mm39_v1_chr2_+_71811526_71811631	4.98466	AGUGCAA	ENSMUST00000090826.12|Rapgef4|ENSMUSG00000049044.17|Rap guanine nucleotide exchange factor (GEF) 4	ENSMUST00000102698.10|Rapgef4|ENSMUSG00000049044.17|Rap guanine nucleotide exchange factor (GEF) 4
mm39_v1_chr1_+_132226308_132226370	4.83144	AGUGCAA	ENSMUST00000046071.5|Klhdc8a|ENSMUSG00000042115.5|kelch domain containing 8A
mm39_v1_chr2_+_136555364_136555412	4.58626	AGUGCAA	ENSMUST00000028727.11|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25	ENSMUST00000110098.4|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25
mm39_v1_chr4_-_87148672_87148714	4.5827	AGUGCAA	ENSMUST00000107157.9|Slc24a2|ENSMUSG00000037996.18|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm39_v1_chr10_-_67748461_67748515	4.44773	AGUGCAA	ENSMUST00000064656.8|Zfp365|ENSMUSG00000037855.16|zinc finger protein 365
mm39_v1_chr12_-_72455708_72455828	3.9544	AGUGCAA	ENSMUST00000078505.14|Rtn1|ENSMUSG00000021087.19|reticulon 1
mm39_v1_chr6_+_117988399_117988457	3.80416	AGUGCAA	ENSMUST00000164960.4|Rasgef1a|ENSMUSG00000030134.12|RasGEF domain family, member 1A
mm39_v1_chr2_+_92430043_92430069	3.68581	AGUGCAA	ENSMUST00000065797.7|Chst1|ENSMUSG00000027221.6|carbohydrate sulfotransferase 1
mm39_v1_chr11_-_119438569_119438585	3.65953	AGUGCAA	ENSMUST00000026670.5|Nptx1|ENSMUSG00000025582.5|neuronal pentraxin 1
mm39_v1_chr8_-_72124359_72124416	3.62481	AGUGCAA	ENSMUST00000177517.8|Unc13a|ENSMUSG00000034799.17|unc-13 homolog A	ENSMUST00000030170.15|Unc13a|ENSMUSG00000034799.17|unc-13 homolog A
mm39_v1_chr3_-_115508680_115508721	3.61126	AGUGCAA	ENSMUST00000055676.4|S1pr1|ENSMUSG00000045092.9|sphingosine-1-phosphate receptor 1
mm39_v1_chr7_-_81104423_81104512	3.43898	AGUGCAA	ENSMUST00000178892.3|Cpeb1|ENSMUSG00000025586.18|cytoplasmic polyadenylation element binding protein 1	ENSMUST00000098331.10|Cpeb1|ENSMUSG00000025586.18|cytoplasmic polyadenylation element binding protein 1
mm39_v1_chr10_-_6930376_6930397	3.2844	AGUGCAA	ENSMUST00000105617.8|Ipcef1|ENSMUSG00000064065.16|interaction protein for cytohesin exchange factors 1
mm39_v1_chr18_-_10706701_10706771	2.99921	AGUGCAA	ENSMUST00000002549.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3	ENSMUST00000117726.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3	ENSMUST00000117828.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3
mm39_v1_chr4_+_33924632_33924651	2.97311	AGUGCAA	ENSMUST00000057188.7|Cnr1|ENSMUSG00000044288.7|cannabinoid receptor 1 (brain)
mm39_v1_chrX_-_141173330_141173341	2.88351	AGUGCAA	ENSMUST00000112907.8|Acsl4|ENSMUSG00000031278.13|acyl-CoA synthetase long-chain family member 4
mm39_v1_chr1_+_172168764_172168785	2.80378	AGUGCAA	ENSMUST00000056136.4|Kcnj10|ENSMUSG00000044708.6|potassium inwardly-rectifying channel, subfamily J, member 10
mm39_v1_chr3_+_75981577_75981577	2.75859	AGUGCAA	ENSMUST00000038364.15|Fstl5|ENSMUSG00000034098.15|follistatin-like 5
mm39_v1_chr14_-_31139617_31139634	2.69207	AGUGCAA	ENSMUST00000100730.10|Sh3bp5|ENSMUSG00000021892.15|SH3-domain binding protein 5 (BTK-associated)
mm39_v1_chr11_-_28534260_28534325	2.65912	AGUGCAA	ENSMUST00000093253.10|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A	ENSMUST00000109502.9|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A	ENSMUST00000042534.15|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A
mm39_v1_chr6_+_108190050_108190065	2.63484	AGUGCAA	ENSMUST00000032192.9|Itpr1|ENSMUSG00000030102.12|inositol 1,4,5-trisphosphate receptor 1
mm39_v1_chrX_+_97192356_97192388	2.59969	AGUGCAA	ENSMUST00000052837.9|Ar|ENSMUSG00000046532.9|androgen receptor
mm39_v1_chr7_+_100122192_100122205	2.54174	AGUGCAA	ENSMUST00000032958.14|Ucp3|ENSMUSG00000032942.15|uncoupling protein 3 (mitochondrial, proton carrier)	ENSMUST00000107059.2|Ucp3|ENSMUSG00000032942.15|uncoupling protein 3 (mitochondrial, proton carrier)
mm39_v1_chr2_+_118493713_118493809	2.52778	AGUGCAA	ENSMUST00000099557.10|Pak6|ENSMUSG00000074923.11|p21 (RAC1) activated kinase 6
mm39_v1_chrX_+_98864627_98864627	2.46585	AGUGCAA	ENSMUST00000096363.3|Tmem28|ENSMUSG00000071719.3|transmembrane protein 28
mm39_v1_chr4_-_53159885_53159900	2.39955	AGUGCAA	ENSMUST00000030010.4|Abca1|ENSMUSG00000015243.5|ATP-binding cassette, sub-family A (ABC1), member 1
mm39_v1_chr9_-_107109108_107109117	2.32283	AGUGCAA	ENSMUST00000044532.11|Dock3|ENSMUSG00000039716.13|dedicator of cyto-kinesis 3
mm39_v1_chr10_+_106306122_106306228	2.32239	AGUGCAA	ENSMUST00000029404.17|Ppfia2|ENSMUSG00000053825.16|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	ENSMUST00000217854.2|Ppfia2|ENSMUSG00000053825.16|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm39_v1_chr2_-_151474391_151474519	2.31815	AGUGCAA	ENSMUST00000137936.2|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000146172.8|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000094456.10|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000148755.8|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000109875.8|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000028951.14|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000109877.10|Snph|ENSMUSG00000027457.16|syntaphilin
mm39_v1_chr18_-_35348049_35348092	2.3117	AGUGCAA	ENSMUST00000091636.5|Lrrtm2|ENSMUSG00000071862.4|leucine rich repeat transmembrane neuronal 2	ENSMUST00000236680.2|Lrrtm2|ENSMUSG00000071862.4|leucine rich repeat transmembrane neuronal 2
mm39_v1_chr18_+_4634878_4634974	2.29727	AGUGCAA	ENSMUST00000037029.7|Jcad|ENSMUSG00000033960.7|junctional cadherin 5 associated
mm39_v1_chr11_+_87017878_87017917	2.27447	AGUGCAA	ENSMUST00000041282.13|Trim37|ENSMUSG00000018548.16|tripartite motif-containing 37
mm39_v1_chr2_+_106523532_106523624	2.27154	AGUGCAA	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chr14_+_103887644_103887679	2.22884	AGUGCAA	ENSMUST00000069443.14|Slain1|ENSMUSG00000055717.14|SLAIN motif family, member 1
mm39_v1_chr7_+_99876515_99876606	2.17914	AGUGCAA	ENSMUST00000084935.11|Pgm2l1|ENSMUSG00000030729.18|phosphoglucomutase 2-like 1
mm39_v1_chr10_+_39245746_39245808	2.16094	AGUGCAA	ENSMUST00000063091.13|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000099967.10|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000126486.8|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene
mm39_v1_chrX_+_149981074_149981136	2.15038	AGUGCAA	ENSMUST00000184730.8|Wnk3|ENSMUSG00000041245.14|WNK lysine deficient protein kinase 3	ENSMUST00000184392.8|Wnk3|ENSMUSG00000041245.14|WNK lysine deficient protein kinase 3	ENSMUST00000096285.5|Wnk3|ENSMUSG00000041245.14|WNK lysine deficient protein kinase 3
mm39_v1_chr16_-_42160957_42161014	2.04454	AGUGCAA	ENSMUST00000102817.5|Gap43|ENSMUSG00000047261.10|growth associated protein 43
mm39_v1_chr14_-_26693189_26693189	2.02705	AGUGCAA	ENSMUST00000036570.5|Appl1|ENSMUSG00000040760.12|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm39_v1_chr4_+_107659474_107659637	2.02225	AGUGCAA	ENSMUST00000106733.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238651.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000030356.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238421.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000126573.8|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238569.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000106732.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm39_v1_chr6_-_97125817_97125896	2.00339	AGUGCAA	ENSMUST00000204331.3|Eogt|ENSMUSG00000035245.13|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	ENSMUST00000142116.2|Eogt|ENSMUSG00000035245.13|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	ENSMUST00000113387.8|Eogt|ENSMUSG00000035245.13|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase
mm39_v1_chr16_+_32882882_32882919	1.97406	AGUGCAA	ENSMUST00000023497.3|Lmln|ENSMUSG00000022802.3|leishmanolysin-like (metallopeptidase M8 family)
mm39_v1_chr4_+_102112189_102112200	1.91426	AGUGCAA	ENSMUST00000106908.9|Pde4b|ENSMUSG00000028525.17|phosphodiesterase 4B, cAMP specific
mm39_v1_chr5_-_140634773_140634807	1.91301	AGUGCAA	ENSMUST00000197452.5|Ttyh3|ENSMUSG00000036565.8|tweety family member 3	ENSMUST00000042661.8|Ttyh3|ENSMUSG00000036565.8|tweety family member 3
mm39_v1_chr14_-_67106037_67106137	1.89647	AGUGCAA	ENSMUST00000022629.9|Dpysl2|ENSMUSG00000022048.9|dihydropyrimidinase-like 2
mm39_v1_chr2_+_116951855_116951880	1.83433	AGUGCAA	ENSMUST00000028829.13|Spred1|ENSMUSG00000027351.15|sprouty protein with EVH-1 domain 1, related sequence
mm39_v1_chr1_-_46893206_46893240	1.82559	AGUGCAA	ENSMUST00000027131.6|Slc39a10|ENSMUSG00000025986.7|solute carrier family 39 (zinc transporter), member 10
mm39_v1_chr2_+_156038562_156038695	1.81778	AGUGCAA	ENSMUST00000037401.10|Phf20|ENSMUSG00000038116.17|PHD finger protein 20
mm39_v1_chr12_+_81073573_81073602	1.8027	AGUGCAA	ENSMUST00000110347.9|Smoc1|ENSMUSG00000021136.14|SPARC related  modular calcium binding 1	ENSMUST00000021564.11|Smoc1|ENSMUSG00000021136.14|SPARC related  modular calcium binding 1	ENSMUST00000129362.2|Smoc1|ENSMUSG00000021136.14|SPARC related  modular calcium binding 1
mm39_v1_chr12_-_67269323_67269354	1.7978	AGUGCAA	ENSMUST00000037181.16|Mdga2|ENSMUSG00000034912.19|MAM domain containing glycosylphosphatidylinositol anchor 2
mm39_v1_chr6_-_145811028_145811085	1.77015	AGUGCAA	ENSMUST00000111703.2|Bhlhe41|ENSMUSG00000030256.12|basic helix-loop-helix family, member e41
mm39_v1_chr4_+_6191084_6191122	1.76928	AGUGCAA	ENSMUST00000029907.6|Ubxn2b|ENSMUSG00000028243.6|UBX domain protein 2B
mm39_v1_chr18_-_23174698_23174729	1.75762	AGUGCAA	ENSMUST00000097651.10|Nol4|ENSMUSG00000041923.16|nucleolar protein 4
mm39_v1_chr3_-_125732255_125732268	1.75253	AGUGCAA	ENSMUST00000057944.12|Ugt8a|ENSMUSG00000032854.13|UDP galactosyltransferase 8A
mm39_v1_chr2_+_107120934_107121005	1.7435	AGUGCAA	ENSMUST00000037012.3|Kcna4|ENSMUSG00000042604.6|potassium voltage-gated channel, shaker-related subfamily, member 4
mm39_v1_chr3_-_33136153_33136217	1.74265	AGUGCAA	ENSMUST00000108225.10|Pex5l|ENSMUSG00000027674.17|peroxisomal biogenesis factor 5-like
mm39_v1_chr12_+_29578354_29578468	1.71258	AGUGCAA	ENSMUST00000218583.2|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like	ENSMUST00000049784.17|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like
mm39_v1_chr1_-_126758369_126758515	1.70724	AGUGCAA	ENSMUST00000112583.8|Nckap5|ENSMUSG00000049690.16|NCK-associated protein 5	ENSMUST00000094609.10|Nckap5|ENSMUSG00000049690.16|NCK-associated protein 5
mm39_v1_chr1_-_43866910_43866960	1.70611	AGUGCAA	ENSMUST00000153317.6|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000128261.2|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000126008.8|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000139451.8|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1
mm39_v1_chr11_-_61745843_61745899	1.6986	AGUGCAA	ENSMUST00000004920.4|Ulk2|ENSMUSG00000004798.15|unc-51 like kinase 2
mm39_v1_chr17_-_45860580_45860603	1.64574	AGUGCAA	ENSMUST00000180252.3|Tmem151b|ENSMUSG00000096847.3|transmembrane protein 151B
mm39_v1_chr9_-_42383494_42383561	1.6426	AGUGCAA	ENSMUST00000128959.8|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like	ENSMUST00000066148.12|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like	ENSMUST00000138506.8|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like
mm39_v1_chr1_+_115612458_115612486	1.63942	AGUGCAA	ENSMUST00000043725.9|Cntnap5a|ENSMUSG00000070695.5|contactin associated protein-like 5A
mm39_v1_chr10_-_78188153_78188294	1.63754	AGUGCAA	ENSMUST00000001240.12|Agpat3|ENSMUSG00000001211.16|1-acylglycerol-3-phosphate O-acyltransferase 3
mm39_v1_chr4_+_109137462_109137513	1.62686	AGUGCAA	ENSMUST00000102729.10|Eps15|ENSMUSG00000028552.14|epidermal growth factor receptor pathway substrate 15
mm39_v1_chr2_+_134627987_134628090	1.61651	AGUGCAA	ENSMUST00000131552.5|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1	ENSMUST00000110116.8|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1
mm39_v1_chr17_+_87415049_87415129	1.59509	AGUGCAA	ENSMUST00000041369.8|Socs5|ENSMUSG00000037104.10|suppressor of cytokine signaling 5	ENSMUST00000234803.2|Socs5|ENSMUSG00000037104.10|suppressor of cytokine signaling 5
mm39_v1_chr11_+_7013422_7013489	1.56623	AGUGCAA	ENSMUST00000020706.5|Adcy1|ENSMUSG00000020431.6|adenylate cyclase 1
mm39_v1_chr14_+_30547541_30547595	1.52912	AGUGCAA	ENSMUST00000006701.8|Stimate|ENSMUSG00000006526.14|STIM activating enhancer
mm39_v1_chr5_+_114706077_114706077	1.48523	AGUGCAA	ENSMUST00000043650.8|Fam222a|ENSMUSG00000041930.8|family with sequence similarity 222, member A
mm39_v1_chr4_-_126323291_126323349	1.46968	AGUGCAA	ENSMUST00000069097.13|Ago3|ENSMUSG00000028842.16|argonaute RISC catalytic subunit 3
mm39_v1_chrX_-_121307036_121307145	1.45903	AGUGCAA	ENSMUST00000079490.6|Nap1l3|ENSMUSG00000055733.7|nucleosome assembly protein 1-like 3
mm39_v1_chr6_-_148797648_148797735	1.45631	AGUGCAA	ENSMUST00000072324.12|Caprin2|ENSMUSG00000030309.17|caprin family member 2	ENSMUST00000111569.9|Caprin2|ENSMUSG00000030309.17|caprin family member 2
mm39_v1_chr4_+_152181155_152181176	1.453	AGUGCAA	ENSMUST00000105661.10|Plekhg5|ENSMUSG00000039713.18|pleckstrin homology domain containing, family G (with RhoGef domain) member 5	ENSMUST00000084115.4|Plekhg5|ENSMUSG00000039713.18|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
mm39_v1_chr14_+_111912529_111912556	1.45121	AGUGCAA	ENSMUST00000042767.9|Slitrk5|ENSMUSG00000033214.11|SLIT and NTRK-like family, member 5
mm39_v1_chr5_-_124465946_124466035	1.44734	AGUGCAA	ENSMUST00000031344.13|Mphosph9|ENSMUSG00000038126.18|M-phase phosphoprotein 9
mm39_v1_chr2_+_80469142_80469216	1.44485	AGUGCAA	ENSMUST00000028382.13|Nup35|ENSMUSG00000026999.15|nucleoporin 35	ENSMUST00000124377.2|Nup35|ENSMUSG00000026999.15|nucleoporin 35
mm39_v1_chr18_+_5591864_5591902	1.42493	AGUGCAA	ENSMUST00000025081.13|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1	ENSMUST00000159390.8|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1
mm39_v1_chr17_-_66826661_66826724	1.41894	AGUGCAA	ENSMUST00000167962.2|Rab12|ENSMUSG00000023460.14|RAB12, member RAS oncogene family	ENSMUST00000070538.12|Rab12|ENSMUSG00000023460.14|RAB12, member RAS oncogene family
mm39_v1_chr8_+_129085719_129085787	1.41615	AGUGCAA	ENSMUST00000026917.10|Nrp1|ENSMUSG00000025810.10|neuropilin 1
mm39_v1_chr15_-_102425241_102425499	1.41276	AGUGCAA	ENSMUST00000169162.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000023812.10|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000165174.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000169367.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000169377.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12
mm39_v1_chr12_+_84161095_84161165	1.40925	AGUGCAA	ENSMUST00000123491.8|Dnal1|ENSMUSG00000042523.13|dynein, axonemal, light chain 1	ENSMUST00000046340.9|Dnal1|ENSMUSG00000042523.13|dynein, axonemal, light chain 1	ENSMUST00000136159.2|Dnal1|ENSMUSG00000042523.13|dynein, axonemal, light chain 1
mm39_v1_chr1_+_6557455_6557563	1.39659	AGUGCAA	ENSMUST00000140079.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18	ENSMUST00000131494.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18
mm39_v1_chr11_+_52122836_52122873	1.37519	AGUGCAA	ENSMUST00000037324.12|Skp1|ENSMUSG00000036309.15|S-phase kinase-associated protein 1	ENSMUST00000166537.8|Skp1|ENSMUSG00000036309.15|S-phase kinase-associated protein 1
mm39_v1_chr14_-_63781381_63781440	1.37429	AGUGCAA	ENSMUST00000058679.7|Mtmr9|ENSMUSG00000035078.7|myotubularin related protein 9
mm39_v1_chr2_-_180776920_180777023	1.3729	AGUGCAA	ENSMUST00000197015.5|Kcnq2|ENSMUSG00000016346.18|potassium voltage-gated channel, subfamily Q, member 2	ENSMUST00000103050.10|Kcnq2|ENSMUSG00000016346.18|potassium voltage-gated channel, subfamily Q, member 2	ENSMUST00000081528.13|Kcnq2|ENSMUSG00000016346.18|potassium voltage-gated channel, subfamily Q, member 2	ENSMUST00000049792.15|Kcnq2|ENSMUSG00000016346.18|potassium voltage-gated channel, subfamily Q, member 2	ENSMUST00000103048.10|Kcnq2|ENSMUSG00000016346.18|potassium voltage-gated channel, subfamily Q, member 2	ENSMUST00000103047.10|Kcnq2|ENSMUSG00000016346.18|potassium voltage-gated channel, subfamily Q, member 2	ENSMUST00000149964.9|Kcnq2|ENSMUSG00000016346.18|potassium voltage-gated channel, subfamily Q, member 2
mm39_v1_chr11_-_90281721_90281753	1.37173	AGUGCAA	ENSMUST00000004051.8|Hlf|ENSMUSG00000003949.17|hepatic leukemia factor
mm39_v1_chr11_-_106050927_106050994	1.35214	AGUGCAA	ENSMUST00000045923.10|Limd2|ENSMUSG00000040699.14|LIM domain containing 2
mm39_v1_chr6_+_86826470_86826577	1.35018	AGUGCAA	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chrX_+_92330102_92330128	1.32123	AGUGCAA	ENSMUST00000046565.13|Arx|ENSMUSG00000035277.16|aristaless related homeobox	ENSMUST00000113947.6|Arx|ENSMUSG00000035277.16|aristaless related homeobox
mm39_v1_chr11_+_44409775_44409827	1.31073	AGUGCAA	ENSMUST00000019333.10|Rnf145|ENSMUSG00000019189.14|ring finger protein 145
mm39_v1_chr3_+_152052102_152052172	1.29642	AGUGCAA	ENSMUST00000117492.9|Usp33|ENSMUSG00000025437.16|ubiquitin specific peptidase 33	ENSMUST00000026507.13|Usp33|ENSMUSG00000025437.16|ubiquitin specific peptidase 33	ENSMUST00000197748.5|Usp33|ENSMUSG00000025437.16|ubiquitin specific peptidase 33
mm39_v1_chr10_+_128247598_128247627	1.24384	AGUGCAA	ENSMUST00000096386.13|Rnf41|ENSMUSG00000025373.15|ring finger protein 41
mm39_v1_chr2_-_23462052_23462124	1.23225	AGUGCAA	ENSMUST00000132484.7|Spopl|ENSMUSG00000026771.15|speckle-type BTB/POZ protein-like
mm39_v1_chr6_+_143112936_143113026	1.21089	AGUGCAA	ENSMUST00000204947.3|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1	ENSMUST00000032413.7|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1	ENSMUST00000205256.2|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1
mm39_v1_chr3_+_107008867_107008883	1.20618	AGUGCAA	ENSMUST00000038695.6|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr2_+_28531239_28531274	1.19657	AGUGCAA	ENSMUST00000028155.12|Tsc1|ENSMUSG00000026812.17|TSC complex subunit 1	ENSMUST00000113869.8|Tsc1|ENSMUSG00000026812.17|TSC complex subunit 1	ENSMUST00000113867.9|Tsc1|ENSMUSG00000026812.17|TSC complex subunit 1
mm39_v1_chr5_+_118307754_118307813	1.17801	AGUGCAA	ENSMUST00000054836.7|Hrk|ENSMUSG00000046607.7|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm39_v1_chr17_+_28361115_28361167	1.17033	AGUGCAA	ENSMUST00000043503.11|Scube3|ENSMUSG00000038677.15|signal peptide, CUB domain, EGF-like 3
mm39_v1_chr4_+_32982981_32983155	1.15391	AGUGCAA	ENSMUST00000098190.10|Rragd|ENSMUSG00000028278.15|Ras-related GTP binding D	ENSMUST00000029946.14|Rragd|ENSMUSG00000028278.15|Ras-related GTP binding D
mm39_v1_chr14_-_78774201_78774292	1.15315	AGUGCAA	ENSMUST00000123853.9|Akap11|ENSMUSG00000022016.18|A kinase (PRKA) anchor protein 11
mm39_v1_chr1_+_180158035_180158058	1.14509	AGUGCAA	ENSMUST00000070181.7|Itpkb|ENSMUSG00000038855.11|inositol 1,4,5-trisphosphate 3-kinase B
mm39_v1_chr15_-_102044658_102044669	1.14329	AGUGCAA	ENSMUST00000154032.2|Spryd3|ENSMUSG00000036966.16|SPRY domain containing 3
mm39_v1_chr2_-_58247764_58247907	1.12433	AGUGCAA	ENSMUST00000112608.9|Acvr1c|ENSMUSG00000026834.14|activin A receptor, type IC	ENSMUST00000112607.3|Acvr1c|ENSMUSG00000026834.14|activin A receptor, type IC	ENSMUST00000028178.14|Acvr1c|ENSMUSG00000026834.14|activin A receptor, type IC
mm39_v1_chr8_-_37081091_37081102	1.11151	AGUGCAA	ENSMUST00000033923.14|Dlc1|ENSMUSG00000031523.17|deleted in liver cancer 1
mm39_v1_chr2_+_76236870_76236936	1.10544	AGUGCAA	ENSMUST00000077972.11|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6	ENSMUST00000111929.8|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6	ENSMUST00000111930.9|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6
mm39_v1_chrX_-_103457431_103457463	1.09112	AGUGCAA	ENSMUST00000033695.6|Abcb7|ENSMUSG00000031333.8|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm39_v1_chr2_-_65397809_65397839	1.09078	AGUGCAA	ENSMUST00000066432.12|Scn3a|ENSMUSG00000057182.16|sodium channel, voltage-gated, type III, alpha
mm39_v1_chr16_-_17540685_17540800	1.08677	AGUGCAA	ENSMUST00000232163.2|Med15|ENSMUSG00000012114.18|mediator complex subunit 15	ENSMUST00000232202.2|Med15|ENSMUSG00000012114.18|mediator complex subunit 15	ENSMUST00000080936.14|Med15|ENSMUSG00000012114.18|mediator complex subunit 15	ENSMUST00000232645.2|Med15|ENSMUSG00000012114.18|mediator complex subunit 15	ENSMUST00000232431.2|Med15|ENSMUSG00000012114.18|mediator complex subunit 15
mm39_v1_chr13_+_76532470_76532654	1.08135	AGUGCAA	ENSMUST00000125209.8|Mctp1|ENSMUSG00000021596.17|multiple C2 domains, transmembrane 1
mm39_v1_chr2_+_14078896_14078954	1.07987	AGUGCAA	ENSMUST00000102960.11|Stam|ENSMUSG00000026718.18|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
mm39_v1_chr10_-_25076008_25076076	1.07436	AGUGCAA	ENSMUST00000100012.3|Akap7|ENSMUSG00000039166.17|A kinase (PRKA) anchor protein 7
mm39_v1_chr6_+_4600839_4600960	1.07364	AGUGCAA	ENSMUST00000015333.12|Casd1|ENSMUSG00000015189.13|CAS1 domain containing 1	ENSMUST00000181734.8|Casd1|ENSMUSG00000015189.13|CAS1 domain containing 1
mm39_v1_chr16_-_9812410_9812446	1.06919	AGUGCAA	ENSMUST00000115835.8|Grin2a|ENSMUSG00000059003.13|glutamate receptor, ionotropic, NMDA2A (epsilon 1)
mm39_v1_chrX_+_65692924_65693001	1.0491	AGUGCAA	ENSMUST00000166241.2|Slitrk2|ENSMUSG00000036790.6|SLIT and NTRK-like family, member 2
mm39_v1_chr1_-_9770434_9770554	1.04445	AGUGCAA	ENSMUST00000088658.11|Mybl1|ENSMUSG00000025912.17|myeloblastosis oncogene-like 1
mm39_v1_chr1_-_160958998_160959081	1.01211	AGUGCAA	ENSMUST00000111611.8|Klhl20|ENSMUSG00000026705.17|kelch-like 20
mm39_v1_chr2_+_22958179_22958253	0.995059	AGUGCAA	ENSMUST00000227663.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000028121.15|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000227809.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000144088.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5
mm39_v1_chr17_+_44389704_44389741	0.989182	AGUGCAA	ENSMUST00000154166.8|Enpp5|ENSMUSG00000023960.14|ectonucleotide pyrophosphatase/phosphodiesterase 5	ENSMUST00000024756.5|Enpp5|ENSMUSG00000023960.14|ectonucleotide pyrophosphatase/phosphodiesterase 5
mm39_v1_chr8_-_47805383_47805401	0.978439	AGUGCAA	ENSMUST00000110367.10|Stox2|ENSMUSG00000038143.17|storkhead box 2
mm39_v1_chr3_+_55019502_55019592	0.976341	AGUGCAA	ENSMUST00000044116.14|Spg20|ENSMUSG00000036580.16|spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	ENSMUST00000107971.9|Spg20|ENSMUSG00000036580.16|spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	ENSMUST00000118118.8|Spg20|ENSMUSG00000036580.16|spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)
mm39_v1_chr8_-_17585263_17585335	0.970771	AGUGCAA	ENSMUST00000082104.7|Csmd1|ENSMUSG00000060924.16|CUB and Sushi multiple domains 1
mm39_v1_chr17_+_47816042_47816057	0.969629	AGUGCAA	ENSMUST00000183044.8|Ccnd3|ENSMUSG00000034165.17|cyclin D3	ENSMUST00000037333.17|Ccnd3|ENSMUSG00000034165.17|cyclin D3
mm39_v1_chr17_-_17845293_17845329	0.959251	AGUGCAA	ENSMUST00000041047.4|Lnpep|ENSMUSG00000023845.8|leucyl/cystinyl aminopeptidase
mm39_v1_chr3_+_34074048_34074092	0.945203	AGUGCAA	ENSMUST00000001620.13|Fxr1|ENSMUSG00000027680.16|fragile X mental retardation gene 1, autosomal homolog
mm39_v1_chr8_-_26244279_26244308	0.941476	AGUGCAA	ENSMUST00000033975.9|Ddhd2|ENSMUSG00000061313.11|DDHD domain containing 2
mm39_v1_chr5_-_33011530_33011600	0.934918	AGUGCAA	ENSMUST00000130134.3|Prr14l|ENSMUSG00000054280.15|proline rich 14-like	ENSMUST00000120129.9|Prr14l|ENSMUSG00000054280.15|proline rich 14-like
mm39_v1_chr13_+_64309675_64309729	0.922865	AGUGCAA	ENSMUST00000021929.10|Habp4|ENSMUSG00000021476.10|hyaluronic acid binding protein 4
mm39_v1_chr3_-_94490023_94490077	0.899781	AGUGCAA	ENSMUST00000029783.16|Snx27|ENSMUSG00000028136.16|sorting nexin family member 27
mm39_v1_chr12_-_119202527_119202599	0.884097	AGUGCAA	ENSMUST00000026360.9|Itgb8|ENSMUSG00000025321.15|integrin beta 8
mm39_v1_chr11_-_86648309_86648399	0.88404	AGUGCAA	ENSMUST00000060766.16|Cltc|ENSMUSG00000047126.18|clathrin, heavy polypeptide (Hc)	ENSMUST00000103186.11|Cltc|ENSMUSG00000047126.18|clathrin, heavy polypeptide (Hc)
mm39_v1_chr9_+_53448322_53448374	0.847371	AGUGCAA	ENSMUST00000035850.8|Npat|ENSMUSG00000033054.8|nuclear protein in the AT region
mm39_v1_chr18_+_77273510_77273575	0.83259	AGUGCAA	ENSMUST00000075290.8|St8sia5|ENSMUSG00000025425.19|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	ENSMUST00000079618.11|St8sia5|ENSMUSG00000025425.19|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm39_v1_chr2_+_91287846_91287894	0.806789	AGUGCAA	ENSMUST00000028689.4|Lrp4|ENSMUSG00000027253.16|low density lipoprotein receptor-related protein 4
mm39_v1_chr8_+_89423645_89423705	0.805922	AGUGCAA	ENSMUST00000043526.15|Cyld|ENSMUSG00000036712.16|CYLD lysine 63 deubiquitinase	ENSMUST00000211554.2|Cyld|ENSMUSG00000036712.16|CYLD lysine 63 deubiquitinase	ENSMUST00000209532.2|Cyld|ENSMUSG00000036712.16|CYLD lysine 63 deubiquitinase	ENSMUST00000209559.2|Cyld|ENSMUSG00000036712.16|CYLD lysine 63 deubiquitinase
mm39_v1_chr3_-_132655954_132656052	0.795652	AGUGCAA	ENSMUST00000042744.16|Npnt|ENSMUSG00000040998.19|nephronectin	ENSMUST00000117811.8|Npnt|ENSMUSG00000040998.19|nephronectin
mm39_v1_chr15_-_39807081_39807200	0.790265	AGUGCAA	ENSMUST00000022916.13|Lrp12|ENSMUSG00000022305.14|low density lipoprotein-related protein 12
mm39_v1_chr9_+_58536386_58536393	0.777048	AGUGCAA	ENSMUST00000176250.2|Nptn|ENSMUSG00000032336.18|neuroplastin
mm39_v1_chr13_+_55840888_55840964	0.776487	AGUGCAA	ENSMUST00000057844.10|B230219D22Rik|ENSMUSG00000045767.10|RIKEN cDNA B230219D22 gene
mm39_v1_chr4_+_137321451_137321585	0.764423	AGUGCAA	ENSMUST00000105840.8|Usp48|ENSMUSG00000043411.16|ubiquitin specific peptidase 48	ENSMUST00000105839.8|Usp48|ENSMUSG00000043411.16|ubiquitin specific peptidase 48	ENSMUST00000055131.13|Usp48|ENSMUSG00000043411.16|ubiquitin specific peptidase 48	ENSMUST00000105838.8|Usp48|ENSMUSG00000043411.16|ubiquitin specific peptidase 48
mm39_v1_chr18_+_68066328_68066378	0.757184	AGUGCAA	ENSMUST00000063775.5|Ldlrad4|ENSMUSG00000024544.10|low density lipoprotein receptor class A domain containing 4
mm39_v1_chr17_-_87754282_87754363	0.748793	AGUGCAA	ENSMUST00000234406.2|Calm2|ENSMUSG00000036438.15|calmodulin 2	ENSMUST00000040440.7|Calm2|ENSMUSG00000036438.15|calmodulin 2
mm39_v1_chr2_-_167191087_167191150	0.746084	AGUGCAA	ENSMUST00000109221.9|B4galt5|ENSMUSG00000017929.14|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5
mm39_v1_chr11_+_69656725_69656752	0.740711	AGUGCAA	ENSMUST00000108640.8|Zbtb4|ENSMUSG00000018750.15|zinc finger and BTB domain containing 4	ENSMUST00000108639.8|Zbtb4|ENSMUSG00000018750.15|zinc finger and BTB domain containing 4
mm39_v1_chrX_+_72386220_72386237	0.734052	AGUGCAA	ENSMUST00000114499.8|Zfp275|ENSMUSG00000031365.14|zinc finger protein 275	ENSMUST00000033731.4|Zfp275|ENSMUSG00000031365.14|zinc finger protein 275
mm39_v1_chr2_+_130748380_130748421	0.733791	AGUGCAA	ENSMUST00000028781.9|Atrn|ENSMUSG00000027312.15|attractin
mm39_v1_chr16_-_74208180_74208314	0.709597	AGUGCAA	ENSMUST00000117200.8|Robo2|ENSMUSG00000052516.20|roundabout guidance receptor 2
mm39_v1_chr18_-_77652820_77652858	0.705585	AGUGCAA	ENSMUST00000026494.14|Rnf165|ENSMUSG00000025427.16|ring finger protein 165	ENSMUST00000182024.2|Rnf165|ENSMUSG00000025427.16|ring finger protein 165
mm39_v1_chr11_+_87651359_87651413	0.692014	AGUGCAA	ENSMUST00000039627.12|Tspoap1|ENSMUSG00000034156.17|TSPO associated protein 1	ENSMUST00000100644.10|Tspoap1|ENSMUSG00000034156.17|TSPO associated protein 1
mm39_v1_chr8_-_40964704_40964797	0.689282	AGUGCAA	ENSMUST00000135269.8|Cnot7|ENSMUSG00000031601.17|CCR4-NOT transcription complex, subunit 7	ENSMUST00000034012.10|Cnot7|ENSMUSG00000031601.17|CCR4-NOT transcription complex, subunit 7
mm39_v1_chr17_+_93506590_93506601	0.686416	AGUGCAA	ENSMUST00000064775.8|Adcyap1|ENSMUSG00000024256.8|adenylate cyclase activating polypeptide 1
mm39_v1_chr19_+_44919585_44919613	0.679309	AGUGCAA	ENSMUST00000096053.5|Slf2|ENSMUSG00000036097.9|SMC5-SMC6 complex localization factor 2
mm39_v1_chr1_-_54233207_54233207	0.677559	AGUGCAA	ENSMUST00000120904.8|Hecw2|ENSMUSG00000042807.16|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm39_v1_chr5_+_121535999_121536072	0.6676	AGUGCAA	ENSMUST00000042163.15|Naa25|ENSMUSG00000042719.18|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm39_v1_chr10_+_60113449_60113546	0.666858	AGUGCAA	ENSMUST00000105465.8|Psap|ENSMUSG00000004207.15|prosaposin	ENSMUST00000179238.8|Psap|ENSMUSG00000004207.15|prosaposin	ENSMUST00000177779.8|Psap|ENSMUSG00000004207.15|prosaposin	ENSMUST00000004316.15|Psap|ENSMUSG00000004207.15|prosaposin
mm39_v1_chr7_+_44813363_44813448	0.658482	AGUGCAA	ENSMUST00000085374.7|Slc17a7|ENSMUSG00000070570.6|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	ENSMUST00000209634.2|Slc17a7|ENSMUSG00000070570.6|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm39_v1_chr11_-_87878301_87878364	0.65474	AGUGCAA	ENSMUST00000020775.9|Dynll2|ENSMUSG00000020483.15|dynein light chain LC8-type 2
mm39_v1_chr18_-_53877579_53877710	0.65338	AGUGCAA	ENSMUST00000049811.8|Cep120|ENSMUSG00000048799.9|centrosomal protein 120	ENSMUST00000237062.2|Cep120|ENSMUSG00000048799.9|centrosomal protein 120
mm39_v1_chr14_+_5894220_5894254	0.646748	AGUGCAA	ENSMUST00000063750.8|Rarb|ENSMUSG00000017491.10|retinoic acid receptor, beta
mm39_v1_chr3_-_119576911_119577037	0.644522	AGUGCAA	ENSMUST00000197464.5|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000198403.2|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000029780.12|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2
mm39_v1_chr6_-_59001455_59001534	0.643778	AGUGCAA	ENSMUST00000089860.12|Fam13a|ENSMUSG00000037709.14|family with sequence similarity 13, member A
mm39_v1_chr17_-_66756710_66756753	0.64339	AGUGCAA	ENSMUST00000086693.12|Mtcl1|ENSMUSG00000052105.18|microtubule crosslinking factor 1	ENSMUST00000097291.10|Mtcl1|ENSMUSG00000052105.18|microtubule crosslinking factor 1
mm39_v1_chr1_-_143652711_143652806	0.63305	AGUGCAA	ENSMUST00000159879.2|Ro60|ENSMUSG00000018199.10|Ro60, Y RNA binding protein
mm39_v1_chr10_-_71121083_71121094	0.623403	AGUGCAA	ENSMUST00000020085.7|Ube2d1|ENSMUSG00000019927.7|ubiquitin-conjugating enzyme E2D 1
mm39_v1_chr7_-_133826817_133826865	0.617492	AGUGCAA	ENSMUST00000067680.11|Adam12|ENSMUSG00000054555.12|a disintegrin and metallopeptidase domain 12 (meltrin alpha)
mm39_v1_chr16_+_51851588_51851705	0.616101	AGUGCAA	ENSMUST00000114471.3|Cblb|ENSMUSG00000022637.12|Casitas B-lineage lymphoma b
mm39_v1_chr17_+_73414977_73415075	0.614096	AGUGCAA	ENSMUST00000130574.4|Lclat1|ENSMUSG00000054469.15|lysocardiolipin acyltransferase 1	ENSMUST00000149064.9|Lclat1|ENSMUSG00000054469.15|lysocardiolipin acyltransferase 1	ENSMUST00000067545.8|Lclat1|ENSMUSG00000054469.15|lysocardiolipin acyltransferase 1
mm39_v1_chr1_-_111792599_111792663	0.60971	AGUGCAA	ENSMUST00000035462.7|Dsel|ENSMUSG00000038702.7|dermatan sulfate epimerase-like
mm39_v1_chr4_-_108690805_108690827	0.608585	AGUGCAA	ENSMUST00000102742.11|Btf3l4|ENSMUSG00000028568.17|basic transcription factor 3-like 4
mm39_v1_chr6_+_49296208_49296308	0.602457	AGUGCAA	ENSMUST00000055559.8|Ccdc126|ENSMUSG00000050786.9|coiled-coil domain containing 126	ENSMUST00000114491.2|Ccdc126|ENSMUSG00000050786.9|coiled-coil domain containing 126
mm39_v1_chr8_+_112263255_112263272	0.59938	AGUGCAA	ENSMUST00000171182.8|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1	ENSMUST00000168428.8|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1
mm39_v1_chr6_-_29212239_29212292	0.593396	AGUGCAA	ENSMUST00000160878.8|Impdh1|ENSMUSG00000003500.14|inosine monophosphate dehydrogenase 1
mm39_v1_chr11_-_74615496_74615530	0.589541	AGUGCAA	ENSMUST00000021091.15|Pafah1b1|ENSMUSG00000020745.16|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm39_v1_chr11_+_97554192_97554240	0.584356	AGUGCAA	ENSMUST00000044730.12|Mllt6|ENSMUSG00000038437.12|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6
mm39_v1_chr1_+_82817170_82817239	0.58059	AGUGCAA	ENSMUST00000189220.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000113444.8|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr19_+_3817396_3817523	0.572888	AGUGCAA	ENSMUST00000052699.13|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113974.11|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113972.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113973.8|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113977.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113968.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B
mm39_v1_chr14_+_30437556_30437600	0.571816	AGUGCAA	ENSMUST00000054230.12|Sfmbt1|ENSMUSG00000006527.17|Scm-like with four mbt domains 1
mm39_v1_chr2_-_45003270_45003296	0.57034	AGUGCAA	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr3_-_88332401_88332446	0.56744	AGUGCAA	ENSMUST00000168755.7|Slc25a44|ENSMUSG00000050144.14|solute carrier family 25, member 44	ENSMUST00000193433.6|Slc25a44|ENSMUSG00000050144.14|solute carrier family 25, member 44	ENSMUST00000195657.6|Slc25a44|ENSMUSG00000050144.14|solute carrier family 25, member 44	ENSMUST00000057935.9|Slc25a44|ENSMUSG00000050144.14|solute carrier family 25, member 44
mm39_v1_chr3_-_116301720_116301857	0.567352	AGUGCAA	ENSMUST00000000348.15|Rtca|ENSMUSG00000000339.15|RNA 3'-terminal phosphate cyclase
mm39_v1_chrX_-_42256694_42256715	0.538975	AGUGCAA	ENSMUST00000115058.8|Tenm1|ENSMUSG00000016150.16|teneurin transmembrane protein 1	ENSMUST00000115059.8|Tenm1|ENSMUSG00000016150.16|teneurin transmembrane protein 1
mm39_v1_chr12_+_81906738_81906814	0.536285	AGUGCAA	ENSMUST00000221721.2|Pcnx|ENSMUSG00000021140.10|pecanex homolog	ENSMUST00000021567.6|Pcnx|ENSMUSG00000021140.10|pecanex homolog
mm39_v1_chr8_-_68427217_68427248	0.526805	AGUGCAA	ENSMUST00000098696.10|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3	ENSMUST00000038959.16|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3	ENSMUST00000093469.11|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3
mm39_v1_chrX_-_73129195_73129296	0.523236	AGUGCAA	ENSMUST00000140399.3|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000123362.8|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000100750.10|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000033770.13|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2
mm39_v1_chr6_+_50087167_50087363	0.523027	AGUGCAA	ENSMUST00000166318.8|Mpp6|ENSMUSG00000038388.15|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	ENSMUST00000036236.15|Mpp6|ENSMUSG00000038388.15|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	ENSMUST00000204545.3|Mpp6|ENSMUSG00000038388.15|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	ENSMUST00000036225.15|Mpp6|ENSMUSG00000038388.15|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
mm39_v1_chr5_-_3852857_3852925	0.515959	AGUGCAA	ENSMUST00000043551.11|Ankib1|ENSMUSG00000040351.12|ankyrin repeat and IBR domain containing 1
mm39_v1_chr7_-_132415528_132415635	0.513041	AGUGCAA	ENSMUST00000097998.9|Fam53b|ENSMUSG00000030956.16|family with sequence similarity 53, member B
mm39_v1_chr6_+_136495784_136495808	0.50461	AGUGCAA	ENSMUST00000032335.13|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein	ENSMUST00000185724.7|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr18_+_69478790_69478882	0.49781	AGUGCAA	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr13_-_64300964_64301043	0.495914	AGUGCAA	ENSMUST00000059817.12|Zfp367|ENSMUSG00000044934.14|zinc finger protein 367	ENSMUST00000117241.2|Zfp367|ENSMUSG00000044934.14|zinc finger protein 367
mm39_v1_chr5_-_62923463_62923615	0.493064	AGUGCAA	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr7_-_63588610_63588704	0.491711	AGUGCAA	ENSMUST00000063694.10|Klf13|ENSMUSG00000052040.11|Kruppel-like factor 13
mm39_v1_chr12_+_81678143_81678169	0.491632	AGUGCAA	ENSMUST00000036116.6|Ttc9|ENSMUSG00000042734.7|tetratricopeptide repeat domain 9
mm39_v1_chr16_+_30418535_30418552	0.489085	AGUGCAA	ENSMUST00000059078.4|Fam43a|ENSMUSG00000046546.4|family with sequence similarity 43, member A
mm39_v1_chr2_-_69416365_69416409	0.479446	AGUGCAA	ENSMUST00000100051.9|Lrp2|ENSMUSG00000027070.15|low density lipoprotein receptor-related protein 2	ENSMUST00000092551.5|Lrp2|ENSMUSG00000027070.15|low density lipoprotein receptor-related protein 2	ENSMUST00000080953.12|Lrp2|ENSMUSG00000027070.15|low density lipoprotein receptor-related protein 2
mm39_v1_chr11_-_115494692_115494877	0.474709	AGUGCAA	ENSMUST00000125097.2|Gga3|ENSMUSG00000020740.14|golgi associated, gamma adaptin ear containing, ARF binding protein 3	ENSMUST00000019135.14|Gga3|ENSMUSG00000020740.14|golgi associated, gamma adaptin ear containing, ARF binding protein 3	ENSMUST00000106508.10|Gga3|ENSMUSG00000020740.14|golgi associated, gamma adaptin ear containing, ARF binding protein 3
mm39_v1_chrX_-_135769285_135769504	0.473251	AGUGCAA	ENSMUST00000058814.7|Rab9b|ENSMUSG00000043463.7|RAB9B, member RAS oncogene family
mm39_v1_chr13_+_16189041_16189060	0.45314	AGUGCAA	ENSMUST00000164993.2|Inhba|ENSMUSG00000041324.15|inhibin beta-A
mm39_v1_chr18_+_10725532_10725564	0.450961	AGUGCAA	ENSMUST00000052838.11|Mib1|ENSMUSG00000024294.15|mindbomb E3 ubiquitin protein ligase 1
mm39_v1_chr2_-_132420074_132420153	0.450396	AGUGCAA	ENSMUST00000110136.8|Gpcpd1|ENSMUSG00000027346.16|glycerophosphocholine phosphodiesterase 1	ENSMUST00000124107.8|Gpcpd1|ENSMUSG00000027346.16|glycerophosphocholine phosphodiesterase 1	ENSMUST00000060955.12|Gpcpd1|ENSMUSG00000027346.16|glycerophosphocholine phosphodiesterase 1
mm39_v1_chr13_-_93636224_93636333	0.448757	AGUGCAA	ENSMUST00000220513.2|Jmy|ENSMUSG00000021690.11|junction-mediating and regulatory protein	ENSMUST00000065537.9|Jmy|ENSMUSG00000021690.11|junction-mediating and regulatory protein
mm39_v1_chr9_+_15217548_15217625	0.437583	AGUGCAA	ENSMUST00000215124.2|Taf1d|ENSMUSG00000031939.17|TATA-box binding protein associated factor, RNA polymerase I, D	ENSMUST00000164079.9|Taf1d|ENSMUSG00000031939.17|TATA-box binding protein associated factor, RNA polymerase I, D	ENSMUST00000216109.2|Taf1d|ENSMUSG00000031939.17|TATA-box binding protein associated factor, RNA polymerase I, D
mm39_v1_chr1_+_59802543_59802559	0.428718	AGUGCAA	ENSMUST00000087435.7|Bmpr2|ENSMUSG00000067336.7|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm39_v1_chr1_+_155034452_155034522	0.420212	AGUGCAA	ENSMUST00000027743.13|Stx6|ENSMUSG00000026470.15|syntaxin 6	ENSMUST00000195302.6|Stx6|ENSMUSG00000026470.15|syntaxin 6
mm39_v1_chr11_+_105480796_105480857	0.418299	AGUGCAA	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr12_+_111540920_111540977	0.41262	AGUGCAA	ENSMUST00000075281.8|Mark3|ENSMUSG00000007411.17|MAP/microtubule affinity regulating kinase 3	ENSMUST00000084953.13|Mark3|ENSMUSG00000007411.17|MAP/microtubule affinity regulating kinase 3
mm39_v1_chrX_+_111513971_111513971	0.408226	AGUGCAA	ENSMUST00000071814.13|Zfp711|ENSMUSG00000025529.15|zinc finger protein 711
mm39_v1_chr10_+_24025188_24025274	0.407917	AGUGCAA	ENSMUST00000020174.7|Stx7|ENSMUSG00000019998.7|syntaxin 7	ENSMUST00000220041.2|Stx7|ENSMUSG00000019998.7|syntaxin 7
mm39_v1_chr7_+_119701670_119701713	0.403692	AGUGCAA	ENSMUST00000118737.3|Tmem159|ENSMUSG00000030917.14|transmembrane protein 159
mm39_v1_chrX_+_52076998_52077023	0.403571	AGUGCAA	ENSMUST00000026723.9|Hprt|ENSMUSG00000025630.9|hypoxanthine guanine phosphoribosyl transferase
mm39_v1_chr10_+_40225272_40225385	0.403522	AGUGCAA	ENSMUST00000044672.11|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19	ENSMUST00000095743.4|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19
mm39_v1_chr2_+_181405106_181405148	0.403182	AGUGCAA	ENSMUST00000081125.11|Myt1|ENSMUSG00000010505.17|myelin transcription factor 1
mm39_v1_chr5_-_103247920_103247954	0.39938	AGUGCAA	ENSMUST00000112848.8|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10
mm39_v1_chr1_+_105591595_105591648	0.398622	AGUGCAA	ENSMUST00000039173.13|Relch|ENSMUSG00000026319.14|RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	ENSMUST00000086721.10|Relch|ENSMUSG00000026319.14|RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	ENSMUST00000190501.7|Relch|ENSMUSG00000026319.14|RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
mm39_v1_chr16_-_31094095_31094109	0.390208	AGUGCAA	ENSMUST00000060188.14|Ppp1r2|ENSMUSG00000047714.15|protein phosphatase 1, regulatory inhibitor subunit 2
mm39_v1_chr11_-_113574981_113575013	0.389653	AGUGCAA	ENSMUST00000120194.2|Fam104a|ENSMUSG00000041629.8|family with sequence similarity 104, member A
mm39_v1_chr5_-_143098726_143098749	0.383393	AGUGCAA	ENSMUST00000200607.5|Rnf216|ENSMUSG00000045078.13|ring finger protein 216	ENSMUST00000053498.13|Rnf216|ENSMUSG00000045078.13|ring finger protein 216
mm39_v1_chr4_+_47353217_47353226	0.381941	AGUGCAA	ENSMUST00000007757.15|Tgfbr1|ENSMUSG00000007613.16|transforming growth factor, beta receptor I
mm39_v1_chr15_-_77191079_77191128	0.379424	AGUGCAA	ENSMUST00000171751.10|Rbfox2|ENSMUSG00000033565.19|RNA binding protein, fox-1 homolog (C. elegans) 2
mm39_v1_chrX_+_35592006_35592071	0.376809	AGUGCAA	ENSMUST00000016383.10|Lonrf3|ENSMUSG00000016239.12|LON peptidase N-terminal domain and ring finger 3
mm39_v1_chr1_-_132953068_132953154	0.37108	AGUGCAA	ENSMUST00000186617.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067429.10|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067398.13|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000188090.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4
mm39_v1_chr17_+_29171386_29171573	0.369423	AGUGCAA	ENSMUST00000118762.9|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000057174.16|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000232874.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000232772.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000233334.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000150858.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000233064.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20
mm39_v1_chr4_-_108637979_108638000	0.361589	AGUGCAA	ENSMUST00000106657.8|Zfyve9|ENSMUSG00000034557.15|zinc finger, FYVE domain containing 9
mm39_v1_chr6_+_15720653_15720747	0.357796	AGUGCAA	ENSMUST00000101663.10|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000190255.7|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000189359.7|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000125326.8|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing
mm39_v1_chr7_-_105401398_105401442	0.355651	AGUGCAA	ENSMUST00000033184.6|Tpp1|ENSMUSG00000030894.6|tripeptidyl peptidase I
mm39_v1_chr11_-_40583493_40583601	0.353584	AGUGCAA	ENSMUST00000040167.11|Mat2b|ENSMUSG00000042032.14|methionine adenosyltransferase II, beta
mm39_v1_chr19_-_12773472_12773510	0.352465	AGUGCAA	ENSMUST00000038627.9|Zfp91|ENSMUSG00000024695.17|zinc finger protein 91
mm39_v1_chr10_-_13350106_13350185	0.348654	AGUGCAA	ENSMUST00000105545.12|Phactr2|ENSMUSG00000062866.17|phosphatase and actin regulator 2
mm39_v1_chr5_-_125467063_125467120	0.340702	AGUGCAA	ENSMUST00000136312.2|Ubc|ENSMUSG00000008348.10|ubiquitin C
mm39_v1_chr13_+_81031512_81031543	0.339561	AGUGCAA	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr7_-_109351399_109351497	0.335455	AGUGCAA	ENSMUST00000128043.2|Tmem9b|ENSMUSG00000031021.14|TMEM9 domain family, member B	ENSMUST00000033333.13|Tmem9b|ENSMUSG00000031021.14|TMEM9 domain family, member B
mm39_v1_chr13_+_56850795_56850925	0.331831	AGUGCAA	ENSMUST00000069557.14|Smad5|ENSMUSG00000021540.17|SMAD family member 5	ENSMUST00000109876.8|Smad5|ENSMUSG00000021540.17|SMAD family member 5
mm39_v1_chr9_+_57615816_57615891	0.327826	AGUGCAA	ENSMUST00000043990.14|Edc3|ENSMUSG00000038957.14|enhancer of mRNA decapping 3	ENSMUST00000142807.2|Edc3|ENSMUSG00000038957.14|enhancer of mRNA decapping 3
mm39_v1_chr6_-_129252396_129252402	0.324721	AGUGCAA	ENSMUST00000032259.6|Cd69|ENSMUSG00000030156.6|CD69 antigen
mm39_v1_chr4_+_34550918_34550945	0.321034	AGUGCAA	ENSMUST00000084299.6|Akirin2|ENSMUSG00000028291.8|akirin 2
mm39_v1_chrX_-_7940959_7940999	0.320629	AGUGCAA	ENSMUST00000115636.4|Suv39h1|ENSMUSG00000039231.19|suppressor of variegation 3-9 1	ENSMUST00000115638.10|Suv39h1|ENSMUSG00000039231.19|suppressor of variegation 3-9 1
mm39_v1_chr11_+_31822211_31822263	0.316079	AGUGCAA	ENSMUST00000020543.13|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4	ENSMUST00000109412.9|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4
mm39_v1_chr5_+_75735576_75735663	0.310844	AGUGCAA	ENSMUST00000144270.8|Kit|ENSMUSG00000005672.13|KIT proto-oncogene receptor tyrosine kinase	ENSMUST00000005815.7|Kit|ENSMUSG00000005672.13|KIT proto-oncogene receptor tyrosine kinase
mm39_v1_chr19_+_36903471_36903541	0.310801	AGUGCAA	ENSMUST00000099494.4|Btaf1|ENSMUSG00000040565.9|B-TFIID TATA-box binding protein associated factor 1
mm39_v1_chr8_+_105951777_105951827	0.310732	AGUGCAA	ENSMUST00000034361.10|D230025D16Rik|ENSMUSG00000031889.10|RIKEN cDNA D230025D16 gene
mm39_v1_chr4_-_22488296_22488366	0.307159	AGUGCAA	ENSMUST00000178174.3|Pou3f2|ENSMUSG00000095139.3|POU domain, class 3, transcription factor 2
mm39_v1_chr6_-_143892814_143892837	0.3071	AGUGCAA	ENSMUST00000124233.7|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000144289.4|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000111748.8|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5
mm39_v1_chr5_-_102217770_102217807	0.306166	AGUGCAA	ENSMUST00000053177.14|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3	ENSMUST00000174698.2|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3
mm39_v1_chr19_+_60800012_60800057	0.303179	AGUGCAA	ENSMUST00000128357.8|Dennd10|ENSMUSG00000024993.16|DENN domain containing 10	ENSMUST00000119633.8|Dennd10|ENSMUSG00000024993.16|DENN domain containing 10	ENSMUST00000025957.9|Dennd10|ENSMUSG00000024993.16|DENN domain containing 10
mm39_v1_chr3_-_32419609_32419840	0.297682	AGUGCAA	ENSMUST00000139660.2|Zmat3|ENSMUSG00000027663.13|zinc finger matrin type 3	ENSMUST00000168566.3|Zmat3|ENSMUSG00000027663.13|zinc finger matrin type 3	ENSMUST00000029199.11|Zmat3|ENSMUSG00000027663.13|zinc finger matrin type 3
mm39_v1_chr1_+_87683592_87683839	0.293773	AGUGCAA	ENSMUST00000144047.8|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000027512.13|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000113186.8|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000113190.3|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)
mm39_v1_chr8_+_33876353_33876353	0.290863	AGUGCAA	ENSMUST00000070340.6|Purg|ENSMUSG00000049184.7|purine-rich element binding protein G	ENSMUST00000078058.5|Purg|ENSMUSG00000049184.7|purine-rich element binding protein G
mm39_v1_chr2_-_157408239_157408281	0.289297	AGUGCAA	ENSMUST00000109528.9|Blcap|ENSMUSG00000067787.11|bladder cancer associated protein	ENSMUST00000088494.3|Blcap|ENSMUSG00000067787.11|bladder cancer associated protein
mm39_v1_chr14_-_47805861_47805896	0.289051	AGUGCAA	ENSMUST00000228784.2|Atg14|ENSMUSG00000037526.8|autophagy related 14	ENSMUST00000042988.7|Atg14|ENSMUSG00000037526.8|autophagy related 14
mm39_v1_chr11_-_11987391_11987407	0.280285	AGUGCAA	ENSMUST00000093321.12|Grb10|ENSMUSG00000020176.18|growth factor receptor bound protein 10
mm39_v1_chr1_-_64160557_64160650	0.277977	AGUGCAA	ENSMUST00000055001.10|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)	ENSMUST00000114086.8|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chr5_-_92231314_92231416	0.277758	AGUGCAA	ENSMUST00000169094.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2	ENSMUST00000167918.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2
mm39_v1_chr1_+_12762501_12762590	0.268057	AGUGCAA	ENSMUST00000177608.8|Sulf1|ENSMUSG00000016918.16|sulfatase 1	ENSMUST00000180062.8|Sulf1|ENSMUSG00000016918.16|sulfatase 1
mm39_v1_chr9_+_109760528_109760554	0.261704	AGUGCAA	ENSMUST00000035055.15|Map4|ENSMUSG00000032479.16|microtubule-associated protein 4
mm39_v1_chr12_-_75642969_75643036	0.258167	AGUGCAA	ENSMUST00000021447.9|Ppp2r5e|ENSMUSG00000021051.11|protein phosphatase 2, regulatory subunit B', epsilon	ENSMUST00000220035.2|Ppp2r5e|ENSMUSG00000021051.11|protein phosphatase 2, regulatory subunit B', epsilon
mm39_v1_chr3_+_94744844_94744884	0.255811	AGUGCAA	ENSMUST00000107270.9|Pogz|ENSMUSG00000038902.15|pogo transposable element with ZNF domain
mm39_v1_chr5_+_28522150_28522217	0.250109	AGUGCAA	ENSMUST00000114884.8|Rbm33|ENSMUSG00000048271.15|RNA binding motif protein 33	ENSMUST00000059644.13|Rbm33|ENSMUSG00000048271.15|RNA binding motif protein 33	ENSMUST00000030920.6|Rbm33|ENSMUSG00000048271.15|RNA binding motif protein 33
mm39_v1_chr14_-_122703089_122703089	0.250044	AGUGCAA	ENSMUST00000039118.7|Zic5|ENSMUSG00000041703.8|zinc finger protein of the cerebellum 5
mm39_v1_chr7_-_105282751_105282807	0.247622	AGUGCAA	ENSMUST00000057525.14|Trim3|ENSMUSG00000036989.17|tripartite motif-containing 3
mm39_v1_chr8_-_114575247_114575406	0.246825	AGUGCAA	ENSMUST00000093113.5|Adamts18|ENSMUSG00000053399.10|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
mm39_v1_chr2_-_38177359_38177406	0.246183	AGUGCAA	ENSMUST00000102787.10|Dennd1a|ENSMUSG00000035392.18|DENN/MADD domain containing 1A
mm39_v1_chr11_-_118246332_118246332	0.243271	AGUGCAA	ENSMUST00000017610.10|Timp2|ENSMUSG00000017466.10|tissue inhibitor of metalloproteinase 2
mm39_v1_chr6_-_71417607_71417630	0.240457	AGUGCAA	ENSMUST00000002292.15|Rmnd5a|ENSMUSG00000002222.15|required for meiotic nuclear division 5 homolog A
mm39_v1_chrX_+_99019176_99019387	0.234973	AGUGCAA	ENSMUST00000113781.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000113783.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000113779.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000113776.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000113775.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000113780.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000113778.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000113777.8|Eda|ENSMUSG00000059327.10|ectodysplasin-A	ENSMUST00000071453.3|Eda|ENSMUSG00000059327.10|ectodysplasin-A
mm39_v1_chr9_+_77661808_77661823	0.234109	AGUGCAA	ENSMUST00000034905.9|Gclc|ENSMUSG00000032350.10|glutamate-cysteine ligase, catalytic subunit
mm39_v1_chr11_-_102446947_102447025	0.227767	AGUGCAA	ENSMUST00000143842.2|Gpatch8|ENSMUSG00000034621.15|G patch domain containing 8
mm39_v1_chr13_-_120252337_120252425	0.226941	AGUGCAA	ENSMUST00000177916.8|Zfp131|ENSMUSG00000094870.9|zinc finger protein 131	ENSMUST00000178271.3|Zfp131|ENSMUSG00000094870.9|zinc finger protein 131	ENSMUST00000223722.2|Zfp131|ENSMUSG00000094870.9|zinc finger protein 131
mm39_v1_chr3_+_135144202_135144241	0.221413	AGUGCAA	ENSMUST00000166033.6|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3
mm39_v1_chr19_+_7394951_7395015	0.218316	AGUGCAA	ENSMUST00000159348.3|2700081O15Rik|ENSMUSG00000053080.11|RIKEN cDNA 2700081O15 gene
mm39_v1_chr12_+_29988035_29988058	0.217283	AGUGCAA	ENSMUST00000122328.8|Pxdn|ENSMUSG00000020674.18|peroxidasin	ENSMUST00000118321.3|Pxdn|ENSMUSG00000020674.18|peroxidasin
mm39_v1_chr18_+_44513547_44513644	0.215472	AGUGCAA	ENSMUST00000202306.2|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2	ENSMUST00000025350.10|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2
mm39_v1_chr6_-_114898739_114898798	0.214772	AGUGCAA	ENSMUST00000032459.14|Vgll4|ENSMUSG00000030315.16|vestigial like family member 4
mm39_v1_chr7_-_131012202_131012250	0.2139	AGUGCAA	ENSMUST00000207243.2|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000128432.3|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000121033.8|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000046306.15|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5
mm39_v1_chr17_-_33937565_33937664	0.211129	AGUGCAA	ENSMUST00000174040.2|Marchf2|ENSMUSG00000079557.12|membrane associated ring-CH-type finger 2	ENSMUST00000173015.8|Marchf2|ENSMUSG00000079557.12|membrane associated ring-CH-type finger 2	ENSMUST00000066121.13|Marchf2|ENSMUSG00000079557.12|membrane associated ring-CH-type finger 2	ENSMUST00000186022.7|Marchf2|ENSMUSG00000079557.12|membrane associated ring-CH-type finger 2	ENSMUST00000173329.8|Marchf2|ENSMUSG00000079557.12|membrane associated ring-CH-type finger 2	ENSMUST00000172767.9|Marchf2|ENSMUSG00000079557.12|membrane associated ring-CH-type finger 2
mm39_v1_chr9_-_65734826_65734859	0.210719	AGUGCAA	ENSMUST00000159109.2|Zfp609|ENSMUSG00000040524.10|zinc finger protein 609
mm39_v1_chr2_-_63928339_63928367	0.209562	AGUGCAA	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr1_-_156767123_156767186	0.2076	AGUGCAA	ENSMUST00000189316.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000190648.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000172057.8|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000191605.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2
mm39_v1_chr1_-_172034354_172034371	0.205227	AGUGCAA	ENSMUST00000013842.12|Pea15a|ENSMUSG00000013698.13|phosphoprotein enriched in astrocytes 15A	ENSMUST00000111247.8|Pea15a|ENSMUSG00000013698.13|phosphoprotein enriched in astrocytes 15A
mm39_v1_chr1_-_143578542_143578631	0.202649	AGUGCAA	ENSMUST00000018337.9|Cdc73|ENSMUSG00000026361.10|cell division cycle 73, Paf1/RNA polymerase II complex component
mm39_v1_chr11_+_117545618_117545655	0.202423	AGUGCAA	ENSMUST00000106344.8|Tnrc6c|ENSMUSG00000025571.14|trinucleotide repeat containing 6C
mm39_v1_chr13_-_43457626_43457689	0.201904	AGUGCAA	ENSMUST00000055341.7|Gfod1|ENSMUSG00000051335.7|glucose-fructose oxidoreductase domain containing 1
mm39_v1_chr10_+_4561974_4562075	0.199763	AGUGCAA	ENSMUST00000105590.8|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)	ENSMUST00000067086.14|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)
mm39_v1_chr3_+_151916059_151916102	0.190217	AGUGCAA	ENSMUST00000166984.8|Fubp1|ENSMUSG00000028034.16|far upstream element (FUSE) binding protein 1
mm39_v1_chr1_+_176642226_176642226	0.184713	AGUGCAA	ENSMUST00000056773.15|Sdccag8|ENSMUSG00000026504.18|serologically defined colon cancer antigen 8	ENSMUST00000027785.15|Sdccag8|ENSMUSG00000026504.18|serologically defined colon cancer antigen 8
mm39_v1_chr13_+_9326513_9326657	0.181529	AGUGCAA	ENSMUST00000174552.8|Dip2c|ENSMUSG00000048264.17|disco interacting protein 2 homolog C
mm39_v1_chr12_-_104718159_104718211	0.173535	AGUGCAA	ENSMUST00000041987.7|Dicer1|ENSMUSG00000041415.11|dicer 1, ribonuclease type III
mm39_v1_chr16_+_16801246_16801278	0.16914	AGUGCAA	ENSMUST00000232611.2|Mapk1|ENSMUSG00000063358.18|mitogen-activated protein kinase 1	ENSMUST00000069107.14|Mapk1|ENSMUSG00000063358.18|mitogen-activated protein kinase 1
mm39_v1_chr4_-_151946219_151946333	0.167001	AGUGCAA	ENSMUST00000097774.9|Camta1|ENSMUSG00000014592.22|calmodulin binding transcription activator 1
mm39_v1_chr10_-_67120959_67121093	0.166189	AGUGCAA	ENSMUST00000159002.2|Nrbf2|ENSMUSG00000075000.12|nuclear receptor binding factor 2	ENSMUST00000077839.13|Nrbf2|ENSMUSG00000075000.12|nuclear receptor binding factor 2
mm39_v1_chr4_-_94491473_94491490	0.158669	AGUGCAA	ENSMUST00000107107.9|Plaa|ENSMUSG00000028577.14|phospholipase A2, activating protein
mm39_v1_chr6_-_120015608_120015660	0.158274	AGUGCAA	ENSMUST00000177761.8|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000088644.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000060043.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chr8_+_85428059_85428173	0.15659	AGUGCAA	ENSMUST00000238364.2|Lyl1|ENSMUSG00000034041.6|lymphoblastomic leukemia 1	ENSMUST00000238562.2|Lyl1|ENSMUSG00000034041.6|lymphoblastomic leukemia 1	ENSMUST00000037165.6|Lyl1|ENSMUSG00000034041.6|lymphoblastomic leukemia 1
mm39_v1_chr2_-_20973692_20973768	0.153709	AGUGCAA	ENSMUST00000114594.8|Arhgap21|ENSMUSG00000036591.17|Rho GTPase activating protein 21
mm39_v1_chr5_+_37208198_37208209	0.15171	AGUGCAA	ENSMUST00000043794.11|Jakmip1|ENSMUSG00000063646.19|janus kinase and microtubule interacting protein 1
mm39_v1_chr10_+_20024724_20024760	0.15064	AGUGCAA	ENSMUST00000116259.5|Map7|ENSMUSG00000019996.18|microtubule-associated protein 7	ENSMUST00000214231.2|Map7|ENSMUSG00000019996.18|microtubule-associated protein 7
mm39_v1_chr2_+_93472657_93472733	0.14777	AGUGCAA	ENSMUST00000042078.10|Alx4|ENSMUSG00000040310.13|aristaless-like homeobox 4	ENSMUST00000111254.2|Alx4|ENSMUSG00000040310.13|aristaless-like homeobox 4
mm39_v1_chr5_+_76988444_76988484	0.146217	AGUGCAA	ENSMUST00000120639.9|Cracd|ENSMUSG00000036377.20|capping protein inhibiting regulator of actin	ENSMUST00000163347.8|Cracd|ENSMUSG00000036377.20|capping protein inhibiting regulator of actin	ENSMUST00000121851.2|Cracd|ENSMUSG00000036377.20|capping protein inhibiting regulator of actin
mm39_v1_chr17_-_45997132_45997194	0.144429	AGUGCAA	ENSMUST00000113523.9|Tmem63b|ENSMUSG00000036026.16|transmembrane protein 63b
mm39_v1_chr6_+_47854138_47854138	0.138709	AGUGCAA	ENSMUST00000061890.8|Zfp282|ENSMUSG00000025821.10|zinc finger protein 282
mm39_v1_chr5_-_148489457_148489498	0.13808	AGUGCAA	ENSMUST00000079324.14|Ubl3|ENSMUSG00000001687.16|ubiquitin-like 3
mm39_v1_chr11_-_59855762_59855777	0.131105	AGUGCAA	ENSMUST00000062405.8|Rasd1|ENSMUSG00000049892.8|RAS, dexamethasone-induced 1
mm39_v1_chr3_-_107667499_107667572	0.127421	AGUGCAA	ENSMUST00000153114.2|Csf1|ENSMUSG00000014599.11|colony stimulating factor 1 (macrophage)	ENSMUST00000118593.8|Csf1|ENSMUSG00000014599.11|colony stimulating factor 1 (macrophage)	ENSMUST00000120243.8|Csf1|ENSMUSG00000014599.11|colony stimulating factor 1 (macrophage)
mm39_v1_chr10_-_122912272_122912410	0.119646	AGUGCAA	ENSMUST00000219203.2|Mon2|ENSMUSG00000034602.16|MON2 homolog, regulator of endosome to Golgi trafficking	ENSMUST00000073792.11|Mon2|ENSMUSG00000034602.16|MON2 homolog, regulator of endosome to Golgi trafficking
mm39_v1_chr7_+_132460954_132460996	0.117795	AGUGCAA	ENSMUST00000084497.12|Abraxas2|ENSMUSG00000030965.20|BRISC complex subunit	ENSMUST00000106161.8|Abraxas2|ENSMUSG00000030965.20|BRISC complex subunit
mm39_v1_chr2_+_57127665_57127741	0.117154	AGUGCAA	ENSMUST00000169687.8|Gpd2|ENSMUSG00000026827.13|glycerol phosphate dehydrogenase 2, mitochondrial
mm39_v1_chr17_+_53786240_53786332	0.112729	AGUGCAA	ENSMUST00000017975.7|Rab5a|ENSMUSG00000017831.9|RAB5A, member RAS oncogene family
mm39_v1_chr1_-_30912662_30912738	0.0983894	AGUGCAA	ENSMUST00000186733.7|Phf3|ENSMUSG00000048874.16|PHD finger protein 3
mm39_v1_chr13_+_96679233_96679283	0.0944859	AGUGCAA	ENSMUST00000077672.12|Cert1|ENSMUSG00000021669.16|ceramide transporter 1	ENSMUST00000109444.3|Cert1|ENSMUSG00000021669.16|ceramide transporter 1
mm39_v1_chr11_+_16901370_16901418	0.0937219	AGUGCAA	ENSMUST00000109635.2|Fbxo48|ENSMUSG00000044966.5|F-box protein 48	ENSMUST00000061327.2|Fbxo48|ENSMUSG00000044966.5|F-box protein 48
mm39_v1_chrX_+_102400061_102400094	0.0926647	AGUGCAA	ENSMUST00000116547.3|Chic1|ENSMUSG00000031327.11|cysteine-rich hydrophobic domain 1
mm39_v1_chr1_+_64571942_64572013	0.0925374	AGUGCAA	ENSMUST00000171164.8|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000187811.7|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000049932.12|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000087366.11|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1
mm39_v1_chr6_-_97182509_97182608	0.0881544	AGUGCAA	ENSMUST00000164744.8|Uba3|ENSMUSG00000030061.17|ubiquitin-like modifier activating enzyme 3	ENSMUST00000089287.7|Uba3|ENSMUSG00000030061.17|ubiquitin-like modifier activating enzyme 3
mm39_v1_chr6_-_13677928_13677974	0.0873065	AGUGCAA	ENSMUST00000203078.2|Bmt2|ENSMUSG00000042742.8|base methyltransferase of 25S rRNA 2	ENSMUST00000045235.8|Bmt2|ENSMUSG00000042742.8|base methyltransferase of 25S rRNA 2
mm39_v1_chr11_-_85030761_85030864	0.0855992	AGUGCAA	ENSMUST00000108075.9|Usp32|ENSMUSG00000000804.15|ubiquitin specific peptidase 32
mm39_v1_chr4_+_11156411_11156453	0.0790723	AGUGCAA	ENSMUST00000029865.4|Trp53inp1|ENSMUSG00000028211.12|transformation related protein 53 inducible nuclear protein 1
mm39_v1_chr11_-_20781009_20781056	0.0747513	AGUGCAA	ENSMUST00000047028.9|Lgalsl|ENSMUSG00000042363.15|lectin, galactoside binding-like
mm39_v1_chr9_-_56068282_56068360	0.0740079	AGUGCAA	ENSMUST00000034876.10|Tspan3|ENSMUSG00000032324.12|tetraspanin 3
mm39_v1_chr5_-_138153956_138154006	0.0736923	AGUGCAA	ENSMUST00000132318.2|Zfp113|ENSMUSG00000037007.18|zinc finger protein 113	ENSMUST00000049393.15|Zfp113|ENSMUSG00000037007.18|zinc finger protein 113
mm39_v1_chr18_+_76374651_76374804	0.0712391	AGUGCAA	ENSMUST00000168423.9|Smad2|ENSMUSG00000024563.17|SMAD family member 2	ENSMUST00000091831.13|Smad2|ENSMUSG00000024563.17|SMAD family member 2
mm39_v1_chr2_-_119308094_119308186	0.0697597	AGUGCAA	ENSMUST00000110808.2|Ino80|ENSMUSG00000034154.16|INO80 complex subunit	ENSMUST00000049920.14|Ino80|ENSMUSG00000034154.16|INO80 complex subunit
mm39_v1_chr16_-_28748410_28748457	0.0603297	AGUGCAA	ENSMUST00000100023.3|Mb21d2|ENSMUSG00000051065.10|Mab-21 domain containing 2
mm39_v1_chr10_-_8761777_8761821	0.0561915	AGUGCAA	ENSMUST00000015449.6|Sash1|ENSMUSG00000015305.7|SAM and SH3 domain containing 1
mm39_v1_chr13_-_99027544_99027571	0.048294	AGUGCAA	ENSMUST00000109399.9|Tnpo1|ENSMUSG00000009470.18|transportin 1
mm39_v1_chr14_-_14371476_14371577	0.0453268	AGUGCAA	ENSMUST00000225653.2|Pxk|ENSMUSG00000033885.16|PX domain containing serine/threonine kinase	ENSMUST00000112689.9|Pxk|ENSMUSG00000033885.16|PX domain containing serine/threonine kinase	ENSMUST00000036682.9|Pxk|ENSMUSG00000033885.16|PX domain containing serine/threonine kinase
mm39_v1_chr8_+_105897300_105897446	0.0389769	AGUGCAA	ENSMUST00000052209.9|Cbfb|ENSMUSG00000031885.15|core binding factor beta	ENSMUST00000109392.9|Cbfb|ENSMUSG00000031885.15|core binding factor beta	ENSMUST00000109395.8|Cbfb|ENSMUSG00000031885.15|core binding factor beta
mm39_v1_chr2_+_112209548_112209598	0.03528	AGUGCAA	ENSMUST00000028552.4|Katnbl1|ENSMUSG00000027132.4|katanin p80 subunit B like 1
mm39_v1_chr1_-_24626492_24626553	0.0349188	AGUGCAA	ENSMUST00000051344.6|Col19a1|ENSMUSG00000026141.14|collagen, type XIX, alpha 1	ENSMUST00000115244.9|Col19a1|ENSMUSG00000026141.14|collagen, type XIX, alpha 1
mm39_v1_chr17_-_75858835_75858941	0.0320058	AGUGCAA	ENSMUST00000234785.2|Fam98a|ENSMUSG00000002017.11|family with sequence similarity 98, member A	ENSMUST00000112507.4|Fam98a|ENSMUSG00000002017.11|family with sequence similarity 98, member A
mm39_v1_chr19_-_18978463_18978483	0.0300527	AGUGCAA	ENSMUST00000040153.15|Rorb|ENSMUSG00000036192.16|RAR-related orphan receptor beta	ENSMUST00000112828.8|Rorb|ENSMUSG00000036192.16|RAR-related orphan receptor beta
mm39_v1_chr1_-_182169150_182169190	0.0267809	AGUGCAA	ENSMUST00000051431.10|Fbxo28|ENSMUSG00000047539.10|F-box protein 28
mm39_v1_chr3_+_32871669_32871726	0.0265255	AGUGCAA	ENSMUST00000072312.12|Usp13|ENSMUSG00000056900.14|ubiquitin specific peptidase 13 (isopeptidase T-3)	ENSMUST00000108228.8|Usp13|ENSMUSG00000056900.14|ubiquitin specific peptidase 13 (isopeptidase T-3)
mm39_v1_chr3_+_41510160_41510195	0.00248513	AGUGCAA	ENSMUST00000026865.15|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1	ENSMUST00000194181.6|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1	ENSMUST00000195846.6|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1
mm39_v1_chr5_-_123822351_123822442	0.00186612	AGUGCAA	ENSMUST00000111564.8|Clip1|ENSMUSG00000049550.18|CAP-GLY domain containing linker protein 1	ENSMUST00000063905.12|Clip1|ENSMUSG00000049550.18|CAP-GLY domain containing linker protein 1
mm39_v1_chr8_-_61436249_61436353	0.000846983	AGUGCAA	ENSMUST00000004430.14|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3	ENSMUST00000110301.2|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3	ENSMUST00000093490.9|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3
mm39_v1_chr4_+_101276474_101276547	0.000783893	AGUGCAA	ENSMUST00000102780.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4	ENSMUST00000106946.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4	ENSMUST00000106945.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4
