mm39_v1_chrX_-_102230225_102230277	2.63822	ACUGCAU	ENSMUST00000121720.2|Nap1l2|ENSMUSG00000082229.2|nucleosome assembly protein 1-like 2
mm39_v1_chr12_-_11486544_11486655	2.37544	ACUGCAU	ENSMUST00000072299.7|Vsnl1|ENSMUSG00000054459.9|visinin-like 1
mm39_v1_chr8_+_55407872_55407889	1.80638	ACUGCAU	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr16_+_6166982_6167008	1.58117	ACUGCAU	ENSMUST00000056416.9|Rbfox1|ENSMUSG00000008658.17|RNA binding protein, fox-1 homolog (C. elegans) 1
mm39_v1_chr18_+_61058684_61058712	1.39139	ACUGCAU	ENSMUST00000102888.10|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha	ENSMUST00000025519.11|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha
mm39_v1_chr11_-_28534260_28534325	1.27234	ACUGCAU	ENSMUST00000093253.10|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A	ENSMUST00000109502.9|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A	ENSMUST00000042534.15|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A
mm39_v1_chr8_+_114932312_114932411	1.22591	ACUGCAU	ENSMUST00000049509.7|Vat1l|ENSMUSG00000046844.7|vesicle amine transport protein 1 like	ENSMUST00000150963.2|Vat1l|ENSMUSG00000046844.7|vesicle amine transport protein 1 like
mm39_v1_chr6_-_23839419_23839484	1.09343	ACUGCAU	ENSMUST00000115358.9|Cadps2|ENSMUSG00000017978.19|Ca2+-dependent activator protein for secretion 2	ENSMUST00000163871.9|Cadps2|ENSMUSG00000017978.19|Ca2+-dependent activator protein for secretion 2
mm39_v1_chr6_-_24956296_24956296	1.09283	ACUGCAU	ENSMUST00000127247.4|Tmem229a|ENSMUSG00000048022.12|transmembrane protein 229A
mm39_v1_chr5_+_146321757_146321804	0.922919	ACUGCAU	ENSMUST00000016143.9|Wasf3|ENSMUSG00000029636.12|WASP family, member 3
mm39_v1_chr2_+_102488985_102489014	0.901727	ACUGCAU	ENSMUST00000080210.10|Slc1a2|ENSMUSG00000005089.16|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm39_v1_chr9_-_107109108_107109117	0.858224	ACUGCAU	ENSMUST00000044532.11|Dock3|ENSMUSG00000039716.13|dedicator of cyto-kinesis 3
mm39_v1_chr19_-_21449916_21450036	0.851776	ACUGCAU	ENSMUST00000087600.10|Gda|ENSMUSG00000058624.14|guanine deaminase
mm39_v1_chrX_+_165021897_165021909	0.84516	ACUGCAU	ENSMUST00000112235.8|Gpm6b|ENSMUSG00000031342.18|glycoprotein m6b
mm39_v1_chr7_+_113365235_113365276	0.834662	ACUGCAU	ENSMUST00000046687.16|Spon1|ENSMUSG00000038156.17|spondin 1, (f-spondin) extracellular matrix protein
mm39_v1_chr10_+_82821304_82821338	0.821804	ACUGCAU	ENSMUST00000040110.8|Chst11|ENSMUSG00000034612.8|carbohydrate sulfotransferase 11
mm39_v1_chr5_+_89034666_89034684	0.794694	ACUGCAU	ENSMUST00000148750.8|Slc4a4|ENSMUSG00000060961.17|solute carrier family 4 (anion exchanger), member 4
mm39_v1_chr2_+_65451100_65451170	0.779908	ACUGCAU	ENSMUST00000144254.6|Scn2a|ENSMUSG00000075318.14|sodium channel, voltage-gated, type II, alpha	ENSMUST00000028377.14|Scn2a|ENSMUSG00000075318.14|sodium channel, voltage-gated, type II, alpha
mm39_v1_chr1_+_34840785_34840875	0.764148	ACUGCAU	ENSMUST00000047664.16|Arhgef4|ENSMUSG00000037509.22|Rho guanine nucleotide exchange factor (GEF) 4	ENSMUST00000211073.2|SMIM39|ENSMUSG00000118272.2|novel protein
mm39_v1_chr12_+_40495951_40496015	0.717049	ACUGCAU	ENSMUST00000037488.8|Dock4|ENSMUSG00000035954.11|dedicator of cytokinesis 4
mm39_v1_chr17_+_3376827_3376871	0.714513	ACUGCAU	ENSMUST00000169838.9|Tiam2|ENSMUSG00000023800.16|T cell lymphoma invasion and metastasis 2
mm39_v1_chr3_-_26187883_26187883	0.705428	ACUGCAU	ENSMUST00000108308.10|Nlgn1|ENSMUSG00000063887.14|neuroligin 1	ENSMUST00000075054.10|Nlgn1|ENSMUSG00000063887.14|neuroligin 1
mm39_v1_chr11_-_6425877_6425917	0.705125	ACUGCAU	ENSMUST00000179343.3|Purb|ENSMUSG00000094483.3|purine rich element binding protein B
mm39_v1_chr14_+_84680993_84681009	0.697224	ACUGCAU	ENSMUST00000071370.7|Pcdh17|ENSMUSG00000035566.8|protocadherin 17
mm39_v1_chrX_-_161426624_161426661	0.638402	ACUGCAU	ENSMUST00000112334.8|Reps2|ENSMUSG00000040855.16|RALBP1 associated Eps domain containing protein 2
mm39_v1_chr1_+_42734889_42734937	0.593258	ACUGCAU	ENSMUST00000054883.4|Pou3f3|ENSMUSG00000045515.5|POU domain, class 3, transcription factor 3
mm39_v1_chr4_-_91260265_91260306	0.583292	ACUGCAU	ENSMUST00000107110.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000008633.15|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000107118.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1
mm39_v1_chr12_+_49429574_49429666	0.560895	ACUGCAU	ENSMUST00000179669.3|Foxg1|ENSMUSG00000020950.11|forkhead box G1
mm39_v1_chr10_-_63926044_63926076	0.548457	ACUGCAU	ENSMUST00000105439.2|Lrrtm3|ENSMUSG00000042846.9|leucine rich repeat transmembrane neuronal 3
mm39_v1_chr1_-_16589511_16589560	0.531125	ACUGCAU	ENSMUST00000162751.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000027052.13|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000149320.9|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2
mm39_v1_chr6_+_103487973_103488039	0.519383	ACUGCAU	ENSMUST00000066905.9|Chl1|ENSMUSG00000030077.12|cell adhesion molecule L1-like
mm39_v1_chrX_-_7242065_7242069	0.486285	ACUGCAU	ENSMUST00000191497.2|Usp27x|ENSMUSG00000046269.18|ubiquitin specific peptidase 27, X chromosome	ENSMUST00000115744.2|Usp27x|ENSMUSG00000046269.18|ubiquitin specific peptidase 27, X chromosome
mm39_v1_chrX_+_55655111_55655177	0.480189	ACUGCAU	ENSMUST00000144068.8|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6	ENSMUST00000077741.12|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6	ENSMUST00000114784.4|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm39_v1_chr6_-_35516700_35516823	0.468614	ACUGCAU	ENSMUST00000201026.2|Mtpn|ENSMUSG00000029840.9|myotrophin	ENSMUST00000031866.9|Mtpn|ENSMUSG00000029840.9|myotrophin
mm39_v1_chr13_+_118851214_118851238	0.464602	ACUGCAU	ENSMUST00000022246.9|Fgf10|ENSMUSG00000021732.15|fibroblast growth factor 10
mm39_v1_chr9_-_91247809_91247827	0.446379	ACUGCAU	ENSMUST00000034927.13|Zic1|ENSMUSG00000032368.15|zinc finger protein of the cerebellum 1
mm39_v1_chr14_-_80008745_80008758	0.440975	ACUGCAU	ENSMUST00000039568.11|Pcdh8|ENSMUSG00000036422.11|protocadherin 8	ENSMUST00000195355.2|Pcdh8|ENSMUSG00000036422.11|protocadherin 8
mm39_v1_chr11_+_62172283_62172324	0.433758	ACUGCAU	ENSMUST00000101075.11|Ttc19|ENSMUSG00000042298.19|tetratricopeptide repeat domain 19	ENSMUST00000050646.13|Ttc19|ENSMUSG00000042298.19|tetratricopeptide repeat domain 19
mm39_v1_chr4_+_57637817_57637845	0.423676	ACUGCAU	ENSMUST00000150412.4|Pakap|ENSMUSG00000089945.14|paralemmin A kinase anchor protein
mm39_v1_chr5_+_13449276_13449350	0.392428	ACUGCAU	ENSMUST00000030714.9|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	ENSMUST00000141968.2|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm39_v1_chr6_-_92191878_92191906	0.37411	ACUGCAU	ENSMUST00000014694.11|Rbsn|ENSMUSG00000014550.15|rabenosyn, RAB effector
mm39_v1_chrX_-_135644424_135644442	0.366461	ACUGCAU	ENSMUST00000166478.8|Morf4l2|ENSMUSG00000031422.17|mortality factor 4 like 2	ENSMUST00000113097.8|Morf4l2|ENSMUSG00000031422.17|mortality factor 4 like 2
mm39_v1_chr4_-_3574844_3574853	0.361615	ACUGCAU	ENSMUST00000029891.12|Tmem68|ENSMUSG00000028232.14|transmembrane protein 68
mm39_v1_chr1_-_164285914_164285932	0.354225	ACUGCAU	ENSMUST00000027863.13|Atp1b1|ENSMUSG00000026576.13|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm39_v1_chr13_+_55840888_55840964	0.353896	ACUGCAU	ENSMUST00000057844.10|B230219D22Rik|ENSMUSG00000045767.10|RIKEN cDNA B230219D22 gene
mm39_v1_chr12_-_78908409_78908420	0.337305	ACUGCAU	ENSMUST00000021536.9|Atp6v1d|ENSMUSG00000021114.10|ATPase, H+ transporting, lysosomal V1 subunit D
mm39_v1_chr2_+_12928852_12928924	0.331112	ACUGCAU	ENSMUST00000154269.7|Pter|ENSMUSG00000026730.13|phosphotriesterase related	ENSMUST00000114796.9|Pter|ENSMUSG00000026730.13|phosphotriesterase related	ENSMUST00000134794.8|Pter|ENSMUSG00000026730.13|phosphotriesterase related	ENSMUST00000028063.7|Pter|ENSMUSG00000026730.13|phosphotriesterase related
mm39_v1_chr14_-_55329734_55329781	0.324181	ACUGCAU	ENSMUST00000036328.9|Zfhx2|ENSMUSG00000040721.10|zinc finger homeobox 2
mm39_v1_chr4_+_57845240_57845265	0.323429	ACUGCAU	ENSMUST00000102903.8|Pakap|ENSMUSG00000038729.25|paralemmin A kinase anchor protein	ENSMUST00000107598.9|Pakap|ENSMUSG00000038729.25|paralemmin A kinase anchor protein
mm39_v1_chr11_-_50732373_50732379	0.313356	ACUGCAU	ENSMUST00000109133.2|Zfp879|ENSMUSG00000044296.11|zinc finger protein 879	ENSMUST00000109134.8|Zfp879|ENSMUSG00000044296.11|zinc finger protein 879	ENSMUST00000049625.2|Zfp879|ENSMUSG00000044296.11|zinc finger protein 879
mm39_v1_chr3_-_138780937_138781008	0.282558	ACUGCAU	ENSMUST00000098574.9|Rap1gds1|ENSMUSG00000028149.13|RAP1, GTP-GDP dissociation stimulator 1
mm39_v1_chr16_+_16714333_16714462	0.276097	ACUGCAU	ENSMUST00000027373.12|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)	ENSMUST00000232247.2|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)
mm39_v1_chr8_-_105169621_105169679	0.269278	ACUGCAU	ENSMUST00000041769.8|Dync1li2|ENSMUSG00000035770.9|dynein, cytoplasmic 1 light intermediate chain 2
mm39_v1_chr5_+_134128543_134128635	0.267375	ACUGCAU	ENSMUST00000016088.9|Castor2|ENSMUSG00000015944.10|cytosolic arginine sensor for mTORC1 subunit 2
mm39_v1_chr2_+_181162278_181162324	0.267225	ACUGCAU	ENSMUST00000072334.12|Dnajc5|ENSMUSG00000000826.17|DnaJ heat shock protein family (Hsp40) member C5
mm39_v1_chr10_-_121883196_121883227	0.261747	ACUGCAU	ENSMUST00000020322.12|Srgap1|ENSMUSG00000020121.16|SLIT-ROBO Rho GTPase activating protein 1	ENSMUST00000081688.13|Srgap1|ENSMUSG00000020121.16|SLIT-ROBO Rho GTPase activating protein 1
mm39_v1_chr14_-_47059694_47059743	0.257551	ACUGCAU	ENSMUST00000111817.8|Gmfb|ENSMUSG00000062014.14|glia maturation factor, beta	ENSMUST00000079314.12|Gmfb|ENSMUSG00000062014.14|glia maturation factor, beta
mm39_v1_chrX_+_111513971_111513971	0.253653	ACUGCAU	ENSMUST00000071814.13|Zfp711|ENSMUSG00000025529.15|zinc finger protein 711
mm39_v1_chr5_-_24235646_24235705	0.250155	ACUGCAU	ENSMUST00000197617.5|Fam126a|ENSMUSG00000028995.15|family with sequence similarity 126, member A	ENSMUST00000030849.13|Fam126a|ENSMUSG00000028995.15|family with sequence similarity 126, member A
mm39_v1_chr9_-_66702750_66702804	0.248522	ACUGCAU	ENSMUST00000034934.15|Aph1b|ENSMUSG00000032375.16|aph1 homolog B, gamma secretase subunit
mm39_v1_chr16_-_31821938_31822105	0.22992	ACUGCAU	ENSMUST00000023457.13|Senp5|ENSMUSG00000022772.13|SUMO/sentrin specific peptidase 5	ENSMUST00000231360.2|Senp5|ENSMUSG00000022772.13|SUMO/sentrin specific peptidase 5
mm39_v1_chr3_-_94490023_94490077	0.225052	ACUGCAU	ENSMUST00000029783.16|Snx27|ENSMUSG00000028136.16|sorting nexin family member 27
mm39_v1_chr15_-_36794741_36794791	0.22235	ACUGCAU	ENSMUST00000110361.8|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	ENSMUST00000022894.14|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	ENSMUST00000110359.2|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm39_v1_chr1_-_16727067_16727121	0.217867	ACUGCAU	ENSMUST00000188641.7|Eloc|ENSMUSG00000079658.10|elongin C
mm39_v1_chr9_-_71393175_71393257	0.210444	ACUGCAU	ENSMUST00000233263.2|Polr2m|ENSMUSG00000032199.14|polymerase (RNA) II (DNA directed) polypeptide M	ENSMUST00000034720.12|Polr2m|ENSMUSG00000032199.14|polymerase (RNA) II (DNA directed) polypeptide M
mm39_v1_chr17_-_45744637_45744671	0.202049	ACUGCAU	ENSMUST00000024727.10|Cdc5l|ENSMUSG00000023932.10|cell division cycle 5-like (S. pombe)
mm39_v1_chr4_-_132570421_132570495	0.196406	ACUGCAU	ENSMUST00000105919.2|Ppp1r8|ENSMUSG00000028882.14|protein phosphatase 1, regulatory subunit 8	ENSMUST00000030702.14|Ppp1r8|ENSMUSG00000028882.14|protein phosphatase 1, regulatory subunit 8
mm39_v1_chr11_+_32592707_32592875	0.187781	ACUGCAU	ENSMUST00000109366.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000093205.13|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000076383.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11
mm39_v1_chr12_+_21161722_21161778	0.182148	ACUGCAU	ENSMUST00000064595.15|Asap2|ENSMUSG00000052632.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	ENSMUST00000101562.11|Asap2|ENSMUSG00000052632.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	ENSMUST00000090834.13|Asap2|ENSMUSG00000052632.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm39_v1_chr1_-_119765343_119765403	0.15961	ACUGCAU	ENSMUST00000064091.12|Ptpn4|ENSMUSG00000026384.14|protein tyrosine phosphatase, non-receptor type 4
mm39_v1_chr9_-_22300409_22300490	0.142329	ACUGCAU	ENSMUST00000040912.9|Anln|ENSMUSG00000036777.9|anillin, actin binding protein
mm39_v1_chr11_-_85125889_85125963	0.136985	ACUGCAU	ENSMUST00000018625.10|Appbp2|ENSMUSG00000018481.10|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm39_v1_chr1_+_88998115_88998147	0.134684	ACUGCAU	ENSMUST00000066279.11|Sh3bp4|ENSMUSG00000036206.13|SH3-domain binding protein 4
mm39_v1_chr2_-_23462052_23462124	0.133165	ACUGCAU	ENSMUST00000132484.7|Spopl|ENSMUSG00000026771.15|speckle-type BTB/POZ protein-like
mm39_v1_chr3_+_108444837_108444911	0.120703	ACUGCAU	ENSMUST00000029485.6|1700013F07Rik|ENSMUSG00000027886.8|RIKEN cDNA 1700013F07 gene
mm39_v1_chr2_-_120439764_120439798	0.107965	ACUGCAU	ENSMUST00000102496.8|Lrrc57|ENSMUSG00000027286.17|leucine rich repeat containing 57
mm39_v1_chr12_-_91815855_91815931	0.100286	ACUGCAU	ENSMUST00000167466.2|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)	ENSMUST00000021347.12|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)	ENSMUST00000178462.8|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)
mm39_v1_chr2_+_119505543_119505589	0.0953669	ACUGCAU	ENSMUST00000028767.9|Rtf1|ENSMUSG00000027304.10|RTF1, Paf1/RNA polymerase II complex component
mm39_v1_chr15_-_64184485_64184537	0.094111	ACUGCAU	ENSMUST00000177083.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1	ENSMUST00000177371.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1
mm39_v1_chr14_+_101967343_101967394	0.0890295	ACUGCAU	ENSMUST00000100337.10|Lmo7|ENSMUSG00000033060.17|LIM domain only 7
mm39_v1_chr16_+_14179421_14179475	0.0836109	ACUGCAU	ENSMUST00000100167.10|Abcc1|ENSMUSG00000023088.18|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	ENSMUST00000154748.8|Abcc1|ENSMUSG00000023088.18|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	ENSMUST00000134776.8|Abcc1|ENSMUSG00000023088.18|ATP-binding cassette, sub-family C (CFTR/MRP), member 1
mm39_v1_chr6_-_99643723_99643784	0.0762717	ACUGCAU	ENSMUST00000032151.3|Eif4e3|ENSMUSG00000093661.2|eukaryotic translation initiation factor 4E member 3
mm39_v1_chr11_-_82781369_82781452	0.060211	ACUGCAU	ENSMUST00000092844.13|Rad51d|ENSMUSG00000018841.18|RAD51 paralog D	ENSMUST00000021033.16|Rad51d|ENSMUSG00000018841.18|RAD51 paralog D	ENSMUST00000018985.15|Rad51d|ENSMUSG00000018841.18|RAD51 paralog D
mm39_v1_chr1_+_187730018_187730031	0.0506573	ACUGCAU	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr14_+_31881822_31881950	0.0467361	ACUGCAU	ENSMUST00000163336.8|Ncoa4|ENSMUSG00000056234.16|nuclear receptor coactivator 4	ENSMUST00000169722.8|Ncoa4|ENSMUSG00000056234.16|nuclear receptor coactivator 4	ENSMUST00000168385.8|Ncoa4|ENSMUSG00000056234.16|nuclear receptor coactivator 4
mm39_v1_chr16_+_55895786_55895855	0.0457076	ACUGCAU	ENSMUST00000049128.11|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000089362.9|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000202799.4|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000201011.2|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000202000.2|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7
mm39_v1_chr4_-_88357112_88357193	0.0438802	ACUGCAU	ENSMUST00000132493.8|Hacd4|ENSMUSG00000028497.13|3-hydroxyacyl-CoA dehydratase 4	ENSMUST00000030221.3|Hacd4|ENSMUSG00000028497.13|3-hydroxyacyl-CoA dehydratase 4	ENSMUST00000151280.8|Hacd4|ENSMUSG00000028497.13|3-hydroxyacyl-CoA dehydratase 4
mm39_v1_chr1_-_128345089_128345121	0.042282	ACUGCAU	ENSMUST00000027602.15|Dars|ENSMUSG00000026356.16|aspartyl-tRNA synthetase	ENSMUST00000064309.9|Dars|ENSMUSG00000026356.16|aspartyl-tRNA synthetase
mm39_v1_chr15_-_50753061_50753118	0.0322159	ACUGCAU	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chrX_-_103024847_103024893	0.0320518	ACUGCAU	ENSMUST00000121153.8|Rlim|ENSMUSG00000056537.12|ring finger protein, LIM domain interacting	ENSMUST00000070705.6|Rlim|ENSMUSG00000056537.12|ring finger protein, LIM domain interacting
mm39_v1_chr11_+_80099843_80099884	0.0312662	ACUGCAU	ENSMUST00000077451.14|Rhot1|ENSMUSG00000017686.18|ras homolog family member T1	ENSMUST00000055056.16|Rhot1|ENSMUSG00000017686.18|ras homolog family member T1
mm39_v1_chr18_+_44513547_44513644	0.0224067	ACUGCAU	ENSMUST00000202306.2|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2	ENSMUST00000025350.10|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2
mm39_v1_chr2_+_121786444_121786498	0.0206663	ACUGCAU	ENSMUST00000036647.13|Ctdspl2|ENSMUSG00000033411.17|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm39_v1_chr1_+_82817170_82817239	0.0172797	ACUGCAU	ENSMUST00000189220.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000113444.8|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr5_-_51711237_51711264	0.0158529	ACUGCAU	ENSMUST00000132734.8|Ppargc1a|ENSMUSG00000029167.14|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm39_v1_chr14_-_123220554_123220695	0.0133954	ACUGCAU	ENSMUST00000126867.8|Tmtc4|ENSMUSG00000041594.19|transmembrane and tetratricopeptide repeat containing 4	ENSMUST00000148661.2|Tmtc4|ENSMUSG00000041594.19|transmembrane and tetratricopeptide repeat containing 4	ENSMUST00000037726.14|Tmtc4|ENSMUSG00000041594.19|transmembrane and tetratricopeptide repeat containing 4
mm39_v1_chr19_+_3817396_3817523	0.0100305	ACUGCAU	ENSMUST00000052699.13|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113974.11|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113972.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113973.8|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113977.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113968.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B
mm39_v1_chr1_-_138547403_138547497	0.00612018	ACUGCAU	ENSMUST00000027642.5|Nek7|ENSMUSG00000026393.11|NIMA (never in mitosis gene a)-related expressed kinase 7	ENSMUST00000186017.7|Nek7|ENSMUSG00000026393.11|NIMA (never in mitosis gene a)-related expressed kinase 7
