACACUG	ENSMUST00000234857.2|Bin1|ENSMUSG00000024381.17|bridging integrator 1	ENSMUST00000234496.2|Bin1|ENSMUSG00000024381.17|bridging integrator 1	ENSMUST00000091967.13|Bin1|ENSMUSG00000024381.17|bridging integrator 1	ENSMUST00000025239.9|Bin1|ENSMUSG00000024381.17|bridging integrator 1
mm39_v1_chr9_+_47441471_47441671	0.666387	AACACUG	ENSMUST00000114548.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000152459.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000143026.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000085909.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000114547.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000239368.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000214542.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000034581.4|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1
mm39_v1_chr8_+_105951777_105951827	0.664568	AACACUG	ENSMUST00000034361.10|D230025D16Rik|ENSMUSG00000031889.10|RIKEN cDNA D230025D16 gene
mm39_v1_chr11_+_110956980_110957000	0.663779	AACACUG	ENSMUST00000042970.3|Kcnj2|ENSMUSG00000041695.3|potassium inwardly-rectifying channel, subfamily J, member 2
mm39_v1_chr1_-_34882131_34882148	0.663372	AACACUG	ENSMUST00000167518.8|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B	ENSMUST00000047534.12|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B
mm39_v1_chr8_-_11058458_11058458	0.661612	AACACUG	ENSMUST00000040514.8|Irs2|ENSMUSG00000038894.8|insulin receptor substrate 2
mm39_v1_chr15_-_102044658_102044669	0.66078	AACACUG	ENSMUST00000154032.2|Spryd3|ENSMUSG00000036966.16|SPRY domain containing 3
mm39_v1_chr10_+_128583734_128583765	0.657257	AACACUG	ENSMUST00000163377.10|Pym1|ENSMUSG00000064030.16|PYM homolog 1, exon junction complex associated factor
mm39_v1_chr11_-_79971750_79971828	0.648923	AACACUG	ENSMUST00000103233.10|Crlf3|ENSMUSG00000017561.17|cytokine receptor-like factor 3	ENSMUST00000061283.15|Crlf3|ENSMUSG00000017561.17|cytokine receptor-like factor 3
mm39_v1_chr10_-_5872386_5872405	0.645836	AACACUG	ENSMUST00000131996.8|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17	ENSMUST00000064225.14|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17
mm39_v1_chr12_-_107969853_107969872	0.642548	AACACUG	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chr19_+_44282113_44282113	0.635034	AACACUG	ENSMUST00000026221.7|Scd2|ENSMUSG00000025203.7|stearoyl-Coenzyme A desaturase 2
mm39_v1_chr10_+_56253418_56253434	0.634475	AACACUG	ENSMUST00000068581.9|Gja1|ENSMUSG00000050953.11|gap junction protein, alpha 1	ENSMUST00000217789.2|Gja1|ENSMUSG00000050953.11|gap junction protein, alpha 1
mm39_v1_chr9_+_25163735_25163812	0.633367	AACACUG	ENSMUST00000115272.9|Septin7|ENSMUSG00000001833.18|septin 7	ENSMUST00000165594.4|Septin7|ENSMUSG00000001833.18|septin 7
mm39_v1_chr15_+_12117899_12118008	0.630549	AACACUG	ENSMUST00000122941.8|Zfr|ENSMUSG00000022201.17|zinc finger RNA binding protein
mm39_v1_chr7_+_100355798_100355909	0.623411	AACACUG	ENSMUST00000107042.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000207564.2|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000049053.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A
mm39_v1_chr12_+_29578354_29578468	0.622559	AACACUG	ENSMUST00000218583.2|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like	ENSMUST00000049784.17|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like
mm39_v1_chr7_+_130179063_130179214	0.621954	AACACUG	ENSMUST00000207918.2|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000215492.2|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000084513.12|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000059145.14|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2
mm39_v1_chr5_-_137682927_137682992	0.61588	AACACUG	ENSMUST00000100544.11|Agfg2|ENSMUSG00000029722.16|ArfGAP with FG repeats 2	ENSMUST00000031736.16|Agfg2|ENSMUSG00000029722.16|ArfGAP with FG repeats 2	ENSMUST00000151839.2|Agfg2|ENSMUSG00000029722.16|ArfGAP with FG repeats 2
mm39_v1_chr14_+_121272950_121272990	0.615871	AACACUG	ENSMUST00000026635.8|Farp1|ENSMUSG00000025555.15|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm39_v1_chr5_-_135963408_135963467	0.61401	AACACUG	ENSMUST00000198270.2|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	ENSMUST00000055808.6|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm39_v1_chr9_-_86762467_86762520	0.612111	AACACUG	ENSMUST00000074501.12|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91	ENSMUST00000239074.2|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91	ENSMUST00000098495.10|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91	ENSMUST00000036347.13|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91	ENSMUST00000074468.13|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91
mm39_v1_chr1_+_156386414_156386619	0.610218	AACACUG	ENSMUST00000166172.9|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	ENSMUST00000027888.13|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm39_v1_chrX_+_100683662_100683714	0.60921	AACACUG	ENSMUST00000119299.8|Ogt|ENSMUSG00000034160.14|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	ENSMUST00000044475.5|Ogt|ENSMUSG00000034160.14|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
mm39_v1_chr17_+_25407352_25407392	0.602346	AACACUG	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr11_-_61470462_61470533	0.600148	AACACUG	ENSMUST00000147501.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000146455.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108711.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108712.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000001063.15|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108713.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000179936.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000178202.8|Epn2|ENSMUSG00000001036.18|epsin 2
mm39_v1_chr2_+_173918715_173918859	0.598813	AACACUG	ENSMUST00000087908.10|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000044638.13|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000156054.2|Stx16|ENSMUSG00000027522.16|syntaxin 16
mm39_v1_chr11_+_17109263_17109404	0.597448	AACACUG	ENSMUST00000102880.5|Ppp3r1|ENSMUSG00000033953.11|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm39_v1_chr4_+_28813125_28813139	0.594472	AACACUG	ENSMUST00000080934.11|Epha7|ENSMUSG00000028289.13|Eph receptor A7	ENSMUST00000029964.12|Epha7|ENSMUSG00000028289.13|Eph receptor A7
mm39_v1_chr2_-_120439764_120439798	0.590218	AACACUG	ENSMUST00000102496.8|Lrrc57|ENSMUSG00000027286.17|leucine rich repeat containing 57
mm39_v1_chr15_-_36794741_36794791	0.585382	AACACUG	ENSMUST00000110361.8|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	ENSMUST00000022894.14|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	ENSMUST00000110359.2|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm39_v1_chr13_+_104315301_104315374	0.585088	AACACUG	ENSMUST00000022225.12|Trim23|ENSMUSG00000021712.16|tripartite motif-containing 23	ENSMUST00000069187.12|Trim23|ENSMUSG00000021712.16|tripartite motif-containing 23
mm39_v1_chrX_+_99811325_99811355	0.581014	AACACUG	ENSMUST00000000901.13|Dlg3|ENSMUSG00000000881.13|discs large MAGUK scaffold protein 3	ENSMUST00000113736.9|Dlg3|ENSMUSG00000000881.13|discs large MAGUK scaffold protein 3	ENSMUST00000087984.11|Dlg3|ENSMUSG00000000881.13|discs large MAGUK scaffold protein 3
mm39_v1_chr15_+_93296225_93296304	0.573316	AACACUG	ENSMUST00000109256.11|Pphln1|ENSMUSG00000036167.17|periphilin 1	ENSMUST00000049122.16|Pphln1|ENSMUSG00000036167.17|periphilin 1	ENSMUST00000068457.15|Pphln1|ENSMUSG00000036167.17|periphilin 1
mm39_v1_chr11_-_8614497_8614594	0.572066	AACACUG	ENSMUST00000020695.13|Tns3|ENSMUSG00000020422.15|tensin 3
mm39_v1_chr12_+_55883101_55883146	0.552328	AACACUG	ENSMUST00000059250.8|Brms1l|ENSMUSG00000012076.9|breast cancer metastasis-suppressor 1-like
mm39_v1_chr15_+_99936516_99936552	0.548376	AACACUG	ENSMUST00000100203.10|Dip2b|ENSMUSG00000023026.17|disco interacting protein 2 homolog B
mm39_v1_chr14_-_25769457_25769513	0.546358	AACACUG	ENSMUST00000069180.8|Zcchc24|ENSMUSG00000055538.8|zinc finger, CCHC domain containing 24
mm39_v1_chr5_-_66775979_66776056	0.544629	AACACUG	ENSMUST00000162382.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000159786.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000162349.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000087256.12|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000160103.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000160870.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2
mm39_v1_chr6_+_108637577_108637643	0.544434	AACACUG	ENSMUST00000032194.11|Bhlhe40|ENSMUSG00000030103.12|basic helix-loop-helix family, member e40
mm39_v1_chr14_+_13803477_13803536	0.535417	AACACUG	ENSMUST00000102996.4|Cfap20dc|ENSMUSG00000021747.13|CFAP20 domain containing
mm39_v1_chr16_+_44215136_44215193	0.533408	AACACUG	ENSMUST00000099742.9|Cfap44|ENSMUSG00000071550.15|cilia and flagella associated protein 44
mm39_v1_chr3_-_121056944_121056997	0.532776	AACACUG	ENSMUST00000128909.8|Tlcd4|ENSMUSG00000028132.16|TLC domain containing 4	ENSMUST00000029777.14|Tlcd4|ENSMUSG00000028132.16|TLC domain containing 4
mm39_v1_chr12_+_52746158_52746186	0.529095	AACACUG	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr1_-_58625431_58625482	0.524058	AACACUG	ENSMUST00000161000.2|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B	ENSMUST00000161600.8|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B
mm39_v1_chr9_-_16289527_16289527	0.523766	AACACUG	ENSMUST00000082170.6|Fat3|ENSMUSG00000074505.7|FAT atypical cadherin 3
mm39_v1_chr8_-_105169621_105169679	0.509703	AACACUG	ENSMUST00000041769.8|Dync1li2|ENSMUSG00000035770.9|dynein, cytoplasmic 1 light intermediate chain 2
mm39_v1_chr2_+_30127692_30127759	0.495131	AACACUG	ENSMUST00000113654.8|Lrrc8a|ENSMUSG00000007476.19|leucine rich repeat containing 8A VRAC subunit A	ENSMUST00000095078.3|Lrrc8a|ENSMUSG00000007476.19|leucine rich repeat containing 8A VRAC subunit A
mm39_v1_chr6_+_8948608_8948619	0.488089	AACACUG	ENSMUST00000160300.2|Nxph1|ENSMUSG00000046178.4|neurexophilin 1
mm39_v1_chr18_-_47501897_47501945	0.486878	AACACUG	ENSMUST00000019791.14|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	ENSMUST00000115449.9|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm39_v1_chr4_-_117992064_117992168	0.486689	AACACUG	ENSMUST00000097912.8|St3gal3|ENSMUSG00000028538.13|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	ENSMUST00000030263.9|St3gal3|ENSMUSG00000028538.13|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	ENSMUST00000106410.8|St3gal3|ENSMUSG00000028538.13|ST3 beta-galactoside alpha-2,3-sialyltransferase 3
mm39_v1_chr7_-_64806164_64806318	0.486392	AACACUG	ENSMUST00000148459.3|Fam189a1|ENSMUSG00000030518.18|family with sequence similarity 189, member A1	ENSMUST00000119118.8|Fam189a1|ENSMUSG00000030518.18|family with sequence similarity 189, member A1
mm39_v1_chr3_-_144275897_144275989	0.484531	AACACUG	ENSMUST00000043325.9|Hs2st1|ENSMUSG00000040151.10|heparan sulfate 2-O-sulfotransferase 1
mm39_v1_chr8_+_46616688_46616767	0.484528	AACACUG	ENSMUST00000034048.13|Cfap97|ENSMUSG00000031631.16|cilia and flagella associated protein 97	ENSMUST00000145229.2|Cfap97|ENSMUSG00000031631.16|cilia and flagella associated protein 97
mm39_v1_chrX_-_142716200_142716307	0.480917	AACACUG	ENSMUST00000112851.8|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000112856.3|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000033642.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr17_-_30107544_30107682	0.479166	AACACUG	ENSMUST00000171691.9|Mdga1|ENSMUSG00000043557.17|MAM domain containing glycosylphosphatidylinositol anchor 1
mm39_v1_chr14_+_5894220_5894254	0.478668	AACACUG	ENSMUST00000063750.8|Rarb|ENSMUSG00000017491.10|retinoic acid receptor, beta
mm39_v1_chr8_+_45960931_45960955	0.475709	AACACUG	ENSMUST00000171337.10|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000067107.15|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr2_-_45003270_45003296	0.469325	AACACUG	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr14_-_4808744_4808823	0.462412	AACACUG	ENSMUST00000022303.17|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta	ENSMUST00000091471.12|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta
mm39_v1_chr5_-_52723700_52723804	0.452236	AACACUG	ENSMUST00000039750.7|Lgi2|ENSMUSG00000039252.12|leucine-rich repeat LGI family, member 2
mm39_v1_chr5_+_24890810_24890822	0.449164	AACACUG	ENSMUST00000068825.8|Nub1|ENSMUSG00000028954.12|negative regulator of ubiquitin-like proteins 1
mm39_v1_chr6_-_35516700_35516823	0.429551	AACACUG	ENSMUST00000201026.2|Mtpn|ENSMUSG00000029840.9|myotrophin	ENSMUST00000031866.9|Mtpn|ENSMUSG00000029840.9|myotrophin
mm39_v1_chr11_-_98040377_98040446	0.422544	AACACUG	ENSMUST00000103143.10|Fbxl20|ENSMUSG00000020883.19|F-box and leucine-rich repeat protein 20
mm39_v1_chr10_+_111309020_111309108	0.417171	AACACUG	ENSMUST00000065917.16|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1	ENSMUST00000219961.2|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1	ENSMUST00000217908.2|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1
mm39_v1_chr11_-_20781009_20781056	0.415873	AACACUG	ENSMUST00000047028.9|Lgalsl|ENSMUSG00000042363.15|lectin, galactoside binding-like
mm39_v1_chr6_-_124715560_124715588	0.407199	AACACUG	ENSMUST00000004377.15|Ptpn6|ENSMUSG00000004266.16|protein tyrosine phosphatase, non-receptor type 6
mm39_v1_chr19_-_37184692_37184907	0.406753	AACACUG	ENSMUST00000132580.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000079754.11|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000136286.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000126188.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000126781.2|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3
mm39_v1_chr7_+_4140031_4140070	0.401774	AACACUG	ENSMUST00000128756.8|Leng8|ENSMUSG00000035545.14|leukocyte receptor cluster (LRC) member 8	ENSMUST00000132086.8|Leng8|ENSMUSG00000035545.14|leukocyte receptor cluster (LRC) member 8	ENSMUST00000037472.13|Leng8|ENSMUSG00000035545.14|leukocyte receptor cluster (LRC) member 8	ENSMUST00000117274.8|Leng8|ENSMUSG00000035545.14|leukocyte receptor cluster (LRC) member 8	ENSMUST00000121270.8|Leng8|ENSMUSG00000035545.14|leukocyte receptor cluster (LRC) member 8	ENSMUST00000144248.3|Leng8|ENSMUSG00000035545.14|leukocyte receptor cluster (LRC) member 8
mm39_v1_chr5_+_150597204_150597269	0.396566	AACACUG	ENSMUST00000202170.4|Pds5b|ENSMUSG00000034021.16|PDS5 cohesin associated factor B	ENSMUST00000016569.11|Pds5b|ENSMUSG00000034021.16|PDS5 cohesin associated factor B
mm39_v1_chr1_+_136059101_136059142	0.396335	AACACUG	ENSMUST00000075164.11|Kif21b|ENSMUSG00000041642.19|kinesin family member 21B
mm39_v1_chr14_+_30973407_30973489	0.39633	AACACUG	ENSMUST00000022458.11|Bap1|ENSMUSG00000021901.11|Brca1 associated protein 1
mm39_v1_chr13_-_63713549_63713549	0.380963	AACACUG	ENSMUST00000021921.11|Ptch1|ENSMUSG00000021466.13|patched 1
mm39_v1_chr5_+_143450329_143450355	0.380521	AACACUG	ENSMUST00000045593.12|Daglb|ENSMUSG00000039206.14|diacylglycerol lipase, beta
mm39_v1_chr14_-_80008745_80008758	0.373863	AACACUG	ENSMUST00000039568.11|Pcdh8|ENSMUSG00000036422.11|protocadherin 8	ENSMUST00000195355.2|Pcdh8|ENSMUSG00000036422.11|protocadherin 8
mm39_v1_chr5_-_25047577_25047623	0.364802	AACACUG	ENSMUST00000030787.9|Rheb|ENSMUSG00000028945.10|Ras homolog enriched in brain
mm39_v1_chr5_+_111478608_111478673	0.361318	AACACUG	ENSMUST00000086635.9|Pitpnb|ENSMUSG00000050017.12|phosphatidylinositol transfer protein, beta	ENSMUST00000200298.2|Pitpnb|ENSMUSG00000050017.12|phosphatidylinositol transfer protein, beta
mm39_v1_chr3_-_94490023_94490077	0.359334	AACACUG	ENSMUST00000029783.16|Snx27|ENSMUSG00000028136.16|sorting nexin family member 27
mm39_v1_chrX_-_156381652_156381711	0.357076	AACACUG	ENSMUST00000149249.2|Mbtps2|ENSMUSG00000046873.19|membrane-bound transcription factor peptidase, site 2	ENSMUST00000058098.15|Mbtps2|ENSMUSG00000046873.19|membrane-bound transcription factor peptidase, site 2
mm39_v1_chr8_+_4216556_4216739	0.355039	AACACUG	ENSMUST00000239400.2|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000177053.8|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176149.9|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176072.9|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176825.3|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like
mm39_v1_chrX_+_6489313_6489349	0.353268	AACACUG	ENSMUST00000089520.3|Shroom4|ENSMUSG00000068270.16|shroom family member 4
mm39_v1_chr18_+_35695199_35695313	0.352253	AACACUG	ENSMUST00000236860.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000166793.10|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237780.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000236507.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000235960.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237061.2|Matr3|ENSMUSG00000037236.17|matrin 3
mm39_v1_chr1_+_136552639_136552688	0.350094	AACACUG	ENSMUST00000047734.15|Zfp281|ENSMUSG00000041483.15|zinc finger protein 281	ENSMUST00000112046.2|Zfp281|ENSMUSG00000041483.15|zinc finger protein 281
mm39_v1_chr18_-_53877579_53877710	0.348603	AACACUG	ENSMUST00000049811.8|Cep120|ENSMUSG00000048799.9|centrosomal protein 120	ENSMUST00000237062.2|Cep120|ENSMUSG00000048799.9|centrosomal protein 120
mm39_v1_chr9_+_68561042_68561068	0.345836	AACACUG	ENSMUST00000034766.14|Rora|ENSMUSG00000032238.18|RAR-related orphan receptor alpha
mm39_v1_chr7_+_26958150_26958240	0.340053	AACACUG	ENSMUST00000079258.7|Numbl|ENSMUSG00000063160.13|numb-like
mm39_v1_chr2_-_155953874_155953898	0.335866	AACACUG	ENSMUST00000059647.12|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12	ENSMUST00000109604.9|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12	ENSMUST00000142960.9|Cpne1|ENSMUSG00000074643.13|copine I	ENSMUST00000138068.2|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12	ENSMUST00000136296.9|Cpne1|ENSMUSG00000074643.13|copine I	ENSMUST00000128499.2|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12
mm39_v1_chr9_-_56151334_56151382	0.335117	AACACUG	ENSMUST00000188142.7|Peak1|ENSMUSG00000074305.10|pseudopodium-enriched atypical kinase 1
mm39_v1_chr5_+_118698689_118698804	0.330407	AACACUG	ENSMUST00000100816.8|Med13l|ENSMUSG00000018076.13|mediator complex subunit 13-like	ENSMUST00000201010.2|Med13l|ENSMUSG00000018076.13|mediator complex subunit 13-like
mm39_v1_chr11_+_85780807_85780889	0.329958	AACACUG	ENSMUST00000000096.12|Tbx4|ENSMUSG00000000094.13|T-box 4
mm39_v1_chr9_-_123461593_123461630	0.317992	AACACUG	ENSMUST00000026273.11|Slc6a20b|ENSMUSG00000025243.18|solute carrier family 6 (neurotransmitter transporter), member 20B
mm39_v1_chr2_-_73143045_73143068	0.314041	AACACUG	ENSMUST00000058615.10|Cir1|ENSMUSG00000041777.13|corepressor interacting with RBPJ, 1
mm39_v1_chr18_-_55123153_55123238	0.311636	AACACUG	ENSMUST00000064763.7|Zfp608|ENSMUSG00000052713.10|zinc finger protein 608
mm39_v1_chr5_+_28522150_28522217	0.308136	AACACUG	ENSMUST00000114884.8|Rbm33|ENSMUSG00000048271.15|RNA binding motif protein 33	ENSMUST00000059644.13|Rbm33|ENSMUSG00000048271.15|RNA binding motif protein 33	ENSMUST00000030920.6|Rbm33|ENSMUSG00000048271.15|RNA binding motif protein 33
mm39_v1_chr5_-_29583300_29583399	0.301944	AACACUG	ENSMUST00000196321.5|Lmbr1|ENSMUSG00000010721.16|limb region 1	ENSMUST00000200564.5|Lmbr1|ENSMUSG00000010721.16|limb region 1	ENSMUST00000055195.11|Lmbr1|ENSMUSG00000010721.16|limb region 1	ENSMUST00000198105.5|Lmbr1|ENSMUSG00000010721.16|limb region 1	ENSMUST00000179191.6|Lmbr1|ENSMUSG00000010721.16|limb region 1
mm39_v1_chr11_-_100713348_100713405	0.300815	AACACUG	ENSMUST00000107358.9|Stat5b|ENSMUSG00000020919.12|signal transducer and activator of transcription 5B
mm39_v1_chr10_-_43050516_43050565	0.300054	AACACUG	ENSMUST00000040275.9|Sobp|ENSMUSG00000038248.9|sine oculis binding protein
mm39_v1_chr2_-_101479846_101479884	0.290556	AACACUG	ENSMUST00000078494.6|Rag1|ENSMUSG00000061311.7|recombination activating 1	ENSMUST00000160722.8|Iftap|ENSMUSG00000027165.17|intraflagellar transport associated protein	ENSMUST00000160037.8|Iftap|ENSMUSG00000027165.17|intraflagellar transport associated protein
mm39_v1_chr2_-_168443540_168443577	0.285583	AACACUG	ENSMUST00000171689.8|Nfatc2|ENSMUSG00000027544.17|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	ENSMUST00000137451.2|Nfatc2|ENSMUSG00000027544.17|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2
mm39_v1_chr2_+_37342248_37342297	0.284793	AACACUG	ENSMUST00000148470.8|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1	ENSMUST00000066055.10|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1	ENSMUST00000112920.2|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1
mm39_v1_chr15_-_103148239_103148297	0.279399	AACACUG	ENSMUST00000118152.8|Cbx5|ENSMUSG00000009575.15|chromobox 5
mm39_v1_chr18_-_77801624_77801673	0.278436	AACACUG	ENSMUST00000074653.6|8030462N17Rik|ENSMUSG00000047466.11|RIKEN cDNA 8030462N17 gene
mm39_v1_chr17_+_29171386_29171573	0.27648	AACACUG	ENSMUST00000118762.9|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000057174.16|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000232874.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000232772.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000233334.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000150858.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000233064.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20
mm39_v1_chr5_-_86320599_86320662	0.275638	AACACUG	ENSMUST00000039373.14|Uba6|ENSMUSG00000035898.14|ubiquitin-like modifier activating enzyme 6
mm39_v1_chr7_+_88079465_88079495	0.271733	AACACUG	ENSMUST00000107256.4|Rab38|ENSMUSG00000030559.9|RAB38, member RAS oncogene family
mm39_v1_chr17_+_26934617_26934698	0.270696	AACACUG	ENSMUST00000062519.14|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000144221.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000142539.8|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000151681.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor
mm39_v1_chr16_+_91526169_91526272	0.269666	AACACUG	ENSMUST00000114001.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000113999.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000064797.12|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000114002.9|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000095909.10|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000056482.14|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000113996.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)
mm39_v1_chr14_-_70757601_70757628	0.269188	AACACUG	ENSMUST00000022693.9|Bmp1|ENSMUSG00000022098.11|bone morphogenetic protein 1
mm39_v1_chr11_+_19874354_19874375	0.268568	AACACUG	ENSMUST00000093299.13|Spred2|ENSMUSG00000045671.18|sprouty-related EVH1 domain containing 2
mm39_v1_chr16_+_3702523_3702547	0.268148	AACACUG	ENSMUST00000176625.8|Naa60|ENSMUSG00000005982.15|N(alpha)-acetyltransferase 60, NatF catalytic subunit	ENSMUST00000186375.8|Naa60|ENSMUSG00000005982.15|N(alpha)-acetyltransferase 60, NatF catalytic subunit
mm39_v1_chr5_-_124465946_124466035	0.265163	AACACUG	ENSMUST00000031344.13|Mphosph9|ENSMUSG00000038126.18|M-phase phosphoprotein 9
mm39_v1_chr11_-_115590318_115590360	0.260024	AACACUG	ENSMUST00000106497.8|Grb2|ENSMUSG00000059923.14|growth factor receptor bound protein 2
mm39_v1_chr18_+_10725532_10725564	0.256334	AACACUG	ENSMUST00000052838.11|Mib1|ENSMUSG00000024294.15|mindbomb E3 ubiquitin protein ligase 1
mm39_v1_chr6_+_92068361_92068371	0.250177	AACACUG	ENSMUST00000113460.8|Nr2c2|ENSMUSG00000005893.15|nuclear receptor subfamily 2, group C, member 2
mm39_v1_chr4_-_149391963_149392161	0.249537	AACACUG	ENSMUST00000055647.15|Kif1b|ENSMUSG00000063077.16|kinesin family member 1B	ENSMUST00000030806.6|Kif1b|ENSMUSG00000063077.16|kinesin family member 1B	ENSMUST00000238956.2|Kif1b|ENSMUSG00000063077.16|kinesin family member 1B	ENSMUST00000060537.13|Kif1b|ENSMUSG00000063077.16|kinesin family member 1B
mm39_v1_chr11_+_53410552_53410627	0.249357	AACACUG	ENSMUST00000108987.8|Septin8|ENSMUSG00000018398.19|septin 8	ENSMUST00000121334.8|Septin8|ENSMUSG00000018398.19|septin 8	ENSMUST00000117061.8|Septin8|ENSMUSG00000018398.19|septin 8
mm39_v1_chr11_-_65679101_65679147	0.245787	AACACUG	ENSMUST00000152096.8|Map2k4|ENSMUSG00000033352.12|mitogen-activated protein kinase kinase 4	ENSMUST00000046963.10|Map2k4|ENSMUSG00000033352.12|mitogen-activated protein kinase kinase 4
mm39_v1_chr9_-_48406564_48406635	0.245402	AACACUG	ENSMUST00000213276.2|Rbm7|ENSMUSG00000042396.11|RNA binding motif protein 7	ENSMUST00000170000.4|Rbm7|ENSMUSG00000042396.11|RNA binding motif protein 7
mm39_v1_chr7_+_99184645_99184709	0.244653	AACACUG	ENSMUST00000098266.9|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1	ENSMUST00000179755.8|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1
mm39_v1_chr1_+_166206666_166206666	0.236291	AACACUG	ENSMUST00000027846.8|Tada1|ENSMUSG00000026563.14|transcriptional adaptor 1
mm39_v1_chr5_-_148989821_148989863	0.232038	AACACUG	ENSMUST00000139443.8|Hmgb1|ENSMUSG00000066551.13|high mobility group box 1	ENSMUST00000085546.13|Hmgb1|ENSMUSG00000066551.13|high mobility group box 1
mm39_v1_chr19_+_36811615_36811698	0.23107	AACACUG	ENSMUST00000025729.12|Tnks2|ENSMUSG00000024811.12|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
mm39_v1_chr6_-_84570890_84570903	0.229319	AACACUG	ENSMUST00000168003.9|Cyp26b1|ENSMUSG00000063415.13|cytochrome P450, family 26, subfamily b, polypeptide 1
mm39_v1_chr16_+_16801246_16801278	0.229143	AACACUG	ENSMUST00000232611.2|Mapk1|ENSMUSG00000063358.18|mitogen-activated protein kinase 1	ENSMUST00000069107.14|Mapk1|ENSMUSG00000063358.18|mitogen-activated protein kinase 1
mm39_v1_chr4_-_120955387_120955447	0.226536	AACACUG	ENSMUST00000058754.9|Zmpste24|ENSMUSG00000043207.11|zinc metallopeptidase, STE24
mm39_v1_chr7_+_5083212_5083300	0.218416	AACACUG	ENSMUST00000098845.10|Epn1|ENSMUSG00000035203.17|epsin 1	ENSMUST00000146317.8|Epn1|ENSMUSG00000035203.17|epsin 1	ENSMUST00000153169.2|Epn1|ENSMUSG00000035203.17|epsin 1	ENSMUST00000045277.7|Epn1|ENSMUSG00000035203.17|epsin 1
mm39_v1_chr16_+_49675969_49676120	0.21829	AACACUG	ENSMUST00000229101.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000230836.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000229206.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000084838.14|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000230281.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm39_v1_chr8_+_112667328_112667341	0.215236	AACACUG	ENSMUST00000034428.8|Gabarapl2|ENSMUSG00000031950.8|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2
mm39_v1_chr2_-_115896279_115896334	0.213826	AACACUG	ENSMUST00000110907.8|Meis2|ENSMUSG00000027210.21|Meis homeobox 2	ENSMUST00000110908.9|Meis2|ENSMUSG00000027210.21|Meis homeobox 2
mm39_v1_chr7_+_141055135_141055153	0.209875	AACACUG	ENSMUST00000026585.14|Tspan4|ENSMUSG00000025511.16|tetraspanin 4
mm39_v1_chr12_-_78908409_78908420	0.209224	AACACUG	ENSMUST00000021536.9|Atp6v1d|ENSMUSG00000021114.10|ATPase, H+ transporting, lysosomal V1 subunit D
mm39_v1_chr5_+_20112500_20112549	0.204741	AACACUG	ENSMUST00000101558.10|Magi2|ENSMUSG00000040003.19|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm39_v1_chr18_+_53995156_53995215	0.201834	AACACUG	ENSMUST00000069597.8|Csnk1g3|ENSMUSG00000073563.4|casein kinase 1, gamma 3
mm39_v1_chr11_-_68291638_68291662	0.199732	AACACUG	ENSMUST00000108674.9|Ntn1|ENSMUSG00000020902.13|netrin 1
mm39_v1_chr2_+_4405769_4405786	0.197742	AACACUG	ENSMUST00000075767.14|Frmd4a|ENSMUSG00000026657.18|FERM domain containing 4A
mm39_v1_chr14_+_79825131_79825152	0.197678	AACACUG	ENSMUST00000054908.10|Sugt1|ENSMUSG00000022024.11|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)
mm39_v1_chr16_+_33005426_33005537	0.192842	AACACUG	ENSMUST00000232100.2|Osbpl11|ENSMUSG00000022807.10|oxysterol binding protein-like 11	ENSMUST00000232181.2|Osbpl11|ENSMUSG00000022807.10|oxysterol binding protein-like 11	ENSMUST00000039733.10|Osbpl11|ENSMUSG00000022807.10|oxysterol binding protein-like 11
mm39_v1_chr6_-_13607963_13608099	0.191377	AACACUG	ENSMUST00000031554.9|Tmem168|ENSMUSG00000029569.10|transmembrane protein 168	ENSMUST00000149123.3|Tmem168|ENSMUSG00000029569.10|transmembrane protein 168
mm39_v1_chr11_+_80274105_80274223	0.190908	AACACUG	ENSMUST00000165565.8|Zfp207|ENSMUSG00000017421.19|zinc finger protein 207	ENSMUST00000188489.7|Zfp207|ENSMUSG00000017421.19|zinc finger protein 207	ENSMUST00000017567.14|Zfp207|ENSMUSG00000017421.19|zinc finger protein 207	ENSMUST00000108216.8|Zfp207|ENSMUSG00000017421.19|zinc finger protein 207	ENSMUST00000053740.15|Zfp207|ENSMUSG00000017421.19|zinc finger protein 207
mm39_v1_chr5_+_17779273_17779291	0.188871	AACACUG	ENSMUST00000030568.14|Sema3c|ENSMUSG00000028780.14|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
mm39_v1_chr5_-_102217770_102217807	0.188298	AACACUG	ENSMUST00000053177.14|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3	ENSMUST00000174698.2|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3
mm39_v1_chr2_-_12424212_12424291	0.185485	AACACUG	ENSMUST00000124603.8|Mindy3|ENSMUSG00000026767.13|MINDY lysine 48 deubiquitinase 3	ENSMUST00000129993.3|Mindy3|ENSMUSG00000026767.13|MINDY lysine 48 deubiquitinase 3	ENSMUST00000028105.13|Mindy3|ENSMUSG00000026767.13|MINDY lysine 48 deubiquitinase 3
mm39_v1_chr4_+_136038263_136038296	0.183481	AACACUG	ENSMUST00000105850.8|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R	ENSMUST00000148843.10|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr18_-_38734389_38734468	0.182257	AACACUG	ENSMUST00000025295.8|Spry4|ENSMUSG00000024427.8|sprouty RTK signaling antagonist 4
mm39_v1_chr6_+_86415342_86415386	0.181277	AACACUG	ENSMUST00000050497.14|C87436|ENSMUSG00000046679.17|expressed sequence C87436	ENSMUST00000203568.3|C87436|ENSMUSG00000046679.17|expressed sequence C87436
mm39_v1_chr2_+_106523532_106523624	0.180225	AACACUG	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chr9_-_26941306_26941410	0.175684	AACACUG	ENSMUST00000034470.11|Vps26b|ENSMUSG00000031988.11|VPS26 retromer complex component B
mm39_v1_chr4_+_126915104_126915133	0.170147	AACACUG	ENSMUST00000030623.8|Sfpq|ENSMUSG00000028820.14|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm39_v1_chr16_+_32427738_32427763	0.164724	AACACUG	ENSMUST00000023486.15|Tfrc|ENSMUSG00000022797.17|transferrin receptor
mm39_v1_chr6_+_29348068_29348123	0.163952	AACACUG	ENSMUST00000173216.8|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000173694.5|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000172974.8|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000031779.17|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000090481.14|Calu|ENSMUSG00000029767.17|calumenin
mm39_v1_chrX_-_41000746_41000787	0.161953	AACACUG	ENSMUST00000047037.15|Thoc2|ENSMUSG00000037475.16|THO complex 2
mm39_v1_chr18_+_44513547_44513644	0.156205	AACACUG	ENSMUST00000202306.2|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2	ENSMUST00000025350.10|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2
mm39_v1_chr3_+_40848580_40848780	0.154768	AACACUG	ENSMUST00000159774.7|Abhd18|ENSMUSG00000037818.17|abhydrolase domain containing 18	ENSMUST00000203472.3|Abhd18|ENSMUSG00000037818.17|abhydrolase domain containing 18	ENSMUST00000203650.3|Abhd18|ENSMUSG00000037818.17|abhydrolase domain containing 18	ENSMUST00000108077.10|Abhd18|ENSMUSG00000037818.17|abhydrolase domain containing 18	ENSMUST00000203892.2|Abhd18|ENSMUSG00000037818.17|abhydrolase domain containing 18
mm39_v1_chr18_+_23885390_23885458	0.15464	AACACUG	ENSMUST00000170802.8|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2	ENSMUST00000155708.8|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2	ENSMUST00000118826.9|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2
mm39_v1_chr12_-_31684588_31684679	0.151354	AACACUG	ENSMUST00000020979.9|Bcap29|ENSMUSG00000020650.16|B cell receptor associated protein 29	ENSMUST00000177962.9|Bcap29|ENSMUSG00000020650.16|B cell receptor associated protein 29
mm39_v1_chr18_+_69478790_69478882	0.148276	AACACUG	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr9_+_59658156_59658205	0.146885	AACACUG	ENSMUST00000136740.8|Myo9a|ENSMUSG00000039585.16|myosin IXa	ENSMUST00000135298.8|Myo9a|ENSMUSG00000039585.16|myosin IXa	ENSMUST00000128341.2|Myo9a|ENSMUSG00000039585.16|myosin IXa
mm39_v1_chr2_-_152256947_152256947	0.141966	AACACUG	ENSMUST00000099207.5|Zcchc3|ENSMUSG00000074682.5|zinc finger, CCHC domain containing 3
mm39_v1_chr6_+_143112936_143113026	0.139578	AACACUG	ENSMUST00000204947.3|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1	ENSMUST00000032413.7|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1	ENSMUST00000205256.2|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1
mm39_v1_chr7_+_112806672_112806803	0.138602	AACACUG	ENSMUST00000047321.9|Arntl|ENSMUSG00000055116.9|aryl hydrocarbon receptor nuclear translocator-like	ENSMUST00000210074.2|Arntl|ENSMUSG00000055116.9|aryl hydrocarbon receptor nuclear translocator-like	ENSMUST00000210238.2|Arntl|ENSMUSG00000055116.9|aryl hydrocarbon receptor nuclear translocator-like
mm39_v1_chr6_-_83418656_83418666	0.138265	AACACUG	ENSMUST00000089622.11|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
mm39_v1_chr6_-_99243455_99243501	0.135579	AACACUG	ENSMUST00000113326.9|Foxp1|ENSMUSG00000030067.18|forkhead box P1
mm39_v1_chr11_+_114566257_114566321	0.134701	AACACUG	ENSMUST00000045779.6|Ttyh2|ENSMUSG00000034714.10|tweety family member 2
mm39_v1_chr8_-_86159398_86159465	0.134652	AACACUG	ENSMUST00000047749.7|4921524J17Rik|ENSMUSG00000036934.10|RIKEN cDNA 4921524J17 gene
mm39_v1_chr2_-_73360069_73360080	0.130862	AACACUG	ENSMUST00000094681.11|Wipf1|ENSMUSG00000075284.11|WAS/WASL interacting protein family, member 1
mm39_v1_chr14_-_60324265_60324374	0.130762	AACACUG	ENSMUST00000080368.13|Atp8a2|ENSMUSG00000021983.17|ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
mm39_v1_chrX_-_10083157_10083160	0.125533	AACACUG	ENSMUST00000072393.9|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000044598.13|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000073392.11|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000115533.8|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000115532.2|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator
mm39_v1_chr2_+_166647426_166647525	0.118233	AACACUG	ENSMUST00000099078.10|Arfgef2|ENSMUSG00000074582.11|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm39_v1_chr4_+_31964082_31964263	0.114543	AACACUG	ENSMUST00000037607.11|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000080933.13|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000108183.8|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000108184.3|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7
mm39_v1_chr1_-_156767123_156767186	0.111394	AACACUG	ENSMUST00000189316.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000190648.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000172057.8|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000191605.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2
mm39_v1_chr16_+_32882882_32882919	0.111293	AACACUG	ENSMUST00000023497.3|Lmln|ENSMUSG00000022802.3|leishmanolysin-like (metallopeptidase M8 family)
mm39_v1_chr6_+_134958681_134958681	0.109897	AACACUG	ENSMUST00000167323.3|Apold1|ENSMUSG00000090698.3|apolipoprotein L domain containing 1
mm39_v1_chr8_-_112580910_112580988	0.102653	AACACUG	ENSMUST00000034432.7|Cfdp1|ENSMUSG00000031954.7|craniofacial development protein 1
mm39_v1_chr10_-_40948275_40948286	0.100613	AACACUG	ENSMUST00000061796.8|Gpr6|ENSMUSG00000046922.8|G protein-coupled receptor 6
mm39_v1_chrX_-_162859095_162859125	0.100479	AACACUG	ENSMUST00000037928.9|Siah1b|ENSMUSG00000040749.12|siah E3 ubiquitin protein ligase 1B
mm39_v1_chr9_-_65734826_65734859	0.0984631	AACACUG	ENSMUST00000159109.2|Zfp609|ENSMUSG00000040524.10|zinc finger protein 609
mm39_v1_chr7_-_73191484_73191503	0.0917589	AACACUG	ENSMUST00000197642.2|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000026895.14|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000169922.9|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2
mm39_v1_chr2_+_15060051_15060222	0.0906337	AACACUG	ENSMUST00000069870.11|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B	ENSMUST00000239125.2|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B	ENSMUST00000193836.3|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B
mm39_v1_chr5_+_16139760_16139827	0.0874481	AACACUG	ENSMUST00000101581.10|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000039370.14|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000199704.5|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000180204.8|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000078272.13|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000115281.7|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm39_v1_chrX_+_141882590_141882590	0.0874247	AACACUG	ENSMUST00000165829.3|Rtl9|ENSMUSG00000085584.4|retrotransposon Gag like 9
mm39_v1_chr19_+_37184927_37184988	0.087271	AACACUG	ENSMUST00000024078.15|Marchf5|ENSMUSG00000023307.15|membrane associated ring-CH-type finger 5	ENSMUST00000112391.8|Marchf5|ENSMUSG00000023307.15|membrane associated ring-CH-type finger 5
mm39_v1_chr5_-_110596352_110596385	0.0856124	AACACUG	ENSMUST00000069483.12|Fbrsl1|ENSMUSG00000043323.18|fibrosin-like 1	ENSMUST00000200293.2|Fbrsl1|ENSMUSG00000043323.18|fibrosin-like 1
mm39_v1_chr1_-_16589511_16589560	0.0821627	AACACUG	ENSMUST00000162751.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000027052.13|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000149320.9|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2
mm39_v1_chr17_+_3165232_3165257	0.0801324	AACACUG	ENSMUST00000076734.8|Scaf8|ENSMUSG00000046201.10|SR-related CTD-associated factor 8
mm39_v1_chr7_+_58878490_58878518	0.0797387	AACACUG	ENSMUST00000202945.4|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A	ENSMUST00000107537.5|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A
mm39_v1_chr10_+_19232281_19232312	0.0761311	AACACUG	ENSMUST00000053225.7|Olig3|ENSMUSG00000045591.7|oligodendrocyte transcription factor 3
mm39_v1_chr15_-_98729333_98729402	0.0727263	AACACUG	ENSMUST00000168846.3|Prkag1|ENSMUSG00000067713.8|protein kinase, AMP-activated, gamma 1 non-catalytic subunit
mm39_v1_chr10_+_20188207_20188238	0.0723216	AACACUG	ENSMUST00000092678.10|Bclaf1|ENSMUSG00000037608.17|BCL2-associated transcription factor 1	ENSMUST00000043881.12|Bclaf1|ENSMUSG00000037608.17|BCL2-associated transcription factor 1
mm39_v1_chr16_-_78373510_78373535	0.0674242	AACACUG	ENSMUST00000231973.2|D16Ertd472e|ENSMUSG00000022864.15|DNA segment, Chr 16, ERATO Doi 472, expressed	ENSMUST00000232528.2|D16Ertd472e|ENSMUSG00000022864.15|DNA segment, Chr 16, ERATO Doi 472, expressed	ENSMUST00000114220.9|D16Ertd472e|ENSMUSG00000022864.15|DNA segment, Chr 16, ERATO Doi 472, expressed
mm39_v1_chr11_-_106679312_106679358	0.0636181	AACACUG	ENSMUST00000021062.12|Ddx5|ENSMUSG00000020719.15|DEAD box helicase 5
mm39_v1_chr1_-_63153675_63153826	0.063529	AACACUG	ENSMUST00000097718.9|Ino80d|ENSMUSG00000040865.16|INO80 complex subunit D
mm39_v1_chr5_+_136067350_136067350	0.0632199	AACACUG	ENSMUST00000062606.8|Upk3b|ENSMUSG00000042985.8|uroplakin 3B
mm39_v1_chr11_+_105480796_105480857	0.0601952	AACACUG	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr19_+_47568041_47568164	0.0528535	AACACUG	ENSMUST00000026043.12|Slk|ENSMUSG00000025060.16|STE20-like kinase
mm39_v1_chr5_+_86952072_86952135	0.0523846	AACACUG	ENSMUST00000119339.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1	ENSMUST00000120498.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1
mm39_v1_chr5_+_108609087_108609107	0.0516064	AACACUG	ENSMUST00000112597.8|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3	ENSMUST00000046975.12|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3
mm39_v1_chr2_-_181101158_181101232	0.047838	AACACUG	ENSMUST00000155535.2|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46	ENSMUST00000029106.13|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46	ENSMUST00000087409.10|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46
mm39_v1_chr1_+_191638854_191638879	0.0450747	AACACUG	ENSMUST00000044954.7|Slc30a1|ENSMUSG00000037434.8|solute carrier family 30 (zinc transporter), member 1
mm39_v1_chr11_+_70591299_70591476	0.0442164	AACACUG	ENSMUST00000152618.9|Kif1c|ENSMUSG00000020821.18|kinesin family member 1C	ENSMUST00000102554.8|Kif1c|ENSMUSG00000020821.18|kinesin family member 1C	ENSMUST00000094499.11|Kif1c|ENSMUSG00000020821.18|kinesin family member 1C	ENSMUST00000072187.12|Kif1c|ENSMUSG00000020821.18|kinesin family member 1C	ENSMUST00000137119.3|Kif1c|ENSMUSG00000020821.18|kinesin family member 1C
mm39_v1_chr12_+_4967376_4967438	0.0388005	AACACUG	ENSMUST00000045664.7|Atad2b|ENSMUSG00000052812.6|ATPase family, AAA domain containing 2B
mm39_v1_chr2_-_35994072_35994085	0.0330952	AACACUG	ENSMUST00000112961.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112966.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6
mm39_v1_chr13_+_46822992_46823022	0.0329001	AACACUG	ENSMUST00000099547.4|Fam8a1|ENSMUSG00000069237.9|family with sequence similarity 8, member A1
mm39_v1_chr1_-_13442658_13442681	0.0294699	AACACUG	ENSMUST00000081713.11|Ncoa2|ENSMUSG00000005886.15|nuclear receptor coactivator 2
mm39_v1_chr3_+_63883527_63883556	0.0286269	AACACUG	ENSMUST00000029405.8|Gmps|ENSMUSG00000027823.10|guanine monophosphate synthetase
mm39_v1_chr17_-_59320257_59320367	0.0272493	AACACUG	ENSMUST00000174122.2|Nudt12|ENSMUSG00000024228.13|nudix (nucleoside diphosphate linked moiety X)-type motif 12	ENSMUST00000025065.12|Nudt12|ENSMUSG00000024228.13|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm39_v1_chr11_-_23615862_23615959	0.0230766	AACACUG	ENSMUST00000020523.4|Pex13|ENSMUSG00000020283.6|peroxisomal biogenesis factor 13
mm39_v1_chr6_+_30401864_30401997	0.0189013	AACACUG	ENSMUST00000068240.13|Klhdc10|ENSMUSG00000029775.15|kelch domain containing 10	ENSMUST00000068259.10|Klhdc10|ENSMUSG00000029775.15|kelch domain containing 10	ENSMUST00000132581.8|Klhdc10|ENSMUSG00000029775.15|kelch domain containing 10
mm39_v1_chr17_+_8384333_8384426	0.0187853	AACACUG	ENSMUST00000097419.10|Cep43|ENSMUSG00000069135.12|centrosomal protein 43	ENSMUST00000024636.15|Cep43|ENSMUSG00000069135.12|centrosomal protein 43
mm39_v1_chr3_-_84212069_84212116	0.0183605	AACACUG	ENSMUST00000107692.8|Trim2|ENSMUSG00000027993.17|tripartite motif-containing 2
mm39_v1_chr2_+_160487801_160487816	0.0179135	AACACUG	ENSMUST00000109468.3|Top1|ENSMUSG00000070544.7|topoisomerase (DNA) I
mm39_v1_chr1_-_92107971_92108063	0.016911	AACACUG	ENSMUST00000186002.3|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4	ENSMUST00000097644.9|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4
mm39_v1_chr11_+_115310963_115311008	0.0138814	AACACUG	ENSMUST00000106533.8|Kctd2|ENSMUSG00000016940.19|potassium channel tetramerisation domain containing 2	ENSMUST00000123345.2|Kctd2|ENSMUSG00000016940.19|potassium channel tetramerisation domain containing 2
mm39_v1_chr14_-_67309866_67309925	0.0111451	AACACUG	ENSMUST00000225380.2|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha	ENSMUST00000089230.7|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha
mm39_v1_chr9_-_96993169_96993214	0.0109942	AACACUG	ENSMUST00000085206.11|Slc25a36|ENSMUSG00000032449.14|solute carrier family 25, member 36
mm39_v1_chr11_+_16702203_16702215	0.00706033	AACACUG	ENSMUST00000102884.10|Egfr|ENSMUSG00000020122.17|epidermal growth factor receptor	ENSMUST00000020329.13|Egfr|ENSMUSG00000020122.17|epidermal growth factor receptor
mm39_v1_chr4_+_148675939_148676004	0.00567175	AACACUG	ENSMUST00000006611.9|Srm|ENSMUSG00000006442.11|spermidine synthase
mm39_v1_chr4_-_103072343_103072405	0.000930571	AACACUG	ENSMUST00000150285.8|Slc35d1|ENSMUSG00000028521.18|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm39_v1_chr17_-_28705082_28705123	0.000205404	AACACUG	ENSMUST00000079413.11|Fkbp5|ENSMUSG00000024222.18|FK506 binding protein 5
