mm39_v1_chr1_-_189902868_189902942	3.94809	ACAGUAU	ENSMUST00000177288.4|Prox1|ENSMUSG00000010175.14|prospero homeobox 1	ENSMUST00000175916.8|Prox1|ENSMUSG00000010175.14|prospero homeobox 1
mm39_v1_chr15_+_10177709_10177741	3.29384	ACAGUAU	ENSMUST00000124470.8|Prlr|ENSMUSG00000005268.21|prolactin receptor
mm39_v1_chr18_-_16942289_16942384	3.22806	ACAGUAU	ENSMUST00000025166.14|Cdh2|ENSMUSG00000024304.15|cadherin 2
mm39_v1_chr16_+_42727926_42728047	3.18962	ACAGUAU	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr7_+_89053562_89053609	3.12317	ACAGUAU	ENSMUST00000058755.5|Fzd4|ENSMUSG00000049791.5|frizzled class receptor 4
mm39_v1_chr13_+_81031512_81031543	3.04962	ACAGUAU	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr18_+_64473091_64473114	3.00526	ACAGUAU	ENSMUST00000175965.10|Onecut2|ENSMUSG00000045991.20|one cut domain, family member 2
mm39_v1_chr6_-_21851827_21852182	2.93475	ACAGUAU	ENSMUST00000202353.2|Tspan12|ENSMUSG00000029669.15|tetraspanin 12	ENSMUST00000134635.2|Tspan12|ENSMUSG00000029669.15|tetraspanin 12	ENSMUST00000123116.8|Tspan12|ENSMUSG00000029669.15|tetraspanin 12	ENSMUST00000120965.8|Tspan12|ENSMUSG00000029669.15|tetraspanin 12	ENSMUST00000143531.2|Tspan12|ENSMUSG00000029669.15|tetraspanin 12
mm39_v1_chr8_+_104828253_104828342	2.83591	ACAGUAU	ENSMUST00000034339.10|Cdh5|ENSMUSG00000031871.10|cadherin 5
mm39_v1_chr7_+_34818709_34818728	2.83521	ACAGUAU	ENSMUST00000205391.2|Cebpa|ENSMUSG00000034957.11|CCAAT/enhancer binding protein (C/EBP), alpha	ENSMUST00000042985.11|Cebpa|ENSMUSG00000034957.11|CCAAT/enhancer binding protein (C/EBP), alpha
mm39_v1_chr9_+_68561042_68561068	2.56783	ACAGUAU	ENSMUST00000034766.14|Rora|ENSMUSG00000032238.18|RAR-related orphan receptor alpha
mm39_v1_chr15_+_85619958_85620010	2.46908	ACAGUAU	ENSMUST00000109422.8|Ppara|ENSMUSG00000022383.14|peroxisome proliferator activated receptor alpha
mm39_v1_chr3_+_82933383_82933522	2.21462	ACAGUAU	ENSMUST00000029630.15|Fga|ENSMUSG00000028001.17|fibrinogen alpha chain	ENSMUST00000166581.4|Fga|ENSMUSG00000028001.17|fibrinogen alpha chain
mm39_v1_chr1_-_165762469_165762605	2.17074	ACAGUAU	ENSMUST00000069609.12|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111427.9|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111426.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr17_+_79922329_79922473	2.10966	ACAGUAU	ENSMUST00000040368.3|Rmdn2|ENSMUSG00000036368.9|regulator of microtubule dynamics 2
mm39_v1_chr4_+_137589548_137589559	2.10908	ACAGUAU	ENSMUST00000102518.10|Ece1|ENSMUSG00000057530.15|endothelin converting enzyme 1
mm39_v1_chr16_-_45664664_45664744	2.10204	ACAGUAU	ENSMUST00000036355.13|Phldb2|ENSMUSG00000033149.18|pleckstrin homology like domain, family B, member 2
mm39_v1_chr18_+_36414122_36414204	2.04657	ACAGUAU	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chr16_-_50252703_50252772	2.00796	ACAGUAU	ENSMUST00000066037.13|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089399.11|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089404.10|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000138166.8|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing
mm39_v1_chr4_-_3938352_3938401	2.00072	ACAGUAU	ENSMUST00000003369.10|Plag1|ENSMUSG00000003282.10|pleiomorphic adenoma gene 1
mm39_v1_chr16_+_33504829_33504842	1.93994	ACAGUAU	ENSMUST00000152782.8|Heg1|ENSMUSG00000075254.13|heart development protein with EGF-like domains 1
mm39_v1_chr2_-_12306722_12306734	1.91862	ACAGUAU	ENSMUST00000028106.11|Itga8|ENSMUSG00000026768.11|integrin alpha 8
mm39_v1_chr2_+_109747984_109748003	1.88845	ACAGUAU	ENSMUST00000046548.14|Lgr4|ENSMUSG00000050199.14|leucine-rich repeat-containing G protein-coupled receptor 4	ENSMUST00000111037.3|Lgr4|ENSMUSG00000050199.14|leucine-rich repeat-containing G protein-coupled receptor 4
mm39_v1_chr10_-_95252712_95252723	1.88649	ACAGUAU	ENSMUST00000020215.16|Socs2|ENSMUSG00000020027.19|suppressor of cytokine signaling 2
mm39_v1_chr1_+_164076592_164076620	1.86889	ACAGUAU	ENSMUST00000044021.12|Slc19a2|ENSMUSG00000040918.13|solute carrier family 19 (thiamine transporter), member 2
mm39_v1_chr2_-_154916367_154916423	1.8349	ACAGUAU	ENSMUST00000137242.2|Ahcy|ENSMUSG00000027597.16|S-adenosylhomocysteine hydrolase	ENSMUST00000054607.16|Ahcy|ENSMUSG00000027597.16|S-adenosylhomocysteine hydrolase
mm39_v1_chr6_+_116241146_116241227	1.82918	ACAGUAU	ENSMUST00000112900.9|Zfand4|ENSMUSG00000042213.18|zinc finger, AN1-type domain 4	ENSMUST00000036503.14|Zfand4|ENSMUSG00000042213.18|zinc finger, AN1-type domain 4	ENSMUST00000223495.2|Zfand4|ENSMUSG00000042213.18|zinc finger, AN1-type domain 4
mm39_v1_chr7_+_114014509_114014522	1.81317	ACAGUAU	ENSMUST00000032909.9|Pde3b|ENSMUSG00000030671.10|phosphodiesterase 3B, cGMP-inhibited
mm39_v1_chr15_+_58761057_58761080	1.7836	ACAGUAU	ENSMUST00000036904.7|Rnf139|ENSMUSG00000037075.8|ring finger protein 139
mm39_v1_chr17_-_71158052_71158064	1.65236	ACAGUAU	ENSMUST00000186358.6|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr4_-_82423985_82424044	1.64758	ACAGUAU	ENSMUST00000107245.9|Nfib|ENSMUSG00000008575.18|nuclear factor I/B	ENSMUST00000107246.2|Nfib|ENSMUSG00000008575.18|nuclear factor I/B
mm39_v1_chrX_-_141173330_141173341	1.63002	ACAGUAU	ENSMUST00000112907.8|Acsl4|ENSMUSG00000031278.13|acyl-CoA synthetase long-chain family member 4
mm39_v1_chr2_-_104324745_104324809	1.62725	ACAGUAU	ENSMUST00000028600.14|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr19_+_27194757_27194825	1.62068	ACAGUAU	ENSMUST00000047645.13|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor	ENSMUST00000167487.8|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor
mm39_v1_chr2_+_103396638_103396698	1.61905	ACAGUAU	ENSMUST00000076212.4|Abtb2|ENSMUSG00000032724.6|ankyrin repeat and BTB (POZ) domain containing 2
mm39_v1_chr5_-_134776101_134776177	1.61512	ACAGUAU	ENSMUST00000015138.13|Eln|ENSMUSG00000029675.13|elastin
mm39_v1_chr2_-_63928339_63928367	1.6106	ACAGUAU	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr6_+_97783975_97784028	1.52932	ACAGUAU	ENSMUST00000203884.3|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor	ENSMUST00000043637.14|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor
mm39_v1_chr9_+_77661808_77661823	1.50298	ACAGUAU	ENSMUST00000034905.9|Gclc|ENSMUSG00000032350.10|glutamate-cysteine ligase, catalytic subunit
mm39_v1_chr18_-_58343423_58343559	1.48898	ACAGUAU	ENSMUST00000025497.8|Fbn2|ENSMUSG00000024598.10|fibrillin 2
mm39_v1_chrX_-_141749704_141749730	1.45822	ACAGUAU	ENSMUST00000041317.3|Ammecr1|ENSMUSG00000042225.4|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm39_v1_chr5_+_16758777_16758795	1.43653	ACAGUAU	ENSMUST00000030683.8|Hgf|ENSMUSG00000028864.8|hepatocyte growth factor
mm39_v1_chr13_-_99027544_99027571	1.43025	ACAGUAU	ENSMUST00000109399.9|Tnpo1|ENSMUSG00000009470.18|transportin 1
mm39_v1_chr10_-_70995485_70995537	1.41542	ACAGUAU	ENSMUST00000014473.6|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1	ENSMUST00000143791.8|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1
mm39_v1_chr2_-_84255602_84255755	1.40049	ACAGUAU	ENSMUST00000074262.9|Calcrl|ENSMUSG00000059588.14|calcitonin receptor-like
mm39_v1_chrX_+_137815171_137815187	1.37344	ACAGUAU	ENSMUST00000064937.14|Nrk|ENSMUSG00000052854.16|Nik related kinase	ENSMUST00000113052.8|Nrk|ENSMUSG00000052854.16|Nik related kinase
mm39_v1_chr4_+_97665843_97665870	1.36055	ACAGUAU	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr5_+_73071607_73071647	1.35345	ACAGUAU	ENSMUST00000144843.8|Slain2|ENSMUSG00000036087.19|SLAIN motif family, member 2
mm39_v1_chr8_+_109441276_109441276	1.32194	ACAGUAU	ENSMUST00000043896.10|Zfhx3|ENSMUSG00000038872.11|zinc finger homeobox 3
mm39_v1_chr15_+_38869415_38869443	1.29968	ACAGUAU	ENSMUST00000179165.9|Fzd6|ENSMUSG00000022297.16|frizzled class receptor 6
mm39_v1_chr14_-_30075424_30075492	1.2683	ACAGUAU	ENSMUST00000224198.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000238675.2|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000112249.10|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000224785.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm39_v1_chr1_-_165830160_165830182	1.26366	ACAGUAU	ENSMUST00000111429.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000176800.2|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000177358.8|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr14_+_67470884_67471035	1.23559	ACAGUAU	ENSMUST00000176161.8|Ebf2|ENSMUSG00000022053.14|early B cell factor 2
mm39_v1_chr11_+_16702203_16702215	1.19356	ACAGUAU	ENSMUST00000102884.10|Egfr|ENSMUSG00000020122.17|epidermal growth factor receptor	ENSMUST00000020329.13|Egfr|ENSMUSG00000020122.17|epidermal growth factor receptor
mm39_v1_chr12_+_81073573_81073602	1.18546	ACAGUAU	ENSMUST00000110347.9|Smoc1|ENSMUSG00000021136.14|SPARC related  modular calcium binding 1	ENSMUST00000021564.11|Smoc1|ENSMUSG00000021136.14|SPARC related  modular calcium binding 1	ENSMUST00000129362.2|Smoc1|ENSMUSG00000021136.14|SPARC related  modular calcium binding 1
mm39_v1_chr8_+_96078886_96078957	1.17827	ACAGUAU	ENSMUST00000034243.7|Mmp15|ENSMUSG00000031790.9|matrix metallopeptidase 15
mm39_v1_chr11_-_18968979_18968990	1.17691	ACAGUAU	ENSMUST00000144988.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr2_+_156681927_156681952	1.12974	ACAGUAU	ENSMUST00000081335.13|Tgif2|ENSMUSG00000062175.14|TGFB-induced factor homeobox 2
mm39_v1_chr9_-_31123083_31123120	1.09482	ACAGUAU	ENSMUST00000217641.2|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000072634.15|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000079758.9|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000213254.2|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2
mm39_v1_chr2_-_33321306_33321359	1.09336	ACAGUAU	ENSMUST00000113158.8|Zbtb34|ENSMUSG00000068966.11|zinc finger and BTB domain containing 34
mm39_v1_chr3_+_51323383_51323465	1.09088	ACAGUAU	ENSMUST00000029303.13|Naa15|ENSMUSG00000063273.12|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm39_v1_chr8_+_22966736_22966804	1.07786	ACAGUAU	ENSMUST00000067786.9|Slc20a2|ENSMUSG00000037656.10|solute carrier family 20, member 2
mm39_v1_chr19_-_34856853_34856864	1.07485	ACAGUAU	ENSMUST00000036584.13|Pank1|ENSMUSG00000033610.17|pantothenate kinase 1
mm39_v1_chr4_-_53159885_53159900	1.07429	ACAGUAU	ENSMUST00000030010.4|Abca1|ENSMUSG00000015243.5|ATP-binding cassette, sub-family A (ABC1), member 1
mm39_v1_chr6_+_112436466_112436565	1.05411	ACAGUAU	ENSMUST00000075477.8|Cav3|ENSMUSG00000062694.8|caveolin 3
mm39_v1_chr3_+_60408600_60408663	1.05378	ACAGUAU	ENSMUST00000099087.8|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr19_+_26582450_26582519	1.03815	ACAGUAU	ENSMUST00000176769.9|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000208163.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000025862.15|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000176030.8|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm39_v1_chr10_+_127478844_127478914	1.03629	ACAGUAU	ENSMUST00000092074.12|Stat6|ENSMUSG00000002147.19|signal transducer and activator of transcription 6	ENSMUST00000120279.2|Stat6|ENSMUSG00000002147.19|signal transducer and activator of transcription 6
mm39_v1_chr2_-_75534985_75535023	1.02678	ACAGUAU	ENSMUST00000102672.5|Nfe2l2|ENSMUSG00000015839.7|nuclear factor, erythroid derived 2, like 2
mm39_v1_chr7_-_115637970_115637985	1.019	ACAGUAU	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr5_+_43390513_43390580	1.01534	ACAGUAU	ENSMUST00000166713.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000169035.8|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000114065.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2
mm39_v1_chr19_+_41471067_41471128	1.01438	ACAGUAU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr8_-_37081091_37081102	1.01407	ACAGUAU	ENSMUST00000033923.14|Dlc1|ENSMUSG00000031523.17|deleted in liver cancer 1
mm39_v1_chr9_+_100525501_100525594	1.01275	ACAGUAU	ENSMUST00000146312.8|Stag1|ENSMUSG00000037286.16|stromal antigen 1	ENSMUST00000129269.8|Stag1|ENSMUSG00000037286.16|stromal antigen 1
mm39_v1_chr10_+_57362457_57362510	1.01004	ACAGUAU	ENSMUST00000079833.6|Hsf2|ENSMUSG00000019878.9|heat shock factor 2
mm39_v1_chr6_+_17463748_17463808	1.00608	ACAGUAU	ENSMUST00000115443.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr5_+_73648368_73648452	1.00378	ACAGUAU	ENSMUST00000113558.8|Dcun1d4|ENSMUSG00000051674.16|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	ENSMUST00000063882.12|Dcun1d4|ENSMUSG00000051674.16|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm39_v1_chr16_-_11072131_11072167	1.00275	ACAGUAU	ENSMUST00000167571.8|Gspt1|ENSMUSG00000062203.16|G1 to S phase transition 1
mm39_v1_chr9_-_94420128_94420142	0.973567	ACAGUAU	ENSMUST00000113028.2|Dipk2a|ENSMUSG00000045414.8|divergent protein kinase domain 2A
mm39_v1_chr17_-_63188139_63188352	0.970415	ACAGUAU	ENSMUST00000078839.5|Efna5|ENSMUSG00000048915.13|ephrin A5	ENSMUST00000076840.12|Efna5|ENSMUSG00000048915.13|ephrin A5
mm39_v1_chrX_+_104807868_104807885	0.955765	ACAGUAU	ENSMUST00000033581.4|Fgf16|ENSMUSG00000031230.4|fibroblast growth factor 16
mm39_v1_chr16_-_46317318_46317349	0.952504	ACAGUAU	ENSMUST00000023335.13|Nectin3|ENSMUSG00000022656.16|nectin cell adhesion molecule 3	ENSMUST00000023334.15|Nectin3|ENSMUSG00000022656.16|nectin cell adhesion molecule 3
mm39_v1_chr1_-_30988772_30988860	0.947138	ACAGUAU	ENSMUST00000238874.2|Ptp4a1|ENSMUSG00000117310.3|protein tyrosine phosphatase 4a1	ENSMUST00000027232.15|Ptp4a1|ENSMUSG00000117310.3|protein tyrosine phosphatase 4a1	ENSMUST00000076587.6|Ptp4a1|ENSMUSG00000117310.3|protein tyrosine phosphatase 4a1	ENSMUST00000233506.2|Ptp4a1|ENSMUSG00000117310.3|protein tyrosine phosphatase 4a1
mm39_v1_chr5_+_143608194_143608215	0.941778	ACAGUAU	ENSMUST00000116456.10|Cyth3|ENSMUSG00000018001.19|cytohesin 3
mm39_v1_chr15_+_5173342_5173379	0.922272	ACAGUAU	ENSMUST00000051186.9|Prkaa1|ENSMUSG00000050697.10|protein kinase, AMP-activated, alpha 1 catalytic subunit	ENSMUST00000228218.2|Prkaa1|ENSMUSG00000050697.10|protein kinase, AMP-activated, alpha 1 catalytic subunit
mm39_v1_chr18_+_5591864_5591902	0.916692	ACAGUAU	ENSMUST00000025081.13|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1	ENSMUST00000159390.8|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1
mm39_v1_chr17_+_13980764_13980936	0.910987	ACAGUAU	ENSMUST00000139347.8|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor	ENSMUST00000156591.8|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor	ENSMUST00000170827.9|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor	ENSMUST00000139666.8|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor	ENSMUST00000137708.8|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor	ENSMUST00000137784.8|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor	ENSMUST00000150848.8|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor
mm39_v1_chr13_-_104246084_104246149	0.908007	ACAGUAU	ENSMUST00000224945.2|Nln|ENSMUSG00000021710.12|neurolysin (metallopeptidase M3 family)	ENSMUST00000109315.5|Nln|ENSMUSG00000021710.12|neurolysin (metallopeptidase M3 family)
mm39_v1_chr18_-_46658957_46659078	0.905332	ACAGUAU	ENSMUST00000036226.6|Fem1c|ENSMUSG00000033319.6|fem 1 homolog c
mm39_v1_chr5_-_121974913_121974927	0.898589	ACAGUAU	ENSMUST00000040308.14|Sh2b3|ENSMUSG00000042594.17|SH2B adaptor protein 3	ENSMUST00000086310.8|Sh2b3|ENSMUSG00000042594.17|SH2B adaptor protein 3
mm39_v1_chr10_-_58511476_58511534	0.898575	ACAGUAU	ENSMUST00000003312.5|Edar|ENSMUSG00000003227.5|ectodysplasin-A receptor
mm39_v1_chr4_+_11156411_11156453	0.898403	ACAGUAU	ENSMUST00000029865.4|Trp53inp1|ENSMUSG00000028211.12|transformation related protein 53 inducible nuclear protein 1
mm39_v1_chr5_-_143717970_143718072	0.897949	ACAGUAU	ENSMUST00000053287.6|Usp42|ENSMUSG00000051306.8|ubiquitin specific peptidase 42
mm39_v1_chr13_+_9326513_9326657	0.897649	ACAGUAU	ENSMUST00000174552.8|Dip2c|ENSMUSG00000048264.17|disco interacting protein 2 homolog C
mm39_v1_chr2_-_34262012_34262056	0.897134	ACAGUAU	ENSMUST00000113132.9|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3	ENSMUST00000040638.15|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3
mm39_v1_chr11_-_88609048_88609136	0.896453	ACAGUAU	ENSMUST00000107909.8|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr10_-_117681864_117681940	0.879396	ACAGUAU	ENSMUST00000064667.9|Rap1b|ENSMUSG00000052681.9|RAS related protein 1b
mm39_v1_chr11_+_72498029_72498133	0.87593	ACAGUAU	ENSMUST00000021148.13|Ube2g1|ENSMUSG00000020794.14|ubiquitin-conjugating enzyme E2G 1	ENSMUST00000138247.8|Ube2g1|ENSMUSG00000020794.14|ubiquitin-conjugating enzyme E2G 1
mm39_v1_chr9_-_114393406_114393437	0.87161	ACAGUAU	ENSMUST00000111816.3|Trim71|ENSMUSG00000079259.3|tripartite motif-containing 71
mm39_v1_chr6_-_148847854_148847995	0.869937	ACAGUAU	ENSMUST00000139355.8|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000146457.2|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000054080.15|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor
mm39_v1_chr13_+_24985640_24985640	0.869262	ACAGUAU	ENSMUST00000019276.12|BC005537|ENSMUSG00000019132.12|cDNA sequence BC005537
mm39_v1_chr2_-_156921135_156921196	0.850538	ACAGUAU	ENSMUST00000069098.7|Soga1|ENSMUSG00000055485.7|suppressor of glucose, autophagy associated 1
mm39_v1_chr12_+_65012564_65012714	0.837618	ACAGUAU	ENSMUST00000066296.9|Togaram1|ENSMUSG00000035614.12|TOG array regulator of axonemal microtubules 1	ENSMUST00000223166.2|Togaram1|ENSMUSG00000035614.12|TOG array regulator of axonemal microtubules 1
mm39_v1_chr7_-_70010341_70010494	0.835254	ACAGUAU	ENSMUST00000032768.15|Nr2f2|ENSMUSG00000030551.15|nuclear receptor subfamily 2, group F, member 2
mm39_v1_chr7_+_111622675_111622775	0.829882	ACAGUAU	ENSMUST00000106653.4|Usp47|ENSMUSG00000059263.10|ubiquitin specific peptidase 47	ENSMUST00000215510.2|Usp47|ENSMUSG00000059263.10|ubiquitin specific peptidase 47	ENSMUST00000210309.2|Usp47|ENSMUSG00000059263.10|ubiquitin specific peptidase 47
mm39_v1_chr13_-_114595475_114595493	0.825889	ACAGUAU	ENSMUST00000022287.8|Fst|ENSMUSG00000021765.10|follistatin	ENSMUST00000223640.3|Fst|ENSMUSG00000021765.10|follistatin
mm39_v1_chr14_+_4230569_4230642	0.816211	ACAGUAU	ENSMUST00000090543.6|Nr1d2|ENSMUSG00000021775.12|nuclear receptor subfamily 1, group D, member 2
mm39_v1_chr13_-_38819012_38819096	0.803536	ACAGUAU	ENSMUST00000224902.2|Bloc1s5|ENSMUSG00000038982.11|biogenesis of lysosomal organelles complex-1, subunit 5, muted	ENSMUST00000224115.2|Bloc1s5|ENSMUSG00000038982.11|biogenesis of lysosomal organelles complex-1, subunit 5, muted	ENSMUST00000035899.8|Bloc1s5|ENSMUSG00000038982.11|biogenesis of lysosomal organelles complex-1, subunit 5, muted
mm39_v1_chr4_+_65042411_65042411	0.793141	ACAGUAU	ENSMUST00000084501.4|Pappa|ENSMUSG00000028370.8|pregnancy-associated plasma protein A
mm39_v1_chr11_+_53241561_53241660	0.780055	ACAGUAU	ENSMUST00000060945.12|Aff4|ENSMUSG00000049470.14|AF4/FMR2 family, member 4
mm39_v1_chr5_+_146168020_146168195	0.776282	ACAGUAU	ENSMUST00000161181.8|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000161652.8|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000031640.15|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000159467.2|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8
mm39_v1_chr14_+_63075127_63075203	0.771509	ACAGUAU	ENSMUST00000014691.10|Wdfy2|ENSMUSG00000014547.11|WD repeat and FYVE domain containing 2
mm39_v1_chr7_-_81104423_81104512	0.766512	ACAGUAU	ENSMUST00000178892.3|Cpeb1|ENSMUSG00000025586.18|cytoplasmic polyadenylation element binding protein 1	ENSMUST00000098331.10|Cpeb1|ENSMUSG00000025586.18|cytoplasmic polyadenylation element binding protein 1
mm39_v1_chr11_+_44508137_44508169	0.764799	ACAGUAU	ENSMUST00000109268.2|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000101326.10|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000081265.12|Ebf1|ENSMUSG00000057098.15|early B cell factor 1
mm39_v1_chr8_+_107877252_107877322	0.757336	ACAGUAU	ENSMUST00000034400.5|Cyb5b|ENSMUSG00000031924.5|cytochrome b5 type B
mm39_v1_chr5_+_103573367_103573367	0.754113	ACAGUAU	ENSMUST00000048957.11|Ptpn13|ENSMUSG00000034573.15|protein tyrosine phosphatase, non-receptor type 13
mm39_v1_chr4_+_47353217_47353226	0.7458	ACAGUAU	ENSMUST00000007757.15|Tgfbr1|ENSMUSG00000007613.16|transforming growth factor, beta receptor I
mm39_v1_chr12_-_75642969_75643036	0.745137	ACAGUAU	ENSMUST00000021447.9|Ppp2r5e|ENSMUSG00000021051.11|protein phosphatase 2, regulatory subunit B', epsilon	ENSMUST00000220035.2|Ppp2r5e|ENSMUSG00000021051.11|protein phosphatase 2, regulatory subunit B', epsilon
mm39_v1_chr14_+_69266566_69266687	0.731566	ACAGUAU	ENSMUST00000014957.10|Stc1|ENSMUSG00000014813.10|stanniocalcin 1
mm39_v1_chr18_+_62086122_62086192	0.708029	ACAGUAU	ENSMUST00000051720.6|Sh3tc2|ENSMUSG00000045629.9|SH3 domain and tetratricopeptide repeats 2	ENSMUST00000235860.2|Sh3tc2|ENSMUSG00000045629.9|SH3 domain and tetratricopeptide repeats 2
mm39_v1_chr17_+_30224003_30224074	0.706598	ACAGUAU	ENSMUST00000057897.10|Zfand3|ENSMUSG00000044477.13|zinc finger, AN1-type domain 3
mm39_v1_chr3_+_52175757_52175827	0.704396	ACAGUAU	ENSMUST00000053764.7|Foxo1|ENSMUSG00000044167.7|forkhead box O1
mm39_v1_chr12_-_75782502_75782511	0.703005	ACAGUAU	ENSMUST00000021450.6|Sgpp1|ENSMUSG00000021054.7|sphingosine-1-phosphate phosphatase 1
mm39_v1_chr11_+_95304903_95305069	0.699187	ACAGUAU	ENSMUST00000107724.9|Spop|ENSMUSG00000057522.16|speckle-type BTB/POZ protein	ENSMUST00000150884.8|Spop|ENSMUSG00000057522.16|speckle-type BTB/POZ protein	ENSMUST00000107722.8|Spop|ENSMUSG00000057522.16|speckle-type BTB/POZ protein	ENSMUST00000127713.2|Spop|ENSMUSG00000057522.16|speckle-type BTB/POZ protein
mm39_v1_chr9_-_106666329_106666408	0.699057	ACAGUAU	ENSMUST00000046502.7|Rad54l2|ENSMUSG00000040661.7|RAD54 like 2 (S. cerevisiae)
mm39_v1_chr5_-_98178811_98178821	0.689479	ACAGUAU	ENSMUST00000031281.14|Antxr2|ENSMUSG00000029338.14|anthrax toxin receptor 2
mm39_v1_chr13_-_63713549_63713549	0.689122	ACAGUAU	ENSMUST00000021921.11|Ptch1|ENSMUSG00000021466.13|patched 1
mm39_v1_chr6_-_148732946_148732992	0.660681	ACAGUAU	ENSMUST00000048418.14|Ipo8|ENSMUSG00000040029.16|importin 8
mm39_v1_chr10_+_41395410_41395443	0.659665	ACAGUAU	ENSMUST00000019962.15|Cd164|ENSMUSG00000019818.16|CD164 antigen
mm39_v1_chr13_-_54835508_54835623	0.650241	ACAGUAU	ENSMUST00000177950.8|Rnf44|ENSMUSG00000034928.17|ring finger protein 44	ENSMUST00000146931.8|Rnf44|ENSMUSG00000034928.17|ring finger protein 44
mm39_v1_chr1_-_136888118_136888234	0.647071	ACAGUAU	ENSMUST00000192357.6|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2	ENSMUST00000027649.14|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2
mm39_v1_chr13_-_64422693_64422761	0.645738	ACAGUAU	ENSMUST00000109770.2|Cdc14b|ENSMUSG00000033102.16|CDC14 cell division cycle 14B
mm39_v1_chr3_+_88857929_88857975	0.642584	ACAGUAU	ENSMUST00000186583.7|Ash1l|ENSMUSG00000028053.14|ASH1 like histone lysine methyltransferase
mm39_v1_chr19_+_32734884_32734900	0.629954	ACAGUAU	ENSMUST00000013807.8|Pten|ENSMUSG00000013663.8|phosphatase and tensin homolog
mm39_v1_chr18_-_4352944_4353015	0.621965	ACAGUAU	ENSMUST00000025078.10|Map3k8|ENSMUSG00000024235.12|mitogen-activated protein kinase kinase kinase 8
mm39_v1_chr17_-_26727437_26727493	0.61928	ACAGUAU	ENSMUST00000236661.2|Dusp1|ENSMUSG00000024190.8|dual specificity phosphatase 1	ENSMUST00000025025.7|Dusp1|ENSMUSG00000024190.8|dual specificity phosphatase 1
mm39_v1_chr14_+_21549798_21549853	0.613515	ACAGUAU	ENSMUST00000182855.8|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B	ENSMUST00000182405.9|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B	ENSMUST00000069648.14|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B
mm39_v1_chr7_-_44024429_44024459	0.61216	ACAGUAU	ENSMUST00000107933.8|1700008O03Rik|ENSMUSG00000008028.16|RIKEN cDNA 1700008O03 gene
mm39_v1_chr1_-_82269137_82269137	0.610165	ACAGUAU	ENSMUST00000069799.3|Irs1|ENSMUSG00000055980.3|insulin receptor substrate 1
mm39_v1_chr10_-_90959853_90959921	0.594805	ACAGUAU	ENSMUST00000170810.8|Slc25a3|ENSMUSG00000061904.13|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	ENSMUST00000076694.13|Slc25a3|ENSMUSG00000061904.13|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm39_v1_chr7_-_79765042_79765140	0.580889	ACAGUAU	ENSMUST00000206714.2|Idh2|ENSMUSG00000030541.17|isocitrate dehydrogenase 2 (NADP+), mitochondrial	ENSMUST00000107384.10|Idh2|ENSMUSG00000030541.17|isocitrate dehydrogenase 2 (NADP+), mitochondrial
mm39_v1_chr15_+_80595486_80595541	0.578713	ACAGUAU	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr9_+_114560235_114560308	0.577049	ACAGUAU	ENSMUST00000035007.10|Cmtm6|ENSMUSG00000032434.10|CKLF-like MARVEL transmembrane domain containing 6
mm39_v1_chr7_-_144107401_144107533	0.575582	ACAGUAU	ENSMUST00000168134.10|Ppfia1|ENSMUSG00000037519.18|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
mm39_v1_chr18_+_35962832_35962849	0.574728	ACAGUAU	ENSMUST00000060722.8|Cxxc5|ENSMUSG00000046668.10|CXXC finger 5
mm39_v1_chr3_-_132655954_132656052	0.574094	ACAGUAU	ENSMUST00000042744.16|Npnt|ENSMUSG00000040998.19|nephronectin	ENSMUST00000117811.8|Npnt|ENSMUSG00000040998.19|nephronectin
mm39_v1_chr6_+_38410848_38410901	0.568623	ACAGUAU	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr13_+_38010203_38010291	0.566826	ACAGUAU	ENSMUST00000128570.9|Rreb1|ENSMUSG00000039087.18|ras responsive element binding protein 1
mm39_v1_chr14_+_5894220_5894254	0.564729	ACAGUAU	ENSMUST00000063750.8|Rarb|ENSMUSG00000017491.10|retinoic acid receptor, beta
mm39_v1_chr4_+_54947976_54948054	0.560943	ACAGUAU	ENSMUST00000098070.10|Zfp462|ENSMUSG00000060206.12|zinc finger protein 462
mm39_v1_chr13_-_43634695_43634823	0.557844	ACAGUAU	ENSMUST00000144326.4|Ranbp9|ENSMUSG00000038546.10|RAN binding protein 9
mm39_v1_chr13_-_85437118_85437178	0.55579	ACAGUAU	ENSMUST00000109552.3|Rasa1|ENSMUSG00000021549.15|RAS p21 protein activator 1
mm39_v1_chr10_+_34265969_34265985	0.5472	ACAGUAU	ENSMUST00000105511.2|Col10a1|ENSMUSG00000039462.5|collagen, type X, alpha 1
mm39_v1_chr18_+_75953244_75953308	0.544471	ACAGUAU	ENSMUST00000058997.15|Zbtb7c|ENSMUSG00000044646.16|zinc finger and BTB domain containing 7C
mm39_v1_chr14_-_72947422_72947467	0.543007	ACAGUAU	ENSMUST00000089017.12|Fndc3a|ENSMUSG00000033487.15|fibronectin type III domain containing 3A
mm39_v1_chrX_-_37653396_37653432	0.537733	ACAGUAU	ENSMUST00000016681.15|Cul4b|ENSMUSG00000031095.16|cullin 4B
mm39_v1_chr17_+_28128307_28128532	0.531672	ACAGUAU	ENSMUST00000233525.2|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1	ENSMUST00000025058.15|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1	ENSMUST00000233866.2|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1
mm39_v1_chr19_-_47452840_47452894	0.526861	ACAGUAU	ENSMUST00000081619.10|Sh3pxd2a|ENSMUSG00000053617.13|SH3 and PX domains 2A
mm39_v1_chr1_+_191058109_191058181	0.52528	ACAGUAU	ENSMUST00000027940.6|Pacc1|ENSMUSG00000026627.8|proton activated chloride channel 1
mm39_v1_chr1_-_59276252_59276416	0.522079	ACAGUAU	ENSMUST00000163058.2|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor	ENSMUST00000160945.2|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor	ENSMUST00000027178.13|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor
mm39_v1_chr3_-_97134680_97134738	0.52107	ACAGUAU	ENSMUST00000046521.14|Bcl9|ENSMUSG00000038256.16|B cell CLL/lymphoma 9
mm39_v1_chr19_-_37184692_37184907	0.520114	ACAGUAU	ENSMUST00000132580.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000079754.11|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000136286.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000126188.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000126781.2|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3
mm39_v1_chr2_+_148522943_148523070	0.519639	ACAGUAU	ENSMUST00000028928.8|Gzf1|ENSMUSG00000027439.10|GDNF-inducible zinc finger protein 1
mm39_v1_chr2_+_69727563_69727591	0.519487	ACAGUAU	ENSMUST00000055758.16|Ubr3|ENSMUSG00000044308.18|ubiquitin protein ligase E3 component n-recognin 3	ENSMUST00000112251.9|Ubr3|ENSMUSG00000044308.18|ubiquitin protein ligase E3 component n-recognin 3
mm39_v1_chr11_-_66416790_66416790	0.516229	ACAGUAU	ENSMUST00000066679.7|Shisa6|ENSMUSG00000053930.14|shisa family member 6
mm39_v1_chr3_+_32583602_32583676	0.500001	ACAGUAU	ENSMUST00000091257.11|Mfn1|ENSMUSG00000027668.14|mitofusin 1
mm39_v1_chr3_+_31956814_31956852	0.498173	ACAGUAU	ENSMUST00000192429.6|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000191869.6|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000178668.2|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000119970.8|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm39_v1_chr10_+_39608094_39608137	0.491735	ACAGUAU	ENSMUST00000019986.13|Rev3l|ENSMUSG00000019841.16|REV3 like, DNA directed polymerase zeta catalytic subunit
mm39_v1_chr2_+_59442378_59442453	0.486413	ACAGUAU	ENSMUST00000112568.8|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	ENSMUST00000037526.11|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm39_v1_chr7_-_110682204_110682244	0.486028	ACAGUAU	ENSMUST00000161051.8|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2	ENSMUST00000160132.8|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2	ENSMUST00000162415.9|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2
mm39_v1_chr12_-_73160181_73160230	0.480886	ACAGUAU	ENSMUST00000043208.8|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4	ENSMUST00000175693.3|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4
mm39_v1_chr2_+_155223728_155223804	0.473874	ACAGUAU	ENSMUST00000043237.14|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2	ENSMUST00000174685.8|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2
mm39_v1_chr5_-_136596299_136596390	0.472667	ACAGUAU	ENSMUST00000004097.16|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr15_-_73056713_73056822	0.470882	ACAGUAU	ENSMUST00000044113.12|Ago2|ENSMUSG00000036698.12|argonaute RISC catalytic subunit 2
mm39_v1_chr7_-_83801073_83801152	0.46691	ACAGUAU	ENSMUST00000117085.2|Abhd17c|ENSMUSG00000038459.11|abhydrolase domain containing 17C
mm39_v1_chr3_+_135144202_135144241	0.462994	ACAGUAU	ENSMUST00000166033.6|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3
mm39_v1_chr13_-_46118433_46118477	0.457932	ACAGUAU	ENSMUST00000167708.4|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000091628.11|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000180110.9|Atxn1|ENSMUSG00000046876.17|ataxin 1
mm39_v1_chrX_+_99019176_99019387	0.452087	ACAGUAU	ENSMUST00000113781.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000113783.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000113779.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000113776.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000113775.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000113780.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000113778.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000113777.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000071453.3|Eda|ENSMUSG00000059327.10|ectodysplasin-A
mm39_v1_chr12_-_12991828_12991915	0.449333	ACAGUAU	ENSMUST00000043396.15|Mycn|ENSMUSG00000037169.16|v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived
mm39_v1_chr9_+_72569628_72569697	0.446194	ACAGUAU	ENSMUST00000034740.15|Nedd4|ENSMUSG00000032216.16|neural precursor cell expressed, developmentally down-regulated 4
mm39_v1_chr7_-_134539993_134540159	0.441542	ACAGUAU	ENSMUST00000171394.3|Insyn2a|ENSMUSG00000073805.6|inhibitory synaptic factor 2A
mm39_v1_chr6_-_138020409_138020479	0.437994	ACAGUAU	ENSMUST00000111873.8|Slc15a5|ENSMUSG00000044378.13|solute carrier family 15, member 5	ENSMUST00000141280.3|Slc15a5|ENSMUSG00000044378.13|solute carrier family 15, member 5
mm39_v1_chr7_-_67022520_67022609	0.436576	ACAGUAU	ENSMUST00000156690.8|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000107476.8|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000076325.12|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000032776.15|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000133074.2|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A
mm39_v1_chr11_-_118977047_118977075	0.428556	ACAGUAU	ENSMUST00000026665.8|Cbx4|ENSMUSG00000039989.8|chromobox 4
mm39_v1_chr3_-_108053396_108053475	0.425358	ACAGUAU	ENSMUST00000000001.5|Gnai3|ENSMUSG00000000001.5|guanine nucleotide binding protein (G protein), alpha inhibiting 3
mm39_v1_chr6_+_21949570_21949684	0.416918	ACAGUAU	ENSMUST00000031680.10|Ing3|ENSMUSG00000029670.13|inhibitor of growth family, member 3	ENSMUST00000115389.8|Ing3|ENSMUSG00000029670.13|inhibitor of growth family, member 3	ENSMUST00000151473.8|Ing3|ENSMUSG00000029670.13|inhibitor of growth family, member 3
mm39_v1_chr4_+_139302009_139302036	0.416653	ACAGUAU	ENSMUST00000174078.2|Iffo2|ENSMUSG00000041025.16|intermediate filament family orphan 2
mm39_v1_chr4_-_129566505_129566567	0.416327	ACAGUAU	ENSMUST00000102590.11|Kpna6|ENSMUSG00000003731.14|karyopherin (importin) alpha 6
mm39_v1_chr8_-_110464345_110464418	0.407154	ACAGUAU	ENSMUST00000212605.2|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like	ENSMUST00000093162.4|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like	ENSMUST00000212726.2|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like
mm39_v1_chr3_-_49711765_49711772	0.406481	ACAGUAU	ENSMUST00000035931.13|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr4_+_62883796_62883854	0.405923	ACAGUAU	ENSMUST00000030043.13|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000107415.8|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000064814.6|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618
mm39_v1_chr11_+_105480796_105480857	0.404652	ACAGUAU	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr13_-_93636224_93636333	0.404635	ACAGUAU	ENSMUST00000220513.2|Jmy|ENSMUSG00000021690.11|junction-mediating and regulatory protein	ENSMUST00000065537.9|Jmy|ENSMUSG00000021690.11|junction-mediating and regulatory protein
mm39_v1_chr4_-_126323291_126323349	0.404342	ACAGUAU	ENSMUST00000069097.13|Ago3|ENSMUSG00000028842.16|argonaute RISC catalytic subunit 3
mm39_v1_chr4_-_70453140_70453224	0.398354	ACAGUAU	ENSMUST00000107359.9|Megf9|ENSMUSG00000039270.10|multiple EGF-like-domains 9
mm39_v1_chr12_-_51738666_51738738	0.397549	ACAGUAU	ENSMUST00000013130.15|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3	ENSMUST00000169503.4|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3
mm39_v1_chr16_+_58228806_58228886	0.391446	ACAGUAU	ENSMUST00000046663.8|Dcbld2|ENSMUSG00000035107.14|discoidin, CUB and LCCL domain containing 2
mm39_v1_chr16_+_70110837_70110863	0.391398	ACAGUAU	ENSMUST00000163832.8|Gbe1|ENSMUSG00000022707.17|glucan (1,4-alpha-), branching enzyme 1
mm39_v1_chr17_+_29709723_29709742	0.386193	ACAGUAU	ENSMUST00000024811.9|Pim1|ENSMUSG00000024014.9|proviral integration site 1
mm39_v1_chr5_+_20112500_20112549	0.384761	ACAGUAU	ENSMUST00000101558.10|Magi2|ENSMUSG00000040003.19|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm39_v1_chr5_+_64960705_64960731	0.384478	ACAGUAU	ENSMUST00000165536.8|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr6_-_52211882_52211940	0.383046	ACAGUAU	ENSMUST00000125581.2|Hoxa10|ENSMUSG00000000938.12|homeobox A10
mm39_v1_chr7_+_48896560_48896592	0.382306	ACAGUAU	ENSMUST00000184945.8|Nav2|ENSMUSG00000052512.18|neuron navigator 2
mm39_v1_chr14_-_8457069_8457272	0.375248	ACAGUAU	ENSMUST00000022257.4|Atxn7|ENSMUSG00000021738.6|ataxin 7
mm39_v1_chr11_-_5331734_5331745	0.37417	ACAGUAU	ENSMUST00000172492.8|Znrf3|ENSMUSG00000041961.15|zinc and ring finger 3
mm39_v1_chr14_+_33645539_33645560	0.370943	ACAGUAU	ENSMUST00000168727.3|Gdf10|ENSMUSG00000021943.8|growth differentiation factor 10
mm39_v1_chr4_-_128699838_128699966	0.369106	ACAGUAU	ENSMUST00000106072.9|Zfp362|ENSMUSG00000028799.16|zinc finger protein 362	ENSMUST00000170934.3|Zfp362|ENSMUSG00000028799.16|zinc finger protein 362
mm39_v1_chr5_+_107977965_107978041	0.368138	ACAGUAU	ENSMUST00000072578.8|Ube2d2b|ENSMUSG00000063447.8|ubiquitin-conjugating enzyme E2D 2B
mm39_v1_chr9_+_56902172_56902207	0.366509	ACAGUAU	ENSMUST00000034832.8|Ptpn9|ENSMUSG00000032290.8|protein tyrosine phosphatase, non-receptor type 9
mm39_v1_chr6_-_4086914_4086972	0.366483	ACAGUAU	ENSMUST00000049166.5|Bet1|ENSMUSG00000032757.7|Bet1 golgi vesicular membrane trafficking protein
mm39_v1_chr5_+_114706077_114706077	0.364626	ACAGUAU	ENSMUST00000043650.8|Fam222a|ENSMUSG00000041930.8|family with sequence similarity 222, member A
mm39_v1_chr6_-_28261881_28261942	0.364152	ACAGUAU	ENSMUST00000115320.8|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000123098.8|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000115321.9|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000155494.2|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800
mm39_v1_chr12_-_91815855_91815931	0.364132	ACAGUAU	ENSMUST00000167466.2|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)	ENSMUST00000021347.12|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)	ENSMUST00000178462.8|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)
mm39_v1_chr11_-_84416340_84416369	0.363007	ACAGUAU	ENSMUST00000018842.14|Lhx1|ENSMUSG00000018698.16|LIM homeobox protein 1
mm39_v1_chr2_+_22958179_22958253	0.36156	ACAGUAU	ENSMUST00000227663.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000028121.15|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000227809.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000144088.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5
mm39_v1_chr14_+_73790105_73790251	0.359412	ACAGUAU	ENSMUST00000160507.8|Sucla2|ENSMUSG00000022110.14|succinate-Coenzyme A ligase, ADP-forming, beta subunit	ENSMUST00000022706.7|Sucla2|ENSMUSG00000022110.14|succinate-Coenzyme A ligase, ADP-forming, beta subunit
mm39_v1_chr8_+_95113066_95113135	0.353534	ACAGUAU	ENSMUST00000161576.8|Herpud1|ENSMUSG00000031770.17|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	ENSMUST00000034220.8|Herpud1|ENSMUSG00000031770.17|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
mm39_v1_chr10_+_56253418_56253434	0.347574	ACAGUAU	ENSMUST00000068581.9|Gja1|ENSMUSG00000050953.11|gap junction protein, alpha 1	ENSMUST00000217789.2|Gja1|ENSMUSG00000050953.11|gap junction protein, alpha 1
mm39_v1_chr4_-_151946219_151946333	0.346585	ACAGUAU	ENSMUST00000097774.9|Camta1|ENSMUSG00000014592.22|calmodulin binding transcription activator 1
mm39_v1_chr14_-_67309866_67309925	0.334529	ACAGUAU	ENSMUST00000225380.2|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha	ENSMUST00000089230.7|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha
mm39_v1_chr10_-_30718760_30718797	0.32984	ACAGUAU	ENSMUST00000019924.9|Hey2|ENSMUSG00000019789.10|hairy/enhancer-of-split related with YRPW motif 2
mm39_v1_chr17_-_84495364_84495381	0.32647	ACAGUAU	ENSMUST00000060366.7|Zfp36l2|ENSMUSG00000045817.9|zinc finger protein 36, C3H type-like 2
mm39_v1_chr15_+_66449385_66449487	0.326289	ACAGUAU	ENSMUST00000230882.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000048188.10|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000230948.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000229160.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1
mm39_v1_chr2_+_160487801_160487816	0.323655	ACAGUAU	ENSMUST00000109468.3|Top1|ENSMUSG00000070544.7|topoisomerase (DNA) I
mm39_v1_chr8_-_123278054_123278071	0.323017	ACAGUAU	ENSMUST00000156333.9|Piezo1|ENSMUSG00000014444.18|piezo-type mechanosensitive ion channel component 1	ENSMUST00000067252.14|Piezo1|ENSMUSG00000014444.18|piezo-type mechanosensitive ion channel component 1
mm39_v1_chr1_-_138547403_138547497	0.318758	ACAGUAU	ENSMUST00000027642.5|Nek7|ENSMUSG00000026393.11|NIMA (never in mitosis gene a)-related expressed kinase 7	ENSMUST00000186017.7|Nek7|ENSMUSG00000026393.11|NIMA (never in mitosis gene a)-related expressed kinase 7
mm39_v1_chr16_+_8647959_8647966	0.316836	ACAGUAU	ENSMUST00000023150.7|1810013L24Rik|ENSMUSG00000022507.7|RIKEN cDNA 1810013L24 gene
mm39_v1_chr4_-_149184259_149184333	0.314248	ACAGUAU	ENSMUST00000103217.11|Pex14|ENSMUSG00000028975.17|peroxisomal biogenesis factor 14
mm39_v1_chr5_+_76736514_76736570	0.314247	ACAGUAU	ENSMUST00000121979.8|Cep135|ENSMUSG00000036403.16|centrosomal protein 135
mm39_v1_chr1_-_78173744_78173771	0.313647	ACAGUAU	ENSMUST00000087086.7|Pax3|ENSMUSG00000004872.16|paired box 3
mm39_v1_chr10_+_43354807_43354859	0.306971	ACAGUAU	ENSMUST00000167488.9|Bend3|ENSMUSG00000038214.16|BEN domain containing 3
mm39_v1_chr13_-_103470937_103471007	0.305908	ACAGUAU	ENSMUST00000167058.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4	ENSMUST00000164111.2|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr16_-_10131804_10131832	0.305703	ACAGUAU	ENSMUST00000078357.5|Emp2|ENSMUSG00000022505.10|epithelial membrane protein 2
mm39_v1_chr5_-_21260878_21260960	0.303986	ACAGUAU	ENSMUST00000030556.8|Ptpn12|ENSMUSG00000028771.14|protein tyrosine phosphatase, non-receptor type 12
mm39_v1_chr8_-_89770790_89770823	0.299614	ACAGUAU	ENSMUST00000034090.8|Sall1|ENSMUSG00000031665.8|spalt like transcription factor 1
mm39_v1_chr19_-_29783389_29783389	0.294225	ACAGUAU	ENSMUST00000177155.8|9930021J03Rik|ENSMUSG00000046138.16|RIKEN cDNA 9930021J03 gene
mm39_v1_chr16_-_97763780_97763836	0.29421	ACAGUAU	ENSMUST00000232187.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000232165.2|C2cd2|ENSMUSG00000045975.9|C2 calcium-dependent domain containing 2	ENSMUST00000231263.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000052089.9|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000063605.15|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000113734.9|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000231560.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21
mm39_v1_chrX_+_98086187_98086220	0.290335	ACAGUAU	ENSMUST00000036606.14|Stard8|ENSMUSG00000031216.14|START domain containing 8
mm39_v1_chr5_+_115567644_115567673	0.286722	ACAGUAU	ENSMUST00000150779.8|Msi1|ENSMUSG00000054256.12|musashi RNA-binding protein 1
mm39_v1_chr2_+_79465696_79465729	0.284227	ACAGUAU	ENSMUST00000111785.9|Itprid2|ENSMUSG00000027007.17|ITPR interacting domain containing 2
mm39_v1_chr4_+_116734573_116734651	0.282081	ACAGUAU	ENSMUST00000044823.4|Zswim5|ENSMUSG00000033948.4|zinc finger SWIM-type containing 5
mm39_v1_chr17_-_32074754_32074780	0.282037	ACAGUAU	ENSMUST00000024839.6|Sik1|ENSMUSG00000024042.8|salt inducible kinase 1
mm39_v1_chr19_+_21630887_21630899	0.281366	ACAGUAU	ENSMUST00000052556.5|Abhd17b|ENSMUSG00000047368.5|abhydrolase domain containing 17B
mm39_v1_chr1_+_105918383_105918450	0.278718	ACAGUAU	ENSMUST00000119166.8|Zcchc2|ENSMUSG00000038866.16|zinc finger, CCHC domain containing 2
mm39_v1_chr7_+_36397426_36397543	0.278097	ACAGUAU	ENSMUST00000021641.8|Tshz3|ENSMUSG00000021217.8|teashirt zinc finger family member 3
mm39_v1_chr4_+_57434247_57434369	0.271163	ACAGUAU	ENSMUST00000102905.8|Pakap|ENSMUSG00000090053.10|paralemmin A kinase anchor protein
mm39_v1_chr2_+_112285342_112285408	0.269979	ACAGUAU	ENSMUST00000069747.6|Emc7|ENSMUSG00000055943.6|ER membrane protein complex subunit 7
mm39_v1_chr13_+_84370405_84370483	0.266397	ACAGUAU	ENSMUST00000057495.10|Tmem161b|ENSMUSG00000035762.12|transmembrane protein 161B	ENSMUST00000225069.2|Tmem161b|ENSMUSG00000035762.12|transmembrane protein 161B
mm39_v1_chr3_+_16237371_16237447	0.262689	ACAGUAU	ENSMUST00000108345.9|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000191774.6|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000108346.5|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3
mm39_v1_chr13_-_45155616_45155627	0.261465	ACAGUAU	ENSMUST00000072329.15|Dtnbp1|ENSMUSG00000057531.15|dystrobrevin binding protein 1
mm39_v1_chr9_+_35122451_35122520	0.259114	ACAGUAU	ENSMUST00000034541.12|Srpr|ENSMUSG00000032042.12|signal recognition particle receptor ('docking protein')
mm39_v1_chr8_+_88925821_88925852	0.25542	ACAGUAU	ENSMUST00000066748.10|Tent4b|ENSMUSG00000036779.13|terminal nucleotidyltransferase 4B	ENSMUST00000119033.8|Tent4b|ENSMUSG00000036779.13|terminal nucleotidyltransferase 4B	ENSMUST00000118952.8|Tent4b|ENSMUSG00000036779.13|terminal nucleotidyltransferase 4B
mm39_v1_chr9_+_59658156_59658205	0.252615	ACAGUAU	ENSMUST00000136740.8|Myo9a|ENSMUSG00000039585.16|myosin IXa	ENSMUST00000135298.8|Myo9a|ENSMUSG00000039585.16|myosin IXa	ENSMUST00000128341.2|Myo9a|ENSMUSG00000039585.16|myosin IXa
mm39_v1_chr15_+_96185399_96185487	0.252563	ACAGUAU	ENSMUST00000134985.9|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)	ENSMUST00000096250.5|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)
mm39_v1_chr2_+_124452493_124452534	0.250365	ACAGUAU	ENSMUST00000103239.10|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	ENSMUST00000103240.9|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm39_v1_chr5_-_21087023_21087122	0.249569	ACAGUAU	ENSMUST00000118174.8|Phtf2|ENSMUSG00000039987.16|putative homeodomain transcription factor 2
mm39_v1_chr4_-_99717359_99717428	0.248339	ACAGUAU	ENSMUST00000146258.2|Itgb3bp|ENSMUSG00000028549.18|integrin beta 3 binding protein (beta3-endonexin)
mm39_v1_chr9_-_75316625_75316668	0.246776	ACAGUAU	ENSMUST00000168937.8|Mapk6|ENSMUSG00000042688.17|mitogen-activated protein kinase 6
mm39_v1_chr5_+_108416763_108416790	0.246322	ACAGUAU	ENSMUST00000031190.5|Dr1|ENSMUSG00000029265.5|down-regulator of transcription 1
mm39_v1_chr9_+_32607301_32607417	0.245572	ACAGUAU	ENSMUST00000034534.13|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000050797.14|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000184887.2|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain
mm39_v1_chr2_-_65955338_65955486	0.244704	ACAGUAU	ENSMUST00000028378.4|Galnt3|ENSMUSG00000026994.10|polypeptide N-acetylgalactosaminyltransferase 3
mm39_v1_chr4_+_132738787_132738817	0.236297	ACAGUAU	ENSMUST00000105915.8|Ahdc1|ENSMUSG00000037692.15|AT hook, DNA binding motif, containing 1	ENSMUST00000105916.8|Ahdc1|ENSMUSG00000037692.15|AT hook, DNA binding motif, containing 1
mm39_v1_chr10_-_94780695_94780724	0.231939	ACAGUAU	ENSMUST00000099337.5|Plxnc1|ENSMUSG00000074785.6|plexin C1
mm39_v1_chrX_+_9066105_9066147	0.230272	ACAGUAU	ENSMUST00000069763.3|Lancl3|ENSMUSG00000047344.10|LanC lantibiotic synthetase component C-like 3 (bacterial)
mm39_v1_chr7_-_65020955_65021041	0.228611	ACAGUAU	ENSMUST00000102592.10|Tjp1|ENSMUSG00000030516.15|tight junction protein 1
mm39_v1_chr18_-_24153805_24153876	0.227346	ACAGUAU	ENSMUST00000066497.12|Zfp24|ENSMUSG00000051469.15|zinc finger protein 24
mm39_v1_chr17_+_15720150_15720222	0.221518	ACAGUAU	ENSMUST00000159197.8|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000014911.12|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000162505.8|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000147081.9|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000118001.8|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000143924.8|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000119879.9|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000155051.8|Tbp|ENSMUSG00000014767.18|TATA box binding protein	ENSMUST00000117593.8|Tbp|ENSMUSG00000014767.18|TATA box binding protein
mm39_v1_chr12_+_4642987_4643091	0.221183	ACAGUAU	ENSMUST00000062580.8|Itsn2|ENSMUSG00000020640.11|intersectin 2	ENSMUST00000220311.2|Itsn2|ENSMUSG00000020640.11|intersectin 2
mm39_v1_chr11_-_51647290_51647445	0.21876	ACAGUAU	ENSMUST00000109097.9|Sec24a|ENSMUSG00000036391.17|Sec24 related gene family, member A (S. cerevisiae)
mm39_v1_chr14_-_61677258_61677323	0.218585	ACAGUAU	ENSMUST00000022496.9|Kpna3|ENSMUSG00000021929.10|karyopherin (importin) alpha 3
mm39_v1_chr7_+_16043502_16043567	0.217962	ACAGUAU	ENSMUST00000002152.13|Bbc3|ENSMUSG00000002083.14|BCL2 binding component 3
mm39_v1_chr17_-_80787398_80787398	0.216966	ACAGUAU	ENSMUST00000068714.7|Sos1|ENSMUSG00000024241.8|SOS Ras/Rac guanine nucleotide exchange factor 1
mm39_v1_chr19_+_3901797_3901840	0.213619	ACAGUAU	ENSMUST00000072055.13|Chka|ENSMUSG00000024843.16|choline kinase alpha
mm39_v1_chr5_+_139238069_139238088	0.204996	ACAGUAU	ENSMUST00000026976.12|Get4|ENSMUSG00000025858.13|golgi to ER traffic protein 4
mm39_v1_chr2_-_45003270_45003296	0.204559	ACAGUAU	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr2_+_127967951_127967976	0.202205	ACAGUAU	ENSMUST00000089634.12|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000019281.14|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000110341.9|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000103211.8|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000103210.2|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)
mm39_v1_chr11_+_77576981_77577005	0.199468	ACAGUAU	ENSMUST00000100802.11|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2	ENSMUST00000181023.2|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2
mm39_v1_chr14_-_24295988_24295988	0.197843	ACAGUAU	ENSMUST00000073687.13|Dlg5|ENSMUSG00000021782.15|discs large MAGUK scaffold protein 5	ENSMUST00000090398.11|Dlg5|ENSMUSG00000021782.15|discs large MAGUK scaffold protein 5
mm39_v1_chr1_+_132345293_132345348	0.195984	ACAGUAU	ENSMUST00000045110.14|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase	ENSMUST00000188389.2|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase
mm39_v1_chr12_+_108145997_108146089	0.195817	ACAGUAU	ENSMUST00000101055.5|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr10_+_111342147_111342278	0.189451	ACAGUAU	ENSMUST00000164773.2|Phlda1|ENSMUSG00000020205.9|pleckstrin homology like domain, family A, member 1
mm39_v1_chr13_-_103911092_103911139	0.182954	ACAGUAU	ENSMUST00000074616.7|Srek1|ENSMUSG00000032621.9|splicing regulatory glutamine/lysine-rich protein 1
mm39_v1_chr1_-_152642032_152642069	0.182661	ACAGUAU	ENSMUST00000111859.8|Rgl1|ENSMUSG00000026482.14|ral guanine nucleotide dissociation stimulator,-like 1
mm39_v1_chr5_-_90514360_90514469	0.181515	ACAGUAU	ENSMUST00000168058.7|Ankrd17|ENSMUSG00000055204.16|ankyrin repeat domain 17	ENSMUST00000014421.15|Ankrd17|ENSMUSG00000055204.16|ankyrin repeat domain 17
mm39_v1_chr8_-_32408864_32408913	0.18149	ACAGUAU	ENSMUST00000073884.7|Nrg1|ENSMUSG00000062991.10|neuregulin 1	ENSMUST00000238812.2|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chr9_+_56982622_56982727	0.180782	ACAGUAU	ENSMUST00000167715.8|Sin3a|ENSMUSG00000042557.15|transcriptional regulator, SIN3A (yeast)
mm39_v1_chr2_-_25982160_25982189	0.180575	ACAGUAU	ENSMUST00000114159.9|Nacc2|ENSMUSG00000026932.15|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm39_v1_chr10_+_95776543_95776647	0.179877	ACAGUAU	ENSMUST00000053484.8|Eea1|ENSMUSG00000036499.10|early endosome antigen 1
mm39_v1_chr1_-_136273811_136273884	0.176753	ACAGUAU	ENSMUST00000048309.12|Camsap2|ENSMUSG00000041570.15|calmodulin regulated spectrin-associated protein family, member 2
mm39_v1_chr1_+_187730018_187730031	0.17251	ACAGUAU	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr2_-_59955995_59956119	0.171712	ACAGUAU	ENSMUST00000112550.8|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr12_+_85043083_85043193	0.170895	ACAGUAU	ENSMUST00000168977.8|Ylpm1|ENSMUSG00000021244.16|YLP motif containing 1	ENSMUST00000021670.15|Ylpm1|ENSMUSG00000021244.16|YLP motif containing 1
mm39_v1_chr6_+_95094721_95094938	0.168897	ACAGUAU	ENSMUST00000032107.10|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8	ENSMUST00000119582.3|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8
mm39_v1_chr10_+_25235696_25235742	0.166694	ACAGUAU	ENSMUST00000053748.16|Epb41l2|ENSMUSG00000019978.17|erythrocyte membrane protein band 4.1 like 2
mm39_v1_chr1_+_65225834_65225881	0.164864	ACAGUAU	ENSMUST00000081154.14|Pikfyve|ENSMUSG00000025949.17|phosphoinositide kinase, FYVE type zinc finger containing
mm39_v1_chr12_-_110662765_110662852	0.16351	ACAGUAU	ENSMUST00000094361.11|Hsp90aa1|ENSMUSG00000021270.14|heat shock protein 90, alpha (cytosolic), class A member 1
mm39_v1_chr9_+_70114623_70114650	0.158054	ACAGUAU	ENSMUST00000034745.9|Myo1e|ENSMUSG00000032220.11|myosin IE
mm39_v1_chr7_-_98305737_98305808	0.157442	ACAGUAU	ENSMUST00000205911.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000038359.6|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000206611.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000206619.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor
mm39_v1_chr11_-_61470462_61470533	0.156639	ACAGUAU	ENSMUST00000147501.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000146455.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108711.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108712.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000001063.15|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108713.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000179936.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000178202.8|Epn2|ENSMUSG00000001036.18|epsin 2
mm39_v1_chr17_-_79662514_79662525	0.155196	ACAGUAU	ENSMUST00000068958.9|Cdc42ep3|ENSMUSG00000036533.10|CDC42 effector protein (Rho GTPase binding) 3
mm39_v1_chr17_-_12537635_12537690	0.154594	ACAGUAU	ENSMUST00000233755.2|Map3k4|ENSMUSG00000014426.10|mitogen-activated protein kinase kinase kinase 4	ENSMUST00000089058.7|Map3k4|ENSMUSG00000014426.10|mitogen-activated protein kinase kinase kinase 4
mm39_v1_chr13_+_35843816_35843853	0.151295	ACAGUAU	ENSMUST00000075220.14|Cdyl|ENSMUSG00000059288.15|chromodomain protein, Y chromosome-like
mm39_v1_chr19_-_17814984_17815006	0.15048	ACAGUAU	ENSMUST00000025618.16|Pcsk5|ENSMUSG00000024713.17|proprotein convertase subtilisin/kexin type 5	ENSMUST00000050715.10|Pcsk5|ENSMUSG00000024713.17|proprotein convertase subtilisin/kexin type 5
mm39_v1_chr13_+_49495025_49495099	0.150289	ACAGUAU	ENSMUST00000048544.14|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110084.4|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110085.11|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2
mm39_v1_chr3_-_153430741_153430816	0.150276	ACAGUAU	ENSMUST00000064460.7|St6galnac3|ENSMUSG00000052544.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	ENSMUST00000200397.5|St6galnac3|ENSMUSG00000052544.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
mm39_v1_chr7_+_66489500_66489561	0.144782	ACAGUAU	ENSMUST00000107478.9|Adamts17|ENSMUSG00000058145.17|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
mm39_v1_chrX_-_107877909_107877987	0.144608	ACAGUAU	ENSMUST00000101283.4|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3	ENSMUST00000150434.8|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3
mm39_v1_chr1_-_58625431_58625482	0.142296	ACAGUAU	ENSMUST00000161000.2|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B	ENSMUST00000161600.8|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B
mm39_v1_chr4_-_138641225_138641296	0.140158	ACAGUAU	ENSMUST00000097830.4|Otud3|ENSMUSG00000041161.9|OTU domain containing 3
mm39_v1_chr13_-_57043550_57043632	0.138848	ACAGUAU	ENSMUST00000022023.13|Trpc7|ENSMUSG00000021541.15|transient receptor potential cation channel, subfamily C, member 7	ENSMUST00000174457.9|Trpc7|ENSMUSG00000021541.15|transient receptor potential cation channel, subfamily C, member 7	ENSMUST00000109871.8|Trpc7|ENSMUSG00000021541.15|transient receptor potential cation channel, subfamily C, member 7
mm39_v1_chr8_+_48277493_48277517	0.138485	ACAGUAU	ENSMUST00000038693.8|Cldn22|ENSMUSG00000038064.8|claudin 22
mm39_v1_chr7_-_116042674_116042698	0.137829	ACAGUAU	ENSMUST00000170430.3|Pik3c2a|ENSMUSG00000030660.10|phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	ENSMUST00000206219.2|Pik3c2a|ENSMUSG00000030660.10|phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
mm39_v1_chr10_+_80015316_80015375	0.13738	ACAGUAU	ENSMUST00000003154.7|Efna2|ENSMUSG00000003070.7|ephrin A2
mm39_v1_chr3_+_96542746_96542795	0.13527	ACAGUAU	ENSMUST00000118557.8|Pex11b|ENSMUSG00000028102.16|peroxisomal biogenesis factor 11 beta
mm39_v1_chr5_+_122422428_122422461	0.134448	ACAGUAU	ENSMUST00000053426.15|Pptc7|ENSMUSG00000038582.16|PTC7 protein phosphatase homolog
mm39_v1_chr3_-_133250129_133250174	0.131483	ACAGUAU	ENSMUST00000196398.5|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2	ENSMUST00000098603.8|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2
mm39_v1_chr8_+_26648169_26648282	0.129886	ACAGUAU	ENSMUST00000036807.13|Thap1|ENSMUSG00000037214.13|THAP domain containing, apoptosis associated protein 1	ENSMUST00000130231.2|Thap1|ENSMUSG00000037214.13|THAP domain containing, apoptosis associated protein 1
mm39_v1_chr8_-_81741495_81741569	0.129587	ACAGUAU	ENSMUST00000042724.8|Usp38|ENSMUSG00000038250.10|ubiquitin specific peptidase 38
mm39_v1_chr1_-_30912662_30912738	0.129405	ACAGUAU	ENSMUST00000186733.7|Phf3|ENSMUSG00000048874.16|PHD finger protein 3
mm39_v1_chr5_+_67125759_67125790	0.127921	ACAGUAU	ENSMUST00000238993.2|Limch1|ENSMUSG00000037736.21|LIM and calponin homology domains 1	ENSMUST00000038188.14|Limch1|ENSMUSG00000037736.21|LIM and calponin homology domains 1
mm39_v1_chr18_-_14815807_14815971	0.126613	ACAGUAU	ENSMUST00000040964.13|Ss18|ENSMUSG00000037013.18|SS18, nBAF chromatin remodeling complex subunit	ENSMUST00000234524.2|Ss18|ENSMUSG00000037013.18|SS18, nBAF chromatin remodeling complex subunit	ENSMUST00000092041.11|Ss18|ENSMUSG00000037013.18|SS18, nBAF chromatin remodeling complex subunit	ENSMUST00000040924.9|Ss18|ENSMUSG00000037013.18|SS18, nBAF chromatin remodeling complex subunit
mm39_v1_chr3_+_58322119_58322161	0.125474	ACAGUAU	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr2_-_9883391_9883418	0.124469	ACAGUAU	ENSMUST00000102976.4|Gata3|ENSMUSG00000015619.11|GATA binding protein 3
mm39_v1_chr9_-_30833748_30833861	0.121184	ACAGUAU	ENSMUST00000065112.7|Adamts15|ENSMUSG00000033453.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15
mm39_v1_chr5_+_89034666_89034684	0.119858	ACAGUAU	ENSMUST00000148750.8|Slc4a4|ENSMUSG00000060961.17|solute carrier family 4 (anion exchanger), member 4
mm39_v1_chr17_+_26934617_26934698	0.118178	ACAGUAU	ENSMUST00000062519.14|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000144221.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000142539.8|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000151681.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor
mm39_v1_chrX_-_50106844_50106910	0.11562	ACAGUAU	ENSMUST00000053593.8|Rap2c|ENSMUSG00000050029.8|RAP2C, member of RAS oncogene family
mm39_v1_chr6_-_90787100_90787142	0.115603	ACAGUAU	ENSMUST00000101151.10|Iqsec1|ENSMUSG00000034312.16|IQ motif and Sec7 domain 1
mm39_v1_chr8_+_23901506_23901523	0.114987	ACAGUAU	ENSMUST00000033952.8|Sfrp1|ENSMUSG00000031548.8|secreted frizzled-related protein 1
mm39_v1_chr16_-_17709457_17709564	0.114728	ACAGUAU	ENSMUST00000117082.2|Dgcr2|ENSMUSG00000003166.21|DiGeorge syndrome critical region gene 2	ENSMUST00000066127.13|Dgcr2|ENSMUSG00000003166.21|DiGeorge syndrome critical region gene 2	ENSMUST00000117945.8|Dgcr2|ENSMUSG00000003166.21|DiGeorge syndrome critical region gene 2	ENSMUST00000012152.13|Dgcr2|ENSMUSG00000003166.21|DiGeorge syndrome critical region gene 2
mm39_v1_chr18_+_68066328_68066378	0.112255	ACAGUAU	ENSMUST00000063775.5|Ldlrad4|ENSMUSG00000024544.10|low density lipoprotein receptor class A domain containing 4
mm39_v1_chr10_+_3690348_3690432	0.112119	ACAGUAU	ENSMUST00000120274.8|Plekhg1|ENSMUSG00000040624.19|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
mm39_v1_chr18_-_10610048_10610146	0.108188	ACAGUAU	ENSMUST00000115864.8|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1	ENSMUST00000145320.2|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1	ENSMUST00000097670.10|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1
mm39_v1_chr5_-_21156766_21156824	0.108111	ACAGUAU	ENSMUST00000036489.10|Rsbn1l|ENSMUSG00000039968.10|round spermatid basic protein 1-like
mm39_v1_chr13_+_14238361_14238407	0.107691	ACAGUAU	ENSMUST00000129488.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110536.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110534.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000039538.15|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110533.2|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)
mm39_v1_chr18_+_69478790_69478882	0.105467	ACAGUAU	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr14_+_26959975_26960003	0.103937	ACAGUAU	ENSMUST00000049206.6|Arhgef3|ENSMUSG00000021895.11|Rho guanine nucleotide exchange factor (GEF) 3
mm39_v1_chr17_-_74630882_74630947	0.102491	ACAGUAU	ENSMUST00000164832.9|Dpy30|ENSMUSG00000024067.15|dpy-30, histone methyltransferase complex regulatory subunit
mm39_v1_chr12_+_111504450_111504633	0.102207	ACAGUAU	ENSMUST00000166123.9|Eif5|ENSMUSG00000021282.18|eukaryotic translation initiation factor 5	ENSMUST00000222441.2|Eif5|ENSMUSG00000021282.18|eukaryotic translation initiation factor 5
mm39_v1_chr19_-_41252370_41252447	0.0996031	ACAGUAU	ENSMUST00000237871.2|Tm9sf3|ENSMUSG00000025016.12|transmembrane 9 superfamily member 3	ENSMUST00000025989.10|Tm9sf3|ENSMUSG00000025016.12|transmembrane 9 superfamily member 3
mm39_v1_chr7_-_132616977_132617058	0.0981946	ACAGUAU	ENSMUST00000169570.8|Ctbp2|ENSMUSG00000030970.17|C-terminal binding protein 2
mm39_v1_chr12_+_83678987_83679099	0.0972079	ACAGUAU	ENSMUST00000048155.16|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182618.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000183154.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182036.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182347.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25
mm39_v1_chr2_-_24809583_24809628	0.0969964	ACAGUAU	ENSMUST00000046227.12|Ehmt1|ENSMUSG00000036893.18|euchromatic histone methyltransferase 1	ENSMUST00000114432.9|Ehmt1|ENSMUSG00000036893.18|euchromatic histone methyltransferase 1	ENSMUST00000091348.11|Ehmt1|ENSMUSG00000036893.18|euchromatic histone methyltransferase 1	ENSMUST00000102938.10|Ehmt1|ENSMUSG00000036893.18|euchromatic histone methyltransferase 1	ENSMUST00000150379.2|Ehmt1|ENSMUSG00000036893.18|euchromatic histone methyltransferase 1	ENSMUST00000152161.8|Ehmt1|ENSMUSG00000036893.18|euchromatic histone methyltransferase 1	ENSMUST00000147147.8|Ehmt1|ENSMUSG00000036893.18|euchromatic histone methyltransferase 1
mm39_v1_chr17_-_75858835_75858941	0.0965981	ACAGUAU	ENSMUST00000234785.2|Fam98a|ENSMUSG00000002017.11|family with sequence similarity 98, member A	ENSMUST00000112507.4|Fam98a|ENSMUSG00000002017.11|family with sequence similarity 98, member A
mm39_v1_chr7_-_48530777_48530794	0.0963869	ACAGUAU	ENSMUST00000058745.15|E2f8|ENSMUSG00000046179.18|E2F transcription factor 8
mm39_v1_chrX_+_135950334_135950415	0.0955763	ACAGUAU	ENSMUST00000047852.8|Fam199x|ENSMUSG00000042595.8|family with sequence similarity 199, X-linked
mm39_v1_chr15_+_68800261_68800271	0.0919471	ACAGUAU	ENSMUST00000022954.7|Khdrbs3|ENSMUSG00000022332.9|KH domain containing, RNA binding, signal transduction associated 3
mm39_v1_chr4_-_133480922_133480977	0.0891449	ACAGUAU	ENSMUST00000145664.9|Arid1a|ENSMUSG00000007880.17|AT rich interactive domain 1A (SWI-like)	ENSMUST00000105897.10|Arid1a|ENSMUSG00000007880.17|AT rich interactive domain 1A (SWI-like)
mm39_v1_chr6_+_113054314_113054343	0.0883047	ACAGUAU	ENSMUST00000042889.12|Setd5|ENSMUSG00000034269.13|SET domain containing 5
mm39_v1_chr16_+_33201164_33201206	0.0875354	ACAGUAU	ENSMUST00000165418.9|Zfp148|ENSMUSG00000022811.18|zinc finger protein 148
mm39_v1_chr9_-_50920236_50920380	0.0832749	ACAGUAU	ENSMUST00000176824.8|Sik2|ENSMUSG00000037112.17|salt inducible kinase 2	ENSMUST00000176663.8|Sik2|ENSMUSG00000037112.17|salt inducible kinase 2	ENSMUST00000041375.11|Sik2|ENSMUSG00000037112.17|salt inducible kinase 2
mm39_v1_chr3_-_9675130_9675146	0.0824817	ACAGUAU	ENSMUST00000041124.13|Zfp704|ENSMUSG00000040209.13|zinc finger protein 704
mm39_v1_chr9_+_72439496_72439553	0.0809543	ACAGUAU	ENSMUST00000163401.9|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7	ENSMUST00000093820.10|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7
mm39_v1_chr6_-_48063464_48063591	0.0781888	ACAGUAU	ENSMUST00000073124.9|Zfp746|ENSMUSG00000057691.9|zinc finger protein 746	ENSMUST00000203609.3|Zfp746|ENSMUSG00000057691.9|zinc finger protein 746
mm39_v1_chr9_-_96634874_96634924	0.0777325	ACAGUAU	ENSMUST00000152594.8|Zbtb38|ENSMUSG00000040433.17|zinc finger and BTB domain containing 38
mm39_v1_chr2_+_166647426_166647525	0.0776278	ACAGUAU	ENSMUST00000099078.10|Arfgef2|ENSMUSG00000074582.11|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm39_v1_chr17_+_8384333_8384426	0.0751286	ACAGUAU	ENSMUST00000097419.10|Cep43|ENSMUSG00000069135.12|centrosomal protein 43	ENSMUST00000024636.15|Cep43|ENSMUSG00000069135.12|centrosomal protein 43
mm39_v1_chr5_-_114518566_114518581	0.0725896	ACAGUAU	ENSMUST00000102581.11|Kctd10|ENSMUSG00000001098.16|potassium channel tetramerisation domain containing 10
mm39_v1_chr7_-_37718916_37718991	0.0691846	ACAGUAU	ENSMUST00000085513.6|Uri1|ENSMUSG00000030421.10|URI1, prefoldin-like chaperone	ENSMUST00000206327.2|Uri1|ENSMUSG00000030421.10|URI1, prefoldin-like chaperone
mm39_v1_chr6_+_107506678_107506741	0.0665535	ACAGUAU	ENSMUST00000049285.10|Lrrn1|ENSMUSG00000034648.10|leucine rich repeat protein 1, neuronal
mm39_v1_chr3_-_113423774_113423798	0.0643015	ACAGUAU	ENSMUST00000092154.10|Rnpc3|ENSMUSG00000027981.15|RNA-binding region (RNP1, RRM) containing 3	ENSMUST00000106536.8|Rnpc3|ENSMUSG00000027981.15|RNA-binding region (RNP1, RRM) containing 3	ENSMUST00000106535.2|Rnpc3|ENSMUSG00000027981.15|RNA-binding region (RNP1, RRM) containing 3
mm39_v1_chr6_-_52194440_52194485	0.0642099	ACAGUAU	ENSMUST00000048715.9|Hoxa7|ENSMUSG00000038236.9|homeobox A7
mm39_v1_chrX_+_81992467_81992521	0.0634242	ACAGUAU	ENSMUST00000114000.8|Dmd|ENSMUSG00000045103.20|dystrophin, muscular dystrophy
mm39_v1_chr3_+_31149201_31149244	0.0624002	ACAGUAU	ENSMUST00000118470.8|Skil|ENSMUSG00000027660.17|SKI-like	ENSMUST00000029194.12|Skil|ENSMUSG00000027660.17|SKI-like	ENSMUST00000123532.2|Skil|ENSMUSG00000027660.17|SKI-like
mm39_v1_chr3_-_105708632_105708694	0.0621632	ACAGUAU	ENSMUST00000090678.11|Rap1a|ENSMUSG00000068798.11|RAS-related protein 1a
mm39_v1_chr15_+_99290763_99290785	0.0602443	ACAGUAU	ENSMUST00000023749.15|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6
mm39_v1_chr6_+_113284098_113284390	0.0593373	ACAGUAU	ENSMUST00000113122.8|Brpf1|ENSMUSG00000001632.17|bromodomain and PHD finger containing, 1	ENSMUST00000204198.3|Brpf1|ENSMUSG00000001632.17|bromodomain and PHD finger containing, 1	ENSMUST00000113121.8|Brpf1|ENSMUSG00000001632.17|bromodomain and PHD finger containing, 1	ENSMUST00000113119.8|Brpf1|ENSMUSG00000001632.17|bromodomain and PHD finger containing, 1	ENSMUST00000113117.4|Brpf1|ENSMUSG00000001632.17|bromodomain and PHD finger containing, 1	ENSMUST00000204626.3|Brpf1|ENSMUSG00000001632.17|bromodomain and PHD finger containing, 1	ENSMUST00000203577.2|Brpf1|ENSMUSG00000001632.17|bromodomain and PHD finger containing, 1
mm39_v1_chrX_+_37405054_37405071	0.0581952	ACAGUAU	ENSMUST00000016471.9|Atp1b4|ENSMUSG00000016327.10|ATPase, (Na+)/K+ transporting, beta 4 polypeptide	ENSMUST00000115134.2|Atp1b4|ENSMUSG00000016327.10|ATPase, (Na+)/K+ transporting, beta 4 polypeptide
mm39_v1_chr18_-_61533434_61533520	0.0539162	ACAGUAU	ENSMUST00000063307.6|Ppargc1b|ENSMUSG00000033871.15|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	ENSMUST00000075299.13|Ppargc1b|ENSMUSG00000033871.15|peroxisome proliferative activated receptor, gamma, coactivator 1 beta
mm39_v1_chr9_-_103242096_103242164	0.0536275	ACAGUAU	ENSMUST00000116517.9|Cdv3|ENSMUSG00000032803.16|carnitine deficiency-associated gene expressed in ventricle 3
mm39_v1_chr1_-_10302895_10302895	0.0531304	ACAGUAU	ENSMUST00000088615.11|Arfgef1|ENSMUSG00000067851.12|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	ENSMUST00000131556.2|Arfgef1|ENSMUSG00000067851.12|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
mm39_v1_chr5_+_139777263_139777271	0.0518409	ACAGUAU	ENSMUST00000018287.10|Mafk|ENSMUSG00000018143.11|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)
mm39_v1_chr10_-_116984386_116984452	0.0492943	ACAGUAU	ENSMUST00000020381.5|Frs2|ENSMUSG00000020170.5|fibroblast growth factor receptor substrate 2
mm39_v1_chr11_+_97253221_97253377	0.0467296	ACAGUAU	ENSMUST00000238729.2|Socs7|ENSMUSG00000038485.7|suppressor of cytokine signaling 7	ENSMUST00000045540.4|Socs7|ENSMUSG00000038485.7|suppressor of cytokine signaling 7
mm39_v1_chr1_-_132953068_132953154	0.0460264	ACAGUAU	ENSMUST00000186617.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067429.10|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067398.13|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000188090.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4
mm39_v1_chr8_+_23349543_23349570	0.0457273	ACAGUAU	ENSMUST00000238975.2|Kat6a|ENSMUSG00000031540.15|K(lysine) acetyltransferase 6A	ENSMUST00000110696.8|Kat6a|ENSMUSG00000031540.15|K(lysine) acetyltransferase 6A	ENSMUST00000044331.7|Kat6a|ENSMUSG00000031540.15|K(lysine) acetyltransferase 6A
mm39_v1_chr16_-_13485986_13486045	0.040379	ACAGUAU	ENSMUST00000058884.10|Parn|ENSMUSG00000022685.10|poly(A)-specific ribonuclease (deadenylation nuclease)
mm39_v1_chr1_-_178165223_178165362	0.0402628	ACAGUAU	ENSMUST00000037748.9|Hnrnpu|ENSMUSG00000039630.11|heterogeneous nuclear ribonucleoprotein U
mm39_v1_chr6_+_21215472_21215502	0.0402621	ACAGUAU	ENSMUST00000081542.6|Kcnd2|ENSMUSG00000060882.6|potassium voltage-gated channel, Shal-related family, member 2
mm39_v1_chr15_-_28025920_28025970	0.0354411	ACAGUAU	ENSMUST00000090247.7|Trio|ENSMUSG00000022263.11|triple functional domain (PTPRF interacting)
mm39_v1_chr2_+_121786444_121786498	0.0337536	ACAGUAU	ENSMUST00000036647.13|Ctdspl2|ENSMUSG00000033411.17|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm39_v1_chrX_-_93166992_93167018	0.0308302	ACAGUAU	ENSMUST00000088102.12|Zfx|ENSMUSG00000079509.11|zinc finger protein X-linked	ENSMUST00000113927.8|Zfx|ENSMUSG00000079509.11|zinc finger protein X-linked
mm39_v1_chr14_+_101891416_101891484	0.0293121	ACAGUAU	ENSMUST00000002289.8|Uchl3|ENSMUSG00000022111.10|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)
mm39_v1_chr18_-_39623698_39623771	0.027608	ACAGUAU	ENSMUST00000115567.8|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr7_-_121306476_121306685	0.0237104	ACAGUAU	ENSMUST00000046929.7|Usp31|ENSMUSG00000063317.8|ubiquitin specific peptidase 31
mm39_v1_chr5_-_114131934_114131964	0.0205395	ACAGUAU	ENSMUST00000159592.8|Ssh1|ENSMUSG00000042121.17|slingshot protein phosphatase 1
mm39_v1_chr15_-_102579463_102579562	0.0186526	ACAGUAU	ENSMUST00000185641.7|Atp5g2|ENSMUSG00000062683.12|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)
mm39_v1_chr7_+_122723365_122723446	0.0164708	ACAGUAU	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr4_-_44167509_44167609	0.0116341	ACAGUAU	ENSMUST00000098098.9|Rnf38|ENSMUSG00000035696.16|ring finger protein 38
mm39_v1_chr11_+_77985486_77985504	0.00916969	ACAGUAU	ENSMUST00000073705.12|Fam222b|ENSMUSG00000037750.17|family with sequence similarity 222, member B
mm39_v1_chr8_-_23747023_23747047	0.00831038	ACAGUAU	ENSMUST00000121783.7|Golga7|ENSMUSG00000015341.18|golgi autoantigen, golgin subfamily a, 7
mm39_v1_chr11_-_23845207_23845280	0.00790307	ACAGUAU	ENSMUST00000102863.3|Papolg|ENSMUSG00000020273.14|poly(A) polymerase gamma	ENSMUST00000020513.10|Papolg|ENSMUSG00000020273.14|poly(A) polymerase gamma
mm39_v1_chr2_-_10053381_10053432	0.00657238	ACAGUAU	ENSMUST00000026888.11|Taf3|ENSMUSG00000025782.13|TATA-box binding protein associated factor 3
mm39_v1_chr8_+_23247760_23247777	0.00265148	ACAGUAU	ENSMUST00000033941.7|Plat|ENSMUSG00000031538.7|plasminogen activator, tissue
mm39_v1_chr5_-_74229021_74229099	0.00205631	ACAGUAU	ENSMUST00000119154.8|Usp46|ENSMUSG00000054814.15|ubiquitin specific peptidase 46	ENSMUST00000068058.14|Usp46|ENSMUSG00000054814.15|ubiquitin specific peptidase 46
mm39_v1_chr7_-_66077215_66077265	0.0014314	ACAGUAU	ENSMUST00000015278.15|Aldh1a3|ENSMUSG00000015134.16|aldehyde dehydrogenase family 1, subfamily A3
mm39_v1_chr16_+_57173456_57173480	0.000923002	ACAGUAU	ENSMUST00000159816.8|Filip1l|ENSMUSG00000043336.15|filamin A interacting protein 1-like
