mm39_v1_chr6_+_114259596_114259777	4.34996	AACAGUC	ENSMUST00000032454.8|Slc6a1|ENSMUSG00000030310.11|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm39_v1_chr17_-_45860580_45860603	4.11071	AACAGUC	ENSMUST00000180252.3|Tmem151b|ENSMUSG00000096847.3|transmembrane protein 151B
mm39_v1_chr7_-_78228116_78228157	2.23196	AACAGUC	ENSMUST00000206268.2|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3	ENSMUST00000039431.14|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3
mm39_v1_chr15_-_78004211_78004232	2.20357	AACAGUC	ENSMUST00000019290.3|Cacng2|ENSMUSG00000019146.3|calcium channel, voltage-dependent, gamma subunit 2
mm39_v1_chr15_+_38796539_38796539	2.13863	AACAGUC	ENSMUST00000163313.3|Baalc|ENSMUSG00000022296.11|brain and acute leukemia, cytoplasmic
mm39_v1_chr6_-_126717590_126717644	2.02191	AACAGUC	ENSMUST00000185333.2|Kcna6|ENSMUSG00000038077.8|potassium voltage-gated channel, shaker-related, subfamily, member 6
mm39_v1_chr10_-_121146940_121147094	1.91805	AACAGUC	ENSMUST00000064107.7|Tbc1d30|ENSMUSG00000052302.7|TBC1 domain family, member 30
mm39_v1_chr6_-_143892814_143892837	1.85608	AACAGUC	ENSMUST00000124233.7|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000144289.4|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000111748.8|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5
mm39_v1_chr3_+_107008867_107008883	1.82255	AACAGUC	ENSMUST00000038695.6|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr15_-_78602971_78602971	1.56331	AACAGUC	ENSMUST00000088592.6|Elfn2|ENSMUSG00000043460.8|leucine rich repeat and fibronectin type III, extracellular 2
mm39_v1_chr10_+_111000613_111000627	1.50661	AACAGUC	ENSMUST00000105275.9|Osbpl8|ENSMUSG00000020189.16|oxysterol binding protein-like 8
mm39_v1_chrX_+_92330102_92330128	1.41284	AACAGUC	ENSMUST00000046565.13|Arx|ENSMUSG00000035277.16|aristaless related homeobox	ENSMUST00000113947.6|Arx|ENSMUSG00000035277.16|aristaless related homeobox
mm39_v1_chr5_-_106844685_106844707	1.34827	AACAGUC	ENSMUST00000127434.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112696.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112698.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644
mm39_v1_chr13_-_105191403_105191438	1.34257	AACAGUC	ENSMUST00000063551.7|Rgs7bp|ENSMUSG00000021719.10|regulator of G-protein signalling 7 binding protein
mm39_v1_chr14_-_103584179_103584277	1.3352	AACAGUC	ENSMUST00000159855.8|Mycbp2|ENSMUSG00000033004.17|MYC binding protein 2, E3 ubiquitin protein ligase
mm39_v1_chr3_+_61269059_61269059	1.32718	AACAGUC	ENSMUST00000049064.4|Rap2b|ENSMUSG00000036894.4|RAP2B, member of RAS oncogene family
mm39_v1_chr4_+_101353742_101353845	1.2759	AACAGUC	ENSMUST00000154120.9|Dnajc6|ENSMUSG00000028528.18|DnaJ heat shock protein family (Hsp40) member C6	ENSMUST00000106930.8|Dnajc6|ENSMUSG00000028528.18|DnaJ heat shock protein family (Hsp40) member C6
mm39_v1_chr15_-_102425241_102425499	1.26762	AACAGUC	ENSMUST00000169162.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000023812.10|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000165174.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000169367.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000169377.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12
mm39_v1_chr15_+_101122069_101122114	1.23377	AACAGUC	ENSMUST00000000543.6|Tamalin|ENSMUSG00000000531.6|trafficking regulator and scaffold protein tamalin
mm39_v1_chr11_-_45835737_45835787	1.22756	AACAGUC	ENSMUST00000129820.8|Lsm11|ENSMUSG00000044847.14|U7 snRNP-specific Sm-like protein LSM11
mm39_v1_chr9_+_102988940_102989065	1.20105	AACAGUC	ENSMUST00000189134.2|Rab6b|ENSMUSG00000032549.8|RAB6B, member RAS oncogene family	ENSMUST00000035155.8|Rab6b|ENSMUSG00000032549.8|RAB6B, member RAS oncogene family
mm39_v1_chr17_-_11059172_11059198	1.18089	AACAGUC	ENSMUST00000041463.7|Pacrg|ENSMUSG00000037196.7|PARK2 co-regulated
mm39_v1_chr3_-_119576911_119577037	1.11504	AACAGUC	ENSMUST00000197464.5|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000198403.2|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000029780.12|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2
mm39_v1_chr2_-_73722874_73722900	1.1123	AACAGUC	ENSMUST00000136958.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112010.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000128531.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112017.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr18_-_43571345_43571371	1.10692	AACAGUC	ENSMUST00000121805.9|Dpysl3|ENSMUSG00000024501.21|dihydropyrimidinase-like 3
mm39_v1_chr2_+_116951855_116951880	1.07042	AACAGUC	ENSMUST00000028829.13|Spred1|ENSMUSG00000027351.15|sprouty protein with EVH-1 domain 1, related sequence
mm39_v1_chr4_+_48585135_48585187	1.0109	AACAGUC	ENSMUST00000030032.13|Tmeff1|ENSMUSG00000028347.15|transmembrane protein with EGF-like and two follistatin-like domains 1
mm39_v1_chr11_-_100363551_100363585	0.995665	AACAGUC	ENSMUST00000056665.4|Klhl11|ENSMUSG00000048732.6|kelch-like 11
mm39_v1_chr6_-_112924205_112924239	0.985282	AACAGUC	ENSMUST00000088373.11|Srgap3|ENSMUSG00000030257.17|SLIT-ROBO Rho GTPase activating protein 3
mm39_v1_chr8_-_70892204_70892261	0.982271	AACAGUC	ENSMUST00000076615.6|Crtc1|ENSMUSG00000003575.14|CREB regulated transcription coactivator 1
mm39_v1_chr11_+_3280401_3280541	0.97194	AACAGUC	ENSMUST00000045153.11|Pik3ip1|ENSMUSG00000034614.15|phosphoinositide-3-kinase interacting protein 1
mm39_v1_chr15_-_37792635_37792814	0.911137	AACAGUC	ENSMUST00000090150.11|Ncald|ENSMUSG00000051359.16|neurocalcin delta	ENSMUST00000150453.2|Ncald|ENSMUSG00000051359.16|neurocalcin delta
mm39_v1_chr2_+_57127665_57127741	0.906073	AACAGUC	ENSMUST00000169687.8|Gpd2|ENSMUSG00000026827.13|glycerol phosphate dehydrogenase 2, mitochondrial
mm39_v1_chr1_+_134487928_134487971	0.895149	AACAGUC	ENSMUST00000112198.3|Kdm5b|ENSMUSG00000042207.18|lysine (K)-specific demethylase 5B
mm39_v1_chr2_+_65451100_65451170	0.889849	AACAGUC	ENSMUST00000144254.6|Scn2a|ENSMUSG00000075318.14|sodium channel, voltage-gated, type II, alpha	ENSMUST00000028377.14|Scn2a|ENSMUSG00000075318.14|sodium channel, voltage-gated, type II, alpha
mm39_v1_chr18_-_72484126_72484140	0.851073	AACAGUC	ENSMUST00000114943.11|Dcc|ENSMUSG00000060534.17|deleted in colorectal carcinoma
mm39_v1_chrX_-_94209913_94210145	0.845981	AACAGUC	ENSMUST00000113873.9|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000113876.9|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000199920.5|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000113885.8|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000113883.8|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000196012.2|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000182001.8|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000113878.8|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000113882.8|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000182562.2|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9
mm39_v1_chr8_+_125739724_125739745	0.827943	AACAGUC	ENSMUST00000075896.7|Tsnax|ENSMUSG00000056820.8|translin-associated factor X
mm39_v1_chr9_-_81515865_81515892	0.789193	AACAGUC	ENSMUST00000183482.2|Htr1b|ENSMUSG00000049511.6|5-hydroxytryptamine (serotonin) receptor 1B
mm39_v1_chr13_+_89687915_89687915	0.773237	AACAGUC	ENSMUST00000022108.9|Hapln1|ENSMUSG00000021613.10|hyaluronan and proteoglycan link protein 1
mm39_v1_chr2_+_173918715_173918859	0.761078	AACAGUC	ENSMUST00000087908.10|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000044638.13|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000156054.2|Stx16|ENSMUSG00000027522.16|syntaxin 16
mm39_v1_chr3_-_110050312_110050326	0.751584	AACAGUC	ENSMUST00000156177.9|Ntng1|ENSMUSG00000059857.16|netrin G1
mm39_v1_chr16_+_6166982_6167008	0.749063	AACAGUC	ENSMUST00000056416.9|Rbfox1|ENSMUSG00000008658.17|RNA binding protein, fox-1 homolog (C. elegans) 1
mm39_v1_chr5_+_76988444_76988484	0.728234	AACAGUC	ENSMUST00000120639.9|Cracd|ENSMUSG00000036377.20|capping protein inhibiting regulator of actin	ENSMUST00000163347.8|Cracd|ENSMUSG00000036377.20|capping protein inhibiting regulator of actin	ENSMUST00000121851.2|Cracd|ENSMUSG00000036377.20|capping protein inhibiting regulator of actin
mm39_v1_chr7_+_63094489_63094510	0.712664	AACAGUC	ENSMUST00000058476.14|Otud7a|ENSMUSG00000033510.15|OTU domain containing 7A
mm39_v1_chr6_+_120341055_120341124	0.693014	AACAGUC	ENSMUST00000005108.10|Kdm5a|ENSMUSG00000030180.16|lysine (K)-specific demethylase 5A
mm39_v1_chr10_-_53627201_53627219	0.681003	AACAGUC	ENSMUST00000020003.15|Fam184a|ENSMUSG00000019856.15|family with sequence similarity 184, member A
mm39_v1_chr1_+_152830720_152830804	0.679249	AACAGUC	ENSMUST00000043313.15|Nmnat2|ENSMUSG00000042751.15|nicotinamide nucleotide adenylyltransferase 2	ENSMUST00000186621.2|Nmnat2|ENSMUSG00000042751.15|nicotinamide nucleotide adenylyltransferase 2
mm39_v1_chr11_+_77107006_77107113	0.660773	AACAGUC	ENSMUST00000156488.8|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2	ENSMUST00000037912.12|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2
mm39_v1_chr9_+_32027335_32027432	0.64803	AACAGUC	ENSMUST00000174641.8|Arhgap32|ENSMUSG00000041444.15|Rho GTPase activating protein 32
mm39_v1_chr12_-_31549538_31549615	0.638977	AACAGUC	ENSMUST00000064240.14|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000185739.8|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000188326.3|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000101499.10|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000085487.12|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1
mm39_v1_chr12_+_117480099_117480148	0.633827	AACAGUC	ENSMUST00000109691.4|Rapgef5|ENSMUSG00000041992.10|Rap guanine nucleotide exchange factor (GEF) 5
mm39_v1_chr14_+_63673843_63673974	0.623548	AACAGUC	ENSMUST00000121288.2|Fam167a|ENSMUSG00000035095.12|family with sequence similarity 167, member A
mm39_v1_chr11_-_78588194_78588205	0.620411	AACAGUC	ENSMUST00000142739.8|Nlk|ENSMUSG00000017376.16|nemo like kinase
mm39_v1_chr2_+_54326329_54326434	0.614236	AACAGUC	ENSMUST00000112636.8|Galnt13|ENSMUSG00000060988.13|polypeptide N-acetylgalactosaminyltransferase 13	ENSMUST00000112635.8|Galnt13|ENSMUSG00000060988.13|polypeptide N-acetylgalactosaminyltransferase 13	ENSMUST00000112634.8|Galnt13|ENSMUSG00000060988.13|polypeptide N-acetylgalactosaminyltransferase 13
mm39_v1_chr2_-_134396268_134396289	0.607633	AACAGUC	ENSMUST00000028704.3|Hao1|ENSMUSG00000027261.3|hydroxyacid oxidase 1, liver
mm39_v1_chr17_+_9020522_9020559	0.598167	AACAGUC	ENSMUST00000089085.10|Pde10a|ENSMUSG00000023868.18|phosphodiesterase 10A
mm39_v1_chr7_-_126620378_126620387	0.596501	AACAGUC	ENSMUST00000159916.5|Prrt2|ENSMUSG00000045114.11|proline-rich transmembrane protein 2
mm39_v1_chr1_-_172034354_172034371	0.592303	AACAGUC	ENSMUST00000013842.12|Pea15a|ENSMUSG00000013698.13|phosphoprotein enriched in astrocytes 15A	ENSMUST00000111247.8|Pea15a|ENSMUSG00000013698.13|phosphoprotein enriched in astrocytes 15A
mm39_v1_chr3_+_88439616_88439703	0.591293	AACAGUC	ENSMUST00000172699.2|Mex3a|ENSMUSG00000074480.5|mex3 RNA binding family member A
mm39_v1_chr5_+_118114826_118114868	0.581699	AACAGUC	ENSMUST00000035579.10|Fbxo21|ENSMUSG00000032898.10|F-box protein 21
mm39_v1_chr5_-_135423353_135423412	0.534186	AACAGUC	ENSMUST00000111171.6|Pom121|ENSMUSG00000053293.10|nuclear pore membrane protein 121
mm39_v1_chr12_-_15866763_15866923	0.533208	AACAGUC	ENSMUST00000020922.8|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2	ENSMUST00000221215.2|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2	ENSMUST00000221518.2|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2
mm39_v1_chr11_+_104122216_104122279	0.522194	AACAGUC	ENSMUST00000106992.10|Mapt|ENSMUSG00000018411.18|microtubule-associated protein tau
mm39_v1_chr19_-_18978463_18978483	0.521839	AACAGUC	ENSMUST00000040153.15|Rorb|ENSMUSG00000036192.16|RAR-related orphan receptor beta	ENSMUST00000112828.8|Rorb|ENSMUSG00000036192.16|RAR-related orphan receptor beta
mm39_v1_chr19_-_10217968_10218125	0.521361	AACAGUC	ENSMUST00000189897.2|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000186056.7|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000088013.12|Myrf|ENSMUSG00000036098.16|myelin regulatory factor
mm39_v1_chr4_+_83443777_83443851	0.508308	AACAGUC	ENSMUST00000053414.13|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171	ENSMUST00000231339.2|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171	ENSMUST00000126429.8|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171
mm39_v1_chr9_-_108067552_108067617	0.500433	AACAGUC	ENSMUST00000035208.14|Bsn|ENSMUSG00000032589.15|bassoon
mm39_v1_chr2_-_65397809_65397839	0.47568	AACAGUC	ENSMUST00000066432.12|Scn3a|ENSMUSG00000057182.16|sodium channel, voltage-gated, type III, alpha
mm39_v1_chr2_+_121786444_121786498	0.467357	AACAGUC	ENSMUST00000036647.13|Ctdspl2|ENSMUSG00000033411.17|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm39_v1_chr18_+_35695199_35695313	0.442668	AACAGUC	ENSMUST00000236860.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000166793.10|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237780.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000236507.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000235960.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237061.2|Matr3|ENSMUSG00000037236.17|matrin 3
mm39_v1_chr13_+_88969591_88969639	0.440177	AACAGUC	ENSMUST00000118731.8|Edil3|ENSMUSG00000034488.15|EGF-like repeats and discoidin I-like domains 3	ENSMUST00000081769.13|Edil3|ENSMUSG00000034488.15|EGF-like repeats and discoidin I-like domains 3
mm39_v1_chr18_+_52748978_52749068	0.430324	AACAGUC	ENSMUST00000072666.4|Zfp474|ENSMUSG00000046886.7|zinc finger protein 474	ENSMUST00000209270.2|Zfp474|ENSMUSG00000046886.7|zinc finger protein 474
mm39_v1_chr19_+_36903471_36903541	0.425454	AACAGUC	ENSMUST00000099494.4|Btaf1|ENSMUSG00000040565.9|B-TFIID TATA-box binding protein associated factor 1
mm39_v1_chr2_-_66240408_66240478	0.423391	AACAGUC	ENSMUST00000112366.8|Scn1a|ENSMUSG00000064329.14|sodium channel, voltage-gated, type I, alpha
mm39_v1_chr11_-_115918784_115918826	0.412447	AACAGUC	ENSMUST00000106454.8|H3f3b|ENSMUSG00000016559.15|H3.3 histone B
mm39_v1_chr13_-_107158535_107158652	0.411547	AACAGUC	ENSMUST00000117539.8|Kif2a|ENSMUSG00000021693.21|kinesin family member 2A	ENSMUST00000122233.8|Kif2a|ENSMUSG00000021693.21|kinesin family member 2A	ENSMUST00000022204.16|Kif2a|ENSMUSG00000021693.21|kinesin family member 2A	ENSMUST00000159772.8|Kif2a|ENSMUSG00000021693.21|kinesin family member 2A
mm39_v1_chr15_+_66449385_66449487	0.411532	AACAGUC	ENSMUST00000230882.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000048188.10|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000230948.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000229160.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1
mm39_v1_chr3_+_28835425_28835493	0.411206	AACAGUC	ENSMUST00000060500.9|Eif5a2|ENSMUSG00000050192.9|eukaryotic translation initiation factor 5A2
mm39_v1_chr10_-_120815232_120815279	0.403774	AACAGUC	ENSMUST00000119944.8|Lemd3|ENSMUSG00000048661.15|LEM domain containing 3	ENSMUST00000119093.2|Lemd3|ENSMUSG00000048661.15|LEM domain containing 3
mm39_v1_chr10_+_40225272_40225385	0.395459	AACAGUC	ENSMUST00000044672.11|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19	ENSMUST00000095743.4|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19
mm39_v1_chr8_+_14961663_14961677	0.390224	AACAGUC	ENSMUST00000084207.12|Arhgef10|ENSMUSG00000071176.11|Rho guanine nucleotide exchange factor (GEF) 10
mm39_v1_chr5_-_33011530_33011600	0.386695	AACAGUC	ENSMUST00000130134.3|Prr14l|ENSMUSG00000054280.15|proline rich 14-like	ENSMUST00000120129.9|Prr14l|ENSMUSG00000054280.15|proline rich 14-like
mm39_v1_chr10_-_45346297_45346386	0.382101	AACAGUC	ENSMUST00000079390.7|Lin28b|ENSMUSG00000063804.9|lin-28 homolog B (C. elegans)
mm39_v1_chr5_+_137517140_137517140	0.380459	AACAGUC	ENSMUST00000031727.10|Gigyf1|ENSMUSG00000029714.12|GRB10 interacting GYF protein 1
mm39_v1_chr4_+_13743424_13743478	0.377837	AACAGUC	ENSMUST00000006761.10|Runx1t1|ENSMUSG00000006586.16|RUNX1 translocation partner 1
mm39_v1_chr2_-_130480014_130480033	0.377393	AACAGUC	ENSMUST00000089561.10|Lzts3|ENSMUSG00000037703.15|leucine zipper, putative tumor suppressor family member 3	ENSMUST00000110260.8|Lzts3|ENSMUSG00000037703.15|leucine zipper, putative tumor suppressor family member 3
mm39_v1_chr5_+_108213608_108213634	0.363125	AACAGUC	ENSMUST00000081567.11|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000170319.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000112626.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2
mm39_v1_chr11_+_50267808_50267832	0.363016	AACAGUC	ENSMUST00000109142.8|Hnrnph1|ENSMUSG00000007850.17|heterogeneous nuclear ribonucleoprotein H1
mm39_v1_chr14_-_31299275_31299340	0.361189	AACAGUC	ENSMUST00000112027.9|Colq|ENSMUSG00000057606.15|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
mm39_v1_chr18_-_36330367_36330433	0.351632	AACAGUC	ENSMUST00000115713.9|Nrg2|ENSMUSG00000060275.15|neuregulin 2
mm39_v1_chr1_-_64160557_64160650	0.343265	AACAGUC	ENSMUST00000055001.10|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)	ENSMUST00000114086.8|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chr13_+_104424359_104424432	0.342576	AACAGUC	ENSMUST00000065766.7|Adamts6|ENSMUSG00000046169.11|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm39_v1_chr12_+_59113659_59113670	0.339544	AACAGUC	ENSMUST00000021381.6|Pnn|ENSMUSG00000020994.6|pinin
mm39_v1_chr4_+_17853452_17853474	0.338121	AACAGUC	ENSMUST00000029881.10|Mmp16|ENSMUSG00000028226.16|matrix metallopeptidase 16
mm39_v1_chr8_-_105169621_105169679	0.332265	AACAGUC	ENSMUST00000041769.8|Dync1li2|ENSMUSG00000035770.9|dynein, cytoplasmic 1 light intermediate chain 2
mm39_v1_chr6_+_143112936_143113026	0.32694	AACAGUC	ENSMUST00000204947.3|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1	ENSMUST00000032413.7|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1	ENSMUST00000205256.2|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1
mm39_v1_chr5_+_99002293_99002325	0.319674	AACAGUC	ENSMUST00000031278.6|Bmp3|ENSMUSG00000029335.6|bone morphogenetic protein 3	ENSMUST00000200388.2|Bmp3|ENSMUSG00000029335.6|bone morphogenetic protein 3
mm39_v1_chr1_+_5153300_5153388	0.303956	AACAGUC	ENSMUST00000044369.13|Atp6v1h|ENSMUSG00000033793.13|ATPase, H+ transporting, lysosomal V1 subunit H	ENSMUST00000194676.6|Atp6v1h|ENSMUSG00000033793.13|ATPase, H+ transporting, lysosomal V1 subunit H	ENSMUST00000192029.6|Atp6v1h|ENSMUSG00000033793.13|ATPase, H+ transporting, lysosomal V1 subunit H	ENSMUST00000192698.3|Atp6v1h|ENSMUSG00000033793.13|ATPase, H+ transporting, lysosomal V1 subunit H
mm39_v1_chr12_+_4183032_4183127	0.302302	AACAGUC	ENSMUST00000124505.8|Adcy3|ENSMUSG00000020654.16|adenylate cyclase 3
mm39_v1_chr10_+_82821304_82821338	0.297719	AACAGUC	ENSMUST00000040110.8|Chst11|ENSMUSG00000034612.8|carbohydrate sulfotransferase 11
mm39_v1_chr14_-_47059694_47059743	0.291884	AACAGUC	ENSMUST00000111817.8|Gmfb|ENSMUSG00000062014.14|glia maturation factor, beta	ENSMUST00000079314.12|Gmfb|ENSMUSG00000062014.14|glia maturation factor, beta
mm39_v1_chr6_+_149310471_149310593	0.291187	AACAGUC	ENSMUST00000086829.11|Bicd1|ENSMUSG00000003452.16|BICD cargo adaptor 1	ENSMUST00000111513.9|Bicd1|ENSMUSG00000003452.16|BICD cargo adaptor 1
mm39_v1_chr12_-_27392356_27392573	0.286321	AACAGUC	ENSMUST00000079063.7|Sox11|ENSMUSG00000063632.7|SRY (sex determining region Y)-box 11
mm39_v1_chr15_+_96185399_96185487	0.262857	AACAGUC	ENSMUST00000134985.9|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)	ENSMUST00000096250.5|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)
mm39_v1_chr8_-_74080101_74080180	0.25728	AACAGUC	ENSMUST00000119826.7|Large1|ENSMUSG00000004383.19|LARGE xylosyl- and glucuronyltransferase 1	ENSMUST00000212459.2|Large1|ENSMUSG00000004383.19|LARGE xylosyl- and glucuronyltransferase 1
mm39_v1_chr1_+_52669849_52669916	0.253857	AACAGUC	ENSMUST00000165859.8|Nemp2|ENSMUSG00000043015.16|nuclear envelope integral membrane protein 2
mm39_v1_chr5_+_117552042_117552076	0.245561	AACAGUC	ENSMUST00000180430.2|Ksr2|ENSMUSG00000061578.9|kinase suppressor of ras 2
mm39_v1_chr18_+_35731658_35731729	0.239854	AACAGUC	ENSMUST00000041314.17|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000236666.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000236020.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000235400.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2
mm39_v1_chr2_+_166647426_166647525	0.236903	AACAGUC	ENSMUST00000099078.10|Arfgef2|ENSMUSG00000074582.11|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm39_v1_chr2_-_157870341_157870361	0.213495	AACAGUC	ENSMUST00000029179.11|Tti1|ENSMUSG00000027650.13|TELO2 interacting protein 1
mm39_v1_chr5_+_147367237_147367355	0.210703	AACAGUC	ENSMUST00000176600.8|Pan3|ENSMUSG00000029647.16|PAN3 poly(A) specific ribonuclease subunit
mm39_v1_chr16_+_37688744_37688844	0.209641	AACAGUC	ENSMUST00000078717.7|Lrrc58|ENSMUSG00000034158.10|leucine rich repeat containing 58
mm39_v1_chr8_+_13389656_13389674	0.209156	AACAGUC	ENSMUST00000210165.2|Tfdp1|ENSMUSG00000038482.12|transcription factor Dp 1	ENSMUST00000170909.2|Tfdp1|ENSMUSG00000038482.12|transcription factor Dp 1
mm39_v1_chr18_+_10725532_10725564	0.208977	AACAGUC	ENSMUST00000052838.11|Mib1|ENSMUSG00000024294.15|mindbomb E3 ubiquitin protein ligase 1
mm39_v1_chr17_-_46593917_46593952	0.204076	AACAGUC	ENSMUST00000225359.2|Tjap1|ENSMUSG00000012296.17|tight junction associated protein 1	ENSMUST00000225080.2|Tjap1|ENSMUSG00000012296.17|tight junction associated protein 1	ENSMUST00000225943.2|Tjap1|ENSMUSG00000012296.17|tight junction associated protein 1	ENSMUST00000012440.14|Tjap1|ENSMUSG00000012296.17|tight junction associated protein 1	ENSMUST00000164342.10|Tjap1|ENSMUSG00000012296.17|tight junction associated protein 1	ENSMUST00000180283.2|Tjap1|ENSMUSG00000012296.17|tight junction associated protein 1
mm39_v1_chr11_-_95200382_95200428	0.200244	AACAGUC	ENSMUST00000092766.12|Kat7|ENSMUSG00000038909.17|K(lysine) acetyltransferase 7	ENSMUST00000072621.12|Kat7|ENSMUSG00000038909.17|K(lysine) acetyltransferase 7
mm39_v1_chr2_+_154278357_154278455	0.1939	AACAGUC	ENSMUST00000109725.8|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000099178.10|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000045270.15|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000109724.2|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2
mm39_v1_chr2_-_57004933_57005050	0.189827	AACAGUC	ENSMUST00000028166.9|Nr4a2|ENSMUSG00000026826.14|nuclear receptor subfamily 4, group A, member 2
mm39_v1_chr2_-_33321306_33321359	0.186287	AACAGUC	ENSMUST00000113158.8|Zbtb34|ENSMUSG00000068966.11|zinc finger and BTB domain containing 34
mm39_v1_chr4_+_108477117_108477195	0.176593	AACAGUC	ENSMUST00000030320.13|Cc2d1b|ENSMUSG00000028582.15|coiled-coil and C2 domain containing 1B
mm39_v1_chrX_-_73129195_73129296	0.173564	AACAGUC	ENSMUST00000140399.3|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000123362.8|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000100750.10|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000033770.13|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2
mm39_v1_chr12_+_40495951_40496015	0.173218	AACAGUC	ENSMUST00000037488.8|Dock4|ENSMUSG00000035954.11|dedicator of cytokinesis 4
mm39_v1_chr4_+_136038263_136038296	0.17274	AACAGUC	ENSMUST00000105850.8|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R	ENSMUST00000148843.10|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr2_-_20973692_20973768	0.162615	AACAGUC	ENSMUST00000114594.8|Arhgap21|ENSMUSG00000036591.17|Rho GTPase activating protein 21
mm39_v1_chr17_+_64203017_64203059	0.162298	AACAGUC	ENSMUST00000000129.14|Fer|ENSMUSG00000000127.16|fer (fms/fps related) protein kinase
mm39_v1_chr12_-_50695881_50696064	0.16064	AACAGUC	ENSMUST00000002765.9|Prkd1|ENSMUSG00000002688.9|protein kinase D1
mm39_v1_chr4_+_108317197_108317227	0.159142	AACAGUC	ENSMUST00000097925.9|Tut4|ENSMUSG00000034610.15|terminal uridylyl transferase 4
mm39_v1_chr6_+_140568366_140568389	0.152454	AACAGUC	ENSMUST00000032359.15|Aebp2|ENSMUSG00000030232.19|AE binding protein 2
mm39_v1_chr3_+_87524848_87524920	0.151215	AACAGUC	ENSMUST00000039476.15|Arhgef11|ENSMUSG00000041977.19|Rho guanine nucleotide exchange factor (GEF) 11	ENSMUST00000129113.8|Arhgef11|ENSMUSG00000041977.19|Rho guanine nucleotide exchange factor (GEF) 11
mm39_v1_chr16_+_17051423_17051528	0.150128	AACAGUC	ENSMUST00000090190.14|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2	ENSMUST00000232426.2|Gm49573|ENSMUSG00000116743.2|predicted gene, 49573	ENSMUST00000232082.2|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2
mm39_v1_chr17_+_25407352_25407392	0.149902	AACAGUC	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr5_+_73648368_73648452	0.136393	AACAGUC	ENSMUST00000113558.8|Dcun1d4|ENSMUSG00000051674.16|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	ENSMUST00000063882.12|Dcun1d4|ENSMUSG00000051674.16|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm39_v1_chr7_-_98305737_98305808	0.134566	AACAGUC	ENSMUST00000205911.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000038359.6|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000206611.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000206619.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor
mm39_v1_chr13_+_45660905_45660994	0.133943	AACAGUC	ENSMUST00000000260.13|Gmpr|ENSMUSG00000000253.14|guanosine monophosphate reductase
mm39_v1_chr2_+_31462780_31462841	0.132848	AACAGUC	ENSMUST00000137889.7|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000194386.6|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000055244.13|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3
mm39_v1_chr5_+_108609087_108609107	0.128032	AACAGUC	ENSMUST00000112597.8|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3	ENSMUST00000046975.12|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3
mm39_v1_chr14_-_20438890_20438980	0.122198	AACAGUC	ENSMUST00000022345.7|Dnajc9|ENSMUSG00000021811.8|DnaJ heat shock protein family (Hsp40) member C9
mm39_v1_chrX_-_166906307_166906330	0.115604	AACAGUC	ENSMUST00000112149.9|Frmpd4|ENSMUSG00000049176.17|FERM and PDZ domain containing 4
mm39_v1_chr16_+_37909363_37909426	0.11415	AACAGUC	ENSMUST00000023507.13|Gsk3b|ENSMUSG00000022812.15|glycogen synthase kinase 3 beta
mm39_v1_chr4_+_155575792_155575877	0.113291	AACAGUC	ENSMUST00000165335.8|Gnb1|ENSMUSG00000029064.16|guanine nucleotide binding protein (G protein), beta 1	ENSMUST00000105616.10|Gnb1|ENSMUSG00000029064.16|guanine nucleotide binding protein (G protein), beta 1	ENSMUST00000030940.14|Gnb1|ENSMUSG00000029064.16|guanine nucleotide binding protein (G protein), beta 1
mm39_v1_chr15_-_53765869_53765926	0.112328	AACAGUC	ENSMUST00000078673.14|Samd12|ENSMUSG00000058656.14|sterile alpha motif domain containing 12
mm39_v1_chr12_+_110452222_110452293	0.0848377	AACAGUC	ENSMUST00000084985.11|Ppp2r5c|ENSMUSG00000017843.15|protein phosphatase 2, regulatory subunit B', gamma	ENSMUST00000221074.2|Ppp2r5c|ENSMUSG00000017843.15|protein phosphatase 2, regulatory subunit B', gamma
mm39_v1_chr10_-_40759307_40759307	0.0822608	AACAGUC	ENSMUST00000044166.9|Cdc40|ENSMUSG00000038446.9|cell division cycle 40
mm39_v1_chr9_+_118335294_118335357	0.0821592	AACAGUC	ENSMUST00000084820.6|Golga4|ENSMUSG00000038708.11|golgi autoantigen, golgin subfamily a, 4
mm39_v1_chr1_-_16727067_16727121	0.0820729	AACAGUC	ENSMUST00000188641.7|Eloc|ENSMUSG00000079658.10|elongin C
mm39_v1_chr11_-_98040377_98040446	0.0786089	AACAGUC	ENSMUST00000103143.10|Fbxl20|ENSMUSG00000020883.19|F-box and leucine-rich repeat protein 20
mm39_v1_chr2_-_131194754_131194806	0.0777081	AACAGUC	ENSMUST00000059372.11|Rnf24|ENSMUSG00000048911.16|ring finger protein 24
mm39_v1_chr7_-_67022520_67022609	0.0764283	AACAGUC	ENSMUST00000156690.8|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000107476.8|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000076325.12|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000032776.15|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000133074.2|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A
mm39_v1_chr1_+_127701901_127701975	0.073093	AACAGUC	ENSMUST00000112570.2|Ccnt2|ENSMUSG00000026349.15|cyclin T2	ENSMUST00000027587.15|Ccnt2|ENSMUSG00000026349.15|cyclin T2
mm39_v1_chr11_-_96668318_96668385	0.072828	AACAGUC	ENSMUST00000127375.2|Snx11|ENSMUSG00000020876.15|sorting nexin 11	ENSMUST00000021246.9|Snx11|ENSMUSG00000020876.15|sorting nexin 11	ENSMUST00000107661.10|Snx11|ENSMUSG00000020876.15|sorting nexin 11
mm39_v1_chr10_-_20600797_20600824	0.0717586	AACAGUC	ENSMUST00000020165.14|Pde7b|ENSMUSG00000019990.16|phosphodiesterase 7B
mm39_v1_chr4_+_126915104_126915133	0.0638889	AACAGUC	ENSMUST00000030623.8|Sfpq|ENSMUSG00000028820.14|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm39_v1_chr14_-_45556018_45556036	0.0625289	AACAGUC	ENSMUST00000022378.9|Ero1a|ENSMUSG00000021831.10|endoplasmic reticulum oxidoreductase 1 alpha
mm39_v1_chr10_+_115220826_115220927	0.0611668	AACAGUC	ENSMUST00000036044.9|Zfc3h1|ENSMUSG00000034163.11|zinc finger, C3H1-type containing
mm39_v1_chr10_-_117212860_117212883	0.0580204	AACAGUC	ENSMUST00000069168.13|Cpsf6|ENSMUSG00000055531.13|cleavage and polyadenylation specific factor 6	ENSMUST00000176686.8|Cpsf6|ENSMUSG00000055531.13|cleavage and polyadenylation specific factor 6
mm39_v1_chr3_+_96011810_96011883	0.0552638	AACAGUC	ENSMUST00000132980.8|Otud7b|ENSMUSG00000038495.15|OTU domain containing 7B	ENSMUST00000138206.8|Otud7b|ENSMUSG00000038495.15|OTU domain containing 7B	ENSMUST00000090785.9|Otud7b|ENSMUSG00000038495.15|OTU domain containing 7B	ENSMUST00000035519.12|Otud7b|ENSMUSG00000038495.15|OTU domain containing 7B
mm39_v1_chr12_-_46865709_46865720	0.0489298	AACAGUC	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr4_-_14621805_14621819	0.0448164	AACAGUC	ENSMUST00000042221.14|Slc26a7|ENSMUSG00000040569.14|solute carrier family 26, member 7
mm39_v1_chr11_+_59839032_59839090	0.0391837	AACAGUC	ENSMUST00000081980.7|Med9|ENSMUSG00000061650.7|mediator complex subunit 9
mm39_v1_chr12_-_83643964_83644020	0.0377597	AACAGUC	ENSMUST00000048319.6|Zfyve1|ENSMUSG00000042628.9|zinc finger, FYVE domain containing 1
mm39_v1_chr16_+_11140740_11140775	0.033059	AACAGUC	ENSMUST00000180792.8|Snx29|ENSMUSG00000071669.15|sorting nexin 29
mm39_v1_chr9_+_70450130_70450152	0.0316674	AACAGUC	ENSMUST00000049263.9|Sltm|ENSMUSG00000032212.11|SAFB-like, transcription modulator
mm39_v1_chr16_+_22926504_22926511	0.0307801	AACAGUC	ENSMUST00000187168.7|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2	ENSMUST00000232287.2|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2	ENSMUST00000077605.12|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2
mm39_v1_chr18_+_35904541_35904655	0.0268008	AACAGUC	ENSMUST00000170693.9|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A	ENSMUST00000237984.2|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A	ENSMUST00000167406.2|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A
mm39_v1_chr13_+_14787819_14787860	0.023267	AACAGUC	ENSMUST00000170836.4|Psma2|ENSMUSG00000015671.12|proteasome subunit alpha 2
mm39_v1_chr6_+_63232955_63233024	0.0191403	AACAGUC	ENSMUST00000095852.5|Grid2|ENSMUSG00000071424.11|glutamate receptor, ionotropic, delta 2
mm39_v1_chr19_-_29783389_29783389	0.0153106	AACAGUC	ENSMUST00000177155.8|9930021J03Rik|ENSMUSG00000046138.16|RIKEN cDNA 9930021J03 gene
mm39_v1_chr5_+_115149170_115149269	0.010413	AACAGUC	ENSMUST00000031530.9|Sppl3|ENSMUSG00000029550.12|signal peptide peptidase 3
mm39_v1_chr3_-_19217174_19217249	0.00946655	AACAGUC	ENSMUST00000029125.10|Armc1|ENSMUSG00000027599.10|armadillo repeat containing 1
mm39_v1_chr16_+_16801246_16801278	0.00176037	AACAGUC	ENSMUST00000232611.2|Mapk1|ENSMUSG00000063358.18|mitogen-activated protein kinase 1	ENSMUST00000069107.14|Mapk1|ENSMUSG00000063358.18|mitogen-activated protein kinase 1
