mm39_v1_chr5_+_64960705_64960731	6.13439	AGCUUAU	ENSMUST00000165536.8|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr2_-_136958544_136958564	5.49693	AGCUUAU	ENSMUST00000028735.8|Jag1|ENSMUSG00000027276.8|jagged 1
mm39_v1_chr13_+_56757389_56757411	5.42879	AGCUUAU	ENSMUST00000045173.10|Tgfbi|ENSMUSG00000035493.11|transforming growth factor, beta induced
mm39_v1_chr3_-_131138541_131138589	4.37839	AGCUUAU	ENSMUST00000090246.5|Sgms2|ENSMUSG00000050931.8|sphingomyelin synthase 2	ENSMUST00000126569.2|Sgms2|ENSMUSG00000050931.8|sphingomyelin synthase 2
mm39_v1_chr13_-_111945499_111945552	4.16844	AGCUUAU	ENSMUST00000109267.9|Map3k1|ENSMUSG00000021754.18|mitogen-activated protein kinase kinase kinase 1
mm39_v1_chr11_+_60822859_60822921	3.94677	AGCUUAU	ENSMUST00000019076.10|Map2k3|ENSMUSG00000018932.10|mitogen-activated protein kinase kinase 3
mm39_v1_chr4_-_3938352_3938401	3.88407	AGCUUAU	ENSMUST00000003369.10|Plag1|ENSMUSG00000003282.10|pleiomorphic adenoma gene 1
mm39_v1_chr11_+_85723377_85723377	3.83639	AGCUUAU	ENSMUST00000000095.7|Tbx2|ENSMUSG00000000093.7|T-box 2
mm39_v1_chr15_+_85619958_85620010	3.40271	AGCUUAU	ENSMUST00000109422.8|Ppara|ENSMUSG00000022383.14|peroxisome proliferator activated receptor alpha
mm39_v1_chr16_+_4412546_4412599	3.38225	AGCUUAU	ENSMUST00000014447.13|Glis2|ENSMUSG00000014303.14|GLIS family zinc finger 2
mm39_v1_chr15_-_73056713_73056822	3.30819	AGCUUAU	ENSMUST00000044113.12|Ago2|ENSMUSG00000036698.12|argonaute RISC catalytic subunit 2
mm39_v1_chr6_-_14755249_14755285	3.20051	AGCUUAU	ENSMUST00000045096.6|Ppp1r3a|ENSMUSG00000042717.6|protein phosphatase 1, regulatory subunit 3A
mm39_v1_chr4_+_8691303_8691381	2.91299	AGCUUAU	ENSMUST00000051558.10|Chd7|ENSMUSG00000041235.13|chromodomain helicase DNA binding protein 7
mm39_v1_chr6_-_39183712_39183769	2.90693	AGCUUAU	ENSMUST00000002305.9|Kdm7a|ENSMUSG00000042599.9|lysine (K)-specific demethylase 7A
mm39_v1_chr18_+_75500600_75500632	2.87177	AGCUUAU	ENSMUST00000026999.10|Smad7|ENSMUSG00000025880.12|SMAD family member 7
mm39_v1_chr13_-_101904662_101904725	2.86317	AGCUUAU	ENSMUST00000055518.13|Pik3r1|ENSMUSG00000041417.16|phosphoinositide-3-kinase regulatory subunit 1
mm39_v1_chr3_+_60408600_60408663	2.63401	AGCUUAU	ENSMUST00000099087.8|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr4_+_97665843_97665870	2.6294	AGCUUAU	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr19_+_6326755_6326823	2.56549	AGCUUAU	ENSMUST00000025684.4|Ehd1|ENSMUSG00000024772.10|EH-domain containing 1
mm39_v1_chr18_+_84106188_84106305	2.54641	AGCUUAU	ENSMUST00000060223.4|Zadh2|ENSMUSG00000049090.4|zinc binding alcohol dehydrogenase, domain containing 2
mm39_v1_chr5_+_52521133_52521322	2.49809	AGCUUAU	ENSMUST00000101208.6|Sod3|ENSMUSG00000072941.6|superoxide dismutase 3, extracellular
mm39_v1_chr11_+_21041291_21041308	2.45904	AGCUUAU	ENSMUST00000093290.12|Peli1|ENSMUSG00000020134.14|pellino 1
mm39_v1_chr9_-_8004586_8004632	2.43478	AGCUUAU	ENSMUST00000086580.12|Yap1|ENSMUSG00000053110.14|yes-associated protein 1	ENSMUST00000065353.13|Yap1|ENSMUSG00000053110.14|yes-associated protein 1
mm39_v1_chr1_-_74163575_74163626	2.42904	AGCUUAU	ENSMUST00000169786.8|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000212888.2|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000191104.7|Tns1|ENSMUSG00000055322.17|tensin 1
mm39_v1_chr2_-_104324745_104324809	2.30585	AGCUUAU	ENSMUST00000028600.14|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr11_+_60308077_60308127	2.29051	AGCUUAU	ENSMUST00000070681.7|Gid4|ENSMUSG00000018415.15|GID complex subunit 4, VID24 homolog
mm39_v1_chr5_+_102629240_102629257	2.27226	AGCUUAU	ENSMUST00000073302.12|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24	ENSMUST00000094559.9|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24
mm39_v1_chr4_-_19708910_19709004	2.24505	AGCUUAU	ENSMUST00000108246.9|Wwp1|ENSMUSG00000041058.16|WW domain containing E3 ubiquitin protein ligase 1
mm39_v1_chr5_-_136596299_136596390	2.23703	AGCUUAU	ENSMUST00000004097.16|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr10_+_86136236_86136467	2.18295	AGCUUAU	ENSMUST00000020234.14|Timp3|ENSMUSG00000020044.14|tissue inhibitor of metalloproteinase 3
mm39_v1_chrX_+_41238193_41238289	2.13966	AGCUUAU	ENSMUST00000115073.9|Stag2|ENSMUSG00000025862.15|stromal antigen 2	ENSMUST00000115072.8|Stag2|ENSMUSG00000025862.15|stromal antigen 2
mm39_v1_chr14_+_64181115_64181136	2.10096	AGCUUAU	ENSMUST00000079652.7|Sox7|ENSMUSG00000063060.7|SRY (sex determining region Y)-box 7
mm39_v1_chr10_-_61288437_61288589	2.01346	AGCUUAU	ENSMUST00000167087.2|Eif4ebp2|ENSMUSG00000020091.16|eukaryotic translation initiation factor 4E binding protein 2	ENSMUST00000020288.15|Eif4ebp2|ENSMUSG00000020091.16|eukaryotic translation initiation factor 4E binding protein 2
mm39_v1_chr9_-_85209162_85209183	1.89072	AGCUUAU	ENSMUST00000034802.15|Tent5a|ENSMUSG00000032265.15|terminal nucleotidyltransferase 5A
mm39_v1_chr1_-_134006847_134006862	1.8032	AGCUUAU	ENSMUST00000020692.7|Btg2|ENSMUSG00000020423.7|BTG anti-proliferation factor 2
mm39_v1_chr4_-_155306992_155307049	1.73597	AGCUUAU	ENSMUST00000084103.10|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)	ENSMUST00000030917.6|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)
mm39_v1_chr2_-_102731691_102732010	1.65338	AGCUUAU	ENSMUST00000111192.3|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000111190.9|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000111198.9|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000111191.9|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000060516.14|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000099673.9|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000005218.15|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000111194.8|Cd44|ENSMUSG00000005087.18|CD44 antigen
mm39_v1_chr19_+_41471067_41471128	1.65207	AGCUUAU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr16_-_4340920_4340939	1.65184	AGCUUAU	ENSMUST00000090500.10|Srl|ENSMUSG00000022519.15|sarcalumenin	ENSMUST00000023161.8|Srl|ENSMUSG00000022519.15|sarcalumenin
mm39_v1_chr5_+_3393893_3393945	1.6357	AGCUUAU	ENSMUST00000165117.8|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6	ENSMUST00000197385.2|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6
mm39_v1_chr3_+_37694094_37694229	1.6152	AGCUUAU	ENSMUST00000108109.8|Spry1|ENSMUSG00000037211.13|sprouty RTK signaling antagonist 1	ENSMUST00000038569.8|Spry1|ENSMUSG00000037211.13|sprouty RTK signaling antagonist 1	ENSMUST00000108107.2|Spry1|ENSMUSG00000037211.13|sprouty RTK signaling antagonist 1
mm39_v1_chr9_-_116004265_116004333	1.60901	AGCUUAU	ENSMUST00000061101.12|Tgfbr2|ENSMUSG00000032440.14|transforming growth factor, beta receptor II
mm39_v1_chr2_+_109747984_109748003	1.55964	AGCUUAU	ENSMUST00000046548.14|Lgr4|ENSMUSG00000050199.14|leucine-rich repeat-containing G protein-coupled receptor 4	ENSMUST00000111037.3|Lgr4|ENSMUSG00000050199.14|leucine-rich repeat-containing G protein-coupled receptor 4
mm39_v1_chrX_+_159173680_159173726	1.55724	AGCUUAU	ENSMUST00000112408.9|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112402.8|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112401.8|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112400.8|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112405.9|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112404.9|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000146805.8|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2
mm39_v1_chr18_+_36414122_36414204	1.49638	AGCUUAU	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chr4_-_123644091_123644138	1.49147	AGCUUAU	ENSMUST00000102636.4|Akirin1|ENSMUSG00000023075.10|akirin 1
mm39_v1_chr7_+_65511777_65511888	1.38378	AGCUUAU	ENSMUST00000055576.12|Pcsk6|ENSMUSG00000030513.15|proprotein convertase subtilisin/kexin type 6	ENSMUST00000098391.11|Pcsk6|ENSMUSG00000030513.15|proprotein convertase subtilisin/kexin type 6
mm39_v1_chr4_+_99952988_99953064	1.38186	AGCUUAU	ENSMUST00000039630.6|Ror1|ENSMUSG00000035305.6|receptor tyrosine kinase-like orphan receptor 1
mm39_v1_chr4_-_82423985_82424044	1.29859	AGCUUAU	ENSMUST00000107245.9|Nfib|ENSMUSG00000008575.18|nuclear factor I/B	ENSMUST00000107246.2|Nfib|ENSMUSG00000008575.18|nuclear factor I/B
mm39_v1_chr5_-_50216249_50216352	1.28726	AGCUUAU	ENSMUST00000030971.7|Adgra3|ENSMUSG00000029090.13|adhesion G protein-coupled receptor A3
mm39_v1_chr13_-_99027544_99027571	1.25962	AGCUUAU	ENSMUST00000109399.9|Tnpo1|ENSMUSG00000009470.18|transportin 1
mm39_v1_chr15_+_80595486_80595541	1.25292	AGCUUAU	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr14_-_4808744_4808823	1.23432	AGCUUAU	ENSMUST00000022303.17|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta	ENSMUST00000091471.12|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta
mm39_v1_chr6_-_71417607_71417630	1.22906	AGCUUAU	ENSMUST00000002292.15|Rmnd5a|ENSMUSG00000002222.15|required for meiotic nuclear division 5 homolog A
mm39_v1_chr8_-_112603292_112603382	1.21673	AGCUUAU	ENSMUST00000034431.3|Tmem170|ENSMUSG00000031953.3|transmembrane protein 170
mm39_v1_chr10_-_102864904_102864915	1.2033	AGCUUAU	ENSMUST00000167156.9|Alx1|ENSMUSG00000036602.15|ALX homeobox 1
mm39_v1_chr13_+_5911481_5911521	1.19999	AGCUUAU	ENSMUST00000000080.8|Klf6|ENSMUSG00000000078.8|Kruppel-like factor 6
mm39_v1_chr9_-_43017249_43017322	1.12351	AGCUUAU	ENSMUST00000165665.9|Arhgef12|ENSMUSG00000059495.15|Rho guanine nucleotide exchange factor (GEF) 12
mm39_v1_chr7_-_119494918_119494975	1.11233	AGCUUAU	ENSMUST00000059851.14|Dcun1d3|ENSMUSG00000048787.14|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm39_v1_chr11_-_49603501_49603555	1.10202	AGCUUAU	ENSMUST00000020624.7|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6	ENSMUST00000145353.8|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6
mm39_v1_chr3_-_51184895_51184996	1.04244	AGCUUAU	ENSMUST00000108051.8|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000108053.9|Elf2|ENSMUSG00000037174.19|E74-like factor 2
mm39_v1_chr2_-_148250024_148250108	0.999901	AGCUUAU	ENSMUST00000099270.5|Thbd|ENSMUSG00000074743.5|thrombomodulin
mm39_v1_chr6_+_14901343_14901363	0.953874	AGCUUAU	ENSMUST00000115477.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr16_-_46317318_46317349	0.940254	AGCUUAU	ENSMUST00000023335.13|Nectin3|ENSMUSG00000022656.16|nectin cell adhesion molecule 3	ENSMUST00000023334.15|Nectin3|ENSMUSG00000022656.16|nectin cell adhesion molecule 3
mm39_v1_chr18_+_56565188_56565236	0.877685	AGCUUAU	ENSMUST00000070166.6|Gramd3|ENSMUSG00000001700.11|GRAM domain containing 3
mm39_v1_chr3_+_137770813_137770839	0.870517	AGCUUAU	ENSMUST00000163080.3|1110002E22Rik|ENSMUSG00000090066.3|RIKEN cDNA 1110002E22 gene
mm39_v1_chr11_-_118977047_118977075	0.869621	AGCUUAU	ENSMUST00000026665.8|Cbx4|ENSMUSG00000039989.8|chromobox 4
mm39_v1_chr3_+_128993568_128993591	0.845904	AGCUUAU	ENSMUST00000029657.16|Pitx2|ENSMUSG00000028023.17|paired-like homeodomain transcription factor 2	ENSMUST00000106382.11|Pitx2|ENSMUSG00000028023.17|paired-like homeodomain transcription factor 2
mm39_v1_chr14_-_21102487_21102592	0.844755	AGCUUAU	ENSMUST00000154460.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit	ENSMUST00000130291.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit
mm39_v1_chr2_-_126718129_126718191	0.8388	AGCUUAU	ENSMUST00000103224.10|Trpm7|ENSMUSG00000027365.15|transient receptor potential cation channel, subfamily M, member 7
mm39_v1_chrX_+_158038778_158038894	0.837427	AGCUUAU	ENSMUST00000126686.8|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3	ENSMUST00000033671.13|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chr3_-_89820451_89820509	0.817263	AGCUUAU	ENSMUST00000029559.7|Il6ra|ENSMUSG00000027947.12|interleukin 6 receptor, alpha	ENSMUST00000197679.5|Il6ra|ENSMUSG00000027947.12|interleukin 6 receptor, alpha
mm39_v1_chr13_-_85437118_85437178	0.808602	AGCUUAU	ENSMUST00000109552.3|Rasa1|ENSMUSG00000021549.15|RAS p21 protein activator 1
mm39_v1_chr2_-_168048795_168048842	0.79977	AGCUUAU	ENSMUST00000057793.11|Adnp|ENSMUSG00000051149.16|activity-dependent neuroprotective protein
mm39_v1_chr1_-_178165223_178165362	0.778988	AGCUUAU	ENSMUST00000037748.9|Hnrnpu|ENSMUSG00000039630.11|heterogeneous nuclear ribonucleoprotein U
mm39_v1_chr13_-_115238427_115238520	0.760249	AGCUUAU	ENSMUST00000224997.2|Gm49395|ENSMUSG00000114470.2|predicted gene, 49395	ENSMUST00000061673.9|Itga1|ENSMUSG00000042284.11|integrin alpha 1
mm39_v1_chr17_-_63806963_63807070	0.754812	AGCUUAU	ENSMUST00000024761.13|Fbxl17|ENSMUSG00000023965.14|F-box and leucine-rich repeat protein 17
mm39_v1_chr9_+_109704609_109704684	0.746267	AGCUUAU	ENSMUST00000094324.8|Cdc25a|ENSMUSG00000032477.15|cell division cycle 25A
mm39_v1_chr4_+_43875524_43875558	0.735554	AGCUUAU	ENSMUST00000030198.7|Reck|ENSMUSG00000028476.14|reversion-inducing-cysteine-rich protein with kazal motifs
mm39_v1_chr6_-_129484070_129484134	0.719422	AGCUUAU	ENSMUST00000183258.8|Olr1|ENSMUSG00000030162.15|oxidized low density lipoprotein (lectin-like) receptor 1	ENSMUST00000182784.4|Olr1|ENSMUSG00000030162.15|oxidized low density lipoprotein (lectin-like) receptor 1	ENSMUST00000032265.13|Olr1|ENSMUSG00000030162.15|oxidized low density lipoprotein (lectin-like) receptor 1	ENSMUST00000162815.2|Olr1|ENSMUSG00000030162.15|oxidized low density lipoprotein (lectin-like) receptor 1
mm39_v1_chr2_+_79465696_79465729	0.71879	AGCUUAU	ENSMUST00000111785.9|Itprid2|ENSMUSG00000027007.17|ITPR interacting domain containing 2
mm39_v1_chr17_-_84495364_84495381	0.706899	AGCUUAU	ENSMUST00000060366.7|Zfp36l2|ENSMUSG00000045817.9|zinc finger protein 36, C3H type-like 2
mm39_v1_chr10_+_53473032_53473100	0.677727	AGCUUAU	ENSMUST00000020004.8|Asf1a|ENSMUSG00000019857.8|anti-silencing function 1A histone chaperone
mm39_v1_chr6_+_66873381_66873533	0.651618	AGCUUAU	ENSMUST00000043148.13|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114228.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114227.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114226.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000204511.3|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114225.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114224.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114222.4|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12
mm39_v1_chr19_-_29783389_29783389	0.645841	AGCUUAU	ENSMUST00000177155.8|9930021J03Rik|ENSMUSG00000046138.16|RIKEN cDNA 9930021J03 gene
mm39_v1_chr6_-_126143678_126143708	0.609231	AGCUUAU	ENSMUST00000112244.8|Ntf3|ENSMUSG00000049107.14|neurotrophin 3
mm39_v1_chr17_-_88372671_88372719	0.59482	AGCUUAU	ENSMUST00000235112.2|Fbxo11|ENSMUSG00000005371.16|F-box protein 11	ENSMUST00000005504.15|Fbxo11|ENSMUSG00000005371.16|F-box protein 11
mm39_v1_chr11_-_100830183_100830262	0.585771	AGCUUAU	ENSMUST00000092671.12|Stat3|ENSMUSG00000004040.17|signal transducer and activator of transcription 3	ENSMUST00000103114.8|Stat3|ENSMUSG00000004040.17|signal transducer and activator of transcription 3
mm39_v1_chr2_+_24257576_24257634	0.57942	AGCUUAU	ENSMUST00000140547.2|Psd4|ENSMUSG00000026979.17|pleckstrin and Sec7 domain containing 4	ENSMUST00000102942.8|Psd4|ENSMUSG00000026979.17|pleckstrin and Sec7 domain containing 4
mm39_v1_chr7_-_115637970_115637985	0.579398	AGCUUAU	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr5_+_147367237_147367355	0.566426	AGCUUAU	ENSMUST00000176600.8|Pan3|ENSMUSG00000029647.16|PAN3 poly(A) specific ribonuclease subunit
mm39_v1_chr14_+_49303952_49304045	0.562521	AGCUUAU	ENSMUST00000037473.6|Ap5m1|ENSMUSG00000036291.7|adaptor-related protein complex 5, mu 1 subunit	ENSMUST00000228238.2|Ap5m1|ENSMUSG00000036291.7|adaptor-related protein complex 5, mu 1 subunit
mm39_v1_chr5_-_4154681_4154802	0.560348	AGCUUAU	ENSMUST00000001507.5|Cyp51|ENSMUSG00000001467.6|cytochrome P450, family 51
mm39_v1_chr3_+_97920819_97920863	0.547412	AGCUUAU	ENSMUST00000079812.8|Notch2|ENSMUSG00000027878.12|notch 2
mm39_v1_chr2_+_153583194_153583214	0.530939	AGCUUAU	ENSMUST00000028981.9|Mapre1|ENSMUSG00000027479.15|microtubule-associated protein, RP/EB family, member 1
mm39_v1_chr19_-_6107766_6107815	0.51428	AGCUUAU	ENSMUST00000235520.2|Mrpl49|ENSMUSG00000007338.11|mitochondrial ribosomal protein L49	ENSMUST00000007482.8|Mrpl49|ENSMUSG00000007338.11|mitochondrial ribosomal protein L49
mm39_v1_chr2_-_12306722_12306734	0.514153	AGCUUAU	ENSMUST00000028106.11|Itga8|ENSMUSG00000026768.11|integrin alpha 8
mm39_v1_chrM_+_3906_3942	0.466825	AGCUUAU	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm39_v1_chr15_+_102378966_102379220	0.463637	AGCUUAU	ENSMUST00000077037.13|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229102.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229618.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229275.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000231089.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229802.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229854.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000108838.5|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2
mm39_v1_chr3_-_37286714_37286786	0.446455	AGCUUAU	ENSMUST00000161015.2|Il21|ENSMUSG00000027718.9|interleukin 21	ENSMUST00000029273.8|Il21|ENSMUSG00000027718.9|interleukin 21
mm39_v1_chr16_+_11140740_11140775	0.430327	AGCUUAU	ENSMUST00000180792.8|Snx29|ENSMUSG00000071669.15|sorting nexin 29
mm39_v1_chr11_+_79883885_79883963	0.42975	AGCUUAU	ENSMUST00000163272.2|Suz12|ENSMUSG00000017548.16|SUZ12 polycomb repressive complex 2 subunit	ENSMUST00000017692.15|Suz12|ENSMUSG00000017548.16|SUZ12 polycomb repressive complex 2 subunit
mm39_v1_chr12_+_9624437_9624448	0.427212	AGCUUAU	ENSMUST00000057021.9|Osr1|ENSMUSG00000048387.9|odd-skipped related transcription factor 1
mm39_v1_chr6_-_99243455_99243501	0.407748	AGCUUAU	ENSMUST00000113326.9|Foxp1|ENSMUSG00000030067.18|forkhead box P1
mm39_v1_chr10_+_67815395_67815408	0.407523	AGCUUAU	ENSMUST00000118160.8|Rtkn2|ENSMUSG00000037846.19|rhotekin 2
mm39_v1_chr1_-_106641940_106642062	0.392666	AGCUUAU	ENSMUST00000112751.2|Bcl2|ENSMUSG00000057329.8|B cell leukemia/lymphoma 2
mm39_v1_chr5_+_16758777_16758795	0.386961	AGCUUAU	ENSMUST00000030683.8|Hgf|ENSMUSG00000028864.8|hepatocyte growth factor
mm39_v1_chr1_+_59802543_59802559	0.354588	AGCUUAU	ENSMUST00000087435.7|Bmpr2|ENSMUSG00000067336.7|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm39_v1_chr9_+_51958453_51958473	0.347256	AGCUUAU	ENSMUST00000163153.9|Rdx|ENSMUSG00000032050.19|radixin
mm39_v1_chr4_+_125997734_125997784	0.325034	AGCUUAU	ENSMUST00000116286.9|Stk40|ENSMUSG00000042608.16|serine/threonine kinase 40	ENSMUST00000094761.11|Stk40|ENSMUSG00000042608.16|serine/threonine kinase 40
mm39_v1_chr8_-_86281946_86282003	0.321291	AGCUUAU	ENSMUST00000034138.7|Dnaja2|ENSMUSG00000031701.7|DnaJ heat shock protein family (Hsp40) member A2
mm39_v1_chr3_-_9675130_9675146	0.319863	AGCUUAU	ENSMUST00000041124.13|Zfp704|ENSMUSG00000040209.13|zinc finger protein 704
mm39_v1_chr2_+_48704121_48704187	0.304785	AGCUUAU	ENSMUST00000063886.4|Acvr2a|ENSMUSG00000052155.6|activin receptor IIA
mm39_v1_chr10_+_42637479_42637492	0.294344	AGCUUAU	ENSMUST00000019937.5|Sec63|ENSMUSG00000019802.14|SEC63-like (S. cerevisiae)
mm39_v1_chr6_+_134807097_134807146	0.292086	AGCUUAU	ENSMUST00000046303.12|Crebl2|ENSMUSG00000032652.14|cAMP responsive element binding protein-like 2
mm39_v1_chr4_-_133695204_133695263	0.264643	AGCUUAU	ENSMUST00000100472.10|Hmgn2|ENSMUSG00000003038.16|high mobility group nucleosomal binding domain 2	ENSMUST00000136327.2|Hmgn2|ENSMUSG00000003038.16|high mobility group nucleosomal binding domain 2
mm39_v1_chr3_-_41037427_41037481	0.253682	AGCUUAU	ENSMUST00000058578.8|Pgrmc2|ENSMUSG00000049940.8|progesterone receptor membrane component 2
mm39_v1_chr4_+_89055359_89055359	0.248875	AGCUUAU	ENSMUST00000058030.10|Mtap|ENSMUSG00000062937.8|methylthioadenosine phosphorylase
mm39_v1_chr1_-_161616031_161616079	0.241312	AGCUUAU	ENSMUST00000000834.4|Fasl|ENSMUSG00000000817.11|Fas ligand (TNF superfamily, member 6)
mm39_v1_chr6_-_86503178_86503303	0.214363	AGCUUAU	ENSMUST00000053015.7|Pcbp1|ENSMUSG00000051695.7|poly(rC) binding protein 1
mm39_v1_chr5_+_123280250_123280350	0.182661	AGCUUAU	ENSMUST00000174836.8|Setd1b|ENSMUSG00000038384.17|SET domain containing 1B	ENSMUST00000163030.9|Setd1b|ENSMUSG00000038384.17|SET domain containing 1B
mm39_v1_chr8_+_108020092_108020118	0.178382	AGCUUAU	ENSMUST00000169453.8|Nfat5|ENSMUSG00000003847.17|nuclear factor of activated T cells 5
mm39_v1_chrX_+_159945740_159945771	0.172469	AGCUUAU	ENSMUST00000074802.12|Scml2|ENSMUSG00000000037.18|Scm polycomb group protein like 2	ENSMUST00000019101.11|Scml2|ENSMUSG00000000037.18|Scm polycomb group protein like 2	ENSMUST00000112345.8|Scml2|ENSMUSG00000000037.18|Scm polycomb group protein like 2
mm39_v1_chr10_-_18891095_18891158	0.169359	AGCUUAU	ENSMUST00000019997.11|Tnfaip3|ENSMUSG00000019850.12|tumor necrosis factor, alpha-induced protein 3
mm39_v1_chr2_+_173501553_173501664	0.167589	AGCUUAU	ENSMUST00000029024.10|Rab22a|ENSMUSG00000027519.11|RAB22A, member RAS oncogene family	ENSMUST00000109110.4|Rab22a|ENSMUSG00000027519.11|RAB22A, member RAS oncogene family
mm39_v1_chr8_+_107662352_107662410	0.166652	AGCUUAU	ENSMUST00000212524.2|Sntb2|ENSMUSG00000041308.7|syntrophin, basic 2	ENSMUST00000047425.5|Sntb2|ENSMUSG00000041308.7|syntrophin, basic 2
mm39_v1_chr2_+_118731860_118731969	0.163748	AGCUUAU	ENSMUST00000036578.7|Bahd1|ENSMUSG00000040007.9|bromo adjacent homology domain containing 1
mm39_v1_chr5_+_122296322_122296419	0.159999	AGCUUAU	ENSMUST00000102528.11|Ppp1cc|ENSMUSG00000004455.17|protein phosphatase 1 catalytic subunit gamma	ENSMUST00000086294.11|Ppp1cc|ENSMUSG00000004455.17|protein phosphatase 1 catalytic subunit gamma
mm39_v1_chr1_+_74545203_74545264	0.141376	AGCUUAU	ENSMUST00000087215.7|Cnot9|ENSMUSG00000026174.10|CCR4-NOT transcription complex, subunit 9
mm39_v1_chr9_-_70564403_70564470	0.139953	AGCUUAU	ENSMUST00000213380.2|Mindy2|ENSMUSG00000042444.11|MINDY lysine 48 deubiquitinase 2	ENSMUST00000049031.6|Mindy2|ENSMUSG00000042444.11|MINDY lysine 48 deubiquitinase 2
mm39_v1_chr4_+_122889737_122889753	0.138829	AGCUUAU	ENSMUST00000106252.9|Mycl|ENSMUSG00000028654.14|v-myc avian myelocytomatosis viral oncogene lung carcinoma derived
mm39_v1_chr14_+_30741082_30741114	0.132207	AGCUUAU	ENSMUST00000112098.11|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000112095.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000112106.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000146325.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1
mm39_v1_chr7_+_120276801_120276868	0.125082	AGCUUAU	ENSMUST00000208454.2|Mosmo|ENSMUSG00000046096.8|modulator of smoothened	ENSMUST00000060175.8|Mosmo|ENSMUSG00000046096.8|modulator of smoothened
mm39_v1_chr4_-_70453140_70453224	0.120405	AGCUUAU	ENSMUST00000107359.9|Megf9|ENSMUSG00000039270.10|multiple EGF-like-domains 9
mm39_v1_chr18_+_35904541_35904655	0.11404	AGCUUAU	ENSMUST00000170693.9|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A	ENSMUST00000237984.2|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A	ENSMUST00000167406.2|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A
mm39_v1_chr11_-_100541519_100541575	0.0954236	AGCUUAU	ENSMUST00000103119.10|Zfp385c|ENSMUSG00000014198.16|zinc finger protein 385C
mm39_v1_chr5_-_64126194_64126247	0.0907403	AGCUUAU	ENSMUST00000154169.4|Rell1|ENSMUSG00000047881.15|RELT-like 1
mm39_v1_chr6_+_71470833_71470902	0.0892892	AGCUUAU	ENSMUST00000064637.11|Rnf103|ENSMUSG00000052656.13|ring finger protein 103	ENSMUST00000114178.8|Rnf103|ENSMUSG00000052656.13|ring finger protein 103
mm39_v1_chr3_+_151916059_151916102	0.0876489	AGCUUAU	ENSMUST00000166984.8|Fubp1|ENSMUSG00000028034.16|far upstream element (FUSE) binding protein 1
mm39_v1_chr10_+_7556948_7556990	0.0759321	AGCUUAU	ENSMUST00000165952.9|Lats1|ENSMUSG00000040021.14|large tumor suppressor
mm39_v1_chr5_+_53713137_53713176	0.0734883	AGCUUAU	ENSMUST00000087360.9|Rbpj|ENSMUSG00000039191.13|recombination signal binding protein for immunoglobulin kappa J region
mm39_v1_chr17_+_29251602_29251655	0.0691983	AGCUUAU	ENSMUST00000130216.3|Srsf3|ENSMUSG00000071172.14|serine and arginine-rich splicing factor 3
mm39_v1_chr5_-_92496730_92496748	0.0617401	AGCUUAU	ENSMUST00000038816.13|Cxcl10|ENSMUSG00000034855.14|chemokine (C-X-C motif) ligand 10	ENSMUST00000118006.3|Cxcl10|ENSMUSG00000034855.14|chemokine (C-X-C motif) ligand 10
mm39_v1_chr4_-_138641225_138641296	0.0551497	AGCUUAU	ENSMUST00000097830.4|Otud3|ENSMUSG00000041161.9|OTU domain containing 3
mm39_v1_chr4_-_141518202_141518252	0.0378957	AGCUUAU	ENSMUST00000038014.11|Dnajc16|ENSMUSG00000040697.11|DnaJ heat shock protein family (Hsp40) member C16	ENSMUST00000153880.2|Dnajc16|ENSMUSG00000040697.11|DnaJ heat shock protein family (Hsp40) member C16
mm39_v1_chr17_+_26934617_26934698	0.0365148	AGCUUAU	ENSMUST00000062519.14|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000144221.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000142539.8|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000151681.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor
mm39_v1_chr19_+_7394951_7395015	0.0265061	AGCUUAU	ENSMUST00000159348.3|2700081O15Rik|ENSMUSG00000053080.11|RIKEN cDNA 2700081O15 gene
mm39_v1_chr13_-_64300964_64301043	0.0260801	AGCUUAU	ENSMUST00000059817.12|Zfp367|ENSMUSG00000044934.14|zinc finger protein 367	ENSMUST00000117241.2|Zfp367|ENSMUSG00000044934.14|zinc finger protein 367
mm39_v1_chr3_-_9898713_9898739	0.0255808	AGCUUAU	ENSMUST00000161949.8|Pag1|ENSMUSG00000027508.16|phosphoprotein associated with glycosphingolipid microdomains 1
mm39_v1_chr9_-_123461593_123461630	0.0252508	AGCUUAU	ENSMUST00000026273.11|Slc6a20b|ENSMUSG00000025243.18|solute carrier family 6 (neurotransmitter transporter), member 20B
mm39_v1_chr8_-_35432783_35432869	0.0246673	AGCUUAU	ENSMUST00000033929.6|Tnks|ENSMUSG00000031529.6|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
