mm39_v1_chr1_+_45350698_45350798	3.3119	AGGUAGU	ENSMUST00000087883.13|Col3a1|ENSMUSG00000026043.19|collagen, type III, alpha 1
mm39_v1_chr9_-_75518585_75518616	3.04551	AGGUAGU	ENSMUST00000098552.10|Tmod2|ENSMUSG00000032186.16|tropomodulin 2	ENSMUST00000064433.11|Tmod2|ENSMUSG00000032186.16|tropomodulin 2
mm39_v1_chr9_+_111140741_111140826	2.9824	AGGUAGU	ENSMUST00000078626.8|Trank1|ENSMUSG00000062296.9|tetratricopeptide repeat and ankyrin repeat containing 1
mm39_v1_chr11_+_94827050_94827087	2.66995	AGGUAGU	ENSMUST00000001547.8|Col1a1|ENSMUSG00000001506.11|collagen, type I, alpha 1
mm39_v1_chr1_+_86230931_86230997	2.4419	AGGUAGU	ENSMUST00000113306.4|B3gnt7|ENSMUSG00000079445.4|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
mm39_v1_chr9_+_65008735_65008817	2.39481	AGGUAGU	ENSMUST00000213533.2|Igdcc4|ENSMUSG00000032816.16|immunoglobulin superfamily, DCC subclass, member 4	ENSMUST00000035499.5|Igdcc4|ENSMUSG00000032816.16|immunoglobulin superfamily, DCC subclass, member 4	ENSMUST00000077696.13|Igdcc4|ENSMUSG00000032816.16|immunoglobulin superfamily, DCC subclass, member 4	ENSMUST00000166273.2|Igdcc4|ENSMUSG00000032816.16|immunoglobulin superfamily, DCC subclass, member 4
mm39_v1_chr6_+_4505493_4505493	2.18849	AGGUAGU	ENSMUST00000031668.10|Col1a2|ENSMUSG00000029661.17|collagen, type I, alpha 2
mm39_v1_chr1_-_168259465_168259474	2.11399	AGGUAGU	ENSMUST00000176540.8|Pbx1|ENSMUSG00000052534.16|pre B cell leukemia homeobox 1
mm39_v1_chrX_+_35592006_35592071	1.92596	AGGUAGU	ENSMUST00000016383.10|Lonrf3|ENSMUSG00000016239.12|LON peptidase N-terminal domain and ring finger 3
mm39_v1_chr17_-_68311073_68311135	1.85293	AGGUAGU	ENSMUST00000024840.12|Arhgap28|ENSMUSG00000024043.14|Rho GTPase activating protein 28
mm39_v1_chr11_+_67477347_67477366	1.76972	AGGUAGU	ENSMUST00000108682.9|Gas7|ENSMUSG00000033066.17|growth arrest specific 7
mm39_v1_chr7_-_16657825_16658039	1.72898	AGGUAGU	ENSMUST00000019514.10|Calm3|ENSMUSG00000019370.11|calmodulin 3
mm39_v1_chr11_-_76737794_76737871	1.59567	AGGUAGU	ENSMUST00000021201.6|Cpd|ENSMUSG00000020841.6|carboxypeptidase D
mm39_v1_chr1_-_37580084_37580128	1.51536	AGGUAGU	ENSMUST00000151952.8|Mgat4a|ENSMUSG00000026110.16|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm39_v1_chr4_+_54947976_54948054	1.47107	AGGUAGU	ENSMUST00000098070.10|Zfp462|ENSMUSG00000060206.12|zinc finger protein 462
mm39_v1_chr1_+_20960819_20960841	1.44605	AGGUAGU	ENSMUST00000189400.7|Paqr8|ENSMUSG00000025931.16|progestin and adipoQ receptor family member VIII
mm39_v1_chr3_+_68375495_68375542	1.41402	AGGUAGU	ENSMUST00000182532.8|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr18_-_15536747_15536815	1.41299	AGGUAGU	ENSMUST00000079081.8|Aqp4|ENSMUSG00000024411.12|aquaporin 4
mm39_v1_chr10_+_117465397_117465411	1.38034	AGGUAGU	ENSMUST00000020399.6|Cpm|ENSMUSG00000020183.12|carboxypeptidase M
mm39_v1_chr19_+_23736205_23736274	1.33734	AGGUAGU	ENSMUST00000025830.9|Apba1|ENSMUSG00000024897.10|amyloid beta (A4) precursor protein binding, family  A, member 1
mm39_v1_chr12_+_100165694_100165773	1.32284	AGGUAGU	ENSMUST00000110082.11|Calm1|ENSMUSG00000001175.17|calmodulin 1
mm39_v1_chr2_-_93164812_93164869	1.2591	AGGUAGU	ENSMUST00000111265.9|Tspan18|ENSMUSG00000027217.14|tetraspanin 18
mm39_v1_chr1_-_135032972_135033014	1.21237	AGGUAGU	ENSMUST00000044828.14|Lgr6|ENSMUSG00000042793.14|leucine-rich repeat-containing G protein-coupled receptor 6
mm39_v1_chr3_-_132940647_132940658	1.19749	AGGUAGU	ENSMUST00000147041.10|Arhgef38|ENSMUSG00000040969.15|Rho guanine nucleotide exchange factor (GEF) 38	ENSMUST00000161022.9|Arhgef38|ENSMUSG00000040969.15|Rho guanine nucleotide exchange factor (GEF) 38
mm39_v1_chr15_+_102898966_102899039	1.16921	AGGUAGU	ENSMUST00000001703.8|Hoxc8|ENSMUSG00000001657.8|homeobox C8
mm39_v1_chr16_+_32882882_32882919	1.16263	AGGUAGU	ENSMUST00000023497.3|Lmln|ENSMUSG00000022802.3|leishmanolysin-like (metallopeptidase M8 family)
mm39_v1_chr2_+_31135813_31135913	1.14122	AGGUAGU	ENSMUST00000000199.8|Ncs1|ENSMUSG00000062661.7|neuronal calcium sensor 1
mm39_v1_chr11_+_96177449_96177480	1.07565	AGGUAGU	ENSMUST00000049352.8|Hoxb7|ENSMUSG00000038721.9|homeobox B7
mm39_v1_chr2_-_152256947_152256947	1.04385	AGGUAGU	ENSMUST00000099207.5|Zcchc3|ENSMUSG00000074682.5|zinc finger, CCHC domain containing 3
mm39_v1_chr7_+_44091822_44091909	1.01438	AGGUAGU	ENSMUST00000058667.15|Lrrc4b|ENSMUSG00000047085.15|leucine rich repeat containing 4B
mm39_v1_chr10_-_120312374_120312388	1.00447	AGGUAGU	ENSMUST00000072777.14|Hmga2|ENSMUSG00000056758.15|high mobility group AT-hook 2	ENSMUST00000159699.2|Hmga2|ENSMUSG00000056758.15|high mobility group AT-hook 2
mm39_v1_chr7_+_15864265_15864290	1.00354	AGGUAGU	ENSMUST00000168693.3|Slc8a2|ENSMUSG00000030376.9|solute carrier family 8 (sodium/calcium exchanger), member 2
mm39_v1_chr5_-_135573962_135573982	0.987862	AGGUAGU	ENSMUST00000060311.12|Hip1|ENSMUSG00000039959.14|huntingtin interacting protein 1
mm39_v1_chr2_-_34262012_34262056	0.972176	AGGUAGU	ENSMUST00000113132.9|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3	ENSMUST00000040638.15|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3
mm39_v1_chr7_+_120442048_120442060	0.972027	AGGUAGU	ENSMUST00000047875.16|Eef2k|ENSMUSG00000035064.18|eukaryotic elongation factor-2 kinase
mm39_v1_chr7_+_90075762_90075785	0.965344	AGGUAGU	ENSMUST00000061391.9|Ccdc89|ENSMUSG00000044362.9|coiled-coil domain containing 89
mm39_v1_chr6_-_144994534_144994551	0.958228	AGGUAGU	ENSMUST00000032402.12|Bcat1|ENSMUSG00000030268.18|branched chain aminotransferase 1, cytosolic
mm39_v1_chr15_+_11064887_11064909	0.946556	AGGUAGU	ENSMUST00000061318.9|Adamts12|ENSMUSG00000047497.11|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12
mm39_v1_chr6_+_4747298_4747354	0.942348	AGGUAGU	ENSMUST00000166678.2|Peg10|ENSMUSG00000092035.9|paternally expressed 10	ENSMUST00000176204.8|Peg10|ENSMUSG00000092035.9|paternally expressed 10
mm39_v1_chr17_-_81035453_81035522	0.932604	AGGUAGU	ENSMUST00000234133.2|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3	ENSMUST00000112389.9|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3	ENSMUST00000025089.9|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3
mm39_v1_chr9_+_102988940_102989065	0.927866	AGGUAGU	ENSMUST00000189134.2|Rab6b|ENSMUSG00000032549.8|RAB6B, member RAS oncogene family	ENSMUST00000035155.8|Rab6b|ENSMUSG00000032549.8|RAB6B, member RAS oncogene family
mm39_v1_chr9_-_107109108_107109117	0.879822	AGGUAGU	ENSMUST00000044532.11|Dock3|ENSMUSG00000039716.13|dedicator of cyto-kinesis 3
mm39_v1_chr13_+_35843816_35843853	0.83865	AGGUAGU	ENSMUST00000075220.14|Cdyl|ENSMUSG00000059288.15|chromodomain protein, Y chromosome-like
mm39_v1_chr19_+_28941292_28941369	0.827521	AGGUAGU	ENSMUST00000045674.4|Plpp6|ENSMUSG00000040105.4|phospholipid phosphatase 6
mm39_v1_chr15_-_43034205_43034227	0.820564	AGGUAGU	ENSMUST00000063492.8|Rspo2|ENSMUSG00000051920.8|R-spondin 2	ENSMUST00000226810.2|Rspo2|ENSMUSG00000051920.8|R-spondin 2
mm39_v1_chr13_-_117162041_117162077	0.812108	AGGUAGU	ENSMUST00000022239.8|Parp8|ENSMUSG00000021725.10|poly (ADP-ribose) polymerase family, member 8
mm39_v1_chr16_-_97412169_97412395	0.808043	AGGUAGU	ENSMUST00000232141.2|Tmprss2|ENSMUSG00000000385.9|transmembrane protease, serine 2	ENSMUST00000000395.8|Tmprss2|ENSMUSG00000000385.9|transmembrane protease, serine 2
mm39_v1_chr19_-_7360350_7360366	0.791337	AGGUAGU	ENSMUST00000025924.4|Spindoc|ENSMUSG00000024970.6|spindlin interactor and repressor of chromatin binding
mm39_v1_chr6_+_54572096_54572250	0.750714	AGGUAGU	ENSMUST00000119706.8|Plekha8|ENSMUSG00000005225.16|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
mm39_v1_chr8_-_91074971_91075014	0.743569	AGGUAGU	ENSMUST00000109621.10|Tox3|ENSMUSG00000043668.14|TOX high mobility group box family member 3
mm39_v1_chr8_+_117884711_117884876	0.736915	AGGUAGU	ENSMUST00000064488.11|Gan|ENSMUSG00000052557.12|giant axonal neuropathy	ENSMUST00000162997.3|Gan|ENSMUSG00000052557.12|giant axonal neuropathy
mm39_v1_chr6_-_52203146_52203176	0.714731	AGGUAGU	ENSMUST00000114425.3|Hoxa9|ENSMUSG00000038227.16|homeobox A9
mm39_v1_chr10_-_76181089_76181205	0.699587	AGGUAGU	ENSMUST00000036033.14|Dip2a|ENSMUSG00000020231.16|disco interacting protein 2 homolog A	ENSMUST00000160048.8|Dip2a|ENSMUSG00000020231.16|disco interacting protein 2 homolog A	ENSMUST00000105417.10|Dip2a|ENSMUSG00000020231.16|disco interacting protein 2 homolog A
mm39_v1_chr8_-_47805383_47805401	0.644532	AGGUAGU	ENSMUST00000110367.10|Stox2|ENSMUSG00000038143.17|storkhead box 2
mm39_v1_chr8_+_27513819_27513835	0.635193	AGGUAGU	ENSMUST00000033873.9|Erlin2|ENSMUSG00000031483.9|ER lipid raft associated 2	ENSMUST00000211043.2|Erlin2|ENSMUSG00000031483.9|ER lipid raft associated 2
mm39_v1_chr5_-_107437427_107437514	0.632523	AGGUAGU	ENSMUST00000031224.15|Tgfbr3|ENSMUSG00000029287.15|transforming growth factor, beta receptor III
mm39_v1_chr13_-_8921732_8921945	0.628342	AGGUAGU	ENSMUST00000054251.13|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37	ENSMUST00000176813.8|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37	ENSMUST00000175958.2|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37
mm39_v1_chr11_-_50822438_50822469	0.621262	AGGUAGU	ENSMUST00000109124.10|Zfp354b|ENSMUSG00000020335.14|zinc finger protein 354B
mm39_v1_chrX_+_139565657_139565821	0.59128	AGGUAGU	ENSMUST00000112990.8|Mid2|ENSMUSG00000000266.12|midline 2	ENSMUST00000112988.8|Mid2|ENSMUSG00000000266.12|midline 2
mm39_v1_chr9_-_117081518_117081557	0.522378	AGGUAGU	ENSMUST00000111773.10|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein	ENSMUST00000068962.14|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein	ENSMUST00000044901.14|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein
mm39_v1_chr15_+_87509413_87509434	0.506906	AGGUAGU	ENSMUST00000068088.8|Tafa5|ENSMUSG00000054863.10|TAFA chemokine like family member 5
mm39_v1_chr3_+_93349637_93349695	0.502236	AGGUAGU	ENSMUST00000064257.6|Tchh|ENSMUSG00000052415.6|trichohyalin
mm39_v1_chr4_+_28813125_28813139	0.492787	AGGUAGU	ENSMUST00000080934.11|Epha7|ENSMUSG00000028289.13|Eph receptor A7	ENSMUST00000029964.12|Epha7|ENSMUSG00000028289.13|Eph receptor A7
mm39_v1_chr11_+_96183294_96183334	0.491557	AGGUAGU	ENSMUST00000173432.3|Hoxb6|ENSMUSG00000000690.6|homeobox B6
mm39_v1_chr12_-_11486544_11486655	0.478678	AGGUAGU	ENSMUST00000072299.7|Vsnl1|ENSMUSG00000054459.9|visinin-like 1
mm39_v1_chr3_-_10505113_10505185	0.477436	AGGUAGU	ENSMUST00000029047.12|Snx16|ENSMUSG00000027534.17|sorting nexin 16	ENSMUST00000195822.2|Snx16|ENSMUSG00000027534.17|sorting nexin 16	ENSMUST00000099223.11|Snx16|ENSMUSG00000027534.17|sorting nexin 16
mm39_v1_chrX_+_92698469_92698587	0.475563	AGGUAGU	ENSMUST00000113933.9|Pcyt1b|ENSMUSG00000035246.17|phosphate cytidylyltransferase 1, choline, beta isoform
mm39_v1_chr18_+_11052458_11052479	0.472937	AGGUAGU	ENSMUST00000047762.10|Gata6|ENSMUSG00000005836.11|GATA binding protein 6
mm39_v1_chr11_+_54194624_54194670	0.4675	AGGUAGU	ENSMUST00000093106.12|Acsl6|ENSMUSG00000020333.18|acyl-CoA synthetase long-chain family member 6
mm39_v1_chr3_-_104419128_104419250	0.462189	AGGUAGU	ENSMUST00000199070.5|Lrig2|ENSMUSG00000032913.14|leucine-rich repeats and immunoglobulin-like domains 2	ENSMUST00000046316.11|Lrig2|ENSMUSG00000032913.14|leucine-rich repeats and immunoglobulin-like domains 2	ENSMUST00000198332.2|Lrig2|ENSMUSG00000032913.14|leucine-rich repeats and immunoglobulin-like domains 2
mm39_v1_chr1_-_134883645_134883693	0.46143	AGGUAGU	ENSMUST00000045665.13|Ppp1r12b|ENSMUSG00000073557.13|protein phosphatase 1, regulatory subunit 12B	ENSMUST00000086444.6|Ppp1r12b|ENSMUSG00000073557.13|protein phosphatase 1, regulatory subunit 12B	ENSMUST00000112163.2|Ppp1r12b|ENSMUSG00000073557.13|protein phosphatase 1, regulatory subunit 12B
mm39_v1_chr6_+_14901343_14901363	0.442065	AGGUAGU	ENSMUST00000115477.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chrX_-_103244784_103244810	0.435671	AGGUAGU	ENSMUST00000118314.8|Nexmif|ENSMUSG00000046449.16|neurite extension and migration factor
mm39_v1_chr16_-_46317318_46317349	0.433497	AGGUAGU	ENSMUST00000023335.13|Nectin3|ENSMUSG00000022656.16|nectin cell adhesion molecule 3	ENSMUST00000023334.15|Nectin3|ENSMUSG00000022656.16|nectin cell adhesion molecule 3
mm39_v1_chr15_-_6904450_6904450	0.433174	AGGUAGU	ENSMUST00000022746.13|Osmr|ENSMUSG00000022146.13|oncostatin M receptor	ENSMUST00000176826.2|Osmr|ENSMUSG00000022146.13|oncostatin M receptor
mm39_v1_chr14_-_70680882_70680917	0.375439	AGGUAGU	ENSMUST00000000793.13|Polr3d|ENSMUSG00000000776.14|polymerase (RNA) III (DNA directed) polypeptide D
mm39_v1_chr8_+_24159669_24159690	0.356851	AGGUAGU	ENSMUST00000042352.11|Zmat4|ENSMUSG00000037492.17|zinc finger, matrin type 4	ENSMUST00000207301.2|Zmat4|ENSMUSG00000037492.17|zinc finger, matrin type 4
mm39_v1_chr1_+_59802543_59802559	0.35579	AGGUAGU	ENSMUST00000087435.7|Bmpr2|ENSMUSG00000067336.7|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm39_v1_chr12_-_78908409_78908420	0.355379	AGGUAGU	ENSMUST00000021536.9|Atp6v1d|ENSMUSG00000021114.10|ATPase, H+ transporting, lysosomal V1 subunit D
mm39_v1_chr6_-_52181393_52181567	0.348813	AGGUAGU	ENSMUST00000048794.7|Hoxa5|ENSMUSG00000038253.7|homeobox A5
mm39_v1_chr1_-_190758321_190758395	0.348151	AGGUAGU	ENSMUST00000191946.2|Flvcr1|ENSMUSG00000066595.10|feline leukemia virus subgroup C cellular receptor 1	ENSMUST00000085635.6|Flvcr1|ENSMUSG00000066595.10|feline leukemia virus subgroup C cellular receptor 1
mm39_v1_chr6_-_52194440_52194485	0.331288	AGGUAGU	ENSMUST00000048715.9|Hoxa7|ENSMUSG00000038236.9|homeobox A7
mm39_v1_chr14_-_49304110_49304132	0.326496	AGGUAGU	ENSMUST00000162175.9|Exoc5|ENSMUSG00000061244.15|exocyst complex component 5
mm39_v1_chr13_+_97061182_97061205	0.326088	AGGUAGU	ENSMUST00000171324.3|Gcnt4|ENSMUSG00000091387.3|glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
mm39_v1_chr8_-_27664651_27664680	0.324711	AGGUAGU	ENSMUST00000054212.7|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)	ENSMUST00000033878.14|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)	ENSMUST00000209377.2|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)
mm39_v1_chr2_+_28531239_28531274	0.307104	AGGUAGU	ENSMUST00000028155.12|Tsc1|ENSMUSG00000026812.17|TSC complex subunit 1	ENSMUST00000113869.8|Tsc1|ENSMUSG00000026812.17|TSC complex subunit 1	ENSMUST00000113867.9|Tsc1|ENSMUSG00000026812.17|TSC complex subunit 1
mm39_v1_chr15_+_10177709_10177741	0.293041	AGGUAGU	ENSMUST00000124470.8|Prlr|ENSMUSG00000005268.21|prolactin receptor
mm39_v1_chr13_+_45660905_45660994	0.290514	AGGUAGU	ENSMUST00000000260.13|Gmpr|ENSMUSG00000000253.14|guanosine monophosphate reductase
mm39_v1_chr9_+_27702243_27702299	0.289565	AGGUAGU	ENSMUST00000115243.9|Opcml|ENSMUSG00000062257.14|opioid binding protein/cell adhesion molecule-like
mm39_v1_chrX_+_55655111_55655177	0.255632	AGGUAGU	ENSMUST00000144068.8|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6	ENSMUST00000077741.12|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6	ENSMUST00000114784.4|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm39_v1_chr2_-_152239966_152239997	0.244074	AGGUAGU	ENSMUST00000063332.9|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12	ENSMUST00000182625.2|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12
mm39_v1_chr5_+_53713137_53713176	0.242612	AGGUAGU	ENSMUST00000087360.9|Rbpj|ENSMUSG00000039191.13|recombination signal binding protein for immunoglobulin kappa J region
mm39_v1_chr2_-_153371861_153371907	0.242312	AGGUAGU	ENSMUST00000035346.14|Nol4l|ENSMUSG00000061411.13|nucleolar protein 4-like
mm39_v1_chr4_+_21931290_21931367	0.237996	AGGUAGU	ENSMUST00000029908.8|Faxc|ENSMUSG00000028246.14|failed axon connections homolog
mm39_v1_chr11_+_54329014_54329046	0.235431	AGGUAGU	ENSMUST00000046835.14|Fnip1|ENSMUSG00000035992.16|folliculin interacting protein 1
mm39_v1_chrX_-_13712746_13712826	0.224865	AGGUAGU	ENSMUST00000115436.9|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	ENSMUST00000033321.11|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	ENSMUST00000115438.10|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm39_v1_chr11_+_105480796_105480857	0.224579	AGGUAGU	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr8_-_92039850_92039905	0.211164	AGGUAGU	ENSMUST00000047783.14|Rpgrip1l|ENSMUSG00000033282.15|Rpgrip1-like
mm39_v1_chrX_-_110606766_110606834	0.210496	AGGUAGU	ENSMUST00000113422.9|Hdx|ENSMUSG00000034551.13|highly divergent homeobox	ENSMUST00000038472.7|Hdx|ENSMUSG00000034551.13|highly divergent homeobox
mm39_v1_chr14_-_105414294_105414361	0.176386	AGGUAGU	ENSMUST00000163545.8|Rbm26|ENSMUSG00000022119.16|RNA binding motif protein 26
mm39_v1_chr10_-_63926044_63926076	0.165498	AGGUAGU	ENSMUST00000105439.2|Lrrtm3|ENSMUSG00000042846.9|leucine rich repeat transmembrane neuronal 3
mm39_v1_chr3_+_102965601_102965684	0.163496	AGGUAGU	ENSMUST00000029445.13|Nras|ENSMUSG00000027852.15|neuroblastoma ras oncogene	ENSMUST00000200069.5|Nras|ENSMUSG00000027852.15|neuroblastoma ras oncogene
mm39_v1_chr11_+_44508137_44508169	0.15365	AGGUAGU	ENSMUST00000109268.2|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000101326.10|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000081265.12|Ebf1|ENSMUSG00000057098.15|early B cell factor 1
mm39_v1_chr4_+_6365650_6365688	0.153023	AGGUAGU	ENSMUST00000029912.11|Sdcbp|ENSMUSG00000028249.16|syndecan binding protein	ENSMUST00000103008.12|Sdcbp|ENSMUSG00000028249.16|syndecan binding protein
mm39_v1_chr8_-_84831391_84831426	0.141539	AGGUAGU	ENSMUST00000041367.9|Dcaf15|ENSMUSG00000037103.9|DDB1 and CUL4 associated factor 15	ENSMUST00000210279.2|Dcaf15|ENSMUSG00000037103.9|DDB1 and CUL4 associated factor 15
mm39_v1_chr2_-_37333109_37333210	0.13479	AGGUAGU	ENSMUST00000102789.3|Zbtb26|ENSMUSG00000050714.10|zinc finger and BTB domain containing 26	ENSMUST00000067043.5|Zbtb26|ENSMUSG00000050714.10|zinc finger and BTB domain containing 26	ENSMUST00000112932.2|Zbtb6|ENSMUSG00000066798.4|zinc finger and BTB domain containing 6
mm39_v1_chr11_-_57723502_57723644	0.133628	AGGUAGU	ENSMUST00000160392.9|Hand1|ENSMUSG00000037335.14|heart and neural crest derivatives expressed 1	ENSMUST00000108845.3|Hand1|ENSMUSG00000037335.14|heart and neural crest derivatives expressed 1
mm39_v1_chr2_+_156038562_156038695	0.133514	AGGUAGU	ENSMUST00000037401.10|Phf20|ENSMUSG00000038116.17|PHD finger protein 20
mm39_v1_chr6_-_127128007_127128023	0.129383	AGGUAGU	ENSMUST00000000188.12|Ccnd2|ENSMUSG00000000184.13|cyclin D2
mm39_v1_chr10_-_5872386_5872405	0.121834	AGGUAGU	ENSMUST00000131996.8|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17	ENSMUST00000064225.14|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17
mm39_v1_chr19_+_30007910_30007928	0.119351	AGGUAGU	ENSMUST00000025739.14|Uhrf2|ENSMUSG00000024817.14|ubiquitin-like, containing PHD and RING finger domains 2
mm39_v1_chr6_+_86826470_86826577	0.11339	AGGUAGU	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chr4_-_82777746_82777917	0.112064	AGGUAGU	ENSMUST00000156055.2|Zdhhc21|ENSMUSG00000028403.16|zinc finger, DHHC domain containing 21	ENSMUST00000030110.15|Zdhhc21|ENSMUSG00000028403.16|zinc finger, DHHC domain containing 21
mm39_v1_chr3_+_144998233_144998330	0.108015	AGGUAGU	ENSMUST00000029848.5|Col24a1|ENSMUSG00000028197.5|collagen, type XXIV, alpha 1	ENSMUST00000139001.2|Col24a1|ENSMUSG00000028197.5|collagen, type XXIV, alpha 1
mm39_v1_chr2_+_154278357_154278455	0.0864086	AGGUAGU	ENSMUST00000109725.8|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000099178.10|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000045270.15|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000109724.2|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2
mm39_v1_chr10_-_61219229_61219309	0.0861001	AGGUAGU	ENSMUST00000020289.10|Pald1|ENSMUSG00000020092.10|phosphatase domain containing, paladin 1
mm39_v1_chr18_+_12261798_12261864	0.0847407	AGGUAGU	ENSMUST00000025270.8|Riok3|ENSMUSG00000024404.8|RIO kinase 3
mm39_v1_chr16_-_67417768_67417810	0.0815156	AGGUAGU	ENSMUST00000114292.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2	ENSMUST00000120898.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2
mm39_v1_chr14_-_124914516_124914539	0.0811792	AGGUAGU	ENSMUST00000095529.10|Fgf14|ENSMUSG00000025551.14|fibroblast growth factor 14
mm39_v1_chrX_-_7054952_7054981	0.0689334	AGGUAGU	ENSMUST00000004428.14|Clcn5|ENSMUSG00000004317.15|chloride channel, voltage-sensitive 5
mm39_v1_chr10_-_43416941_43417015	0.0681649	AGGUAGU	ENSMUST00000147196.3|Mtres1|ENSMUSG00000019797.12|mitochondrial transcription rescue factor 1
mm39_v1_chr17_+_34148485_34148560	0.068081	AGGUAGU	ENSMUST00000047503.16|Rgl2|ENSMUSG00000041354.17|ral guanine nucleotide dissociation stimulator-like 2
mm39_v1_chr6_+_92068361_92068371	0.060954	AGGUAGU	ENSMUST00000113460.8|Nr2c2|ENSMUSG00000005893.15|nuclear receptor subfamily 2, group C, member 2
mm39_v1_chr1_+_121358778_121358853	0.0531926	AGGUAGU	ENSMUST00000036025.16|Ccdc93|ENSMUSG00000026339.19|coiled-coil domain containing 93	ENSMUST00000112621.2|Ccdc93|ENSMUSG00000026339.19|coiled-coil domain containing 93
mm39_v1_chr10_+_127512933_127512968	0.052122	AGGUAGU	ENSMUST00000118612.8|Nemp1|ENSMUSG00000040195.12|nuclear envelope integral membrane protein 1	ENSMUST00000048099.5|Nemp1|ENSMUSG00000040195.12|nuclear envelope integral membrane protein 1
mm39_v1_chr12_+_117480099_117480148	0.05046	AGGUAGU	ENSMUST00000109691.4|Rapgef5|ENSMUSG00000041992.10|Rap guanine nucleotide exchange factor (GEF) 5
mm39_v1_chr10_-_23225781_23225817	0.0490153	AGGUAGU	ENSMUST00000092665.12|Eya4|ENSMUSG00000010461.17|EYA transcriptional coactivator and phosphatase 4
mm39_v1_chr5_+_13449276_13449350	0.0431801	AGGUAGU	ENSMUST00000030714.9|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	ENSMUST00000141968.2|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm39_v1_chr16_+_37736776_37736858	0.0377176	AGGUAGU	ENSMUST00000061274.9|Gpr156|ENSMUSG00000046961.9|G protein-coupled receptor 156
mm39_v1_chr5_-_124233812_124233884	0.0302222	AGGUAGU	ENSMUST00000031354.11|Abcb9|ENSMUSG00000029408.14|ATP-binding cassette, sub-family B (MDR/TAP), member 9
mm39_v1_chr12_-_91556761_91556783	0.0227909	AGGUAGU	ENSMUST00000021345.14|Gtf2a1|ENSMUSG00000020962.15|general transcription factor II A, 1
mm39_v1_chrX_-_20928219_20928302	0.0192916	AGGUAGU	ENSMUST00000040628.6|Zfp182|ENSMUSG00000054737.12|zinc finger protein 182	ENSMUST00000115333.9|Zfp182|ENSMUSG00000054737.12|zinc finger protein 182	ENSMUST00000115334.8|Zfp182|ENSMUSG00000054737.12|zinc finger protein 182
mm39_v1_chrX_+_152020744_152020838	0.0149593	AGGUAGU	ENSMUST00000112574.9|Klf8|ENSMUSG00000041649.14|Kruppel-like factor 8
mm39_v1_chr13_+_25240138_25240236	0.0124264	AGGUAGU	ENSMUST00000069614.7|Dcdc2a|ENSMUSG00000035910.16|doublecortin domain containing 2a
mm39_v1_chr11_-_115494692_115494877	0.0060253	AGGUAGU	ENSMUST00000125097.2|Gga3|ENSMUSG00000020740.14|golgi associated, gamma adaptin ear containing, ARF binding protein 3	ENSMUST00000019135.14|Gga3|ENSMUSG00000020740.14|golgi associated, gamma adaptin ear containing, ARF binding protein 3	ENSMUST00000106508.10|Gga3|ENSMUSG00000020740.14|golgi associated, gamma adaptin ear containing, ARF binding protein 3
mm39_v1_chrX_-_160942713_160942728	0.00540151	AGGUAGU	ENSMUST00000087085.10|Nhs|ENSMUSG00000059493.14|NHS actin remodeling regulator
