mm39_v1_chr8_+_55407872_55407889	12.9407	AAUACUG	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr2_+_136555364_136555412	10.5352	AAUACUG	ENSMUST00000028727.11|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25	ENSMUST00000110098.4|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25
mm39_v1_chr3_+_7431717_7431730	9.47559	AAUACUG	ENSMUST00000192468.2|Pkia|ENSMUSG00000027499.13|protein kinase inhibitor, alpha	ENSMUST00000028999.12|Pkia|ENSMUSG00000027499.13|protein kinase inhibitor, alpha
mm39_v1_chr2_-_148574353_148574387	9.04783	AAUACUG	ENSMUST00000028926.13|Napb|ENSMUSG00000027438.15|N-ethylmaleimide sensitive fusion protein attachment protein beta
mm39_v1_chr9_-_53882530_53882632	8.77262	AAUACUG	ENSMUST00000048409.14|Elmod1|ENSMUSG00000041986.17|ELMO/CED-12 domain containing 1
mm39_v1_chr5_+_37025810_37025914	8.6098	AAUACUG	ENSMUST00000031003.11|Ppp2r2c|ENSMUSG00000029120.11|protein phosphatase 2, regulatory subunit B, gamma
mm39_v1_chr1_+_66214445_66214508	8.18506	AAUACUG	ENSMUST00000114017.8|Map2|ENSMUSG00000015222.19|microtubule-associated protein 2	ENSMUST00000114015.8|Map2|ENSMUSG00000015222.19|microtubule-associated protein 2
mm39_v1_chr6_+_114259596_114259777	8.1774	AAUACUG	ENSMUST00000032454.8|Slc6a1|ENSMUSG00000030310.11|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm39_v1_chr6_+_114108190_114108208	8.11124	AAUACUG	ENSMUST00000032451.9|Slc6a11|ENSMUSG00000030307.9|solute carrier family 6 (neurotransmitter transporter, GABA), member 11
mm39_v1_chr13_+_110531571_110531591	8.05187	AAUACUG	ENSMUST00000022212.9|Plk2|ENSMUSG00000021701.9|polo like kinase 2
mm39_v1_chr3_-_152687877_152687888	8.01971	AAUACUG	ENSMUST00000044278.6|St6galnac5|ENSMUSG00000039037.6|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
mm39_v1_chr5_+_142946098_142946131	7.92599	AAUACUG	ENSMUST00000031565.15|Fscn1|ENSMUSG00000029581.15|fascin actin-bundling protein 1	ENSMUST00000198017.5|Fscn1|ENSMUSG00000029581.15|fascin actin-bundling protein 1
mm39_v1_chr1_+_50966670_50966702	7.8194	AAUACUG	ENSMUST00000081851.4|Tmeff2|ENSMUSG00000026109.15|transmembrane protein with EGF-like and two follistatin-like domains 2
mm39_v1_chr4_+_102617495_102617722	7.72746	AAUACUG	ENSMUST00000072481.12|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000156596.8|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000080728.13|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000106882.9|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1
mm39_v1_chr2_+_102488985_102489014	7.44166	AAUACUG	ENSMUST00000080210.10|Slc1a2|ENSMUSG00000005089.16|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm39_v1_chr11_+_90140294_90140312	6.78982	AAUACUG	ENSMUST00000004050.7|Mmd|ENSMUSG00000003948.18|monocyte to macrophage differentiation-associated
mm39_v1_chr5_+_135052336_135052363	6.73379	AAUACUG	ENSMUST00000005509.11|Stx1a|ENSMUSG00000007207.11|syntaxin 1A (brain)	ENSMUST00000201008.4|Stx1a|ENSMUSG00000007207.11|syntaxin 1A (brain)
mm39_v1_chr9_+_113641615_113641685	6.15333	AAUACUG	ENSMUST00000111838.10|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000166734.10|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000214522.2|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000163895.3|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2
mm39_v1_chr8_+_124138163_124138329	6.06763	AAUACUG	ENSMUST00000071134.4|Tubb3|ENSMUSG00000062380.5|tubulin, beta 3 class III	ENSMUST00000212743.2|Tubb3|ENSMUSG00000062380.5|tubulin, beta 3 class III
mm39_v1_chr16_+_16714333_16714462	6.05197	AAUACUG	ENSMUST00000027373.12|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)	ENSMUST00000232247.2|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)
mm39_v1_chr1_+_34840785_34840875	5.96169	AAUACUG	ENSMUST00000047664.16|Arhgef4|ENSMUSG00000037509.22|Rho guanine nucleotide exchange factor (GEF) 4	ENSMUST00000211073.2|SMIM39|ENSMUSG00000118272.2|novel protein
mm39_v1_chr10_-_108846816_108846844	5.76023	AAUACUG	ENSMUST00000105276.8|Syt1|ENSMUSG00000035864.15|synaptotagmin I	ENSMUST00000064054.14|Syt1|ENSMUSG00000035864.15|synaptotagmin I
mm39_v1_chr2_+_31135813_31135913	5.74849	AAUACUG	ENSMUST00000000199.8|Ncs1|ENSMUSG00000062661.7|neuronal calcium sensor 1
mm39_v1_chr2_-_131987008_131987037	5.5944	AAUACUG	ENSMUST00000028815.15|Slc23a2|ENSMUSG00000027340.16|solute carrier family 23 (nucleobase transporters), member 2
mm39_v1_chr5_+_146321757_146321804	5.49545	AAUACUG	ENSMUST00000016143.9|Wasf3|ENSMUSG00000029636.12|WASP family, member 3
mm39_v1_chr7_-_100581314_100581413	5.47246	AAUACUG	ENSMUST00000107032.3|Arhgef17|ENSMUSG00000032875.9|Rho guanine nucleotide exchange factor (GEF) 17
mm39_v1_chr19_-_44396092_44396173	5.4378	AAUACUG	ENSMUST00000041331.4|Scd1|ENSMUSG00000037071.4|stearoyl-Coenzyme A desaturase 1
mm39_v1_chr9_+_40180726_40180737	5.29442	AAUACUG	ENSMUST00000171835.9|Scn3b|ENSMUSG00000049281.17|sodium channel, voltage-gated, type III, beta
mm39_v1_chr7_-_109559671_109559702	5.23516	AAUACUG	ENSMUST00000080437.13|Dennd5a|ENSMUSG00000035901.15|DENN/MADD domain containing 5A
mm39_v1_chr3_+_34704554_34704554	5.23119	AAUACUG	ENSMUST00000099151.6|Sox2|ENSMUSG00000074637.8|SRY (sex determining region Y)-box 2
mm39_v1_chr3_+_68375495_68375542	5.17444	AAUACUG	ENSMUST00000182532.8|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr10_-_57408585_57408626	5.14315	AAUACUG	ENSMUST00000020027.11|Serinc1|ENSMUSG00000019877.11|serine incorporator 1
mm39_v1_chr2_+_65451100_65451170	5.08359	AAUACUG	ENSMUST00000144254.6|Scn2a|ENSMUSG00000075318.14|sodium channel, voltage-gated, type II, alpha	ENSMUST00000028377.14|Scn2a|ENSMUSG00000075318.14|sodium channel, voltage-gated, type II, alpha
mm39_v1_chr4_+_120711974_120712041	5.07021	AAUACUG	ENSMUST00000071093.9|Rims3|ENSMUSG00000032890.18|regulating synaptic membrane exocytosis 3
mm39_v1_chr5_-_142594549_142594563	4.90561	AAUACUG	ENSMUST00000037048.9|Mmd2|ENSMUSG00000039533.9|monocyte to macrophage differentiation-associated 2
mm39_v1_chr18_+_5591864_5591902	4.79756	AAUACUG	ENSMUST00000025081.13|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1	ENSMUST00000159390.8|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1
mm39_v1_chr5_+_48140480_48140504	4.70804	AAUACUG	ENSMUST00000173107.8|Slit2|ENSMUSG00000031558.16|slit guidance ligand 2	ENSMUST00000174313.8|Slit2|ENSMUSG00000031558.16|slit guidance ligand 2	ENSMUST00000174421.8|Slit2|ENSMUSG00000031558.16|slit guidance ligand 2	ENSMUST00000170109.9|Slit2|ENSMUSG00000031558.16|slit guidance ligand 2
mm39_v1_chr10_+_92996686_92996756	4.69015	AAUACUG	ENSMUST00000069965.9|Cdk17|ENSMUSG00000020015.11|cyclin-dependent kinase 17
mm39_v1_chr15_+_30172716_30172748	4.68498	AAUACUG	ENSMUST00000081728.7|Ctnnd2|ENSMUSG00000022240.11|catenin (cadherin associated protein), delta 2
mm39_v1_chr8_+_111448092_111448118	4.66839	AAUACUG	ENSMUST00000052457.15|Mtss2|ENSMUSG00000033763.15|MTSS I-BAR domain containing 2
mm39_v1_chr8_+_114932312_114932411	4.65257	AAUACUG	ENSMUST00000049509.7|Vat1l|ENSMUSG00000046844.7|vesicle amine transport protein 1 like	ENSMUST00000150963.2|Vat1l|ENSMUSG00000046844.7|vesicle amine transport protein 1 like
mm39_v1_chr3_+_107008867_107008883	4.61489	AAUACUG	ENSMUST00000038695.6|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr11_-_119438569_119438585	4.49731	AAUACUG	ENSMUST00000026670.5|Nptx1|ENSMUSG00000025582.5|neuronal pentraxin 1
mm39_v1_chr12_+_55883101_55883146	4.47107	AAUACUG	ENSMUST00000059250.8|Brms1l|ENSMUSG00000012076.9|breast cancer metastasis-suppressor 1-like
mm39_v1_chr1_+_55445033_55445126	4.46771	AAUACUG	ENSMUST00000042986.10|Plcl1|ENSMUSG00000038349.11|phospholipase C-like 1
mm39_v1_chr13_-_58261406_58261469	4.43967	AAUACUG	ENSMUST00000160860.9|Klhl3|ENSMUSG00000014164.16|kelch-like 3
mm39_v1_chr4_-_41569500_41569551	4.43562	AAUACUG	ENSMUST00000108049.9|Fam219a|ENSMUSG00000028439.15|family with sequence similarity 219, member A	ENSMUST00000108052.10|Fam219a|ENSMUSG00000028439.15|family with sequence similarity 219, member A	ENSMUST00000108050.2|Fam219a|ENSMUSG00000028439.15|family with sequence similarity 219, member A
mm39_v1_chr1_+_158189831_158189874	4.24693	AAUACUG	ENSMUST00000193042.6|Astn1|ENSMUSG00000026587.16|astrotactin 1	ENSMUST00000046110.16|Astn1|ENSMUSG00000026587.16|astrotactin 1
mm39_v1_chrX_-_74918709_74918788	4.19157	AAUACUG	ENSMUST00000114059.10|Pls3|ENSMUSG00000016382.16|plastin 3 (T-isoform)
mm39_v1_chr8_-_37081091_37081102	4.14643	AAUACUG	ENSMUST00000033923.14|Dlc1|ENSMUSG00000031523.17|deleted in liver cancer 1
mm39_v1_chr6_+_4903299_4903347	4.08289	AAUACUG	ENSMUST00000035813.9|Ppp1r9a|ENSMUSG00000032827.16|protein phosphatase 1, regulatory subunit 9A
mm39_v1_chr11_+_93886906_93886929	4.03772	AAUACUG	ENSMUST00000041956.14|Spag9|ENSMUSG00000020859.17|sperm associated antigen 9
mm39_v1_chr18_-_78166595_78166641	3.99769	AAUACUG	ENSMUST00000091813.12|Slc14a1|ENSMUSG00000059336.15|solute carrier family 14 (urea transporter), member 1
mm39_v1_chr19_+_44282113_44282113	3.99764	AAUACUG	ENSMUST00000026221.7|Scd2|ENSMUSG00000025203.7|stearoyl-Coenzyme A desaturase 2
mm39_v1_chr7_+_61996317_61996317	3.96825	AAUACUG	ENSMUST00000038775.6|Ndn|ENSMUSG00000033585.6|necdin, MAGE family member
mm39_v1_chr1_-_154975376_154975382	3.96482	AAUACUG	ENSMUST00000055322.6|Ier5|ENSMUSG00000056708.6|immediate early response 5
mm39_v1_chr15_-_77191079_77191128	3.93102	AAUACUG	ENSMUST00000171751.10|Rbfox2|ENSMUSG00000033565.19|RNA binding protein, fox-1 homolog (C. elegans) 2
mm39_v1_chr11_-_90281721_90281753	3.90738	AAUACUG	ENSMUST00000004051.8|Hlf|ENSMUSG00000003949.17|hepatic leukemia factor
mm39_v1_chr12_+_40495951_40496015	3.88973	AAUACUG	ENSMUST00000037488.8|Dock4|ENSMUSG00000035954.11|dedicator of cytokinesis 4
mm39_v1_chr12_+_49429574_49429666	3.85653	AAUACUG	ENSMUST00000179669.3|Foxg1|ENSMUSG00000020950.11|forkhead box G1
mm39_v1_chr18_-_12369351_12369463	3.77187	AAUACUG	ENSMUST00000025279.6|Npc1|ENSMUSG00000024413.15|NPC intracellular cholesterol transporter 1
mm39_v1_chrX_+_162691978_162692013	3.75806	AAUACUG	ENSMUST00000069041.15|Ap1s2|ENSMUSG00000031367.16|adaptor-related protein complex 1, sigma 2 subunit
mm39_v1_chr4_+_119671688_119671723	3.75112	AAUACUG	ENSMUST00000106307.9|Hivep3|ENSMUSG00000028634.18|human immunodeficiency virus type I enhancer binding protein 3
mm39_v1_chr14_-_109151590_109151615	3.71807	AAUACUG	ENSMUST00000100322.4|Slitrk1|ENSMUSG00000075478.4|SLIT and NTRK-like family, member 1
mm39_v1_chr4_-_46991842_46991916	3.66576	AAUACUG	ENSMUST00000107749.4|Gabbr2|ENSMUSG00000039809.11|gamma-aminobutyric acid (GABA) B receptor, 2
mm39_v1_chr2_+_65676111_65676142	3.64015	AAUACUG	ENSMUST00000122912.8|Csrnp3|ENSMUSG00000044647.17|cysteine-serine-rich nuclear protein 3
mm39_v1_chr14_-_61794330_61794339	3.62264	AAUACUG	ENSMUST00000022497.15|Spryd7|ENSMUSG00000021930.15|SPRY domain containing 7
mm39_v1_chr5_-_135963408_135963467	3.6212	AAUACUG	ENSMUST00000198270.2|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	ENSMUST00000055808.6|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm39_v1_chr2_+_178056302_178056382	3.59156	AAUACUG	ENSMUST00000094251.11|Fam217b|ENSMUSG00000070476.11|family with sequence similarity 217, member B
mm39_v1_chr17_+_26028059_26028146	3.55797	AAUACUG	ENSMUST00000045692.9|Fbxl16|ENSMUSG00000025738.9|F-box and leucine-rich repeat protein 16
mm39_v1_chr11_-_118800314_118800398	3.54972	AAUACUG	ENSMUST00000117731.8|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3	ENSMUST00000106278.9|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3	ENSMUST00000120061.8|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3	ENSMUST00000017576.11|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3
mm39_v1_chr1_-_46893206_46893240	3.53377	AAUACUG	ENSMUST00000027131.6|Slc39a10|ENSMUSG00000025986.7|solute carrier family 39 (zinc transporter), member 10
mm39_v1_chr2_+_91287846_91287894	3.48237	AAUACUG	ENSMUST00000028689.4|Lrp4|ENSMUSG00000027253.16|low density lipoprotein receptor-related protein 4
mm39_v1_chr9_+_51676625_51676665	3.46758	AAUACUG	ENSMUST00000065496.12|Arhgap20|ENSMUSG00000053199.14|Rho GTPase activating protein 20
mm39_v1_chr1_-_64995982_64995994	3.44003	AAUACUG	ENSMUST00000097713.2|Plekhm3|ENSMUSG00000051344.14|pleckstrin homology domain containing, family M, member 3
mm39_v1_chr14_-_25769457_25769513	3.4322	AAUACUG	ENSMUST00000069180.8|Zcchc24|ENSMUSG00000055538.8|zinc finger, CCHC domain containing 24
mm39_v1_chrX_-_164110372_164110416	3.42334	AAUACUG	ENSMUST00000058787.9|Glra2|ENSMUSG00000018589.9|glycine receptor, alpha 2 subunit
mm39_v1_chr2_+_143388062_143388151	3.38205	AAUACUG	ENSMUST00000028905.10|Pcsk2|ENSMUSG00000027419.10|proprotein convertase subtilisin/kexin type 2
mm39_v1_chr5_+_140593075_140593107	3.32575	AAUACUG	ENSMUST00000031555.3|Lfng|ENSMUSG00000029570.6|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm39_v1_chr1_-_98023321_98023373	3.30754	AAUACUG	ENSMUST00000058762.15|Pam|ENSMUSG00000026335.17|peptidylglycine alpha-amidating monooxygenase	ENSMUST00000097625.10|Pam|ENSMUSG00000026335.17|peptidylglycine alpha-amidating monooxygenase
mm39_v1_chr13_+_117738972_117739018	3.26048	AAUACUG	ENSMUST00000006991.9|Hcn1|ENSMUSG00000021730.9|hyperpolarization activated cyclic nucleotide gated potassium channel 1
mm39_v1_chr18_+_77032080_77032145	3.23457	AAUACUG	ENSMUST00000026485.15|Hdhd2|ENSMUSG00000025421.16|haloacid dehalogenase-like hydrolase domain containing 2	ENSMUST00000150990.9|Hdhd2|ENSMUSG00000025421.16|haloacid dehalogenase-like hydrolase domain containing 2	ENSMUST00000148955.3|Hdhd2|ENSMUSG00000025421.16|haloacid dehalogenase-like hydrolase domain containing 2
mm39_v1_chr11_+_109540201_109540264	3.22756	AAUACUG	ENSMUST00000106677.8|Prkar1a|ENSMUSG00000020612.17|protein kinase, cAMP dependent regulatory, type I, alpha
mm39_v1_chr13_-_69147639_69147684	3.20893	AAUACUG	ENSMUST00000022013.8|Adcy2|ENSMUSG00000021536.8|adenylate cyclase 2
mm39_v1_chr4_+_150938376_150938525	3.18773	AAUACUG	ENSMUST00000073600.9|Errfi1|ENSMUSG00000028967.11|ERBB receptor feedback inhibitor 1
mm39_v1_chr4_+_42949814_42949924	3.15622	AAUACUG	ENSMUST00000037872.10|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5	ENSMUST00000098112.9|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5
mm39_v1_chr18_+_23548455_23548511	3.08568	AAUACUG	ENSMUST00000115832.4|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha
mm39_v1_chr3_+_156267429_156267507	3.06554	AAUACUG	ENSMUST00000074015.11|Negr1|ENSMUSG00000040037.14|neuronal growth regulator 1
mm39_v1_chr11_-_97635484_97635571	3.01089	AAUACUG	ENSMUST00000018691.9|Pip4k2b|ENSMUSG00000018547.9|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm39_v1_chrX_-_102865546_102865598	2.92247	AAUACUG	ENSMUST00000042664.10|Slc16a2|ENSMUSG00000033965.11|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm39_v1_chr17_-_78725510_78725581	2.90678	AAUACUG	ENSMUST00000234029.2|Fez2|ENSMUSG00000056121.17|fasciculation and elongation protein zeta 2 (zygin II)	ENSMUST00000234530.2|Fez2|ENSMUSG00000056121.17|fasciculation and elongation protein zeta 2 (zygin II)	ENSMUST00000234052.2|Fez2|ENSMUSG00000056121.17|fasciculation and elongation protein zeta 2 (zygin II)	ENSMUST00000070039.14|Fez2|ENSMUSG00000056121.17|fasciculation and elongation protein zeta 2 (zygin II)	ENSMUST00000112487.3|Fez2|ENSMUSG00000056121.17|fasciculation and elongation protein zeta 2 (zygin II)
mm39_v1_chr4_-_41695442_41695442	2.87785	AAUACUG	ENSMUST00000102961.10|Cntfr|ENSMUSG00000028444.18|ciliary neurotrophic factor receptor
mm39_v1_chr2_+_177760768_177760955	2.87269	AAUACUG	ENSMUST00000108917.8|Phactr3|ENSMUSG00000027525.19|phosphatase and actin regulator 3
mm39_v1_chr6_+_8948608_8948619	2.87025	AAUACUG	ENSMUST00000160300.2|Nxph1|ENSMUSG00000046178.4|neurexophilin 1
mm39_v1_chr4_+_49059255_49059331	2.86878	AAUACUG	ENSMUST00000076670.3|Plppr1|ENSMUSG00000063446.5|phospholipid phosphatase related 1
mm39_v1_chr19_+_7394951_7395015	2.86089	AAUACUG	ENSMUST00000159348.3|2700081O15Rik|ENSMUSG00000053080.11|RIKEN cDNA 2700081O15 gene
mm39_v1_chr6_+_105654729_105654756	2.86088	AAUACUG	ENSMUST00000089208.9|Cntn4|ENSMUSG00000064293.15|contactin 4
mm39_v1_chr10_-_127457001_127457031	2.83479	AAUACUG	ENSMUST00000049149.15|Lrp1|ENSMUSG00000040249.16|low density lipoprotein receptor-related protein 1
mm39_v1_chr6_+_99669640_99669640	2.75571	AAUACUG	ENSMUST00000101122.3|Gpr27|ENSMUSG00000072875.3|G protein-coupled receptor 27
mm39_v1_chr9_-_52590686_52590737	2.74612	AAUACUG	ENSMUST00000098768.3|AI593442|ENSMUSG00000078307.4|expressed sequence AI593442	ENSMUST00000213843.2|AI593442|ENSMUSG00000078307.4|expressed sequence AI593442
mm39_v1_chr2_+_21372338_21372353	2.73309	AAUACUG	ENSMUST00000055946.8|Gpr158|ENSMUSG00000045967.12|G protein-coupled receptor 158
mm39_v1_chr1_+_7159134_7159217	2.70812	AAUACUG	ENSMUST00000061280.17|Pcmtd1|ENSMUSG00000051285.18|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	ENSMUST00000182114.8|Pcmtd1|ENSMUSG00000051285.18|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm39_v1_chr4_+_57637817_57637845	2.60805	AAUACUG	ENSMUST00000150412.4|Pakap|ENSMUSG00000089945.14|paralemmin A kinase anchor protein
mm39_v1_chr2_-_151474391_151474519	2.54761	AAUACUG	ENSMUST00000137936.2|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000146172.8|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000094456.10|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000148755.8|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000109875.8|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000028951.14|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000109877.10|Snph|ENSMUSG00000027457.16|syntaphilin
mm39_v1_chr9_-_70564403_70564470	2.51529	AAUACUG	ENSMUST00000213380.2|Mindy2|ENSMUSG00000042444.11|MINDY lysine 48 deubiquitinase 2	ENSMUST00000049031.6|Mindy2|ENSMUSG00000042444.11|MINDY lysine 48 deubiquitinase 2
mm39_v1_chr6_-_90787100_90787142	2.49707	AAUACUG	ENSMUST00000101151.10|Iqsec1|ENSMUSG00000034312.16|IQ motif and Sec7 domain 1
mm39_v1_chrX_-_42256694_42256715	2.44965	AAUACUG	ENSMUST00000115058.8|Tenm1|ENSMUSG00000016150.16|teneurin transmembrane protein 1	ENSMUST00000115059.8|Tenm1|ENSMUSG00000016150.16|teneurin transmembrane protein 1
mm39_v1_chr6_+_108190050_108190065	2.444	AAUACUG	ENSMUST00000032192.9|Itpr1|ENSMUSG00000030102.12|inositol 1,4,5-trisphosphate receptor 1
mm39_v1_chr18_+_65713301_65713471	2.43769	AAUACUG	ENSMUST00000049016.12|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532	ENSMUST00000235493.2|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532	ENSMUST00000183236.2|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532
mm39_v1_chr9_+_95836797_95836836	2.42174	AAUACUG	ENSMUST00000034981.14|Xrn1|ENSMUSG00000032410.14|5'-3' exoribonuclease 1	ENSMUST00000185633.7|Xrn1|ENSMUSG00000032410.14|5'-3' exoribonuclease 1
mm39_v1_chr14_-_123864471_123864564	2.40182	AAUACUG	ENSMUST00000000201.7|Nalcn|ENSMUSG00000000197.9|sodium leak channel, non-selective
mm39_v1_chr15_-_25413838_25413863	2.35936	AAUACUG	ENSMUST00000058845.9|Basp1|ENSMUSG00000045763.9|brain abundant, membrane attached signal protein 1
mm39_v1_chr5_-_76139107_76139124	2.3518	AAUACUG	ENSMUST00000113516.2|Kdr|ENSMUSG00000062960.11|kinase insert domain protein receptor
mm39_v1_chr6_-_92191878_92191906	2.33902	AAUACUG	ENSMUST00000014694.11|Rbsn|ENSMUSG00000014550.15|rabenosyn, RAB effector
mm39_v1_chr3_-_57755500_57755519	2.32956	AAUACUG	ENSMUST00000066882.10|Pfn2|ENSMUSG00000027805.17|profilin 2
mm39_v1_chr11_-_61745843_61745899	2.32704	AAUACUG	ENSMUST00000004920.4|Ulk2|ENSMUSG00000004798.15|unc-51 like kinase 2
mm39_v1_chr10_-_63926044_63926076	2.30099	AAUACUG	ENSMUST00000105439.2|Lrrtm3|ENSMUSG00000042846.9|leucine rich repeat transmembrane neuronal 3
mm39_v1_chr18_+_35695199_35695313	2.29368	AAUACUG	ENSMUST00000236860.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000166793.10|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237780.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000236507.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000235960.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237061.2|Matr3|ENSMUSG00000037236.17|matrin 3
mm39_v1_chr19_+_27194757_27194825	2.27974	AAUACUG	ENSMUST00000047645.13|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor	ENSMUST00000167487.8|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor
mm39_v1_chr10_-_71121083_71121094	2.27766	AAUACUG	ENSMUST00000020085.7|Ube2d1|ENSMUSG00000019927.7|ubiquitin-conjugating enzyme E2D 1
mm39_v1_chr5_+_16139760_16139827	2.26213	AAUACUG	ENSMUST00000101581.10|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000039370.14|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000199704.5|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000180204.8|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000078272.13|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000115281.7|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm39_v1_chr15_+_39061612_39061758	2.25053	AAUACUG	ENSMUST00000082054.12|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2	ENSMUST00000227243.2|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2	ENSMUST00000042917.10|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2
mm39_v1_chr10_+_39245746_39245808	2.24944	AAUACUG	ENSMUST00000063091.13|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000099967.10|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000126486.8|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene
mm39_v1_chr1_+_165123358_165123358	2.244	AAUACUG	ENSMUST00000178700.8|Gpr161|ENSMUSG00000040836.16|G protein-coupled receptor 161
mm39_v1_chr11_+_94881861_94881916	2.23978	AAUACUG	ENSMUST00000038696.12|Ppp1r9b|ENSMUSG00000038976.13|protein phosphatase 1, regulatory subunit 9B
mm39_v1_chr2_-_134486039_134486065	2.20906	AAUACUG	ENSMUST00000038228.11|Tmx4|ENSMUSG00000034723.12|thioredoxin-related transmembrane protein 4
mm39_v1_chr16_-_74208180_74208314	2.20533	AAUACUG	ENSMUST00000117200.8|Robo2|ENSMUSG00000052516.20|roundabout guidance receptor 2
mm39_v1_chr3_-_107425316_107425339	2.17261	AAUACUG	ENSMUST00000169449.8|Slc6a17|ENSMUSG00000027894.15|solute carrier family 6 (neurotransmitter transporter), member 17	ENSMUST00000029499.15|Slc6a17|ENSMUSG00000027894.15|solute carrier family 6 (neurotransmitter transporter), member 17
mm39_v1_chr1_+_104696235_104696254	2.15433	AAUACUG	ENSMUST00000062528.9|Cdh20|ENSMUSG00000050840.9|cadherin 20
mm39_v1_chr9_-_96634874_96634924	2.14418	AAUACUG	ENSMUST00000152594.8|Zbtb38|ENSMUSG00000040433.17|zinc finger and BTB domain containing 38
mm39_v1_chr9_-_95288775_95288775	2.14053	AAUACUG	ENSMUST00000036267.8|Chst2|ENSMUSG00000033350.8|carbohydrate sulfotransferase 2
mm39_v1_chr3_+_52948938_52949004	2.0902	AAUACUG	ENSMUST00000059562.14|Lhfp|ENSMUSG00000048332.14|lipoma HMGIC fusion partner	ENSMUST00000147139.2|Lhfp|ENSMUSG00000048332.14|lipoma HMGIC fusion partner
mm39_v1_chr4_+_57845240_57845265	2.08528	AAUACUG	ENSMUST00000102903.8|Pakap|ENSMUSG00000038729.25|paralemmin A kinase anchor protein	ENSMUST00000107598.9|Pakap|ENSMUSG00000038729.25|paralemmin A kinase anchor protein
mm39_v1_chr6_+_22875494_22875511	2.07261	AAUACUG	ENSMUST00000090568.7|Ptprz1|ENSMUSG00000068748.8|protein tyrosine phosphatase, receptor type Z, polypeptide 1
mm39_v1_chr10_+_69369590_69369603	2.06357	AAUACUG	ENSMUST00000182884.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr15_+_99599978_99600010	2.06278	AAUACUG	ENSMUST00000023759.6|Smarcd1|ENSMUSG00000023018.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm39_v1_chr4_+_57434247_57434369	2.06278	AAUACUG	ENSMUST00000102905.8|Pakap|ENSMUSG00000090053.10|paralemmin A kinase anchor protein
mm39_v1_chr15_-_96597610_96597617	2.06271	AAUACUG	ENSMUST00000023099.8|Slc38a2|ENSMUSG00000022462.8|solute carrier family 38, member 2
mm39_v1_chr4_-_91260265_91260306	2.06211	AAUACUG	ENSMUST00000107110.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000008633.15|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000107118.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1
mm39_v1_chr10_+_40759815_40759859	2.03713	AAUACUG	ENSMUST00000105509.2|Wasf1|ENSMUSG00000019831.15|WASP family, member 1
mm39_v1_chr1_+_37338964_37339022	2.02355	AAUACUG	ENSMUST00000027287.11|Inpp4a|ENSMUSG00000026113.18|inositol polyphosphate-4-phosphatase, type I	ENSMUST00000140264.8|Inpp4a|ENSMUSG00000026113.18|inositol polyphosphate-4-phosphatase, type I
mm39_v1_chr10_+_103203552_103203719	2.01335	AAUACUG	ENSMUST00000179636.3|Slc6a15|ENSMUSG00000019894.15|solute carrier family 6 (neurotransmitter transporter), member 15	ENSMUST00000217905.2|Slc6a15|ENSMUSG00000019894.15|solute carrier family 6 (neurotransmitter transporter), member 15	ENSMUST00000074204.12|Slc6a15|ENSMUSG00000019894.15|solute carrier family 6 (neurotransmitter transporter), member 15
mm39_v1_chr16_-_90807983_90808001	2.00562	AAUACUG	ENSMUST00000170853.8|Synj1|ENSMUSG00000022973.19|synaptojanin 1	ENSMUST00000130813.3|Synj1|ENSMUSG00000022973.19|synaptojanin 1	ENSMUST00000118390.10|Synj1|ENSMUSG00000022973.19|synaptojanin 1
mm39_v1_chr5_-_23821523_23821596	2.00154	AAUACUG	ENSMUST00000088392.9|Srpk2|ENSMUSG00000062604.12|serine/arginine-rich protein specific kinase 2
mm39_v1_chr8_-_103512274_103512408	2.00003	AAUACUG	ENSMUST00000075190.5|Cdh11|ENSMUSG00000031673.7|cadherin 11
mm39_v1_chr3_-_146518706_146518768	1.99957	AAUACUG	ENSMUST00000102515.10|Prkacb|ENSMUSG00000005034.16|protein kinase, cAMP dependent, catalytic, beta
mm39_v1_chr13_+_104424359_104424432	1.9838	AAUACUG	ENSMUST00000065766.7|Adamts6|ENSMUSG00000046169.11|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm39_v1_chr7_+_18659787_18659826	1.97532	AAUACUG	ENSMUST00000032571.10|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2	ENSMUST00000220302.2|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2
mm39_v1_chr17_+_24707711_24707849	1.9453	AAUACUG	ENSMUST00000024958.9|Caskin1|ENSMUSG00000033597.10|CASK interacting protein 1	ENSMUST00000234717.2|Caskin1|ENSMUSG00000033597.10|CASK interacting protein 1
mm39_v1_chr2_-_112198366_112198381	1.94125	AAUACUG	ENSMUST00000028551.4|Emc4|ENSMUSG00000027131.4|ER membrane protein complex subunit 4
mm39_v1_chr17_+_7437500_7437532	1.9328	AAUACUG	ENSMUST00000024575.8|Rps6ka2|ENSMUSG00000023809.11|ribosomal protein S6 kinase, polypeptide 2
mm39_v1_chr4_+_43414696_43414733	1.90222	AAUACUG	ENSMUST00000131668.3|Rusc2|ENSMUSG00000035969.16|RUN and SH3 domain containing 2
mm39_v1_chr14_+_70314652_70314671	1.90055	AAUACUG	ENSMUST00000035908.3|Egr3|ENSMUSG00000033730.5|early growth response 3
mm39_v1_chr8_+_111646548_111646628	1.88694	AAUACUG	ENSMUST00000117534.8|St3gal2|ENSMUSG00000031749.13|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	ENSMUST00000034197.5|St3gal2|ENSMUSG00000031749.13|ST3 beta-galactoside alpha-2,3-sialyltransferase 2
mm39_v1_chr2_-_65397809_65397839	1.88423	AAUACUG	ENSMUST00000066432.12|Scn3a|ENSMUSG00000057182.16|sodium channel, voltage-gated, type III, alpha
mm39_v1_chrX_-_151151680_151151737	1.87494	AAUACUG	ENSMUST00000070316.12|Gpr173|ENSMUSG00000056679.14|G-protein coupled receptor 173
mm39_v1_chr19_+_60744385_60744432	1.86241	AAUACUG	ENSMUST00000088237.6|Nanos1|ENSMUSG00000072437.5|nanos C2HC-type zinc finger 1
mm39_v1_chr2_-_73722874_73722900	1.83361	AAUACUG	ENSMUST00000136958.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112010.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000128531.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112017.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr5_-_108022900_108022973	1.83172	AAUACUG	ENSMUST00000138111.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5	ENSMUST00000112642.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5
mm39_v1_chr1_+_194302123_194302141	1.81432	AAUACUG	ENSMUST00000027952.12|Plxna2|ENSMUSG00000026640.13|plexin A2
mm39_v1_chr6_-_32565127_32565148	1.81421	AAUACUG	ENSMUST00000115096.4|Plxna4|ENSMUSG00000029765.13|plexin A4
mm39_v1_chr13_+_104315301_104315374	1.80359	AAUACUG	ENSMUST00000022225.12|Trim23|ENSMUSG00000021712.16|tripartite motif-containing 23	ENSMUST00000069187.12|Trim23|ENSMUSG00000021712.16|tripartite motif-containing 23
mm39_v1_chr19_-_59932079_59932110	1.79856	AAUACUG	ENSMUST00000171986.8|Rab11fip2|ENSMUSG00000040022.15|RAB11 family interacting protein 2 (class I)
mm39_v1_chr12_-_32111214_32111302	1.78869	AAUACUG	ENSMUST00000003079.12|Prkar2b|ENSMUSG00000002997.16|protein kinase, cAMP dependent regulatory, type II beta	ENSMUST00000036497.16|Prkar2b|ENSMUSG00000002997.16|protein kinase, cAMP dependent regulatory, type II beta
mm39_v1_chr15_-_96953823_96953845	1.78844	AAUACUG	ENSMUST00000023101.10|Slc38a4|ENSMUSG00000022464.15|solute carrier family 38, member 4
mm39_v1_chrX_+_149829131_149829146	1.78277	AAUACUG	ENSMUST00000112685.8|Fgd1|ENSMUSG00000025265.15|FYVE, RhoGEF and PH domain containing 1
mm39_v1_chr2_-_136229849_136229905	1.75625	AAUACUG	ENSMUST00000035264.9|Pak5|ENSMUSG00000039913.13|p21 (RAC1) activated kinase 5	ENSMUST00000077200.4|Pak5|ENSMUSG00000039913.13|p21 (RAC1) activated kinase 5
mm39_v1_chr5_+_134128543_134128635	1.74738	AAUACUG	ENSMUST00000016088.9|Castor2|ENSMUSG00000015944.10|cytosolic arginine sensor for mTORC1 subunit 2
mm39_v1_chr16_-_9812410_9812446	1.7401	AAUACUG	ENSMUST00000115835.8|Grin2a|ENSMUSG00000059003.13|glutamate receptor, ionotropic, NMDA2A (epsilon 1)
mm39_v1_chr10_-_20600797_20600824	1.72231	AAUACUG	ENSMUST00000020165.14|Pde7b|ENSMUSG00000019990.16|phosphodiesterase 7B
mm39_v1_chr6_-_145811028_145811085	1.70769	AAUACUG	ENSMUST00000111703.2|Bhlhe41|ENSMUSG00000030256.12|basic helix-loop-helix family, member e41
mm39_v1_chr19_+_23118545_23118627	1.69486	AAUACUG	ENSMUST00000036884.3|Klf9|ENSMUSG00000033863.3|Kruppel-like factor 9
mm39_v1_chr13_+_16189041_16189060	1.68674	AAUACUG	ENSMUST00000164993.2|Inhba|ENSMUSG00000041324.15|inhibin beta-A
mm39_v1_chr17_-_26727437_26727493	1.68072	AAUACUG	ENSMUST00000236661.2|Dusp1|ENSMUSG00000024190.8|dual specificity phosphatase 1	ENSMUST00000025025.7|Dusp1|ENSMUSG00000024190.8|dual specificity phosphatase 1
mm39_v1_chr3_-_50398027_50398063	1.67994	AAUACUG	ENSMUST00000029297.6|Slc7a11|ENSMUSG00000027737.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	ENSMUST00000194462.6|Slc7a11|ENSMUSG00000027737.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm39_v1_chr2_+_22512195_22512217	1.63822	AAUACUG	ENSMUST00000028123.4|Gad2|ENSMUSG00000026787.4|glutamic acid decarboxylase 2
mm39_v1_chr14_-_26693189_26693189	1.63007	AAUACUG	ENSMUST00000036570.5|Appl1|ENSMUSG00000040760.12|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm39_v1_chr2_-_102231208_102231314	1.62701	AAUACUG	ENSMUST00000102573.8|Trim44|ENSMUSG00000027189.17|tripartite motif-containing 44
mm39_v1_chr10_-_78427721_78427798	1.59529	AAUACUG	ENSMUST00000040580.7|Syde1|ENSMUSG00000032714.7|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
mm39_v1_chr7_-_121306476_121306685	1.58043	AAUACUG	ENSMUST00000046929.7|Usp31|ENSMUSG00000063317.8|ubiquitin specific peptidase 31
mm39_v1_chr11_-_106107132_106107189	1.57896	AAUACUG	ENSMUST00000002043.10|Ccdc47|ENSMUSG00000078622.9|coiled-coil domain containing 47
mm39_v1_chr14_-_122035225_122035272	1.57671	AAUACUG	ENSMUST00000100299.11|Dock9|ENSMUSG00000025558.20|dedicator of cytokinesis 9
mm39_v1_chr2_+_116951855_116951880	1.57315	AAUACUG	ENSMUST00000028829.13|Spred1|ENSMUSG00000027351.15|sprouty protein with EVH-1 domain 1, related sequence
mm39_v1_chr2_-_66240408_66240478	1.56943	AAUACUG	ENSMUST00000112366.8|Scn1a|ENSMUSG00000064329.14|sodium channel, voltage-gated, type I, alpha
mm39_v1_chr6_-_53797748_53797822	1.56613	AAUACUG	ENSMUST00000127748.5|Tril|ENSMUSG00000043496.8|TLR4 interactor with leucine-rich repeats
mm39_v1_chr2_-_45003270_45003296	1.56185	AAUACUG	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr5_+_139366336_139366463	1.55183	AAUACUG	ENSMUST00000051293.8|Gpr146|ENSMUSG00000044197.9|G protein-coupled receptor 146
mm39_v1_chr18_+_86729184_86729235	1.54746	AAUACUG	ENSMUST00000068423.10|Cbln2|ENSMUSG00000024647.15|cerebellin 2 precursor protein
mm39_v1_chr14_-_14255588_14255638	1.53249	AAUACUG	ENSMUST00000022272.14|Kctd6|ENSMUSG00000021752.15|potassium channel tetramerisation domain containing 6
mm39_v1_chr3_+_28835425_28835493	1.52581	AAUACUG	ENSMUST00000060500.9|Eif5a2|ENSMUSG00000050192.9|eukaryotic translation initiation factor 5A2
mm39_v1_chr18_+_69478790_69478882	1.51775	AAUACUG	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr1_-_16727067_16727121	1.51526	AAUACUG	ENSMUST00000188641.7|Eloc|ENSMUSG00000079658.10|elongin C
mm39_v1_chr14_-_80008745_80008758	1.51422	AAUACUG	ENSMUST00000039568.11|Pcdh8|ENSMUSG00000036422.11|protocadherin 8	ENSMUST00000195355.2|Pcdh8|ENSMUSG00000036422.11|protocadherin 8
mm39_v1_chr17_-_36149142_36149198	1.50913	AAUACUG	ENSMUST00000001566.10|Tubb5|ENSMUSG00000001525.11|tubulin, beta 5 class I
mm39_v1_chr19_+_40819682_40819757	1.50845	AAUACUG	ENSMUST00000025983.13|Ccnj|ENSMUSG00000025010.15|cyclin J	ENSMUST00000119316.2|Ccnj|ENSMUSG00000025010.15|cyclin J
mm39_v1_chr3_+_137573436_137573677	1.50437	AAUACUG	ENSMUST00000090178.10|Dnajb14|ENSMUSG00000074212.8|DnaJ heat shock protein family (Hsp40) member B14
mm39_v1_chr18_+_74198173_74198173	1.49701	AAUACUG	ENSMUST00000066583.2|Gm9925|ENSMUSG00000053861.2|predicted gene 9925
mm39_v1_chr2_+_151923449_151923544	1.49012	AAUACUG	ENSMUST00000064061.4|Scrt2|ENSMUSG00000060257.3|scratch family zinc finger 2
mm39_v1_chrX_-_7242065_7242069	1.48744	AAUACUG	ENSMUST00000191497.2|Usp27x|ENSMUSG00000046269.18|ubiquitin specific peptidase 27, X chromosome	ENSMUST00000115744.2|Usp27x|ENSMUSG00000046269.18|ubiquitin specific peptidase 27, X chromosome
mm39_v1_chr3_-_32670628_32670734	1.48423	AAUACUG	ENSMUST00000193050.2|Gnb4|ENSMUSG00000027669.15|guanine nucleotide binding protein (G protein), beta 4	ENSMUST00000108234.8|Gnb4|ENSMUSG00000027669.15|guanine nucleotide binding protein (G protein), beta 4	ENSMUST00000155737.8|Gnb4|ENSMUSG00000027669.15|guanine nucleotide binding protein (G protein), beta 4
mm39_v1_chr6_+_86826470_86826577	1.47757	AAUACUG	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chr9_+_20563386_20563401	1.47206	AAUACUG	ENSMUST00000034689.8|Pin1|ENSMUSG00000032171.8|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
mm39_v1_chr5_-_86320599_86320662	1.45696	AAUACUG	ENSMUST00000039373.14|Uba6|ENSMUSG00000035898.14|ubiquitin-like modifier activating enzyme 6
mm39_v1_chr12_+_102095260_102095433	1.45433	AAUACUG	ENSMUST00000079020.12|Slc24a4|ENSMUSG00000041771.15|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm39_v1_chr17_+_24768808_24769007	1.44518	AAUACUG	ENSMUST00000228550.2|Pkd1|ENSMUSG00000032855.7|polycystin 1, transient receptor poteintial channel interacting	ENSMUST00000035565.5|Pkd1|ENSMUSG00000032855.7|polycystin 1, transient receptor poteintial channel interacting
mm39_v1_chr12_-_16660960_16660994	1.42428	AAUACUG	ENSMUST00000239165.2|Lpin1|ENSMUSG00000020593.17|lipin 1	ENSMUST00000111067.10|Lpin1|ENSMUSG00000020593.17|lipin 1
mm39_v1_chr6_-_149003171_149003184	1.41431	AAUACUG	ENSMUST00000111557.8|Dennd5b|ENSMUSG00000030313.16|DENN/MADD domain containing 5B
mm39_v1_chr5_-_123887434_123887483	1.40609	AAUACUG	ENSMUST00000182955.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000182489.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000183147.9|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000050827.14|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000057795.12|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000111515.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000182309.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2
mm39_v1_chr5_+_137517140_137517140	1.3964	AAUACUG	ENSMUST00000031727.10|Gigyf1|ENSMUSG00000029714.12|GRB10 interacting GYF protein 1
mm39_v1_chr1_+_15382676_15382676	1.39498	AAUACUG	ENSMUST00000170146.3|Kcnb2|ENSMUSG00000092083.5|potassium voltage gated channel, Shab-related subfamily, member 2
mm39_v1_chr15_-_89199456_89199515	1.39005	AAUACUG	ENSMUST00000144585.9|Sbf1|ENSMUSG00000036529.18|SET binding factor 1	ENSMUST00000123791.8|Sbf1|ENSMUSG00000036529.18|SET binding factor 1
mm39_v1_chr4_+_17853452_17853474	1.38899	AAUACUG	ENSMUST00000029881.10|Mmp16|ENSMUSG00000028226.16|matrix metallopeptidase 16
mm39_v1_chr8_+_88845375_88845405	1.38378	AAUACUG	ENSMUST00000095214.10|Cnep1r1|ENSMUSG00000036810.17|CTD nuclear envelope phosphatase 1 regulatory subunit 1
mm39_v1_chr2_-_167032068_167032093	1.38371	AAUACUG	ENSMUST00000059826.10|Kcnb1|ENSMUSG00000050556.10|potassium voltage gated channel, Shab-related subfamily, member 1
mm39_v1_chr16_+_13176238_13176334	1.34588	AAUACUG	ENSMUST00000149359.2|Mrtfb|ENSMUSG00000009569.15|myocardin related transcription factor B
mm39_v1_chr4_-_81360993_81361073	1.34102	AAUACUG	ENSMUST00000107262.8|Mpdz|ENSMUSG00000028402.19|multiple PDZ domain crumbs cell polarity complex component	ENSMUST00000102830.10|Mpdz|ENSMUSG00000028402.19|multiple PDZ domain crumbs cell polarity complex component
mm39_v1_chrX_+_150127171_150127237	1.31745	AAUACUG	ENSMUST00000073364.6|Fam120c|ENSMUSG00000025262.9|family with sequence similarity 120, member C
mm39_v1_chr17_+_87415049_87415129	1.30845	AAUACUG	ENSMUST00000041369.8|Socs5|ENSMUSG00000037104.10|suppressor of cytokine signaling 5	ENSMUST00000234803.2|Socs5|ENSMUSG00000037104.10|suppressor of cytokine signaling 5
mm39_v1_chr2_+_181162278_181162324	1.28486	AAUACUG	ENSMUST00000072334.12|Dnajc5|ENSMUSG00000000826.17|DnaJ heat shock protein family (Hsp40) member C5
mm39_v1_chr11_+_52655461_52655520	1.26851	AAUACUG	ENSMUST00000036796.8|Fstl4|ENSMUSG00000036264.10|follistatin-like 4
mm39_v1_chr5_+_150597204_150597269	1.26771	AAUACUG	ENSMUST00000202170.4|Pds5b|ENSMUSG00000034021.16|PDS5 cohesin associated factor B	ENSMUST00000016569.11|Pds5b|ENSMUSG00000034021.16|PDS5 cohesin associated factor B
mm39_v1_chr5_-_148865429_148865480	1.25785	AAUACUG	ENSMUST00000149169.3|Katnal1|ENSMUSG00000041298.16|katanin p60 subunit A-like 1	ENSMUST00000047257.15|Katnal1|ENSMUSG00000041298.16|katanin p60 subunit A-like 1
mm39_v1_chr5_-_123711098_123711103	1.24844	AAUACUG	ENSMUST00000031388.13|Vps33a|ENSMUSG00000029434.13|VPS33A CORVET/HOPS core subunit
mm39_v1_chr4_-_56947411_56947448	1.24781	AAUACUG	ENSMUST00000107609.4|Tmem245|ENSMUSG00000055296.15|transmembrane protein 245	ENSMUST00000068792.13|Tmem245|ENSMUSG00000055296.15|transmembrane protein 245
mm39_v1_chr9_-_83323080_83323180	1.23578	AAUACUG	ENSMUST00000034791.15|Lca5|ENSMUSG00000032258.16|Leber congenital amaurosis 5 (human)	ENSMUST00000188548.7|Lca5|ENSMUSG00000032258.16|Leber congenital amaurosis 5 (human)	ENSMUST00000034793.15|Lca5|ENSMUSG00000032258.16|Leber congenital amaurosis 5 (human)
mm39_v1_chr15_-_54141816_54141880	1.23412	AAUACUG	ENSMUST00000079772.4|Tnfrsf11b|ENSMUSG00000063727.4|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
mm39_v1_chr17_-_46342739_46342789	1.23001	AAUACUG	ENSMUST00000024747.14|Vegfa|ENSMUSG00000023951.19|vascular endothelial growth factor A
mm39_v1_chr12_-_46865709_46865720	1.2158	AAUACUG	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr8_+_36924702_36924728	1.21487	AAUACUG	ENSMUST00000135373.8|Trmt9b|ENSMUSG00000039620.18|tRNA methyltransferase 9B	ENSMUST00000147525.9|Trmt9b|ENSMUSG00000039620.18|tRNA methyltransferase 9B
mm39_v1_chr15_-_48655329_48655459	1.21129	AAUACUG	ENSMUST00000160658.8|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3	ENSMUST00000100670.10|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3	ENSMUST00000162830.8|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3
mm39_v1_chr3_+_32490300_32490300	1.20873	AAUACUG	ENSMUST00000029201.14|Pik3ca|ENSMUSG00000027665.14|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
mm39_v1_chr15_-_64184485_64184537	1.20513	AAUACUG	ENSMUST00000177083.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1	ENSMUST00000177371.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1
mm39_v1_chr9_-_56151334_56151382	1.20378	AAUACUG	ENSMUST00000188142.7|Peak1|ENSMUSG00000074305.10|pseudopodium-enriched atypical kinase 1
mm39_v1_chr13_-_94422337_94422409	1.19597	AAUACUG	ENSMUST00000022197.15|Scamp1|ENSMUSG00000021687.15|secretory carrier membrane protein 1	ENSMUST00000152555.8|Scamp1|ENSMUSG00000021687.15|secretory carrier membrane protein 1
mm39_v1_chr4_+_155685830_155685902	1.19065	AAUACUG	ENSMUST00000105608.9|Slc35e2|ENSMUSG00000042202.16|solute carrier family 35, member E2
mm39_v1_chr2_+_119505543_119505589	1.17268	AAUACUG	ENSMUST00000028767.9|Rtf1|ENSMUSG00000027304.10|RTF1, Paf1/RNA polymerase II complex component
mm39_v1_chr19_-_47452840_47452894	1.16717	AAUACUG	ENSMUST00000081619.10|Sh3pxd2a|ENSMUSG00000053617.13|SH3 and PX domains 2A
mm39_v1_chr11_-_86884507_86884538	1.16344	AAUACUG	ENSMUST00000018571.5|Ypel2|ENSMUSG00000018427.9|yippee like 2
mm39_v1_chr1_-_16689660_16689713	1.14878	AAUACUG	ENSMUST00000117146.9|Ube2w|ENSMUSG00000025939.20|ubiquitin-conjugating enzyme E2W (putative)
mm39_v1_chr16_-_22258469_22258484	1.1477	AAUACUG	ENSMUST00000079601.13|Etv5|ENSMUSG00000013089.16|ets variant 5
mm39_v1_chr19_-_46561532_46561646	1.14734	AAUACUG	ENSMUST00000026009.10|Arl3|ENSMUSG00000025035.10|ADP-ribosylation factor-like 3	ENSMUST00000236255.2|Arl3|ENSMUSG00000025035.10|ADP-ribosylation factor-like 3
mm39_v1_chr7_-_34012956_34012993	1.14303	AAUACUG	ENSMUST00000108074.8|Garre1|ENSMUSG00000066571.14|granule associated Rac and RHOG effector 1
mm39_v1_chr14_-_39194782_39195045	1.13534	AAUACUG	ENSMUST00000168810.9|Nrg3|ENSMUSG00000041014.18|neuregulin 3	ENSMUST00000173780.2|Nrg3|ENSMUSG00000041014.18|neuregulin 3	ENSMUST00000166968.9|Nrg3|ENSMUSG00000041014.18|neuregulin 3
mm39_v1_chrX_+_20554193_20554279	1.13372	AAUACUG	ENSMUST00000115364.8|Cdk16|ENSMUSG00000031065.15|cyclin-dependent kinase 16
mm39_v1_chr6_+_108760025_108760096	1.11115	AAUACUG	ENSMUST00000032196.9|Arl8b|ENSMUSG00000030105.9|ADP-ribosylation factor-like 8B
mm39_v1_chr11_-_113956996_113957044	1.1076	AAUACUG	ENSMUST00000041627.14|Sdk2|ENSMUSG00000041592.17|sidekick cell adhesion molecule 2
mm39_v1_chr9_-_16289527_16289527	1.10164	AAUACUG	ENSMUST00000082170.6|Fat3|ENSMUSG00000074505.7|FAT atypical cadherin 3
mm39_v1_chr6_-_88022172_88022252	1.09462	AAUACUG	ENSMUST00000203674.3|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000204126.2|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000113596.8|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000113600.10|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family
mm39_v1_chr7_-_109092834_109092945	1.09001	AAUACUG	ENSMUST00000106739.8|Trim66|ENSMUSG00000031026.16|tripartite motif-containing 66
mm39_v1_chr5_+_142387226_142387284	1.08563	AAUACUG	ENSMUST00000198422.2|Foxk1|ENSMUSG00000056493.10|forkhead box K1	ENSMUST00000072837.7|Foxk1|ENSMUSG00000056493.10|forkhead box K1
mm39_v1_chr10_-_84276454_84276468	1.07586	AAUACUG	ENSMUST00000020220.15|Nuak1|ENSMUSG00000020032.15|NUAK family, SNF1-like kinase, 1
mm39_v1_chrX_-_104973003_104973014	1.06797	AAUACUG	ENSMUST00000130980.2|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler	ENSMUST00000113573.8|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler
mm39_v1_chr5_-_151113619_151113734	1.06023	AAUACUG	ENSMUST00000062015.15|Stard13|ENSMUSG00000016128.15|StAR-related lipid transfer (START) domain containing 13	ENSMUST00000110483.9|Stard13|ENSMUSG00000016128.15|StAR-related lipid transfer (START) domain containing 13
mm39_v1_chr4_+_105014536_105014552	1.05827	AAUACUG	ENSMUST00000064139.8|Plpp3|ENSMUSG00000028517.9|phospholipid phosphatase 3
mm39_v1_chr10_-_94780695_94780724	1.05585	AAUACUG	ENSMUST00000099337.5|Plxnc1|ENSMUSG00000074785.6|plexin C1
mm39_v1_chr19_+_29499671_29499682	1.04223	AAUACUG	ENSMUST00000043610.13|Ric1|ENSMUSG00000038658.16|RAB6A GEF complex partner 1
mm39_v1_chr4_-_110144676_110144731	1.02004	AAUACUG	ENSMUST00000106598.8|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4	ENSMUST00000102723.11|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4	ENSMUST00000153906.2|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4
mm39_v1_chr1_-_54233207_54233207	1.01523	AAUACUG	ENSMUST00000120904.8|Hecw2|ENSMUSG00000042807.16|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm39_v1_chr12_-_13299197_13299224	1.01334	AAUACUG	ENSMUST00000071103.10|Ddx1|ENSMUSG00000037149.11|DEAD box helicase 1
mm39_v1_chrX_+_95139639_95139662	1.00455	AAUACUG	ENSMUST00000117399.2|Msn|ENSMUSG00000031207.17|moesin
mm39_v1_chr1_+_160806194_160806226	0.984853	AAUACUG	ENSMUST00000064725.11|Serpinc1|ENSMUSG00000026715.13|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	ENSMUST00000191936.2|Serpinc1|ENSMUSG00000026715.13|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm39_v1_chr13_+_81859460_81859649	0.979927	AAUACUG	ENSMUST00000057598.7|Mblac2|ENSMUSG00000051098.7|metallo-beta-lactamase domain containing 2	ENSMUST00000224299.2|Mblac2|ENSMUSG00000051098.7|metallo-beta-lactamase domain containing 2
mm39_v1_chr1_-_156301821_156301901	0.97704	AAUACUG	ENSMUST00000188027.2|Soat1|ENSMUSG00000026600.13|sterol O-acyltransferase 1	ENSMUST00000187507.7|Soat1|ENSMUSG00000026600.13|sterol O-acyltransferase 1	ENSMUST00000189661.7|Soat1|ENSMUSG00000026600.13|sterol O-acyltransferase 1
mm39_v1_chr8_-_111985824_111985858	0.976324	AAUACUG	ENSMUST00000169020.8|Glg1|ENSMUSG00000003316.15|golgi apparatus protein 1	ENSMUST00000003404.9|Glg1|ENSMUSG00000003316.15|golgi apparatus protein 1
mm39_v1_chr2_+_90575714_90575813	0.974729	AAUACUG	ENSMUST00000238890.2|Fnbp4|ENSMUSG00000008200.16|formin binding protein 4	ENSMUST00000013759.6|Fnbp4|ENSMUSG00000008200.16|formin binding protein 4
mm39_v1_chr18_-_24663260_24663300	0.970829	AAUACUG	ENSMUST00000046206.5|Rprd1a|ENSMUSG00000040446.5|regulation of nuclear pre-mRNA domain containing 1A
mm39_v1_chr2_+_160573604_160573691	0.966888	AAUACUG	ENSMUST00000174885.2|Plcg1|ENSMUSG00000016933.18|phospholipase C, gamma 1	ENSMUST00000109462.8|Plcg1|ENSMUSG00000016933.18|phospholipase C, gamma 1
mm39_v1_chr7_+_24602337_24602510	0.961544	AAUACUG	ENSMUST00000117796.8|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1	ENSMUST00000047873.16|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1	ENSMUST00000098683.11|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1	ENSMUST00000206508.2|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1	ENSMUST00000206028.2|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1
mm39_v1_chr7_+_120276801_120276868	0.947742	AAUACUG	ENSMUST00000208454.2|Mosmo|ENSMUSG00000046096.8|modulator of smoothened	ENSMUST00000060175.8|Mosmo|ENSMUSG00000046096.8|modulator of smoothened
mm39_v1_chr10_-_25076008_25076076	0.93573	AAUACUG	ENSMUST00000100012.3|Akap7|ENSMUSG00000039166.17|A kinase (PRKA) anchor protein 7
mm39_v1_chr2_+_124452493_124452534	0.934849	AAUACUG	ENSMUST00000103239.10|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	ENSMUST00000103240.9|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm39_v1_chr10_-_110845860_110845927	0.92274	AAUACUG	ENSMUST00000041723.15|Zdhhc17|ENSMUSG00000035798.15|zinc finger, DHHC domain containing 17
mm39_v1_chr11_+_59553296_59553369	0.92132	AAUACUG	ENSMUST00000072031.13|Mprip|ENSMUSG00000005417.18|myosin phosphatase Rho interacting protein	ENSMUST00000066330.15|Mprip|ENSMUSG00000005417.18|myosin phosphatase Rho interacting protein	ENSMUST00000108751.8|Mprip|ENSMUSG00000005417.18|myosin phosphatase Rho interacting protein	ENSMUST00000116371.8|Mprip|ENSMUSG00000005417.18|myosin phosphatase Rho interacting protein
mm39_v1_chr9_-_31123083_31123120	0.908327	AAUACUG	ENSMUST00000217641.2|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000072634.15|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000079758.9|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000213254.2|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2
mm39_v1_chr13_+_41403317_41403340	0.905103	AAUACUG	ENSMUST00000165561.4|Smim13|ENSMUSG00000091264.4|small integral membrane protein 13
mm39_v1_chr9_+_59658156_59658205	0.897493	AAUACUG	ENSMUST00000136740.8|Myo9a|ENSMUSG00000039585.16|myosin IXa	ENSMUST00000135298.8|Myo9a|ENSMUSG00000039585.16|myosin IXa	ENSMUST00000128341.2|Myo9a|ENSMUSG00000039585.16|myosin IXa
mm39_v1_chr5_-_149559667_149559678	0.876997	AAUACUG	ENSMUST00000074846.14|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1
mm39_v1_chr6_+_92068361_92068371	0.870904	AAUACUG	ENSMUST00000113460.8|Nr2c2|ENSMUSG00000005893.15|nuclear receptor subfamily 2, group C, member 2
mm39_v1_chr4_+_12089373_12089441	0.86503	AAUACUG	ENSMUST00000095143.9|Rbm12b2|ENSMUSG00000052137.12|RNA binding motif protein 12 B2	ENSMUST00000063839.6|Rbm12b2|ENSMUSG00000052137.12|RNA binding motif protein 12 B2
mm39_v1_chr16_-_31821938_31822105	0.856422	AAUACUG	ENSMUST00000023457.13|Senp5|ENSMUSG00000022772.13|SUMO/sentrin specific peptidase 5	ENSMUST00000231360.2|Senp5|ENSMUSG00000022772.13|SUMO/sentrin specific peptidase 5
mm39_v1_chr2_+_163836880_163836880	0.841992	AAUACUG	ENSMUST00000018470.10|Ywhab|ENSMUSG00000018326.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm39_v1_chr2_-_6889783_6889807	0.831519	AAUACUG	ENSMUST00000170438.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114924.10|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114934.11|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chrX_-_103457431_103457463	0.829738	AAUACUG	ENSMUST00000033695.6|Abcb7|ENSMUSG00000031333.8|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm39_v1_chr12_-_78908409_78908420	0.81786	AAUACUG	ENSMUST00000021536.9|Atp6v1d|ENSMUSG00000021114.10|ATPase, H+ transporting, lysosomal V1 subunit D
mm39_v1_chr12_-_5425682_5425705	0.814371	AAUACUG	ENSMUST00000020958.9|Klhl29|ENSMUSG00000020627.11|kelch-like 29
mm39_v1_chr12_-_112893382_112893398	0.810146	AAUACUG	ENSMUST00000075827.5|Jag2|ENSMUSG00000002799.7|jagged 2
mm39_v1_chr11_+_80099843_80099884	0.806538	AAUACUG	ENSMUST00000077451.14|Rhot1|ENSMUSG00000017686.18|ras homolog family member T1	ENSMUST00000055056.16|Rhot1|ENSMUSG00000017686.18|ras homolog family member T1
mm39_v1_chr1_-_174749379_174749393	0.805238	AAUACUG	ENSMUST00000055294.4|Grem2|ENSMUSG00000050069.4|gremlin 2, DAN family BMP antagonist
mm39_v1_chr16_+_8331293_8331361	0.804325	AAUACUG	ENSMUST00000065987.14|Abat|ENSMUSG00000057880.13|4-aminobutyrate aminotransferase	ENSMUST00000115838.8|Abat|ENSMUSG00000057880.13|4-aminobutyrate aminotransferase	ENSMUST00000115839.9|Abat|ENSMUSG00000057880.13|4-aminobutyrate aminotransferase
mm39_v1_chr19_+_55304703_55304799	0.79899	AAUACUG	ENSMUST00000225529.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000223690.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000095950.3|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A
mm39_v1_chr3_-_84212069_84212116	0.78633	AAUACUG	ENSMUST00000107692.8|Trim2|ENSMUSG00000027993.17|tripartite motif-containing 2
mm39_v1_chr16_-_76170714_76170741	0.783733	AAUACUG	ENSMUST00000231585.2|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1	ENSMUST00000121927.8|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1
mm39_v1_chr10_-_30531768_30531807	0.774692	AAUACUG	ENSMUST00000092610.12|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7
mm39_v1_chr12_-_107969853_107969872	0.769943	AAUACUG	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chr4_-_132611820_132611835	0.768534	AAUACUG	ENSMUST00000030698.5|Stx12|ENSMUSG00000028879.5|syntaxin 12
mm39_v1_chrX_+_81992467_81992521	0.760256	AAUACUG	ENSMUST00000114000.8|Dmd|ENSMUSG00000045103.20|dystrophin, muscular dystrophy
mm39_v1_chr14_+_30973407_30973489	0.751049	AAUACUG	ENSMUST00000022458.11|Bap1|ENSMUSG00000021901.11|Brca1 associated protein 1
mm39_v1_chr2_+_30127692_30127759	0.739165	AAUACUG	ENSMUST00000113654.8|Lrrc8a|ENSMUSG00000007476.19|leucine rich repeat containing 8A VRAC subunit A	ENSMUST00000095078.3|Lrrc8a|ENSMUSG00000007476.19|leucine rich repeat containing 8A VRAC subunit A
mm39_v1_chrX_+_41156713_41156751	0.734053	AAUACUG	ENSMUST00000115094.8|Xiap|ENSMUSG00000025860.16|X-linked inhibitor of apoptosis
mm39_v1_chr9_-_22300409_22300490	0.73348	AAUACUG	ENSMUST00000040912.9|Anln|ENSMUSG00000036777.9|anillin, actin binding protein
mm39_v1_chrX_-_163763273_163763333	0.732232	AAUACUG	ENSMUST00000112247.9|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2	ENSMUST00000004715.2|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2
mm39_v1_chr8_+_95393228_95393304	0.730368	AAUACUG	ENSMUST00000034228.16|Arl2bp|ENSMUSG00000031776.18|ADP-ribosylation factor-like 2 binding protein
mm39_v1_chr1_+_136552639_136552688	0.723712	AAUACUG	ENSMUST00000047734.15|Zfp281|ENSMUSG00000041483.15|zinc finger protein 281	ENSMUST00000112046.2|Zfp281|ENSMUSG00000041483.15|zinc finger protein 281
mm39_v1_chr9_-_101128976_101129003	0.719126	AAUACUG	ENSMUST00000075941.12|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr11_+_87938519_87938554	0.715231	AAUACUG	ENSMUST00000079866.11|Srsf1|ENSMUSG00000018379.18|serine and arginine-rich splicing factor 1
mm39_v1_chr14_+_76741918_76741970	0.711212	AAUACUG	ENSMUST00000022587.10|Tsc22d1|ENSMUSG00000022010.20|TSC22 domain family, member 1	ENSMUST00000134109.2|Tsc22d1|ENSMUSG00000022010.20|TSC22 domain family, member 1
mm39_v1_chr10_-_8761777_8761821	0.707946	AAUACUG	ENSMUST00000015449.6|Sash1|ENSMUSG00000015305.7|SAM and SH3 domain containing 1
mm39_v1_chr2_-_125624754_125624790	0.704728	AAUACUG	ENSMUST00000053699.13|Secisbp2l|ENSMUSG00000035093.17|SECIS binding protein 2-like
mm39_v1_chr1_-_52272370_52272391	0.704023	AAUACUG	ENSMUST00000114513.9|Gls|ENSMUSG00000026103.15|glutaminase	ENSMUST00000114510.8|Gls|ENSMUSG00000026103.15|glutaminase
mm39_v1_chr6_-_92160952_92161019	0.703318	AAUACUG	ENSMUST00000140438.2|Mrps25|ENSMUSG00000014551.9|mitochondrial ribosomal protein S25
mm39_v1_chr11_-_102446947_102447025	0.692309	AAUACUG	ENSMUST00000143842.2|Gpatch8|ENSMUSG00000034621.15|G patch domain containing 8
mm39_v1_chr17_+_69144053_69144131	0.689786	AAUACUG	ENSMUST00000178545.3|Tmem200c|ENSMUSG00000095407.3|transmembrane protein 200C
mm39_v1_chr15_-_101268036_101268050	0.681563	AAUACUG	ENSMUST00000077196.6|Krt80|ENSMUSG00000037185.10|keratin 80
mm39_v1_chr2_-_157408239_157408281	0.678012	AAUACUG	ENSMUST00000109528.9|Blcap|ENSMUSG00000067787.11|bladder cancer associated protein	ENSMUST00000088494.3|Blcap|ENSMUSG00000067787.11|bladder cancer associated protein
mm39_v1_chr4_+_43875524_43875558	0.677046	AAUACUG	ENSMUST00000030198.7|Reck|ENSMUSG00000028476.14|reversion-inducing-cysteine-rich protein with kazal motifs
mm39_v1_chr5_-_121329385_121329501	0.676027	AAUACUG	ENSMUST00000054547.9|Ptpn11|ENSMUSG00000043733.15|protein tyrosine phosphatase, non-receptor type 11	ENSMUST00000100770.9|Ptpn11|ENSMUSG00000043733.15|protein tyrosine phosphatase, non-receptor type 11
mm39_v1_chr4_+_59805829_59805914	0.673791	AAUACUG	ENSMUST00000030080.7|Snx30|ENSMUSG00000028385.15|sorting nexin family member 30
mm39_v1_chr16_-_31019967_31020064	0.673448	AAUACUG	ENSMUST00000230614.2|Acap2|ENSMUSG00000049076.13|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	ENSMUST00000058033.9|Acap2|ENSMUSG00000049076.13|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm39_v1_chr9_+_32607301_32607417	0.669138	AAUACUG	ENSMUST00000034534.13|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000050797.14|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000184887.2|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain
mm39_v1_chr1_+_12762501_12762590	0.669047	AAUACUG	ENSMUST00000177608.8|Sulf1|ENSMUSG00000016918.16|sulfatase 1	ENSMUST00000180062.8|Sulf1|ENSMUSG00000016918.16|sulfatase 1
mm39_v1_chr5_-_147662798_147662833	0.665228	AAUACUG	ENSMUST00000110529.6|Flt1|ENSMUSG00000029648.14|FMS-like tyrosine kinase 1	ENSMUST00000031653.12|Flt1|ENSMUSG00000029648.14|FMS-like tyrosine kinase 1
mm39_v1_chr17_-_81035453_81035522	0.655787	AAUACUG	ENSMUST00000234133.2|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3	ENSMUST00000112389.9|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3	ENSMUST00000025089.9|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3
mm39_v1_chr1_+_82817170_82817239	0.648705	AAUACUG	ENSMUST00000189220.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000113444.8|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr6_-_148732946_148732992	0.644373	AAUACUG	ENSMUST00000048418.14|Ipo8|ENSMUSG00000040029.16|importin 8
mm39_v1_chr19_+_44919585_44919613	0.641163	AAUACUG	ENSMUST00000096053.5|Slf2|ENSMUSG00000036097.9|SMC5-SMC6 complex localization factor 2
mm39_v1_chr1_-_34882131_34882148	0.640834	AAUACUG	ENSMUST00000167518.8|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B	ENSMUST00000047534.12|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B
mm39_v1_chr9_+_47441471_47441671	0.630269	AAUACUG	ENSMUST00000114548.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000152459.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000143026.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000085909.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000114547.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000239368.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000214542.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000034581.4|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1
mm39_v1_chr11_-_89193158_89193158	0.627636	AAUACUG	ENSMUST00000061728.5|Nog|ENSMUSG00000048616.5|noggin
mm39_v1_chr12_-_111679618_111679691	0.626737	AAUACUG	ENSMUST00000054636.7|Bag5|ENSMUSG00000049792.7|BCL2-associated athanogene 5
mm39_v1_chr9_+_102594867_102594929	0.623709	AAUACUG	ENSMUST00000035121.14|Amotl2|ENSMUSG00000032531.16|angiomotin-like 2
mm39_v1_chr14_-_7648948_7648998	0.617808	AAUACUG	ENSMUST00000112630.9|Nek10|ENSMUSG00000042567.21|NIMA (never in mitosis gene a)- related kinase 10	ENSMUST00000112631.9|Nek10|ENSMUSG00000042567.21|NIMA (never in mitosis gene a)- related kinase 10
mm39_v1_chr18_+_10325148_10325222	0.616818	AAUACUG	ENSMUST00000048977.16|Greb1l|ENSMUSG00000042942.19|growth regulation by estrogen in breast cancer-like
mm39_v1_chr19_+_45352173_45352274	0.613322	AAUACUG	ENSMUST00000223764.2|Btrc|ENSMUSG00000025217.16|beta-transducin repeat containing protein	ENSMUST00000065601.13|Btrc|ENSMUSG00000025217.16|beta-transducin repeat containing protein	ENSMUST00000224102.2|Btrc|ENSMUSG00000025217.16|beta-transducin repeat containing protein	ENSMUST00000111936.4|Btrc|ENSMUSG00000025217.16|beta-transducin repeat containing protein
mm39_v1_chr4_-_118037240_118037251	0.609172	AAUACUG	ENSMUST00000106406.9|Kdm4a|ENSMUSG00000033326.16|lysine (K)-specific demethylase 4A
mm39_v1_chr17_-_88105422_88105476	0.609052	AAUACUG	ENSMUST00000055221.9|Kcnk12|ENSMUSG00000050138.9|potassium channel, subfamily K, member 12
mm39_v1_chr15_-_28025920_28025970	0.607475	AAUACUG	ENSMUST00000090247.7|Trio|ENSMUSG00000022263.11|triple functional domain (PTPRF interacting)
mm39_v1_chr2_-_52314837_52314928	0.592783	AAUACUG	ENSMUST00000036541.8|Arl5a|ENSMUSG00000036093.8|ADP-ribosylation factor-like 5A
mm39_v1_chr2_+_126850613_126850680	0.591105	AAUACUG	ENSMUST00000110394.8|Ap4e1|ENSMUSG00000001998.16|adaptor-related protein complex AP-4, epsilon 1	ENSMUST00000002063.15|Ap4e1|ENSMUSG00000001998.16|adaptor-related protein complex AP-4, epsilon 1
mm39_v1_chr13_+_118851214_118851238	0.582801	AAUACUG	ENSMUST00000022246.9|Fgf10|ENSMUSG00000021732.15|fibroblast growth factor 10
mm39_v1_chr11_+_74661647_74661733	0.581175	AAUACUG	ENSMUST00000010698.13|Mettl16|ENSMUSG00000010554.15|methyltransferase like 16	ENSMUST00000141755.8|Mettl16|ENSMUSG00000010554.15|methyltransferase like 16
mm39_v1_chr7_-_63588610_63588704	0.57177	AAUACUG	ENSMUST00000063694.10|Klf13|ENSMUSG00000052040.11|Kruppel-like factor 13
mm39_v1_chr18_+_65022035_65022105	0.571707	AAUACUG	ENSMUST00000224385.3|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like	ENSMUST00000163516.9|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr4_-_126323291_126323349	0.571705	AAUACUG	ENSMUST00000069097.13|Ago3|ENSMUSG00000028842.16|argonaute RISC catalytic subunit 3
mm39_v1_chr7_-_99629637_99629683	0.570479	AAUACUG	ENSMUST00000080817.6|Rnf169|ENSMUSG00000058761.6|ring finger protein 169
mm39_v1_chr6_-_120015608_120015660	0.570077	AAUACUG	ENSMUST00000177761.8|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000088644.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000060043.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chr3_-_144275897_144275989	0.566911	AAUACUG	ENSMUST00000043325.9|Hs2st1|ENSMUSG00000040151.10|heparan sulfate 2-O-sulfotransferase 1
mm39_v1_chr6_+_15720653_15720747	0.5658	AAUACUG	ENSMUST00000101663.10|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000190255.7|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000189359.7|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000125326.8|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing
mm39_v1_chr5_-_123822351_123822442	0.555618	AAUACUG	ENSMUST00000111564.8|Clip1|ENSMUSG00000049550.18|CAP-GLY domain containing linker protein 1	ENSMUST00000063905.12|Clip1|ENSMUSG00000049550.18|CAP-GLY domain containing linker protein 1
mm39_v1_chrX_+_74557905_74557946	0.553665	AAUACUG	ENSMUST00000114070.10|Vbp1|ENSMUSG00000031197.12|von Hippel-Lindau binding protein 1	ENSMUST00000033540.6|Vbp1|ENSMUSG00000031197.12|von Hippel-Lindau binding protein 1
mm39_v1_chr10_-_120815232_120815279	0.553544	AAUACUG	ENSMUST00000119944.8|Lemd3|ENSMUSG00000048661.15|LEM domain containing 3	ENSMUST00000119093.2|Lemd3|ENSMUSG00000048661.15|LEM domain containing 3
mm39_v1_chr12_+_24881582_24881657	0.549984	AAUACUG	ENSMUST00000221952.2|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2	ENSMUST00000078902.8|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2	ENSMUST00000110942.11|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2
mm39_v1_chr2_-_18397547_18397649	0.549656	AAUACUG	ENSMUST00000091418.12|Dnajc1|ENSMUSG00000026740.13|DnaJ heat shock protein family (Hsp40) member C1	ENSMUST00000166495.8|Dnajc1|ENSMUSG00000026740.13|DnaJ heat shock protein family (Hsp40) member C1
mm39_v1_chr10_+_41685931_41685959	0.549119	AAUACUG	ENSMUST00000099931.11|Sesn1|ENSMUSG00000038332.14|sestrin 1
mm39_v1_chr5_+_123214332_123214418	0.547023	AAUACUG	ENSMUST00000067505.15|Tmem120b|ENSMUSG00000054434.15|transmembrane protein 120B	ENSMUST00000111619.10|Tmem120b|ENSMUSG00000054434.15|transmembrane protein 120B	ENSMUST00000160344.2|Tmem120b|ENSMUSG00000054434.15|transmembrane protein 120B
mm39_v1_chr3_-_31023547_31023573	0.544536	AAUACUG	ENSMUST00000064718.12|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000177992.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000129817.9|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000168645.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000108255.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000099163.5|Phc3|ENSMUSG00000037652.16|polyhomeotic 3
mm39_v1_chr14_-_45767575_45767640	0.544425	AAUACUG	ENSMUST00000045905.15|Fermt2|ENSMUSG00000037712.18|fermitin family member 2
mm39_v1_chr17_-_46867083_46867114	0.540966	AAUACUG	ENSMUST00000015749.7|Srf|ENSMUSG00000015605.7|serum response factor
mm39_v1_chr6_+_56691875_56691937	0.534028	AAUACUG	ENSMUST00000031805.11|Avl9|ENSMUSG00000029787.11|AVL9 cell migration associated	ENSMUST00000177249.3|Avl9|ENSMUSG00000029787.11|AVL9 cell migration associated
mm39_v1_chr17_-_48716756_48716934	0.526408	AAUACUG	ENSMUST00000160319.8|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000159535.2|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000078800.13|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000046719.14|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000162460.8|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha
mm39_v1_chr5_+_144037171_144037254	0.5231	AAUACUG	ENSMUST00000041804.8|Lmtk2|ENSMUSG00000038970.8|lemur tyrosine kinase 2
mm39_v1_chr15_+_12117899_12118008	0.513436	AAUACUG	ENSMUST00000122941.8|Zfr|ENSMUSG00000022201.17|zinc finger RNA binding protein
mm39_v1_chr6_+_29348068_29348123	0.498561	AAUACUG	ENSMUST00000173216.8|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000173694.5|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000172974.8|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000031779.17|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000090481.14|Calu|ENSMUSG00000029767.17|calumenin
mm39_v1_chr13_+_49495025_49495099	0.493723	AAUACUG	ENSMUST00000048544.14|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110084.4|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110085.11|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2
mm39_v1_chr19_+_3817396_3817523	0.479496	AAUACUG	ENSMUST00000052699.13|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113974.11|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113972.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113973.8|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113977.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113968.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B
mm39_v1_chr4_-_135000109_135000130	0.467103	AAUACUG	ENSMUST00000037099.9|Clic4|ENSMUSG00000037242.9|chloride intracellular channel 4 (mitochondrial)
mm39_v1_chr16_+_33005426_33005537	0.46632	AAUACUG	ENSMUST00000232100.2|Osbpl11|ENSMUSG00000022807.10|oxysterol binding protein-like 11	ENSMUST00000232181.2|Osbpl11|ENSMUSG00000022807.10|oxysterol binding protein-like 11	ENSMUST00000039733.10|Osbpl11|ENSMUSG00000022807.10|oxysterol binding protein-like 11
mm39_v1_chr12_-_85386120_85386169	0.463586	AAUACUG	ENSMUST00000040992.8|Nek9|ENSMUSG00000034290.10|NIMA (never in mitosis gene a)-related expressed kinase 9
mm39_v1_chr11_+_101443674_101443727	0.457479	AAUACUG	ENSMUST00000107213.8|Nbr1|ENSMUSG00000017119.21|NBR1, autophagy cargo receptor	ENSMUST00000107208.8|Nbr1|ENSMUSG00000017119.21|NBR1, autophagy cargo receptor	ENSMUST00000107212.8|Nbr1|ENSMUSG00000017119.21|NBR1, autophagy cargo receptor	ENSMUST00000127421.8|Nbr1|ENSMUSG00000017119.21|NBR1, autophagy cargo receptor
mm39_v1_chrX_+_52001108_52001238	0.456644	AAUACUG	ENSMUST00000078944.13|Phf6|ENSMUSG00000025626.17|PHD finger protein 6	ENSMUST00000101587.10|Phf6|ENSMUSG00000025626.17|PHD finger protein 6	ENSMUST00000154864.4|Phf6|ENSMUSG00000025626.17|PHD finger protein 6
mm39_v1_chr5_-_102217770_102217807	0.44934	AAUACUG	ENSMUST00000053177.14|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3	ENSMUST00000174698.2|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3
mm39_v1_chr8_+_85696216_85696282	0.449337	AAUACUG	ENSMUST00000109734.8|Prdx2|ENSMUSG00000005161.16|peroxiredoxin 2	ENSMUST00000005292.15|Prdx2|ENSMUSG00000005161.16|peroxiredoxin 2
mm39_v1_chr10_-_13350106_13350185	0.44827	AAUACUG	ENSMUST00000105545.12|Phactr2|ENSMUSG00000062866.17|phosphatase and actin regulator 2
mm39_v1_chr3_-_37366567_37366615	0.434299	AAUACUG	ENSMUST00000075537.7|Cetn4|ENSMUSG00000045031.19|centrin 4	ENSMUST00000071400.13|Cetn4|ENSMUSG00000045031.19|centrin 4	ENSMUST00000102955.11|Cetn4|ENSMUSG00000045031.19|centrin 4	ENSMUST00000140956.8|Cetn4|ENSMUSG00000045031.19|centrin 4
mm39_v1_chr4_-_154181562_154181630	0.429683	AAUACUG	ENSMUST00000105643.8|Trp73|ENSMUSG00000029026.18|transformation related protein 73	ENSMUST00000133533.8|Trp73|ENSMUSG00000029026.18|transformation related protein 73	ENSMUST00000097762.11|Trp73|ENSMUSG00000029026.18|transformation related protein 73
mm39_v1_chr2_-_5900130_5900243	0.420737	AAUACUG	ENSMUST00000026926.5|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)	ENSMUST00000193792.6|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)	ENSMUST00000102981.10|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)
mm39_v1_chr2_+_52747855_52747880	0.415606	AAUACUG	ENSMUST00000155586.9|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000090952.11|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000127122.9|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000049483.14|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000050719.13|Fmnl2|ENSMUSG00000036053.18|formin-like 2
mm39_v1_chr13_-_93636224_93636333	0.41494	AAUACUG	ENSMUST00000220513.2|Jmy|ENSMUSG00000021690.11|junction-mediating and regulatory protein	ENSMUST00000065537.9|Jmy|ENSMUSG00000021690.11|junction-mediating and regulatory protein
mm39_v1_chr10_-_81262948_81263021	0.414772	AAUACUG	ENSMUST00000078185.14|Nfic|ENSMUSG00000055053.19|nuclear factor I/C	ENSMUST00000020461.15|Nfic|ENSMUSG00000055053.19|nuclear factor I/C	ENSMUST00000105321.10|Nfic|ENSMUSG00000055053.19|nuclear factor I/C
mm39_v1_chr3_-_51468236_51468300	0.401572	AAUACUG	ENSMUST00000037141.9|Setd7|ENSMUSG00000037111.10|SET domain containing (lysine methyltransferase) 7
mm39_v1_chr18_-_20879461_20879479	0.400562	AAUACUG	ENSMUST00000070080.6|B4galt6|ENSMUSG00000056124.6|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6
mm39_v1_chr14_-_75185281_75185324	0.397502	AAUACUG	ENSMUST00000088970.7|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1	ENSMUST00000228252.2|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1
mm39_v1_chrX_+_111513971_111513971	0.394484	AAUACUG	ENSMUST00000071814.13|Zfp711|ENSMUSG00000025529.15|zinc finger protein 711
mm39_v1_chr6_+_140568366_140568389	0.381406	AAUACUG	ENSMUST00000032359.15|Aebp2|ENSMUSG00000030232.19|AE binding protein 2
mm39_v1_chrX_+_37278636_37278722	0.376289	AAUACUG	ENSMUST00000049740.3|Zbtb33|ENSMUSG00000048047.4|zinc finger and BTB domain containing 33	ENSMUST00000115142.3|Zbtb33|ENSMUSG00000048047.4|zinc finger and BTB domain containing 33	ENSMUST00000131124.2|Zbtb33|ENSMUSG00000048047.4|zinc finger and BTB domain containing 33
mm39_v1_chr10_-_40759307_40759307	0.375296	AAUACUG	ENSMUST00000044166.9|Cdc40|ENSMUSG00000038446.9|cell division cycle 40
mm39_v1_chr11_+_32592707_32592875	0.371106	AAUACUG	ENSMUST00000109366.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000093205.13|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000076383.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11
mm39_v1_chr12_+_86288626_86288711	0.366982	AAUACUG	ENSMUST00000221368.2|Gpatch2l|ENSMUSG00000021254.10|G patch domain containing 2 like	ENSMUST00000071106.6|Gpatch2l|ENSMUSG00000021254.10|G patch domain containing 2 like
mm39_v1_chr4_-_83404690_83404717	0.364924	AAUACUG	ENSMUST00000107214.9|Psip1|ENSMUSG00000028484.17|PC4 and SFRS1 interacting protein 1	ENSMUST00000107215.9|Psip1|ENSMUSG00000028484.17|PC4 and SFRS1 interacting protein 1	ENSMUST00000030207.15|Psip1|ENSMUSG00000028484.17|PC4 and SFRS1 interacting protein 1
mm39_v1_chr18_+_53995156_53995215	0.36139	AAUACUG	ENSMUST00000069597.8|Csnk1g3|ENSMUSG00000073563.4|casein kinase 1, gamma 3
mm39_v1_chrX_+_55500170_55500264	0.352425	AAUACUG	ENSMUST00000039374.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000101553.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000186445.7|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like
mm39_v1_chr2_+_121786444_121786498	0.341047	AAUACUG	ENSMUST00000036647.13|Ctdspl2|ENSMUSG00000033411.17|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm39_v1_chr7_+_63094489_63094510	0.333169	AAUACUG	ENSMUST00000058476.14|Otud7a|ENSMUSG00000033510.15|OTU domain containing 7A
mm39_v1_chrX_+_9751861_9751861	0.331236	AAUACUG	ENSMUST00000067529.9|Sytl5|ENSMUSG00000054453.12|synaptotagmin-like 5	ENSMUST00000086165.4|Sytl5|ENSMUSG00000054453.12|synaptotagmin-like 5
mm39_v1_chr4_-_148711453_148711492	0.324813	AAUACUG	ENSMUST00000165113.8|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000172073.8|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000105702.9|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000084125.10|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein
mm39_v1_chr2_+_31462780_31462841	0.323437	AAUACUG	ENSMUST00000137889.7|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000194386.6|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000055244.13|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3
mm39_v1_chr8_+_112667328_112667341	0.31681	AAUACUG	ENSMUST00000034428.8|Gabarapl2|ENSMUSG00000031950.8|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2
mm39_v1_chr18_-_62313019_62313057	0.308722	AAUACUG	ENSMUST00000053640.5|Adrb2|ENSMUSG00000045730.5|adrenergic receptor, beta 2
mm39_v1_chr16_+_56942050_56942066	0.303324	AAUACUG	ENSMUST00000166897.3|Tomm70a|ENSMUSG00000022752.10|translocase of outer mitochondrial membrane 70A
mm39_v1_chr1_+_43137852_43137871	0.296722	AAUACUG	ENSMUST00000010434.8|AI597479|ENSMUSG00000010290.8|expressed sequence AI597479
mm39_v1_chr15_-_38300937_38300959	0.292754	AAUACUG	ENSMUST00000227920.2|Klf10|ENSMUSG00000037465.11|Kruppel-like factor 10	ENSMUST00000074043.7|Klf10|ENSMUSG00000037465.11|Kruppel-like factor 10	ENSMUST00000228416.2|Klf10|ENSMUSG00000037465.11|Kruppel-like factor 10
mm39_v1_chr4_+_115696388_115696441	0.285914	AAUACUG	ENSMUST00000019677.12|Mknk1|ENSMUSG00000028708.17|MAP kinase-interacting serine/threonine kinase 1	ENSMUST00000144427.8|Mknk1|ENSMUSG00000028708.17|MAP kinase-interacting serine/threonine kinase 1	ENSMUST00000106513.10|Mknk1|ENSMUSG00000028708.17|MAP kinase-interacting serine/threonine kinase 1	ENSMUST00000130819.8|Mknk1|ENSMUSG00000028708.17|MAP kinase-interacting serine/threonine kinase 1	ENSMUST00000151203.8|Mknk1|ENSMUSG00000028708.17|MAP kinase-interacting serine/threonine kinase 1	ENSMUST00000140315.2|Mknk1|ENSMUSG00000028708.17|MAP kinase-interacting serine/threonine kinase 1
mm39_v1_chr5_+_89034666_89034684	0.28502	AAUACUG	ENSMUST00000148750.8|Slc4a4|ENSMUSG00000060961.17|solute carrier family 4 (anion exchanger), member 4
mm39_v1_chr16_-_55850027_55850102	0.282362	AAUACUG	ENSMUST00000122253.2|Pcnp|ENSMUSG00000071533.12|PEST proteolytic signal containing nuclear protein	ENSMUST00000114444.9|Pcnp|ENSMUSG00000071533.12|PEST proteolytic signal containing nuclear protein
mm39_v1_chr12_+_33479604_33479651	0.278992	AAUACUG	ENSMUST00000020877.9|Polr1f|ENSMUSG00000020561.9|RNA polymerase I subunit F
mm39_v1_chr8_+_12807001_12807028	0.277941	AAUACUG	ENSMUST00000033818.10|Atp11a|ENSMUSG00000031441.16|ATPase, class VI, type 11A	ENSMUST00000091237.12|Atp11a|ENSMUSG00000031441.16|ATPase, class VI, type 11A
mm39_v1_chr14_+_29690265_29690320	0.268591	AAUACUG	ENSMUST00000112268.4|Selenok|ENSMUSG00000042682.11|selenoprotein K
mm39_v1_chrX_-_168103266_168103379	0.264124	AAUACUG	ENSMUST00000033717.9|Hccs|ENSMUSG00000031352.11|holocytochrome c synthetase	ENSMUST00000112115.2|Hccs|ENSMUSG00000031352.11|holocytochrome c synthetase
mm39_v1_chr11_+_105927698_105927716	0.258118	AAUACUG	ENSMUST00000058438.9|Dcaf7|ENSMUSG00000049354.9|DDB1 and CUL4 associated factor 7
mm39_v1_chr15_+_81284333_81284417	0.24942	AAUACUG	ENSMUST00000163754.9|Xpnpep3|ENSMUSG00000022401.13|X-prolyl aminopeptidase 3, mitochondrial	ENSMUST00000041609.11|Xpnpep3|ENSMUSG00000022401.13|X-prolyl aminopeptidase 3, mitochondrial
mm39_v1_chr10_-_67120959_67121093	0.247239	AAUACUG	ENSMUST00000159002.2|Nrbf2|ENSMUSG00000075000.12|nuclear receptor binding factor 2	ENSMUST00000077839.13|Nrbf2|ENSMUSG00000075000.12|nuclear receptor binding factor 2
mm39_v1_chr9_+_107879700_107879879	0.24588	AAUACUG	ENSMUST00000035214.11|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1	ENSMUST00000176854.7|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1	ENSMUST00000175874.2|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1
mm39_v1_chr2_+_91560472_91560570	0.24158	AAUACUG	ENSMUST00000099712.10|Ambra1|ENSMUSG00000040506.17|autophagy/beclin 1 regulator 1	ENSMUST00000111317.9|Ambra1|ENSMUSG00000040506.17|autophagy/beclin 1 regulator 1	ENSMUST00000111316.9|Ambra1|ENSMUSG00000040506.17|autophagy/beclin 1 regulator 1	ENSMUST00000045705.14|Ambra1|ENSMUSG00000040506.17|autophagy/beclin 1 regulator 1
mm39_v1_chr1_-_155293075_155293104	0.240006	AAUACUG	ENSMUST00000027741.12|Xpr1|ENSMUSG00000026469.15|xenotropic and polytropic retrovirus receptor 1
mm39_v1_chr17_+_29768757_29768773	0.228506	AAUACUG	ENSMUST00000048677.9|Tbc1d22b|ENSMUSG00000042203.9|TBC1 domain family, member 22B	ENSMUST00000150388.3|Gm28052|ENSMUSG00000099329.3|predicted gene, 28052
mm39_v1_chr15_-_103148239_103148297	0.22517	AAUACUG	ENSMUST00000118152.8|Cbx5|ENSMUSG00000009575.15|chromobox 5
mm39_v1_chr1_-_9818601_9818676	0.219515	AAUACUG	ENSMUST00000057438.7|Vcpip1|ENSMUSG00000045210.9|valosin containing protein (p97)/p47 complex interacting protein 1
mm39_v1_chr11_+_57995055_57995192	0.211162	AAUACUG	ENSMUST00000108843.8|Cnot8|ENSMUSG00000020515.14|CCR4-NOT transcription complex, subunit 8	ENSMUST00000134896.2|Cnot8|ENSMUSG00000020515.14|CCR4-NOT transcription complex, subunit 8
mm39_v1_chr4_+_140875222_140875282	0.210886	AAUACUG	ENSMUST00000030757.10|Fbxo42|ENSMUSG00000028920.10|F-box protein 42
mm39_v1_chr1_-_153208477_153208566	0.205586	AAUACUG	ENSMUST00000027752.15|Lamc1|ENSMUSG00000026478.15|laminin, gamma 1
mm39_v1_chr12_+_65012564_65012714	0.170668	AAUACUG	ENSMUST00000066296.9|Togaram1|ENSMUSG00000035614.12|TOG array regulator of axonemal microtubules 1	ENSMUST00000223166.2|Togaram1|ENSMUSG00000035614.12|TOG array regulator of axonemal microtubules 1
mm39_v1_chr17_-_80022463_80022476	0.170059	AAUACUG	ENSMUST00000024894.2|Cyp1b1|ENSMUSG00000024087.5|cytochrome P450, family 1, subfamily b, polypeptide 1
mm39_v1_chr11_-_108234743_108234782	0.169044	AAUACUG	ENSMUST00000059595.11|Prkca|ENSMUSG00000050965.15|protein kinase C, alpha
mm39_v1_chr18_-_84969601_84969661	0.167423	AAUACUG	ENSMUST00000025547.4|Timm21|ENSMUSG00000024645.6|translocase of inner mitochondrial membrane 21
mm39_v1_chr6_-_30693675_30693748	0.160601	AAUACUG	ENSMUST00000169422.8|Cep41|ENSMUSG00000029790.17|centrosomal protein 41	ENSMUST00000115131.8|Cep41|ENSMUSG00000029790.17|centrosomal protein 41	ENSMUST00000115130.3|Cep41|ENSMUSG00000029790.17|centrosomal protein 41	ENSMUST00000031810.15|Cep41|ENSMUSG00000029790.17|centrosomal protein 41
mm39_v1_chr13_-_25015392_25015500	0.155886	AAUACUG	ENSMUST00000006900.7|Acot13|ENSMUSG00000006717.8|acyl-CoA thioesterase 13
mm39_v1_chr9_-_50920236_50920380	0.152999	AAUACUG	ENSMUST00000176824.8|Sik2|ENSMUSG00000037112.17|salt inducible kinase 2	ENSMUST00000176663.8|Sik2|ENSMUSG00000037112.17|salt inducible kinase 2	ENSMUST00000041375.11|Sik2|ENSMUSG00000037112.17|salt inducible kinase 2
mm39_v1_chr12_-_12991828_12991915	0.151801	AAUACUG	ENSMUST00000043396.15|Mycn|ENSMUSG00000037169.16|v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived
mm39_v1_chr11_-_98084086_98084132	0.150726	AAUACUG	ENSMUST00000092735.12|Med1|ENSMUSG00000018160.16|mediator complex subunit 1	ENSMUST00000107545.9|Med1|ENSMUSG00000018160.16|mediator complex subunit 1
mm39_v1_chr11_+_75570085_75570167	0.144386	AAUACUG	ENSMUST00000017920.14|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000108426.8|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000108425.8|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000093115.4|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog
mm39_v1_chr1_+_55170390_55170409	0.139757	AAUACUG	ENSMUST00000159311.8|Mob4|ENSMUSG00000025979.14|MOB family member 4, phocein	ENSMUST00000162364.8|Mob4|ENSMUSG00000025979.14|MOB family member 4, phocein
mm39_v1_chr6_+_22288220_22288287	0.138196	AAUACUG	ENSMUST00000128245.8|Wnt16|ENSMUSG00000029671.16|wingless-type MMTV integration site family, member 16	ENSMUST00000031681.10|Wnt16|ENSMUSG00000029671.16|wingless-type MMTV integration site family, member 16	ENSMUST00000148639.2|Wnt16|ENSMUSG00000029671.16|wingless-type MMTV integration site family, member 16
mm39_v1_chr1_+_64571942_64572013	0.13617	AAUACUG	ENSMUST00000171164.8|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000187811.7|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000049932.12|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000087366.11|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1
mm39_v1_chr6_-_94677118_94677157	0.13324	AAUACUG	ENSMUST00000101126.3|Lrig1|ENSMUSG00000030029.15|leucine-rich repeats and immunoglobulin-like domains 1	ENSMUST00000032105.11|Lrig1|ENSMUSG00000030029.15|leucine-rich repeats and immunoglobulin-like domains 1
mm39_v1_chr9_+_13739003_13739075	0.130914	AAUACUG	ENSMUST00000059579.12|Fam76b|ENSMUSG00000037808.14|family with sequence similarity 76, member B
mm39_v1_chr8_+_69333143_69333216	0.123129	AAUACUG	ENSMUST00000015712.15|Lpl|ENSMUSG00000015568.17|lipoprotein lipase
mm39_v1_chr1_+_65225834_65225881	0.110013	AAUACUG	ENSMUST00000081154.14|Pikfyve|ENSMUSG00000025949.17|phosphoinositide kinase, FYVE type zinc finger containing
mm39_v1_chr7_-_34353767_34353823	0.106148	AAUACUG	ENSMUST00000206501.2|Kctd15|ENSMUSG00000030499.10|potassium channel tetramerisation domain containing 15	ENSMUST00000108069.8|Kctd15|ENSMUSG00000030499.10|potassium channel tetramerisation domain containing 15
mm39_v1_chr7_+_65759198_65759263	0.104628	AAUACUG	ENSMUST00000036372.8|Chsy1|ENSMUSG00000032640.11|chondroitin sulfate synthase 1
mm39_v1_chr2_+_128809268_128809363	0.101022	AAUACUG	ENSMUST00000110320.9|Zc3h6|ENSMUSG00000042851.18|zinc finger CCCH type containing 6	ENSMUST00000110319.3|Zc3h6|ENSMUSG00000042851.18|zinc finger CCCH type containing 6
mm39_v1_chr8_-_26609153_26609260	0.0999583	AAUACUG	ENSMUST00000037182.14|Hook3|ENSMUSG00000037234.18|hook microtubule tethering protein 3
mm39_v1_chr12_+_81906738_81906814	0.0989366	AAUACUG	ENSMUST00000221721.2|Pcnx|ENSMUSG00000021140.10|pecanex homolog	ENSMUST00000021567.6|Pcnx|ENSMUSG00000021140.10|pecanex homolog
mm39_v1_chr17_+_36227433_36227458	0.0960707	AAUACUG	ENSMUST00000087211.9|Ppp1r10|ENSMUSG00000039220.17|protein phosphatase 1, regulatory subunit 10
mm39_v1_chr5_-_122492223_122492300	0.095569	AAUACUG	ENSMUST00000117263.8|Rad9b|ENSMUSG00000038569.14|RAD9 checkpoint clamp component B	ENSMUST00000049009.7|Rad9b|ENSMUSG00000038569.14|RAD9 checkpoint clamp component B
mm39_v1_chr10_+_80591030_80591073	0.0849698	AAUACUG	ENSMUST00000105336.9|Dot1l|ENSMUSG00000061589.15|DOT1-like, histone H3 methyltransferase (S. cerevisiae)
mm39_v1_chr9_-_65815958_65816098	0.0745247	AAUACUG	ENSMUST00000119245.8|Trip4|ENSMUSG00000032386.16|thyroid hormone receptor interactor 4	ENSMUST00000134338.8|Trip4|ENSMUSG00000032386.16|thyroid hormone receptor interactor 4	ENSMUST00000179395.8|Trip4|ENSMUSG00000032386.16|thyroid hormone receptor interactor 4
mm39_v1_chr2_+_155223728_155223804	0.071739	AAUACUG	ENSMUST00000043237.14|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2	ENSMUST00000174685.8|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2
mm39_v1_chr4_-_108690805_108690827	0.0675843	AAUACUG	ENSMUST00000102742.11|Btf3l4|ENSMUSG00000028568.17|basic transcription factor 3-like 4
mm39_v1_chr12_-_54909568_54909706	0.0651648	AAUACUG	ENSMUST00000078124.8|Cfl2|ENSMUSG00000062929.9|cofilin 2, muscle
mm39_v1_chr7_+_27290969_27290981	0.0638564	AAUACUG	ENSMUST00000108344.9|Akt2|ENSMUSG00000004056.16|thymoma viral proto-oncogene 2
mm39_v1_chr8_+_12445287_12445295	0.0628226	AAUACUG	ENSMUST00000180353.2|Sox1|ENSMUSG00000096014.2|SRY (sex determining region Y)-box 1
mm39_v1_chr19_-_46384158_46384199	0.0604881	AAUACUG	ENSMUST00000237742.2|Actr1a|ENSMUSG00000025228.6|ARP1 actin-related protein 1A, centractin alpha	ENSMUST00000040270.6|Actr1a|ENSMUSG00000025228.6|ARP1 actin-related protein 1A, centractin alpha
mm39_v1_chr8_+_91555449_91555470	0.0562017	AAUACUG	ENSMUST00000109614.9|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr14_-_57983511_57983604	0.0513524	AAUACUG	ENSMUST00000173990.8|Lats2|ENSMUSG00000021959.17|large tumor suppressor 2	ENSMUST00000022531.14|Lats2|ENSMUSG00000021959.17|large tumor suppressor 2
mm39_v1_chr3_-_119576911_119577037	0.0439237	AAUACUG	ENSMUST00000197464.5|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000198403.2|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000029780.12|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2
mm39_v1_chr14_-_67246282_67246326	0.0422902	AAUACUG	ENSMUST00000111115.8|Bnip3l|ENSMUSG00000022051.16|BCL2/adenovirus E1B interacting protein 3-like	ENSMUST00000022634.9|Bnip3l|ENSMUSG00000022051.16|BCL2/adenovirus E1B interacting protein 3-like
mm39_v1_chr8_+_106937568_106937606	0.0422321	AAUACUG	ENSMUST00000071592.12|Prmt7|ENSMUSG00000060098.12|protein arginine N-methyltransferase 7
mm39_v1_chr16_+_51851588_51851705	0.0413626	AAUACUG	ENSMUST00000114471.3|Cblb|ENSMUSG00000022637.12|Casitas B-lineage lymphoma b
mm39_v1_chr1_-_132953068_132953154	0.035688	AAUACUG	ENSMUST00000186617.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067429.10|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067398.13|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000188090.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4
mm39_v1_chr15_-_81284244_81284294	0.0324717	AAUACUG	ENSMUST00000172107.8|St13|ENSMUSG00000022403.16|suppression of tumorigenicity 13	ENSMUST00000169204.2|St13|ENSMUSG00000022403.16|suppression of tumorigenicity 13	ENSMUST00000163382.2|St13|ENSMUSG00000022403.16|suppression of tumorigenicity 13
mm39_v1_chr10_-_121883196_121883227	0.0314167	AAUACUG	ENSMUST00000020322.12|Srgap1|ENSMUSG00000020121.16|SLIT-ROBO Rho GTPase activating protein 1	ENSMUST00000081688.13|Srgap1|ENSMUSG00000020121.16|SLIT-ROBO Rho GTPase activating protein 1
mm39_v1_chr7_-_90106375_90106437	0.0247461	AAUACUG	ENSMUST00000032844.7|Tmem126a|ENSMUSG00000030615.13|transmembrane protein 126A
mm39_v1_chr8_-_110464345_110464418	0.020459	AAUACUG	ENSMUST00000212605.2|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like	ENSMUST00000093162.4|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like	ENSMUST00000212726.2|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like
mm39_v1_chrX_+_158315666_158315751	0.00754975	AAUACUG	ENSMUST00000057180.13|Bclaf3|ENSMUSG00000044150.13|Bclaf1 and Thrap3 family member 3
mm39_v1_chr12_+_8724129_8724150	0.00553102	AAUACUG	ENSMUST00000111123.9|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000178015.8|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000020915.10|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2
mm39_v1_chr17_-_25493273_25493291	0.00330903	AAUACUG	ENSMUST00000172587.8|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I	ENSMUST00000049911.16|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I	ENSMUST00000173713.8|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I
mm39_v1_chr1_-_3741721_3741721	0.000715327	AAUACUG	ENSMUST00000070533.5|Xkr4|ENSMUSG00000051951.6|X-linked Kx blood group related 4
mm39_v1_chr1_-_13442658_13442681	0.00044735	AAUACUG	ENSMUST00000081713.11|Ncoa2|ENSMUSG00000005886.15|nuclear receptor coactivator 2
