mm39_v1_chr1_-_74974707_74974774	0.230708	AAUCUCU	ENSMUST00000094844.4|Cfap65|ENSMUSG00000047021.15|cilia and flagella associated protein 65
mm39_v1_chr5_-_122187884_122187947	0.141672	AAUCUCU	ENSMUST00000111752.10|Cux2|ENSMUSG00000042589.19|cut-like homeobox 2
mm39_v1_chr2_+_70392351_70392386	0.120829	AAUCUCU	ENSMUST00000094934.11|Gad1|ENSMUSG00000070880.11|glutamate decarboxylase 1
mm39_v1_chr9_+_25163735_25163812	0.11222	AAUCUCU	ENSMUST00000115272.9|Septin7|ENSMUSG00000001833.18|septin 7	ENSMUST00000165594.4|Septin7|ENSMUSG00000001833.18|septin 7
mm39_v1_chr3_-_152687877_152687888	0.100715	AAUCUCU	ENSMUST00000044278.6|St6galnac5|ENSMUSG00000039037.6|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
mm39_v1_chr19_-_7083094_7083094	0.0957229	AAUCUCU	ENSMUST00000113383.4|Flrt1|ENSMUSG00000047787.9|fibronectin leucine rich transmembrane protein 1
mm39_v1_chr14_-_50020788_50020848	0.0831064	AAUCUCU	ENSMUST00000118129.2|Armh4|ENSMUSG00000036242.16|armadillo-like helical domain containing 4	ENSMUST00000036972.14|Armh4|ENSMUSG00000036242.16|armadillo-like helical domain containing 4
mm39_v1_chr15_-_89726063_89726140	0.0831007	AAUCUCU	ENSMUST00000029441.4|Syt10|ENSMUSG00000063260.3|synaptotagmin X
mm39_v1_chr10_-_102326286_102326347	0.0771124	AAUCUCU	ENSMUST00000020040.5|Nts|ENSMUSG00000019890.5|neurotensin
mm39_v1_chr14_+_111912529_111912556	0.0769326	AAUCUCU	ENSMUST00000042767.9|Slitrk5|ENSMUSG00000033214.11|SLIT and NTRK-like family, member 5
mm39_v1_chr17_+_45834344_45834378	0.0765225	AAUCUCU	ENSMUST00000113547.2|Tcte1|ENSMUSG00000023949.8|t-complex-associated testis expressed 1
mm39_v1_chr1_+_140173787_140173945	0.072352	AAUCUCU	ENSMUST00000239229.2|Kcnt2|ENSMUSG00000052726.17|potassium channel, subfamily T, member 2	ENSMUST00000120709.8|Kcnt2|ENSMUSG00000052726.17|potassium channel, subfamily T, member 2	ENSMUST00000120796.8|Kcnt2|ENSMUSG00000052726.17|potassium channel, subfamily T, member 2	ENSMUST00000119786.8|Kcnt2|ENSMUSG00000052726.17|potassium channel, subfamily T, member 2
mm39_v1_chr1_-_173195236_173195261	0.0670761	AAUCUCU	ENSMUST00000005470.5|Cadm3|ENSMUSG00000005338.15|cell adhesion molecule 3	ENSMUST00000111220.8|Cadm3|ENSMUSG00000005338.15|cell adhesion molecule 3
mm39_v1_chrX_-_143471176_143471176	0.0603848	AAUCUCU	ENSMUST00000040184.4|Trpc5|ENSMUSG00000041710.5|transient receptor potential cation channel, subfamily C, member 5
mm39_v1_chr10_+_84674008_84674016	0.0537732	AAUCUCU	ENSMUST00000095388.5|Rfx4|ENSMUSG00000020037.16|regulatory factor X, 4 (influences HLA class II expression)
mm39_v1_chr10_-_9550907_9550987	0.0516253	AAUCUCU	ENSMUST00000100070.5|Samd5|ENSMUSG00000060487.8|sterile alpha motif domain containing 5
mm39_v1_chrX_-_50770580_50770580	0.0512134	AAUCUCU	ENSMUST00000088172.12|Hs6st2|ENSMUSG00000062184.12|heparan sulfate 6-O-sulfotransferase 2
mm39_v1_chr11_-_90281721_90281753	0.0508692	AAUCUCU	ENSMUST00000004051.8|Hlf|ENSMUSG00000003949.17|hepatic leukemia factor
mm39_v1_chr8_-_45835234_45835328	0.0377041	AAUCUCU	ENSMUST00000093526.13|Fam149a|ENSMUSG00000070044.16|family with sequence similarity 149, member A
mm39_v1_chr9_+_3532778_3532778	0.0353012	AAUCUCU	ENSMUST00000115733.3|Gucy1a2|ENSMUSG00000041624.11|guanylate cyclase 1, soluble, alpha 2
mm39_v1_chr6_-_134874778_134874888	0.0342645	AAUCUCU	ENSMUST00000165392.8|Gpr19|ENSMUSG00000032641.19|G protein-coupled receptor 19	ENSMUST00000204880.3|Gpr19|ENSMUSG00000032641.19|G protein-coupled receptor 19	ENSMUST00000203409.3|Gpr19|ENSMUSG00000032641.19|G protein-coupled receptor 19	ENSMUST00000046255.14|Gpr19|ENSMUSG00000032641.19|G protein-coupled receptor 19	ENSMUST00000111932.8|Gpr19|ENSMUSG00000032641.19|G protein-coupled receptor 19	ENSMUST00000149375.8|Gpr19|ENSMUSG00000032641.19|G protein-coupled receptor 19	ENSMUST00000116515.9|Gpr19|ENSMUSG00000032641.19|G protein-coupled receptor 19
mm39_v1_chr6_-_31540913_31540924	0.033529	AAUCUCU	ENSMUST00000026698.8|Podxl|ENSMUSG00000025608.10|podocalyxin-like
mm39_v1_chr10_-_39775182_39775266	0.0319327	AAUCUCU	ENSMUST00000178045.9|Mfsd4b4|ENSMUSG00000096687.9|major facilitator superfamily domain containing 4B4	ENSMUST00000178563.3|Mfsd4b4|ENSMUSG00000096687.9|major facilitator superfamily domain containing 4B4
mm39_v1_chrX_+_163219983_163220033	0.0313784	AAUCUCU	ENSMUST00000036858.11|Asb11|ENSMUSG00000031382.15|ankyrin repeat and SOCS box-containing 11
mm39_v1_chr7_+_105053775_105053829	0.0309388	AAUCUCU	ENSMUST00000033187.6|Cnga4|ENSMUSG00000030897.6|cyclic nucleotide gated channel alpha 4	ENSMUST00000210344.2|Cnga4|ENSMUSG00000030897.6|cyclic nucleotide gated channel alpha 4
mm39_v1_chr7_+_18946448_18946470	0.0288129	AAUCUCU	ENSMUST00000060225.6|Gpr4|ENSMUSG00000044317.8|G protein-coupled receptor 4
mm39_v1_chr13_+_77856801_77856857	0.0283552	AAUCUCU	ENSMUST00000163257.9|Fam172a|ENSMUSG00000064138.15|family with sequence similarity 172, member A	ENSMUST00000091459.12|Fam172a|ENSMUSG00000064138.15|family with sequence similarity 172, member A	ENSMUST00000099358.5|Fam172a|ENSMUSG00000064138.15|family with sequence similarity 172, member A	ENSMUST00000225623.2|Fam172a|ENSMUSG00000064138.15|family with sequence similarity 172, member A	ENSMUST00000224908.2|Fam172a|ENSMUSG00000064138.15|family with sequence similarity 172, member A
mm39_v1_chr3_-_144275897_144275989	0.0208551	AAUCUCU	ENSMUST00000043325.9|Hs2st1|ENSMUSG00000040151.10|heparan sulfate 2-O-sulfotransferase 1
mm39_v1_chr8_-_88531018_88531067	0.0207119	AAUCUCU	ENSMUST00000165770.9|Zfp423|ENSMUSG00000045333.16|zinc finger protein 423
mm39_v1_chr8_-_112580910_112580988	0.0197942	AAUCUCU	ENSMUST00000034432.7|Cfdp1|ENSMUSG00000031954.7|craniofacial development protein 1
mm39_v1_chr9_-_64928927_64928999	0.0196638	AAUCUCU	ENSMUST00000036615.7|Hacd3|ENSMUSG00000033629.7|3-hydroxyacyl-CoA dehydratase 3
mm39_v1_chr14_-_51134906_51134914	0.0190098	AAUCUCU	ENSMUST00000170855.2|Klhl33|ENSMUSG00000090799.3|kelch-like 33
mm39_v1_chr4_+_107659474_107659637	0.017601	AAUCUCU	ENSMUST00000106733.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238651.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000030356.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238421.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000126573.8|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238569.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000106732.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm39_v1_chr9_-_95393909_95394049	0.0168041	AAUCUCU	ENSMUST00000190019.2|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing	ENSMUST00000185515.7|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing	ENSMUST00000217176.2|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing	ENSMUST00000079659.12|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing	ENSMUST00000078374.13|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing
mm39_v1_chr2_-_71377088_71377103	0.0152126	AAUCUCU	ENSMUST00000024159.8|Dlx2|ENSMUSG00000023391.9|distal-less homeobox 2
mm39_v1_chr6_-_42574306_42574346	0.0138214	AAUCUCU	ENSMUST00000069023.4|Tcaf3|ENSMUSG00000018656.6|TRPM8 channel-associated factor 3
mm39_v1_chr5_+_73648368_73648452	0.0135366	AAUCUCU	ENSMUST00000113558.8|Dcun1d4|ENSMUSG00000051674.16|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	ENSMUST00000063882.12|Dcun1d4|ENSMUSG00000051674.16|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm39_v1_chr12_+_85335365_85335486	0.0127003	AAUCUCU	ENSMUST00000059341.5|Zc2hc1c|ENSMUSG00000045064.6|zinc finger, C2HC-type containing 1C
mm39_v1_chrX_-_103457431_103457463	0.0120047	AAUCUCU	ENSMUST00000033695.6|Abcb7|ENSMUSG00000031333.8|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm39_v1_chr4_-_83242490_83242505	0.011942	AAUCUCU	ENSMUST00000102823.10|Ttc39b|ENSMUSG00000038172.15|tetratricopeptide repeat domain 39B
mm39_v1_chr14_-_4808744_4808823	0.0118817	AAUCUCU	ENSMUST00000022303.17|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta	ENSMUST00000091471.12|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta
mm39_v1_chr5_+_34919078_34919124	0.0113777	AAUCUCU	ENSMUST00000080036.3|Htt|ENSMUSG00000029104.16|huntingtin
mm39_v1_chr8_-_85526653_85526912	0.0113142	AAUCUCU	ENSMUST00000126806.2|Nfix|ENSMUSG00000001911.17|nuclear factor I/X	ENSMUST00000076715.13|Nfix|ENSMUSG00000001911.17|nuclear factor I/X
mm39_v1_chr4_+_59805829_59805914	0.0102027	AAUCUCU	ENSMUST00000030080.7|Snx30|ENSMUSG00000028385.15|sorting nexin family member 30
mm39_v1_chr19_+_55304703_55304799	0.00964376	AAUCUCU	ENSMUST00000225529.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000223690.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000095950.3|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A
mm39_v1_chr10_-_14581203_14581304	0.00948482	AAUCUCU	ENSMUST00000149485.2|Vta1|ENSMUSG00000019868.17|vesicle (multivesicular body) trafficking 1	ENSMUST00000154132.8|Vta1|ENSMUSG00000019868.17|vesicle (multivesicular body) trafficking 1
mm39_v1_chr19_-_60215097_60215138	0.00921487	AAUCUCU	ENSMUST00000238054.2|Fam204a|ENSMUSG00000057858.9|family with sequence similarity 204, member A	ENSMUST00000065286.2|Fam204a|ENSMUSG00000057858.9|family with sequence similarity 204, member A
mm39_v1_chr14_+_28740162_28740183	0.00885877	AAUCUCU	ENSMUST00000055662.4|Lrtm1|ENSMUSG00000045776.4|leucine-rich repeats and transmembrane domains 1
mm39_v1_chr6_-_137626207_137626298	0.00875681	AAUCUCU	ENSMUST00000134630.6|Eps8|ENSMUSG00000015766.15|epidermal growth factor receptor pathway substrate 8	ENSMUST00000058210.13|Eps8|ENSMUSG00000015766.15|epidermal growth factor receptor pathway substrate 8	ENSMUST00000111878.8|Eps8|ENSMUSG00000015766.15|epidermal growth factor receptor pathway substrate 8
mm39_v1_chr6_-_148113872_148113889	0.00841568	AAUCUCU	ENSMUST00000136008.8|Ergic2|ENSMUSG00000030304.12|ERGIC and golgi 2
mm39_v1_chr10_+_111808569_111808710	0.00820701	AAUCUCU	ENSMUST00000163048.8|Krr1|ENSMUSG00000063334.17|KRR1, small subunit (SSU) processome component, homolog (yeast)	ENSMUST00000174653.2|Krr1|ENSMUSG00000063334.17|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm39_v1_chr6_-_97182509_97182608	0.00674417	AAUCUCU	ENSMUST00000164744.8|Uba3|ENSMUSG00000030061.17|ubiquitin-like modifier activating enzyme 3	ENSMUST00000089287.7|Uba3|ENSMUSG00000030061.17|ubiquitin-like modifier activating enzyme 3
mm39_v1_chr6_-_89339581_89339602	0.00419582	AAUCUCU	ENSMUST00000163139.8|Plxna1|ENSMUSG00000030084.12|plexin A1
mm39_v1_chr7_-_90106375_90106437	0.0035476	AAUCUCU	ENSMUST00000032844.7|Tmem126a|ENSMUSG00000030615.13|transmembrane protein 126A
mm39_v1_chr11_+_120123727_120123779	0.00341398	AAUCUCU	ENSMUST00000122148.8|Bahcc1|ENSMUSG00000039741.16|BAH domain and coiled-coil containing 1	ENSMUST00000044985.14|Bahcc1|ENSMUSG00000039741.16|BAH domain and coiled-coil containing 1
mm39_v1_chr10_+_4561974_4562075	0.00175431	AAUCUCU	ENSMUST00000105590.8|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)	ENSMUST00000067086.14|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)
mm39_v1_chr9_-_35028100_35028189	0.000217007	AAUCUCU	ENSMUST00000034537.8|St3gal4|ENSMUSG00000032038.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 4
mm39_v1_chr3_+_95041399_95041399	0.000202059	AAUCUCU	ENSMUST00000066386.6|Lysmd1|ENSMUSG00000053769.6|LysM, putative peptidoglycan-binding, domain containing 1
