mm39_v1_chr15_+_38796539_38796539	27.1293	AGCCCUU	ENSMUST00000163313.3|Baalc|ENSMUSG00000022296.11|brain and acute leukemia, cytoplasmic
mm39_v1_chr4_-_87148672_87148714	23.6908	AGCCCUU	ENSMUST00000107157.9|Slc24a2|ENSMUSG00000037996.18|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm39_v1_chr11_-_42073737_42073762	18.0237	AGCCCUU	ENSMUST00000206085.2|Gabra1|ENSMUSG00000010803.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	ENSMUST00000020707.12|Gabra1|ENSMUSG00000010803.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	ENSMUST00000132971.3|Gabra1|ENSMUSG00000010803.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm39_v1_chr14_-_55354392_55354437	15.7833	AGCCCUU	ENSMUST00000022819.13|Jph4|ENSMUSG00000022208.13|junctophilin 4
mm39_v1_chr1_+_152830720_152830804	15.3154	AGCCCUU	ENSMUST00000043313.15|Nmnat2|ENSMUSG00000042751.15|nicotinamide nucleotide adenylyltransferase 2	ENSMUST00000186621.2|Nmnat2|ENSMUSG00000042751.15|nicotinamide nucleotide adenylyltransferase 2
mm39_v1_chr1_-_132470672_132470692	15.036	AGCCCUU	ENSMUST00000086521.11|Cntn2|ENSMUSG00000053024.15|contactin 2
mm39_v1_chrX_+_165021897_165021909	14.5818	AGCCCUU	ENSMUST00000112235.8|Gpm6b|ENSMUSG00000031342.18|glycoprotein m6b
mm39_v1_chr17_+_44114894_44114932	13.4178	AGCCCUU	ENSMUST00000044895.13|Rcan2|ENSMUSG00000039601.17|regulator of calcineurin 2
mm39_v1_chr14_+_111912529_111912556	13.2079	AGCCCUU	ENSMUST00000042767.9|Slitrk5|ENSMUSG00000033214.11|SLIT and NTRK-like family, member 5
mm39_v1_chr7_+_43959637_43959677	13.1708	AGCCCUU	ENSMUST00000107938.8|Shank1|ENSMUSG00000038738.16|SH3 and multiple ankyrin repeat domains 1
mm39_v1_chr17_+_70276068_70276083	12.8458	AGCCCUU	ENSMUST00000133983.8|Dlgap1|ENSMUSG00000003279.18|DLG associated protein 1
mm39_v1_chr2_+_83642910_83642987	12.7915	AGCCCUU	ENSMUST00000051454.4|Fam171b|ENSMUSG00000048388.4|family with sequence similarity 171, member B
mm39_v1_chr8_+_14145848_14145931	12.6414	AGCCCUU	ENSMUST00000152652.8|Dlgap2|ENSMUSG00000047495.16|DLG associated protein 2	ENSMUST00000133298.8|Dlgap2|ENSMUSG00000047495.16|DLG associated protein 2
mm39_v1_chr6_-_37276885_37276919	12.4883	AGCCCUU	ENSMUST00000101532.10|Dgki|ENSMUSG00000038665.16|diacylglycerol kinase, iota
mm39_v1_chr11_-_99134885_99134964	12.386	AGCCCUU	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr8_-_9821021_9821161	12.274	AGCCCUU	ENSMUST00000208933.2|Fam155a|ENSMUSG00000079157.5|family with sequence similarity 155, member A	ENSMUST00000110969.5|Fam155a|ENSMUSG00000079157.5|family with sequence similarity 155, member A
mm39_v1_chr5_+_130477642_130477671	12.26	AGCCCUU	ENSMUST00000111288.4|Caln1|ENSMUSG00000060371.13|calneuron 1
mm39_v1_chr5_+_118307754_118307813	12.1631	AGCCCUU	ENSMUST00000054836.7|Hrk|ENSMUSG00000046607.7|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm39_v1_chr4_+_120711974_120712041	11.7788	AGCCCUU	ENSMUST00000071093.9|Rims3|ENSMUSG00000032890.18|regulating synaptic membrane exocytosis 3
mm39_v1_chr2_-_24653059_24653164	11.7434	AGCCCUU	ENSMUST00000100348.10|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000041342.12|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000114447.8|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000102939.9|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000070864.14|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit
mm39_v1_chr16_-_9812410_9812446	11.7359	AGCCCUU	ENSMUST00000115835.8|Grin2a|ENSMUSG00000059003.13|glutamate receptor, ionotropic, NMDA2A (epsilon 1)
mm39_v1_chr4_+_138181616_138181643	11.5797	AGCCCUU	ENSMUST00000050918.4|Camk2n1|ENSMUSG00000046447.4|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm39_v1_chr4_-_46991842_46991916	10.9471	AGCCCUU	ENSMUST00000107749.4|Gabbr2|ENSMUSG00000039809.11|gamma-aminobutyric acid (GABA) B receptor, 2
mm39_v1_chr3_+_7431717_7431730	10.501	AGCCCUU	ENSMUST00000192468.2|Pkia|ENSMUSG00000027499.13|protein kinase inhibitor, alpha	ENSMUST00000028999.12|Pkia|ENSMUSG00000027499.13|protein kinase inhibitor, alpha
mm39_v1_chrX_+_149981074_149981136	10.454	AGCCCUU	ENSMUST00000184730.8|Wnk3|ENSMUSG00000041245.14|WNK lysine deficient protein kinase 3	ENSMUST00000184392.8|Wnk3|ENSMUSG00000041245.14|WNK lysine deficient protein kinase 3	ENSMUST00000096285.5|Wnk3|ENSMUSG00000041245.14|WNK lysine deficient protein kinase 3
mm39_v1_chr18_-_31580436_31580460	10.3432	AGCCCUU	ENSMUST00000025110.5|Syt4|ENSMUSG00000024261.7|synaptotagmin IV
mm39_v1_chr1_-_154602102_154602132	10.3389	AGCCCUU	ENSMUST00000187541.7|Cacna1e|ENSMUSG00000004110.18|calcium channel, voltage-dependent, R type, alpha 1E subunit
mm39_v1_chr11_+_78213791_78213822	10.2994	AGCCCUU	ENSMUST00000017534.15|Aldoc|ENSMUSG00000017390.16|aldolase C, fructose-bisphosphate
mm39_v1_chr5_-_122917341_122917496	10.1589	AGCCCUU	ENSMUST00000198257.5|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000199599.2|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000196742.2|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000200109.5|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000111668.8|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm39_v1_chr9_-_21963306_21963322	9.9909	AGCCCUU	ENSMUST00000003501.9|Elavl3|ENSMUSG00000003410.9|ELAV like RNA binding protein 3	ENSMUST00000215901.2|Elavl3|ENSMUSG00000003410.9|ELAV like RNA binding protein 3
mm39_v1_chr7_+_123582021_123582092	9.90736	AGCCCUU	ENSMUST00000106437.2|Hs3st4|ENSMUSG00000078591.2|heparan sulfate (glucosamine) 3-O-sulfotransferase 4
mm39_v1_chr5_+_63806451_63806451	9.72174	AGCCCUU	ENSMUST00000159584.3|Nwd2|ENSMUSG00000090061.10|NACHT and WD repeat domain containing 2
mm39_v1_chr6_-_136150076_136150146	9.72141	AGCCCUU	ENSMUST00000053880.13|Grin2b|ENSMUSG00000030209.15|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm39_v1_chr17_-_45860580_45860603	9.57406	AGCCCUU	ENSMUST00000180252.3|Tmem151b|ENSMUSG00000096847.3|transmembrane protein 151B
mm39_v1_chr15_+_101122069_101122114	9.13094	AGCCCUU	ENSMUST00000000543.6|Tamalin|ENSMUSG00000000531.6|trafficking regulator and scaffold protein tamalin
mm39_v1_chr5_-_103247920_103247954	9.04764	AGCCCUU	ENSMUST00000112848.8|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10
mm39_v1_chr9_+_40180726_40180737	8.94454	AGCCCUU	ENSMUST00000171835.9|Scn3b|ENSMUSG00000049281.17|sodium channel, voltage-gated, type III, beta
mm39_v1_chr11_+_104122216_104122279	8.83628	AGCCCUU	ENSMUST00000106992.10|Mapt|ENSMUSG00000018411.18|microtubule-associated protein tau
mm39_v1_chr10_+_107107477_107107557	8.43123	AGCCCUU	ENSMUST00000020057.16|Lin7a|ENSMUSG00000019906.16|lin-7 homolog A (C. elegans)
mm39_v1_chr17_+_24707711_24707849	8.394	AGCCCUU	ENSMUST00000024958.9|Caskin1|ENSMUSG00000033597.10|CASK interacting protein 1	ENSMUST00000234717.2|Caskin1|ENSMUSG00000033597.10|CASK interacting protein 1
mm39_v1_chr15_-_71599664_71599697	8.24328	AGCCCUU	ENSMUST00000022953.10|Fam135b|ENSMUSG00000036800.9|family with sequence similarity 135, member B
mm39_v1_chr18_-_72484126_72484140	8.0358	AGCCCUU	ENSMUST00000114943.11|Dcc|ENSMUSG00000060534.17|deleted in colorectal carcinoma
mm39_v1_chr7_-_81104423_81104512	7.77211	AGCCCUU	ENSMUST00000178892.3|Cpeb1|ENSMUSG00000025586.18|cytoplasmic polyadenylation element binding protein 1	ENSMUST00000098331.10|Cpeb1|ENSMUSG00000025586.18|cytoplasmic polyadenylation element binding protein 1
mm39_v1_chr10_-_5872386_5872405	7.65423	AGCCCUU	ENSMUST00000131996.8|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17	ENSMUST00000064225.14|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17
mm39_v1_chr1_+_134637031_134637056	7.47167	AGCCCUU	ENSMUST00000121990.2|Syt2|ENSMUSG00000026452.16|synaptotagmin II
mm39_v1_chr4_+_129030710_129030792	7.44937	AGCCCUU	ENSMUST00000102600.4|Fndc5|ENSMUSG00000001334.10|fibronectin type III domain containing 5
mm39_v1_chr15_+_4404965_4404994	7.40446	AGCCCUU	ENSMUST00000061925.5|Plcxd3|ENSMUSG00000049148.9|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm39_v1_chr12_+_95658987_95659011	7.37753	AGCCCUU	ENSMUST00000057324.4|Flrt2|ENSMUSG00000047414.7|fibronectin leucine rich transmembrane protein 2
mm39_v1_chr2_+_162785394_162785437	7.10133	AGCCCUU	ENSMUST00000035751.12|L3mbtl1|ENSMUSG00000035576.14|L3MBTL1 histone methyl-lysine binding protein	ENSMUST00000156954.8|L3mbtl1|ENSMUSG00000035576.14|L3MBTL1 histone methyl-lysine binding protein
mm39_v1_chr15_-_78004211_78004232	7.08236	AGCCCUU	ENSMUST00000019290.3|Cacng2|ENSMUSG00000019146.3|calcium channel, voltage-dependent, gamma subunit 2
mm39_v1_chr7_-_57036920_57036972	7.07394	AGCCCUU	ENSMUST00000068911.13|Gabrg3|ENSMUSG00000055026.14|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3
mm39_v1_chr15_+_80171435_80171453	7.0566	AGCCCUU	ENSMUST00000160424.8|Cacna1i|ENSMUSG00000022416.16|calcium channel, voltage-dependent, alpha 1I subunit
mm39_v1_chr13_-_36918424_36918466	7.00149	AGCCCUU	ENSMUST00000037623.15|Nrn1|ENSMUSG00000039114.17|neuritin 1
mm39_v1_chr11_+_89921121_89921184	6.98692	AGCCCUU	ENSMUST00000092788.4|Tmem100|ENSMUSG00000069763.4|transmembrane protein 100
mm39_v1_chr7_+_118311740_118311795	6.93566	AGCCCUU	ENSMUST00000106557.8|Ccp110|ENSMUSG00000033904.17|centriolar coiled coil protein 110
mm39_v1_chr9_-_43027809_43027866	6.90953	AGCCCUU	ENSMUST00000216126.2|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5	ENSMUST00000213544.2|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5	ENSMUST00000061833.6|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5
mm39_v1_chr1_-_22845124_22845203	6.90864	AGCCCUU	ENSMUST00000115273.10|Rims1|ENSMUSG00000041670.20|regulating synaptic membrane exocytosis 1
mm39_v1_chr11_-_118800314_118800398	6.8079	AGCCCUU	ENSMUST00000117731.8|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3	ENSMUST00000106278.9|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3	ENSMUST00000120061.8|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3	ENSMUST00000017576.11|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3
mm39_v1_chr5_+_35435663_35435663	6.77501	AGCCCUU	ENSMUST00000049545.7|Adra2c|ENSMUSG00000045318.7|adrenergic receptor, alpha 2c
mm39_v1_chr10_+_3316057_3316162	6.74276	AGCCCUU	ENSMUST00000043374.7|Ppp1r14c|ENSMUSG00000040653.7|protein phosphatase 1, regulatory inhibitor subunit 14C
mm39_v1_chr8_+_104897074_104897247	6.67792	AGCCCUU	ENSMUST00000164076.3|Bean1|ENSMUSG00000031872.15|brain expressed, associated with Nedd4, 1	ENSMUST00000171018.8|Bean1|ENSMUSG00000031872.15|brain expressed, associated with Nedd4, 1	ENSMUST00000167633.8|Bean1|ENSMUSG00000031872.15|brain expressed, associated with Nedd4, 1	ENSMUST00000093245.13|Bean1|ENSMUSG00000031872.15|brain expressed, associated with Nedd4, 1	ENSMUST00000212979.2|Bean1|ENSMUSG00000031872.15|brain expressed, associated with Nedd4, 1
mm39_v1_chr1_+_166081664_166081722	6.55379	AGCCCUU	ENSMUST00000111416.7|Ildr2|ENSMUSG00000040612.14|immunoglobulin-like domain containing receptor 2
mm39_v1_chr1_-_84912810_84912855	6.49106	AGCCCUU	ENSMUST00000027422.7|Slc16a14|ENSMUSG00000026220.7|solute carrier family 16 (monocarboxylic acid transporters), member 14
mm39_v1_chr13_-_58056089_58056135	6.4831	AGCCCUU	ENSMUST00000185502.7|Spock1|ENSMUSG00000056222.16|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	ENSMUST00000186271.7|Spock1|ENSMUSG00000056222.16|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	ENSMUST00000185905.2|Spock1|ENSMUSG00000056222.16|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	ENSMUST00000187852.7|Spock1|ENSMUSG00000056222.16|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
mm39_v1_chr17_-_56447332_56447385	6.45045	AGCCCUU	ENSMUST00000001256.11|Sema6b|ENSMUSG00000001227.13|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
mm39_v1_chr1_+_125604706_125604751	5.74168	AGCCCUU	ENSMUST00000027581.7|Gpr39|ENSMUSG00000026343.7|G protein-coupled receptor 39
mm39_v1_chr7_+_26958150_26958240	5.66127	AGCCCUU	ENSMUST00000079258.7|Numbl|ENSMUSG00000063160.13|numb-like
mm39_v1_chr2_+_121697398_121697478	5.63253	AGCCCUU	ENSMUST00000110586.10|Golm2|ENSMUSG00000060227.16|golgi membrane protein 2	ENSMUST00000078752.10|Golm2|ENSMUSG00000060227.16|golgi membrane protein 2
mm39_v1_chr18_-_38345010_38345106	5.59587	AGCCCUU	ENSMUST00000159405.3|Pcdh1|ENSMUSG00000051375.16|protocadherin 1	ENSMUST00000160721.8|Pcdh1|ENSMUSG00000051375.16|protocadherin 1
mm39_v1_chr11_+_105480796_105480857	5.48491	AGCCCUU	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr5_+_89034666_89034684	5.41029	AGCCCUU	ENSMUST00000148750.8|Slc4a4|ENSMUSG00000060961.17|solute carrier family 4 (anion exchanger), member 4
mm39_v1_chr9_+_58536386_58536393	5.26875	AGCCCUU	ENSMUST00000176250.2|Nptn|ENSMUSG00000032336.18|neuroplastin
mm39_v1_chr3_+_32871669_32871726	5.24224	AGCCCUU	ENSMUST00000072312.12|Usp13|ENSMUSG00000056900.14|ubiquitin specific peptidase 13 (isopeptidase T-3)	ENSMUST00000108228.8|Usp13|ENSMUSG00000056900.14|ubiquitin specific peptidase 13 (isopeptidase T-3)
mm39_v1_chr13_-_43457626_43457689	5.12182	AGCCCUU	ENSMUST00000055341.7|Gfod1|ENSMUSG00000051335.7|glucose-fructose oxidoreductase domain containing 1
mm39_v1_chr19_-_4993060_4993155	5.10346	AGCCCUU	ENSMUST00000133504.2|Peli3|ENSMUSG00000024901.16|pellino 3	ENSMUST00000133254.2|Peli3|ENSMUSG00000024901.16|pellino 3	ENSMUST00000120475.8|Peli3|ENSMUSG00000024901.16|pellino 3	ENSMUST00000025834.15|Peli3|ENSMUSG00000024901.16|pellino 3
mm39_v1_chr2_-_167032068_167032093	4.88891	AGCCCUU	ENSMUST00000059826.10|Kcnb1|ENSMUSG00000050556.10|potassium voltage gated channel, Shab-related subfamily, member 1
mm39_v1_chr18_-_62044871_62044925	4.79832	AGCCCUU	ENSMUST00000166783.3|Ablim3|ENSMUSG00000032735.16|actin binding LIM protein family, member 3	ENSMUST00000049378.15|Ablim3|ENSMUSG00000032735.16|actin binding LIM protein family, member 3
mm39_v1_chr2_-_33777874_33777958	4.73888	AGCCCUU	ENSMUST00000041555.10|Mvb12b|ENSMUSG00000038740.10|multivesicular body subunit 12B
mm39_v1_chr4_+_17853452_17853474	4.61085	AGCCCUU	ENSMUST00000029881.10|Mmp16|ENSMUSG00000028226.16|matrix metallopeptidase 16
mm39_v1_chr12_+_109418759_109418775	4.56746	AGCCCUU	ENSMUST00000056110.15|Dlk1|ENSMUSG00000040856.18|delta like non-canonical Notch ligand 1
mm39_v1_chr7_-_141925947_141926030	4.44483	AGCCCUU	ENSMUST00000084412.6|Ifitm10|ENSMUSG00000045777.15|interferon induced transmembrane protein 10
mm39_v1_chr9_-_108067552_108067617	4.42056	AGCCCUU	ENSMUST00000035208.14|Bsn|ENSMUSG00000032589.15|bassoon
mm39_v1_chr14_+_119092107_119092144	4.31194	AGCCCUU	ENSMUST00000100314.4|Cldn10|ENSMUSG00000022132.16|claudin 10
mm39_v1_chr3_-_56091096_56091122	4.2622	AGCCCUU	ENSMUST00000029374.8|Nbea|ENSMUSG00000027799.13|neurobeachin
mm39_v1_chr8_-_74080101_74080180	4.02955	AGCCCUU	ENSMUST00000119826.7|Large1|ENSMUSG00000004383.19|LARGE xylosyl- and glucuronyltransferase 1	ENSMUST00000212459.2|Large1|ENSMUSG00000004383.19|LARGE xylosyl- and glucuronyltransferase 1
mm39_v1_chr11_-_87878301_87878364	4.02949	AGCCCUU	ENSMUST00000020775.9|Dynll2|ENSMUSG00000020483.15|dynein light chain LC8-type 2
mm39_v1_chr1_-_170042947_170042989	3.78032	AGCCCUU	ENSMUST00000027979.14|Uhmk1|ENSMUSG00000026667.15|U2AF homology motif (UHM) kinase 1	ENSMUST00000123399.2|Uhmk1|ENSMUSG00000026667.15|U2AF homology motif (UHM) kinase 1
mm39_v1_chr4_-_35845204_35845204	3.70384	AGCCCUU	ENSMUST00000164772.8|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2	ENSMUST00000065173.9|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2
mm39_v1_chr11_+_30835358_30835430	3.6755	AGCCCUU	ENSMUST00000109430.2|Gpr75|ENSMUSG00000043999.7|G protein-coupled receptor 75	ENSMUST00000203878.3|Asb3|ENSMUSG00000020305.14|ankyrin repeat and SOCS box-containing 3
mm39_v1_chr2_-_52566583_52566601	3.64508	AGCCCUU	ENSMUST00000178799.8|Cacnb4|ENSMUSG00000017412.16|calcium channel, voltage-dependent, beta 4 subunit
mm39_v1_chr5_+_122988111_122988228	3.64387	AGCCCUU	ENSMUST00000031434.8|Rnf34|ENSMUSG00000029474.8|ring finger protein 34	ENSMUST00000198602.2|Rnf34|ENSMUSG00000029474.8|ring finger protein 34
mm39_v1_chrX_+_95757092_95757103	3.53628	AGCCCUU	ENSMUST00000033554.5|Gpr165|ENSMUSG00000031210.11|G protein-coupled receptor 165
mm39_v1_chr17_+_86475205_86475223	3.50721	AGCCCUU	ENSMUST00000097275.9|Prkce|ENSMUSG00000045038.15|protein kinase C, epsilon
mm39_v1_chr15_-_31367668_31367727	3.37595	AGCCCUU	ENSMUST00000110410.10|Ankrd33b|ENSMUSG00000022237.18|ankyrin repeat domain 33B	ENSMUST00000076942.5|Ankrd33b|ENSMUSG00000022237.18|ankyrin repeat domain 33B
mm39_v1_chr14_-_33923583_33923621	3.29713	AGCCCUU	ENSMUST00000226613.2|Gprin2|ENSMUSG00000071531.4|G protein regulated inducer of neurite outgrowth 2	ENSMUST00000096019.4|Gprin2|ENSMUSG00000071531.4|G protein regulated inducer of neurite outgrowth 2	ENSMUST00000226511.2|Gprin2|ENSMUSG00000071531.4|G protein regulated inducer of neurite outgrowth 2
mm39_v1_chr14_-_47059694_47059743	3.17989	AGCCCUU	ENSMUST00000111817.8|Gmfb|ENSMUSG00000062014.14|glia maturation factor, beta	ENSMUST00000079314.12|Gmfb|ENSMUSG00000062014.14|glia maturation factor, beta
mm39_v1_chrX_+_100892981_100892998	3.08439	AGCCCUU	ENSMUST00000124279.6|Nhsl2|ENSMUSG00000079481.12|NHS-like 2	ENSMUST00000101339.8|Nhsl2|ENSMUSG00000079481.12|NHS-like 2
mm39_v1_chr3_-_8732316_8732353	3.04803	AGCCCUU	ENSMUST00000042412.5|Hey1|ENSMUSG00000040289.9|hairy/enhancer-of-split related with YRPW motif 1
mm39_v1_chr7_-_45516553_45516553	3.04171	AGCCCUU	ENSMUST00000002848.10|Grin2d|ENSMUSG00000002771.13|glutamate receptor, ionotropic, NMDA2D (epsilon 4)
mm39_v1_chr2_+_179684288_179684355	2.86162	AGCCCUU	ENSMUST00000041126.9|Ss18l1|ENSMUSG00000039086.10|SS18, nBAF chromatin remodeling complex subunit like 1
mm39_v1_chr13_-_41373870_41373889	2.85189	AGCCCUU	ENSMUST00000021793.15|Elovl2|ENSMUSG00000021364.17|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
mm39_v1_chr7_+_125871761_125871791	2.84495	AGCCCUU	ENSMUST00000056028.11|Sbk1|ENSMUSG00000042978.12|SH3-binding kinase 1
mm39_v1_chr15_-_79718423_79718447	2.78425	AGCCCUU	ENSMUST00000109623.8|Cbx6|ENSMUSG00000089715.13|chromobox 6	ENSMUST00000023060.13|Npcd|ENSMUSG00000089837.10|neuronal pentraxin chromo domain	ENSMUST00000089299.6|Npcd|ENSMUSG00000089837.10|neuronal pentraxin chromo domain	ENSMUST00000109625.8|Cbx6|ENSMUSG00000089715.13|chromobox 6
mm39_v1_chr12_+_64964674_64964776	2.76784	AGCCCUU	ENSMUST00000058135.6|Gm527|ENSMUSG00000047227.6|predicted gene 527	ENSMUST00000220993.2|Gm527|ENSMUSG00000047227.6|predicted gene 527
mm39_v1_chr1_-_131066004_131066077	2.74917	AGCCCUU	ENSMUST00000016670.9|Dyrk3|ENSMUSG00000016526.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3
mm39_v1_chr7_+_48896560_48896592	2.68617	AGCCCUU	ENSMUST00000184945.8|Nav2|ENSMUSG00000052512.18|neuron navigator 2
mm39_v1_chr16_-_37205277_37205293	2.63222	AGCCCUU	ENSMUST00000114787.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114782.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114775.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like
mm39_v1_chr14_+_62793175_62793260	2.61848	AGCCCUU	ENSMUST00000039064.8|Fam124a|ENSMUSG00000035184.16|family with sequence similarity 124, member A
mm39_v1_chr8_+_111760521_111760565	2.60772	AGCCCUU	ENSMUST00000034441.8|Aars|ENSMUSG00000031960.15|alanyl-tRNA synthetase
mm39_v1_chr9_+_45749869_45749892	2.59258	AGCCCUU	ENSMUST00000078111.11|Bace1|ENSMUSG00000032086.13|beta-site APP cleaving enzyme 1	ENSMUST00000034591.11|Bace1|ENSMUSG00000032086.13|beta-site APP cleaving enzyme 1
mm39_v1_chr4_+_42949814_42949924	2.57321	AGCCCUU	ENSMUST00000037872.10|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5	ENSMUST00000098112.9|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5
mm39_v1_chr10_-_33972503_33972549	2.56583	AGCCCUU	ENSMUST00000069125.8|Calhm5|ENSMUSG00000049872.9|calcium homeostasis modulator family member 5
mm39_v1_chr7_+_106969950_106970053	2.49388	AGCCCUU	ENSMUST00000073459.12|Syt9|ENSMUSG00000062542.12|synaptotagmin IX
mm39_v1_chr5_-_73805063_73805133	2.47203	AGCCCUU	ENSMUST00000081170.9|Sgcb|ENSMUSG00000029156.12|sarcoglycan, beta (dystrophin-associated glycoprotein)
mm39_v1_chr1_+_180396478_180396525	2.45055	AGCCCUU	ENSMUST00000027777.12|Parp1|ENSMUSG00000026496.12|poly (ADP-ribose) polymerase family, member 1
mm39_v1_chr6_-_142910094_142910178	2.43619	AGCCCUU	ENSMUST00000032421.4|St8sia1|ENSMUSG00000030283.8|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
mm39_v1_chr7_+_109721230_109721342	2.4171	AGCCCUU	ENSMUST00000033326.10|Wee1|ENSMUSG00000031016.10|WEE 1 homolog 1 (S. pombe)
mm39_v1_chr11_-_65679101_65679147	2.4109	AGCCCUU	ENSMUST00000152096.8|Map2k4|ENSMUSG00000033352.12|mitogen-activated protein kinase kinase 4	ENSMUST00000046963.10|Map2k4|ENSMUSG00000033352.12|mitogen-activated protein kinase kinase 4
mm39_v1_chr4_-_45826923_45826962	2.28829	AGCCCUU	ENSMUST00000044297.7|Igfbpl1|ENSMUSG00000035551.7|insulin-like growth factor binding protein-like 1
mm39_v1_chr2_-_37537224_37537297	2.28083	AGCCCUU	ENSMUST00000028279.10|Strbp|ENSMUSG00000026915.17|spermatid perinuclear RNA binding protein
mm39_v1_chr10_+_88215079_88215164	2.22344	AGCCCUU	ENSMUST00000130301.8|Gnptab|ENSMUSG00000035311.17|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	ENSMUST00000020251.10|Gnptab|ENSMUSG00000035311.17|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm39_v1_chr19_-_4319170_4319228	2.22051	AGCCCUU	ENSMUST00000037992.16|Ssh3|ENSMUSG00000034616.18|slingshot protein phosphatase 3	ENSMUST00000113852.6|Ssh3|ENSMUSG00000034616.18|slingshot protein phosphatase 3	ENSMUST00000236794.2|Ssh3|ENSMUSG00000034616.18|slingshot protein phosphatase 3
mm39_v1_chr2_-_6889783_6889807	2.18591	AGCCCUU	ENSMUST00000170438.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114924.10|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114934.11|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr10_-_94780695_94780724	2.15442	AGCCCUU	ENSMUST00000099337.5|Plxnc1|ENSMUSG00000074785.6|plexin C1
mm39_v1_chr11_+_3280401_3280541	2.12511	AGCCCUU	ENSMUST00000045153.11|Pik3ip1|ENSMUSG00000034614.15|phosphoinositide-3-kinase interacting protein 1
mm39_v1_chr4_+_136013372_136013425	2.11712	AGCCCUU	ENSMUST00000069195.5|Zfp46|ENSMUSG00000051351.15|zinc finger protein 46	ENSMUST00000130658.2|Zfp46|ENSMUSG00000051351.15|zinc finger protein 46
mm39_v1_chr4_+_73931679_73931931	2.10938	AGCCCUU	ENSMUST00000098006.9|Frmd3|ENSMUSG00000049122.18|FERM domain containing 3	ENSMUST00000084474.6|Frmd3|ENSMUSG00000049122.18|FERM domain containing 3
mm39_v1_chr1_+_155034452_155034522	2.10791	AGCCCUU	ENSMUST00000027743.13|Stx6|ENSMUSG00000026470.15|syntaxin 6	ENSMUST00000195302.6|Stx6|ENSMUSG00000026470.15|syntaxin 6
mm39_v1_chr15_+_97682210_97682370	2.10314	AGCCCUU	ENSMUST00000117892.2|Slc48a1|ENSMUSG00000081534.4|solute carrier family 48 (heme transporter), member 1	ENSMUST00000229084.2|Slc48a1|ENSMUSG00000081534.4|solute carrier family 48 (heme transporter), member 1
mm39_v1_chr2_+_156562989_156563004	2.0956	AGCCCUU	ENSMUST00000000094.14|Dlgap4|ENSMUSG00000061689.16|DLG associated protein 4
mm39_v1_chr18_-_75830595_75830653	2.0787	AGCCCUU	ENSMUST00000165559.3|Ctif|ENSMUSG00000052928.10|CBP80/20-dependent translation initiation factor
mm39_v1_chrX_-_23231245_23231329	2.01273	AGCCCUU	ENSMUST00000115313.8|Klhl13|ENSMUSG00000036782.14|kelch-like 13
mm39_v1_chr7_+_30193047_30193205	2.00926	AGCCCUU	ENSMUST00000058280.13|Prodh2|ENSMUSG00000036892.13|proline dehydrogenase (oxidase) 2	ENSMUST00000133318.8|Prodh2|ENSMUSG00000036892.13|proline dehydrogenase (oxidase) 2	ENSMUST00000142575.8|Prodh2|ENSMUSG00000036892.13|proline dehydrogenase (oxidase) 2	ENSMUST00000131040.2|Prodh2|ENSMUSG00000036892.13|proline dehydrogenase (oxidase) 2
mm39_v1_chr1_-_157240138_157240191	1.96026	AGCCCUU	ENSMUST00000078308.13|Rasal2|ENSMUSG00000070565.12|RAS protein activator like 2
mm39_v1_chr5_+_101912939_101913014	1.84414	AGCCCUU	ENSMUST00000031273.9|Cds1|ENSMUSG00000029330.9|CDP-diacylglycerol synthase 1
mm39_v1_chr1_+_92759324_92759367	1.84143	AGCCCUU	ENSMUST00000045970.8|Gpc1|ENSMUSG00000034220.8|glypican 1
mm39_v1_chr17_-_66079681_66079747	1.83589	AGCCCUU	ENSMUST00000070673.9|Rab31|ENSMUSG00000056515.10|RAB31, member RAS oncogene family
mm39_v1_chr4_-_57301791_57301837	1.67164	AGCCCUU	ENSMUST00000075637.11|Ptpn3|ENSMUSG00000038764.15|protein tyrosine phosphatase, non-receptor type 3
mm39_v1_chr19_+_55304703_55304799	1.6501	AGCCCUU	ENSMUST00000225529.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000223690.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000095950.3|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A
mm39_v1_chr4_+_109137462_109137513	1.64999	AGCCCUU	ENSMUST00000102729.10|Eps15|ENSMUSG00000028552.14|epidermal growth factor receptor pathway substrate 15
mm39_v1_chr2_+_158251761_158251783	1.63821	AGCCCUU	ENSMUST00000109486.9|Ralgapb|ENSMUSG00000027652.16|Ral GTPase activating protein, beta subunit (non-catalytic)	ENSMUST00000046274.12|Ralgapb|ENSMUSG00000027652.16|Ral GTPase activating protein, beta subunit (non-catalytic)
mm39_v1_chr9_-_117081518_117081557	1.59444	AGCCCUU	ENSMUST00000111773.10|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein	ENSMUST00000068962.14|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein	ENSMUST00000044901.14|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein
mm39_v1_chrX_-_103714653_103714677	1.55054	AGCCCUU	ENSMUST00000042070.6|Zdhhc15|ENSMUSG00000033906.6|zinc finger, DHHC domain containing 15
mm39_v1_chr9_-_71393175_71393257	1.52661	AGCCCUU	ENSMUST00000233263.2|Polr2m|ENSMUSG00000032199.14|polymerase (RNA) II (DNA directed) polypeptide M	ENSMUST00000034720.12|Polr2m|ENSMUSG00000032199.14|polymerase (RNA) II (DNA directed) polypeptide M
mm39_v1_chr18_+_44960813_44960813	1.49866	AGCCCUU	ENSMUST00000037763.11|Ythdc2|ENSMUSG00000034653.12|YTH domain containing 2
mm39_v1_chrX_+_74557905_74557946	1.48451	AGCCCUU	ENSMUST00000114070.10|Vbp1|ENSMUSG00000031197.12|von Hippel-Lindau binding protein 1	ENSMUST00000033540.6|Vbp1|ENSMUSG00000031197.12|von Hippel-Lindau binding protein 1
mm39_v1_chr5_+_115567644_115567673	1.45254	AGCCCUU	ENSMUST00000150779.8|Msi1|ENSMUSG00000054256.12|musashi RNA-binding protein 1
mm39_v1_chr6_-_32565127_32565148	1.42713	AGCCCUU	ENSMUST00000115096.4|Plxna4|ENSMUSG00000029765.13|plexin A4
mm39_v1_chr1_-_192812509_192812580	1.37174	AGCCCUU	ENSMUST00000085555.7|Utp25|ENSMUSG00000016181.10|UTP25 small subunit processome component
mm39_v1_chr11_+_80191692_80191738	1.33493	AGCCCUU	ENSMUST00000017836.8|Rhbdl3|ENSMUSG00000017692.9|rhomboid like 3
mm39_v1_chr12_+_102724223_102724269	1.28658	AGCCCUU	ENSMUST00000046404.8|Ubr7|ENSMUSG00000041712.8|ubiquitin protein ligase E3 component n-recognin 7 (putative)
mm39_v1_chr3_+_125197722_125197780	1.20645	AGCCCUU	ENSMUST00000173932.8|Ndst4|ENSMUSG00000027971.17|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm39_v1_chr15_+_99615396_99615475	1.20185	AGCCCUU	ENSMUST00000023760.13|Gpd1|ENSMUSG00000023019.13|glycerol-3-phosphate dehydrogenase 1 (soluble)	ENSMUST00000162194.2|Gpd1|ENSMUSG00000023019.13|glycerol-3-phosphate dehydrogenase 1 (soluble)
mm39_v1_chr6_+_36364990_36365019	1.17502	AGCCCUU	ENSMUST00000172278.8|Chrm2|ENSMUSG00000045613.10|cholinergic receptor, muscarinic 2, cardiac
mm39_v1_chr1_-_136273811_136273884	1.15893	AGCCCUU	ENSMUST00000048309.12|Camsap2|ENSMUSG00000041570.15|calmodulin regulated spectrin-associated protein family, member 2
mm39_v1_chr5_+_67417908_67418054	1.14371	AGCCCUU	ENSMUST00000037918.12|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33	ENSMUST00000162543.8|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33	ENSMUST00000161233.8|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33	ENSMUST00000160352.8|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33
mm39_v1_chr6_+_115830431_115830596	1.14286	AGCCCUU	ENSMUST00000112925.8|Ift122|ENSMUSG00000030323.14|intraflagellar transport 122	ENSMUST00000038234.13|Ift122|ENSMUSG00000030323.14|intraflagellar transport 122	ENSMUST00000112923.7|Ift122|ENSMUSG00000030323.14|intraflagellar transport 122
mm39_v1_chr13_+_120151982_120152007	1.10043	AGCCCUU	ENSMUST00000179869.3|Hmgcs1|ENSMUSG00000093930.3|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	ENSMUST00000224188.2|Hmgcs1|ENSMUSG00000093930.3|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1
mm39_v1_chr19_-_7319157_7319195	1.09389	AGCCCUU	ENSMUST00000164205.8|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000165286.8|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000168324.2|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000032557.15|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2
mm39_v1_chr16_+_72460029_72460077	1.08299	AGCCCUU	ENSMUST00000023600.8|Robo1|ENSMUSG00000022883.12|roundabout guidance receptor 1
mm39_v1_chr10_-_110845860_110845927	1.03754	AGCCCUU	ENSMUST00000041723.15|Zdhhc17|ENSMUSG00000035798.15|zinc finger, DHHC domain containing 17
mm39_v1_chr2_+_157266175_157266243	1.02011	AGCCCUU	ENSMUST00000029175.14|Src|ENSMUSG00000027646.16|Rous sarcoma oncogene	ENSMUST00000092576.11|Src|ENSMUSG00000027646.16|Rous sarcoma oncogene
mm39_v1_chr9_-_96634874_96634924	1.01989	AGCCCUU	ENSMUST00000152594.8|Zbtb38|ENSMUSG00000040433.17|zinc finger and BTB domain containing 38
mm39_v1_chr6_+_113355076_113355154	0.99854	AGCCCUU	ENSMUST00000156898.5|Arpc4|ENSMUSG00000079426.14|actin related protein 2/3 complex, subunit 4	ENSMUST00000203578.3|Arpc4|ENSMUSG00000079426.14|actin related protein 2/3 complex, subunit 4	ENSMUST00000171058.8|Arpc4|ENSMUSG00000079426.14|actin related protein 2/3 complex, subunit 4
mm39_v1_chr2_+_20742115_20742152	0.991786	AGCCCUU	ENSMUST00000114606.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4	ENSMUST00000114608.3|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr11_-_115918784_115918826	0.982869	AGCCCUU	ENSMUST00000106454.8|H3f3b|ENSMUSG00000016559.15|H3.3 histone B
mm39_v1_chr18_-_38734389_38734468	0.944027	AGCCCUU	ENSMUST00000025295.8|Spry4|ENSMUSG00000024427.8|sprouty RTK signaling antagonist 4
mm39_v1_chr1_+_152275575_152275643	0.918536	AGCCCUU	ENSMUST00000044311.9|Colgalt2|ENSMUSG00000032649.15|collagen beta(1-O)galactosyltransferase 2
mm39_v1_chr2_-_25982160_25982189	0.907544	AGCCCUU	ENSMUST00000114159.9|Nacc2|ENSMUSG00000026932.15|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm39_v1_chr7_-_118183892_118183965	0.900905	AGCCCUU	ENSMUST00000044195.6|Tmc7|ENSMUSG00000042246.6|transmembrane channel-like gene family 7
mm39_v1_chr7_-_27990555_27990611	0.879725	AGCCCUU	ENSMUST00000056589.15|Selenov|ENSMUSG00000046750.19|selenoprotein V
mm39_v1_chr1_+_184936306_184936383	0.876664	AGCCCUU	ENSMUST00000194740.6|Rab3gap2|ENSMUSG00000039318.13|RAB3 GTPase activating protein subunit 2	ENSMUST00000069652.8|Rab3gap2|ENSMUSG00000039318.13|RAB3 GTPase activating protein subunit 2
mm39_v1_chr13_-_30170031_30170048	0.875759	AGCCCUU	ENSMUST00000102948.11|E2f3|ENSMUSG00000016477.19|E2F transcription factor 3
mm39_v1_chr2_-_124965537_124965581	0.875575	AGCCCUU	ENSMUST00000142718.8|Myef2|ENSMUSG00000027201.17|myelin basic protein expression factor 2, repressor	ENSMUST00000152367.8|Myef2|ENSMUSG00000027201.17|myelin basic protein expression factor 2, repressor	ENSMUST00000067780.10|Myef2|ENSMUSG00000027201.17|myelin basic protein expression factor 2, repressor	ENSMUST00000147105.8|Myef2|ENSMUSG00000027201.17|myelin basic protein expression factor 2, repressor
mm39_v1_chr11_-_85030761_85030864	0.86893	AGCCCUU	ENSMUST00000108075.9|Usp32|ENSMUSG00000000804.15|ubiquitin specific peptidase 32
mm39_v1_chr7_-_12552764_12552801	0.837531	AGCCCUU	ENSMUST00000108546.2|Zfp329|ENSMUSG00000057894.11|zinc finger protein 329	ENSMUST00000072222.8|Zfp329|ENSMUSG00000057894.11|zinc finger protein 329
mm39_v1_chr5_-_149559667_149559678	0.823962	AGCCCUU	ENSMUST00000074846.14|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1
mm39_v1_chr2_+_163916042_163916140	0.823929	AGCCCUU	ENSMUST00000018353.14|Stk4|ENSMUSG00000018209.16|serine/threonine kinase 4
mm39_v1_chr9_-_114762986_114763067	0.808263	AGCCCUU	ENSMUST00000146623.8|Gpd1l|ENSMUSG00000050627.14|glycerol-3-phosphate dehydrogenase 1-like
mm39_v1_chr9_-_63665216_63665276	0.805718	AGCCCUU	ENSMUST00000034973.10|Smad3|ENSMUSG00000032402.13|SMAD family member 3
mm39_v1_chr16_+_21828223_21828275	0.796979	AGCCCUU	ENSMUST00000023561.8|Senp2|ENSMUSG00000022855.10|SUMO/sentrin specific peptidase 2
mm39_v1_chr1_+_191449946_191450017	0.756373	AGCCCUU	ENSMUST00000133076.7|Lpgat1|ENSMUSG00000026623.17|lysophosphatidylglycerol acyltransferase 1	ENSMUST00000110855.8|Lpgat1|ENSMUSG00000026623.17|lysophosphatidylglycerol acyltransferase 1
mm39_v1_chr11_+_110289941_110289982	0.740622	AGCCCUU	ENSMUST00000020949.12|Map2k6|ENSMUSG00000020623.12|mitogen-activated protein kinase kinase 6	ENSMUST00000100260.2|Map2k6|ENSMUSG00000020623.12|mitogen-activated protein kinase kinase 6
mm39_v1_chr11_+_5905693_5905822	0.739547	AGCCCUU	ENSMUST00000002818.9|Ykt6|ENSMUSG00000002741.10|YKT6 v-SNARE homolog (S. cerevisiae)
mm39_v1_chr14_+_20724366_20724376	0.730164	AGCCCUU	ENSMUST00000048657.10|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)
mm39_v1_chr1_+_59802543_59802559	0.669474	AGCCCUU	ENSMUST00000087435.7|Bmpr2|ENSMUSG00000067336.7|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm39_v1_chr4_+_105014536_105014552	0.661549	AGCCCUU	ENSMUST00000064139.8|Plpp3|ENSMUSG00000028517.9|phospholipid phosphatase 3
mm39_v1_chr2_+_52747855_52747880	0.650345	AGCCCUU	ENSMUST00000155586.9|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000090952.11|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000127122.9|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000049483.14|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000050719.13|Fmnl2|ENSMUSG00000036053.18|formin-like 2
mm39_v1_chr7_+_63937413_63937424	0.640297	AGCCCUU	ENSMUST00000032736.11|Mtmr10|ENSMUSG00000030522.15|myotubularin related protein 10
mm39_v1_chr11_-_106107132_106107189	0.635373	AGCCCUU	ENSMUST00000002043.10|Ccdc47|ENSMUSG00000078622.9|coiled-coil domain containing 47
mm39_v1_chr14_-_30075424_30075492	0.584825	AGCCCUU	ENSMUST00000224198.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000238675.2|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000112249.10|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000224785.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm39_v1_chr12_-_65010124_65010159	0.572294	AGCCCUU	ENSMUST00000021331.9|Klhl28|ENSMUSG00000020948.10|kelch-like 28
mm39_v1_chr4_+_21848039_21848077	0.557689	AGCCCUU	ENSMUST00000098238.9|Pnisr|ENSMUSG00000028248.16|PNN interacting serine/arginine-rich	ENSMUST00000108229.2|Pnisr|ENSMUSG00000028248.16|PNN interacting serine/arginine-rich
mm39_v1_chr4_+_148225139_148225222	0.555011	AGCCCUU	ENSMUST00000140049.8|Mad2l2|ENSMUSG00000029003.12|MAD2 mitotic arrest deficient-like 2	ENSMUST00000105707.2|Mad2l2|ENSMUSG00000029003.12|MAD2 mitotic arrest deficient-like 2
mm39_v1_chr1_+_171156568_171156713	0.469148	AGCCCUU	ENSMUST00000111300.8|Dedd|ENSMUSG00000013973.13|death effector domain-containing
mm39_v1_chr2_-_73143045_73143068	0.387995	AGCCCUU	ENSMUST00000058615.10|Cir1|ENSMUSG00000041777.13|corepressor interacting with RBPJ, 1
mm39_v1_chr17_+_29768757_29768773	0.361864	AGCCCUU	ENSMUST00000048677.9|Tbc1d22b|ENSMUSG00000042203.9|TBC1 domain family, member 22B	ENSMUST00000150388.3|Gm28052|ENSMUSG00000099329.3|predicted gene, 28052
mm39_v1_chr11_-_5331734_5331745	0.285513	AGCCCUU	ENSMUST00000172492.8|Znrf3|ENSMUSG00000041961.15|zinc and ring finger 3
mm39_v1_chr1_+_64571942_64572013	0.187436	AGCCCUU	ENSMUST00000171164.8|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000187811.7|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000049932.12|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000087366.11|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1
mm39_v1_chr4_-_62278673_62278749	0.155662	AGCCCUU	ENSMUST00000084527.10|Fkbp15|ENSMUSG00000066151.13|FK506 binding protein 15	ENSMUST00000098033.10|Fkbp15|ENSMUSG00000066151.13|FK506 binding protein 15
mm39_v1_chr1_+_191058109_191058181	0.125971	AGCCCUU	ENSMUST00000027940.6|Pacc1|ENSMUSG00000026627.8|proton activated chloride channel 1
mm39_v1_chr18_+_44513547_44513644	0.0565679	AGCCCUU	ENSMUST00000202306.2|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2	ENSMUST00000025350.10|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2
mm39_v1_chr2_-_25126701_25126799	0.050816	AGCCCUU	ENSMUST00000205192.2|Rnf224|ENSMUSG00000089953.4|ring finger protein 224	ENSMUST00000091318.5|Rnf224|ENSMUSG00000089953.4|ring finger protein 224
mm39_v1_chr1_+_65225834_65225881	0.0443854	AGCCCUU	ENSMUST00000081154.14|Pikfyve|ENSMUSG00000025949.17|phosphoinositide kinase, FYVE type zinc finger containing
mm39_v1_chr15_-_31531122_31531215	0.0422425	AGCCCUU	ENSMUST00000090227.6|Marchf6|ENSMUSG00000039100.11|membrane associated ring-CH-type finger 6
mm39_v1_chr2_+_26899935_26900094	0.0191506	AGCCCUU	ENSMUST00000114005.9|Cacfd1|ENSMUSG00000015488.15|calcium channel flower domain containing 1	ENSMUST00000114004.8|Cacfd1|ENSMUSG00000015488.15|calcium channel flower domain containing 1	ENSMUST00000114006.8|Cacfd1|ENSMUSG00000015488.15|calcium channel flower domain containing 1	ENSMUST00000114007.8|Cacfd1|ENSMUSG00000015488.15|calcium channel flower domain containing 1	ENSMUST00000133807.2|Cacfd1|ENSMUSG00000015488.15|calcium channel flower domain containing 1
mm39_v1_chr11_-_98084086_98084132	0.0165623	AGCCCUU	ENSMUST00000092735.12|Med1|ENSMUSG00000018160.16|mediator complex subunit 1	ENSMUST00000107545.9|Med1|ENSMUSG00000018160.16|mediator complex subunit 1
