mm39_v1_chr12_-_55033113_55033128	5.28906	AGUGCUU	ENSMUST00000038926.13|Baz1a|ENSMUSG00000035021.14|bromodomain adjacent to zinc finger domain 1A
mm39_v1_chr11_-_117859997_117860018	4.39927	AGUGCUU	ENSMUST00000054002.4|Socs3|ENSMUSG00000053113.4|suppressor of cytokine signaling 3
mm39_v1_chr17_-_32074754_32074780	4.1133	AGUGCUU	ENSMUST00000024839.6|Sik1|ENSMUSG00000024042.8|salt inducible kinase 1
mm39_v1_chr5_-_136596299_136596390	4.0278	AGUGCUU	ENSMUST00000004097.16|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr2_+_119156265_119156298	3.77942	AGUGCUU	ENSMUST00000102517.4|Dll4|ENSMUSG00000027314.7|delta like canonical Notch ligand 4
mm39_v1_chr19_+_41471067_41471128	3.75803	AGUGCUU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr8_+_84682136_84682293	3.64675	AGUGCUU	ENSMUST00000005607.9|Asf1b|ENSMUSG00000005470.9|anti-silencing function 1B histone chaperone
mm39_v1_chr16_+_42727926_42728047	3.32501	AGUGCUU	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr5_-_21156766_21156824	3.2823	AGUGCUU	ENSMUST00000036489.10|Rsbn1l|ENSMUSG00000039968.10|round spermatid basic protein 1-like
mm39_v1_chr1_-_13660027_13660134	3.24974	AGUGCUU	ENSMUST00000027068.11|Tram1|ENSMUSG00000025935.11|translocating chain-associating membrane protein 1
mm39_v1_chr9_+_72439496_72439553	3.1759	AGUGCUU	ENSMUST00000163401.9|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7	ENSMUST00000093820.10|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7
mm39_v1_chr2_-_104647041_104647138	3.06086	AGUGCUU	ENSMUST00000117237.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1	ENSMUST00000231375.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1
mm39_v1_chr9_+_30941924_30941997	2.92868	AGUGCUU	ENSMUST00000216649.2|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44	ENSMUST00000115222.10|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44
mm39_v1_chr15_+_102314809_102314833	2.92028	AGUGCUU	ENSMUST00000001326.7|Sp1|ENSMUSG00000001280.14|trans-acting transcription factor 1
mm39_v1_chr11_-_117671436_117671525	2.87266	AGUGCUU	ENSMUST00000026659.10|Tmc6|ENSMUSG00000025572.19|transmembrane channel-like gene family 6	ENSMUST00000127227.2|Tmc6|ENSMUSG00000025572.19|transmembrane channel-like gene family 6
mm39_v1_chr1_-_69724939_69724987	2.81717	AGUGCUU	ENSMUST00000027146.9|Ikzf2|ENSMUSG00000025997.14|IKAROS family zinc finger 2
mm39_v1_chr11_-_103158190_103158298	2.79487	AGUGCUU	ENSMUST00000021324.3|Map3k14|ENSMUSG00000020941.8|mitogen-activated protein kinase kinase kinase 14
mm39_v1_chr18_+_84106188_84106305	2.75313	AGUGCUU	ENSMUST00000060223.4|Zadh2|ENSMUSG00000049090.4|zinc binding alcohol dehydrogenase, domain containing 2
mm39_v1_chr12_-_79343040_79343086	2.69176	AGUGCUU	ENSMUST00000218377.2|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26	ENSMUST00000021547.8|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26
mm39_v1_chr6_+_38410848_38410901	2.6607	AGUGCUU	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr8_-_41586713_41586793	2.62108	AGUGCUU	ENSMUST00000155055.2|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1	ENSMUST00000059115.13|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1	ENSMUST00000145860.2|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1
mm39_v1_chr7_-_115637970_115637985	2.56542	AGUGCUU	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr18_-_10182007_10182092	2.49806	AGUGCUU	ENSMUST00000067947.7|Rock1|ENSMUSG00000024290.10|Rho-associated coiled-coil containing protein kinase 1
mm39_v1_chr10_-_12839995_12840042	2.45213	AGUGCUU	ENSMUST00000219727.2|Stx11|ENSMUSG00000039232.13|syntaxin 11	ENSMUST00000163425.9|Stx11|ENSMUSG00000039232.13|syntaxin 11	ENSMUST00000042861.7|Stx11|ENSMUSG00000039232.13|syntaxin 11	ENSMUST00000218685.2|Stx11|ENSMUSG00000039232.13|syntaxin 11
mm39_v1_chr16_+_65612083_65612154	2.40428	AGUGCUU	ENSMUST00000168064.3|Vgll3|ENSMUSG00000091243.3|vestigial like family member 3
mm39_v1_chr1_-_82269137_82269137	2.38465	AGUGCUU	ENSMUST00000069799.3|Irs1|ENSMUSG00000055980.3|insulin receptor substrate 1
mm39_v1_chr14_+_32321341_32321498	2.37781	AGUGCUU	ENSMUST00000187377.7|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1	ENSMUST00000189022.8|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1	ENSMUST00000186452.7|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1
mm39_v1_chr10_+_70080913_70080970	2.34763	AGUGCUU	ENSMUST00000046807.7|Slc16a9|ENSMUSG00000037762.7|solute carrier family 16 (monocarboxylic acid transporters), member 9
mm39_v1_chr12_+_71062733_71062837	2.2754	AGUGCUU	ENSMUST00000046305.12|Arid4a|ENSMUSG00000048118.18|AT rich interactive domain 4A (RBP1-like)
mm39_v1_chr4_+_135899678_135899738	2.26004	AGUGCUU	ENSMUST00000061721.6|E2f2|ENSMUSG00000018983.10|E2F transcription factor 2
mm39_v1_chr14_+_34395845_34395890	2.25007	AGUGCUU	ENSMUST00000048263.14|Wapl|ENSMUSG00000041408.19|WAPL cohesin release factor
mm39_v1_chr1_-_151304191_151304225	2.24438	AGUGCUU	ENSMUST00000064771.12|Swt1|ENSMUSG00000052748.15|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm39_v1_chr3_-_100396635_100396652	2.13445	AGUGCUU	ENSMUST00000061455.9|Tent5c|ENSMUSG00000044468.15|terminal nucleotidyltransferase 5C
mm39_v1_chr9_+_74769166_74769203	2.10362	AGUGCUU	ENSMUST00000056006.11|Onecut1|ENSMUSG00000043013.11|one cut domain, family member 1
mm39_v1_chr5_-_9047324_9047324	2.09165	AGUGCUU	ENSMUST00000003720.5|Crot|ENSMUSG00000003623.5|carnitine O-octanoyltransferase
mm39_v1_chr8_-_58106057_58106074	2.00327	AGUGCUU	ENSMUST00000034021.12|Galnt7|ENSMUSG00000031608.14|polypeptide N-acetylgalactosaminyltransferase 7
mm39_v1_chr18_+_73706115_73706115	2.00193	AGUGCUU	ENSMUST00000091852.5|Mex3c|ENSMUSG00000037253.9|mex3 RNA binding family member C
mm39_v1_chr6_+_91955820_91955896	2.00033	AGUGCUU	ENSMUST00000089334.9|Fgd5|ENSMUSG00000034037.15|FYVE, RhoGEF and PH domain containing 5
mm39_v1_chr9_+_118435755_118435823	1.98332	AGUGCUU	ENSMUST00000044165.14|Itga9|ENSMUSG00000039115.14|integrin alpha 9
mm39_v1_chr1_-_171854818_171854880	1.97842	AGUGCUU	ENSMUST00000138714.2|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000027837.13|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000111264.8|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2
mm39_v1_chr9_-_44792575_44792621	1.96162	AGUGCUU	ENSMUST00000114689.8|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000002095.11|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000128768.3|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A
mm39_v1_chr7_+_89779564_89779724	1.93647	AGUGCUU	ENSMUST00000208742.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein	ENSMUST00000049537.9|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chrX_-_50294652_50294716	1.92526	AGUGCUU	ENSMUST00000114875.8|Mbnl3|ENSMUSG00000036109.18|muscleblind like splicing factor 3
mm39_v1_chr4_-_129121676_129121717	1.91108	AGUGCUU	ENSMUST00000106051.8|C77080|ENSMUSG00000050390.13|expressed sequence C77080
mm39_v1_chr18_+_89215543_89215572	1.8662	AGUGCUU	ENSMUST00000037142.13|Cd226|ENSMUSG00000034028.17|CD226 antigen
mm39_v1_chr12_-_70033732_70033776	1.83391	AGUGCUU	ENSMUST00000021467.8|Sav1|ENSMUSG00000021067.9|salvador family WW domain containing 1
mm39_v1_chr4_+_97665843_97665870	1.82395	AGUGCUU	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chrX_+_13147209_13147270	1.81305	AGUGCUU	ENSMUST00000000804.7|Ddx3x|ENSMUSG00000000787.13|DEAD box helicase 3, X-linked
mm39_v1_chr9_-_114393406_114393437	1.8118	AGUGCUU	ENSMUST00000111816.3|Trim71|ENSMUSG00000079259.3|tripartite motif-containing 71
mm39_v1_chr9_-_116004265_116004333	1.80853	AGUGCUU	ENSMUST00000061101.12|Tgfbr2|ENSMUSG00000032440.14|transforming growth factor, beta receptor II
mm39_v1_chr5_-_143717970_143718072	1.78477	AGUGCUU	ENSMUST00000053287.6|Usp42|ENSMUSG00000051306.8|ubiquitin specific peptidase 42
mm39_v1_chr15_+_80595486_80595541	1.74063	AGUGCUU	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr3_-_105708632_105708694	1.70022	AGUGCUU	ENSMUST00000090678.11|Rap1a|ENSMUSG00000068798.11|RAS-related protein 1a
mm39_v1_chr2_-_157046386_157046461	1.66519	AGUGCUU	ENSMUST00000029170.8|Rbl1|ENSMUSG00000027641.14|RB transcriptional corepressor like 1
mm39_v1_chr2_-_62242562_62242581	1.64594	AGUGCUU	ENSMUST00000047812.8|Dpp4|ENSMUSG00000035000.9|dipeptidylpeptidase 4
mm39_v1_chr4_+_124696336_124696381	1.6296	AGUGCUU	ENSMUST00000138807.8|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1	ENSMUST00000030723.3|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1
mm39_v1_chr15_+_6737853_6737883	1.6237	AGUGCUU	ENSMUST00000061656.8|Rictor|ENSMUSG00000050310.10|RPTOR independent companion of MTOR, complex 2
mm39_v1_chr4_-_43562397_43562438	1.59585	AGUGCUU	ENSMUST00000030187.14|Tln1|ENSMUSG00000028465.17|talin 1
mm39_v1_chr10_+_43354807_43354859	1.59401	AGUGCUU	ENSMUST00000167488.9|Bend3|ENSMUSG00000038214.16|BEN domain containing 3
mm39_v1_chr9_+_51958453_51958473	1.57189	AGUGCUU	ENSMUST00000163153.9|Rdx|ENSMUSG00000032050.19|radixin
mm39_v1_chr2_-_63928339_63928367	1.5628	AGUGCUU	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr4_+_106173384_106173439	1.54082	AGUGCUU	ENSMUST00000165709.8|Usp24|ENSMUSG00000028514.16|ubiquitin specific peptidase 24	ENSMUST00000094933.5|Usp24|ENSMUSG00000028514.16|ubiquitin specific peptidase 24
mm39_v1_chr1_-_181039509_181039580	1.53495	AGUGCUU	ENSMUST00000162819.9|Wdr26|ENSMUSG00000038733.15|WD repeat domain 26	ENSMUST00000237749.2|Wdr26|ENSMUSG00000038733.15|WD repeat domain 26
mm39_v1_chr11_+_68322945_68322996	1.49033	AGUGCUU	ENSMUST00000021283.8|Pik3r5|ENSMUSG00000020901.14|phosphoinositide-3-kinase regulatory subunit 5
mm39_v1_chr10_+_128212953_128213024	1.4784	AGUGCUU	ENSMUST00000014642.10|Ankrd52|ENSMUSG00000014498.10|ankyrin repeat domain 52
mm39_v1_chr11_-_51891259_51891311	1.42852	AGUGCUU	ENSMUST00000020657.13|Ube2b|ENSMUSG00000020390.13|ubiquitin-conjugating enzyme E2B
mm39_v1_chr12_-_87346479_87346479	1.42157	AGUGCUU	ENSMUST00000125733.8|Ism2|ENSMUSG00000050671.13|isthmin 2
mm39_v1_chr5_+_147367237_147367355	1.37485	AGUGCUU	ENSMUST00000176600.8|Pan3|ENSMUSG00000029647.16|PAN3 poly(A) specific ribonuclease subunit
mm39_v1_chr12_-_98703664_98703774	1.36896	AGUGCUU	ENSMUST00000170188.8|Ptpn21|ENSMUSG00000021009.16|protein tyrosine phosphatase, non-receptor type 21
mm39_v1_chr7_-_144493560_144493606	1.34362	AGUGCUU	ENSMUST00000093962.5|Ccnd1|ENSMUSG00000070348.6|cyclin D1
mm39_v1_chrX_-_161671421_161671471	1.32992	AGUGCUU	ENSMUST00000033723.4|Syap1|ENSMUSG00000031357.4|synapse associated protein 1
mm39_v1_chr5_-_96309849_96309956	1.29449	AGUGCUU	ENSMUST00000155901.8|Cnot6l|ENSMUSG00000034724.19|CCR4-NOT transcription complex, subunit 6-like
mm39_v1_chr5_+_97145533_97145625	1.29179	AGUGCUU	ENSMUST00000112974.6|Bmp2k|ENSMUSG00000034663.14|BMP2 inducible kinase	ENSMUST00000035635.10|Bmp2k|ENSMUSG00000034663.14|BMP2 inducible kinase
mm39_v1_chr5_+_128677863_128677912	1.28592	AGUGCUU	ENSMUST00000117102.4|Fzd10|ENSMUSG00000081683.6|frizzled class receptor 10
mm39_v1_chr5_-_72661776_72661862	1.28295	AGUGCUU	ENSMUST00000175766.8|Corin|ENSMUSG00000005220.11|corin, serine peptidase	ENSMUST00000177290.8|Corin|ENSMUSG00000005220.11|corin, serine peptidase	ENSMUST00000176974.2|Corin|ENSMUSG00000005220.11|corin, serine peptidase	ENSMUST00000167460.9|Corin|ENSMUSG00000005220.11|corin, serine peptidase
mm39_v1_chr11_-_72302520_72302573	1.25939	AGUGCUU	ENSMUST00000108500.8|Smtnl2|ENSMUSG00000045667.15|smoothelin-like 2	ENSMUST00000050226.7|Smtnl2|ENSMUSG00000045667.15|smoothelin-like 2
mm39_v1_chr4_-_53159885_53159900	1.25655	AGUGCUU	ENSMUST00000030010.4|Abca1|ENSMUSG00000015243.5|ATP-binding cassette, sub-family A (ABC1), member 1
mm39_v1_chr14_-_104705420_104705479	1.25414	AGUGCUU	ENSMUST00000053016.10|Pou4f1|ENSMUSG00000048349.10|POU domain, class 4, transcription factor 1
mm39_v1_chr10_-_116417333_116417416	1.22192	AGUGCUU	ENSMUST00000218744.2|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105267.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105265.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000167706.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000168036.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000169921.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000020374.6|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2
mm39_v1_chr10_+_34359395_34359442	1.21934	AGUGCUU	ENSMUST00000019913.15|Frk|ENSMUSG00000019779.16|fyn-related kinase
mm39_v1_chr6_-_84570890_84570903	1.20191	AGUGCUU	ENSMUST00000168003.9|Cyp26b1|ENSMUSG00000063415.13|cytochrome P450, family 26, subfamily b, polypeptide 1
mm39_v1_chr11_-_49603501_49603555	1.19109	AGUGCUU	ENSMUST00000020624.7|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6	ENSMUST00000145353.8|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6
mm39_v1_chr16_-_16377982_16378114	1.18715	AGUGCUU	ENSMUST00000161861.8|Fgd4|ENSMUSG00000022788.17|FYVE, RhoGEF and PH domain containing 4
mm39_v1_chr11_+_79883885_79883963	1.16121	AGUGCUU	ENSMUST00000163272.2|Suz12|ENSMUSG00000017548.16|SUZ12 polycomb repressive complex 2 subunit	ENSMUST00000017692.15|Suz12|ENSMUSG00000017548.16|SUZ12 polycomb repressive complex 2 subunit
mm39_v1_chr3_+_65435825_65435876	1.1502	AGUGCUU	ENSMUST00000047906.10|Tiparp|ENSMUSG00000034640.10|TCDD-inducible poly(ADP-ribose) polymerase
mm39_v1_chr4_+_141028539_141028561	1.13504	AGUGCUU	ENSMUST00000006614.3|Epha2|ENSMUSG00000006445.4|Eph receptor A2
mm39_v1_chr3_+_16237371_16237447	1.1295	AGUGCUU	ENSMUST00000108345.9|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000191774.6|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000108346.5|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3
mm39_v1_chr3_-_142587678_142587787	1.11918	AGUGCUU	ENSMUST00000043812.15|Pkn2|ENSMUSG00000004591.17|protein kinase N2
mm39_v1_chr10_+_69932930_69933066	1.07445	AGUGCUU	ENSMUST00000147545.8|Ccdc6|ENSMUSG00000048701.14|coiled-coil domain containing 6
mm39_v1_chr19_-_47680528_47680535	1.05924	AGUGCUU	ENSMUST00000026045.14|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1	ENSMUST00000086923.6|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1
mm39_v1_chr7_+_122723365_122723446	1.04103	AGUGCUU	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr18_+_32296126_32296249	1.03913	AGUGCUU	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chr12_-_69245191_69245203	1.03121	AGUGCUU	ENSMUST00000021356.6|Dnaaf2|ENSMUSG00000020973.8|dynein, axonemal assembly factor 2
mm39_v1_chr15_+_95688712_95688755	1.02879	AGUGCUU	ENSMUST00000071874.8|Ano6|ENSMUSG00000064210.8|anoctamin 6
mm39_v1_chr12_+_86407886_86407905	1.02802	AGUGCUU	ENSMUST00000116402.10|Esrrb|ENSMUSG00000021255.18|estrogen related receptor, beta
mm39_v1_chr15_-_57998443_57998491	1.01351	AGUGCUU	ENSMUST00000038194.5|Atad2|ENSMUSG00000022360.9|ATPase family, AAA domain containing 2
mm39_v1_chr1_+_160733942_160734030	1.0067	AGUGCUU	ENSMUST00000161609.8|Rc3h1|ENSMUSG00000040423.12|RING CCCH (C3H) domains 1
mm39_v1_chr15_+_99476935_99476940	1.00591	AGUGCUU	ENSMUST00000023752.6|Aqp2|ENSMUSG00000023013.6|aquaporin 2
mm39_v1_chr19_+_18648088_18648213	0.999291	AGUGCUU	ENSMUST00000025632.11|Carnmt1|ENSMUSG00000024726.11|carnosine N-methyltransferase 1
mm39_v1_chr5_+_88868714_88868734	0.998249	AGUGCUU	ENSMUST00000113229.8|Mob1b|ENSMUSG00000006262.16|MOB kinase activator 1B	ENSMUST00000006424.8|Mob1b|ENSMUSG00000006262.16|MOB kinase activator 1B
mm39_v1_chr14_+_28226697_28226720	0.985653	AGUGCUU	ENSMUST00000063465.12|Wnt5a|ENSMUSG00000021994.16|wingless-type MMTV integration site family, member 5A
mm39_v1_chr11_-_86248395_86248442	0.972531	AGUGCUU	ENSMUST00000043624.9|Med13|ENSMUSG00000034297.15|mediator complex subunit 13
mm39_v1_chr6_-_127128007_127128023	0.958471	AGUGCUU	ENSMUST00000000188.12|Ccnd2|ENSMUSG00000000184.13|cyclin D2
mm39_v1_chrX_+_104807868_104807885	0.957993	AGUGCUU	ENSMUST00000033581.4|Fgf16|ENSMUSG00000031230.4|fibroblast growth factor 16
mm39_v1_chr18_-_61533434_61533520	0.940735	AGUGCUU	ENSMUST00000063307.6|Ppargc1b|ENSMUSG00000033871.15|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	ENSMUST00000075299.13|Ppargc1b|ENSMUSG00000033871.15|peroxisome proliferative activated receptor, gamma, coactivator 1 beta
mm39_v1_chr16_-_4377640_4377718	0.936665	AGUGCUU	ENSMUST00000005862.9|Tfap4|ENSMUSG00000005718.9|transcription factor AP4
mm39_v1_chr10_-_7656635_7656687	0.925245	AGUGCUU	ENSMUST00000124838.2|Ginm1|ENSMUSG00000040006.14|glycoprotein integral membrane 1	ENSMUST00000039763.14|Ginm1|ENSMUSG00000040006.14|glycoprotein integral membrane 1
mm39_v1_chr14_+_30201569_30201642	0.922988	AGUGCUU	ENSMUST00000022535.9|Dcp1a|ENSMUSG00000021962.10|decapping mRNA 1A	ENSMUST00000223658.2|Dcp1a|ENSMUSG00000021962.10|decapping mRNA 1A
mm39_v1_chr2_-_150531280_150531280	0.918591	AGUGCUU	ENSMUST00000046095.10|Vsx1|ENSMUSG00000033080.10|visual system homeobox 1
mm39_v1_chr14_+_36776775_36776811	0.91378	AGUGCUU	ENSMUST00000120052.2|Lrit1|ENSMUSG00000041044.10|leucine-rich repeat, immunoglobulin-like and transmembrane domains 1
mm39_v1_chr13_-_34529157_34529257	0.911953	AGUGCUU	ENSMUST00000040336.12|Slc22a23|ENSMUSG00000038267.16|solute carrier family 22, member 23
mm39_v1_chr1_+_133291302_133291320	0.909441	AGUGCUU	ENSMUST00000135222.9|Etnk2|ENSMUSG00000070644.14|ethanolamine kinase 2
mm39_v1_chr13_-_56283331_56283444	0.908686	AGUGCUU	ENSMUST00000045788.9|Macroh2a1|ENSMUSG00000015937.16|macroH2A.1 histone	ENSMUST00000016081.13|Macroh2a1|ENSMUSG00000015937.16|macroH2A.1 histone
mm39_v1_chr13_+_43551851_43551878	0.878537	AGUGCUU	ENSMUST00000071926.5|Nol7|ENSMUSG00000063200.5|nucleolar protein 7	ENSMUST00000222499.2|Nol7|ENSMUSG00000063200.5|nucleolar protein 7
mm39_v1_chr18_+_35962832_35962849	0.876992	AGUGCUU	ENSMUST00000060722.8|Cxxc5|ENSMUSG00000046668.10|CXXC finger 5
mm39_v1_chr15_+_12205095_12205124	0.871814	AGUGCUU	ENSMUST00000038172.16|Mtmr12|ENSMUSG00000039458.16|myotubularin related protein 12
mm39_v1_chr4_-_133615075_133615116	0.864607	AGUGCUU	ENSMUST00000003741.16|Rps6ka1|ENSMUSG00000003644.18|ribosomal protein S6 kinase polypeptide 1	ENSMUST00000105894.11|Rps6ka1|ENSMUSG00000003644.18|ribosomal protein S6 kinase polypeptide 1
mm39_v1_chr10_-_128727542_128727587	0.856731	AGUGCUU	ENSMUST00000026408.7|Gdf11|ENSMUSG00000025352.7|growth differentiation factor 11
mm39_v1_chr16_+_35803674_35803765	0.854582	AGUGCUU	ENSMUST00000004054.13|Kpna1|ENSMUSG00000022905.13|karyopherin (importin) alpha 1
mm39_v1_chr13_-_25015392_25015500	0.844346	AGUGCUU	ENSMUST00000006900.7|Acot13|ENSMUSG00000006717.8|acyl-CoA thioesterase 13
mm39_v1_chr13_-_38178059_38178193	0.835802	AGUGCUU	ENSMUST00000225319.2|Ssr1|ENSMUSG00000021427.11|signal sequence receptor, alpha	ENSMUST00000225246.2|Ssr1|ENSMUSG00000021427.11|signal sequence receptor, alpha	ENSMUST00000021864.8|Ssr1|ENSMUSG00000021427.11|signal sequence receptor, alpha
mm39_v1_chr1_-_152642032_152642069	0.834179	AGUGCUU	ENSMUST00000111859.8|Rgl1|ENSMUSG00000026482.14|ral guanine nucleotide dissociation stimulator,-like 1
mm39_v1_chr14_-_21102487_21102592	0.831407	AGUGCUU	ENSMUST00000154460.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit	ENSMUST00000130291.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit
mm39_v1_chr2_+_131028861_131028891	0.829932	AGUGCUU	ENSMUST00000028804.15|Cdc25b|ENSMUSG00000027330.17|cell division cycle 25B	ENSMUST00000079857.9|Cdc25b|ENSMUSG00000027330.17|cell division cycle 25B
mm39_v1_chr3_+_88857929_88857975	0.817415	AGUGCUU	ENSMUST00000186583.7|Ash1l|ENSMUSG00000028053.14|ASH1 like histone lysine methyltransferase
mm39_v1_chr15_+_37233280_37233318	0.792879	AGUGCUU	ENSMUST00000161405.8|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2	ENSMUST00000022895.15|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2	ENSMUST00000161532.2|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2
mm39_v1_chr5_-_67585137_67585157	0.7855	AGUGCUU	ENSMUST00000169190.5|Bend4|ENSMUSG00000092060.5|BEN domain containing 4
mm39_v1_chr1_+_93406686_93406783	0.778658	AGUGCUU	ENSMUST00000027495.15|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000136182.8|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000131175.9|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000179353.8|Septin2|ENSMUSG00000116048.2|septin 2	ENSMUST00000172165.8|Septin2|ENSMUSG00000116048.2|septin 2	ENSMUST00000153826.8|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000129211.8|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000168776.8|Septin2|ENSMUSG00000116048.2|septin 2
mm39_v1_chr7_-_127494750_127494821	0.774001	AGUGCUU	ENSMUST00000033074.8|Vkorc1|ENSMUSG00000096145.3|vitamin K epoxide reductase complex, subunit 1
mm39_v1_chr11_-_46280336_46280351	0.753843	AGUGCUU	ENSMUST00000020664.13|Itk|ENSMUSG00000020395.14|IL2 inducible T cell kinase
mm39_v1_chr12_+_70499869_70499881	0.744188	AGUGCUU	ENSMUST00000021471.13|Tmx1|ENSMUSG00000021072.13|thioredoxin-related transmembrane protein 1
mm39_v1_chr11_-_95896721_95896778	0.741875	AGUGCUU	ENSMUST00000013559.3|Igf2bp1|ENSMUSG00000013415.10|insulin-like growth factor 2 mRNA binding protein 1
mm39_v1_chr11_-_4544751_4544820	0.741411	AGUGCUU	ENSMUST00000109943.10|Mtmr3|ENSMUSG00000034354.18|myotubularin related protein 3
mm39_v1_chr15_-_50753061_50753118	0.740247	AGUGCUU	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr11_+_4207557_4207592	0.726049	AGUGCUU	ENSMUST00000066283.12|Lif|ENSMUSG00000034394.15|leukemia inhibitory factor
mm39_v1_chr18_+_70701260_70701469	0.716112	AGUGCUU	ENSMUST00000074058.11|Mbd2|ENSMUSG00000024513.17|methyl-CpG binding domain protein 2	ENSMUST00000114946.4|Mbd2|ENSMUSG00000024513.17|methyl-CpG binding domain protein 2
mm39_v1_chr6_-_37419030_37419117	0.708904	AGUGCUU	ENSMUST00000041093.6|Creb3l2|ENSMUSG00000038648.6|cAMP responsive element binding protein 3-like 2
mm39_v1_chr8_-_86281946_86282003	0.688881	AGUGCUU	ENSMUST00000034138.7|Dnaja2|ENSMUSG00000031701.7|DnaJ heat shock protein family (Hsp40) member A2
mm39_v1_chr8_+_47192767_47192829	0.666622	AGUGCUU	ENSMUST00000034041.9|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2	ENSMUST00000208507.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2	ENSMUST00000207105.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2
mm39_v1_chr6_+_72391283_72391302	0.663684	AGUGCUU	ENSMUST00000065906.9|Ggcx|ENSMUSG00000053460.9|gamma-glutamyl carboxylase
mm39_v1_chr2_-_33358513_33358582	0.647201	AGUGCUU	ENSMUST00000113156.2|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43	ENSMUST00000028125.12|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43	ENSMUST00000126442.2|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43
mm39_v1_chr7_-_74204222_74204436	0.639637	AGUGCUU	ENSMUST00000134539.2|Slco3a1|ENSMUSG00000025790.15|solute carrier organic anion transporter family, member 3a1	ENSMUST00000026897.14|Slco3a1|ENSMUSG00000025790.15|solute carrier organic anion transporter family, member 3a1	ENSMUST00000098371.9|Slco3a1|ENSMUSG00000025790.15|solute carrier organic anion transporter family, member 3a1
mm39_v1_chr4_-_118148537_118148602	0.619901	AGUGCUU	ENSMUST00000049074.13|Ptprf|ENSMUSG00000033295.15|protein tyrosine phosphatase, receptor type, F
mm39_v1_chr14_-_8457069_8457272	0.600405	AGUGCUU	ENSMUST00000022257.4|Atxn7|ENSMUSG00000021738.6|ataxin 7
mm39_v1_chr9_-_101128976_101129003	0.597822	AGUGCUU	ENSMUST00000075941.12|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr3_+_90161470_90161640	0.593529	AGUGCUU	ENSMUST00000029545.15|Crtc2|ENSMUSG00000027936.19|CREB regulated transcription coactivator 2
mm39_v1_chr10_+_93476903_93476918	0.592533	AGUGCUU	ENSMUST00000020204.5|Ntn4|ENSMUSG00000020019.5|netrin 4
mm39_v1_chr12_-_85386120_85386169	0.586629	AGUGCUU	ENSMUST00000040992.8|Nek9|ENSMUSG00000034290.10|NIMA (never in mitosis gene a)-related expressed kinase 9
mm39_v1_chr1_+_138891447_138891539	0.586522	AGUGCUU	ENSMUST00000168527.8|Dennd1b|ENSMUSG00000056268.16|DENN/MADD domain containing 1B
mm39_v1_chr9_-_104140099_104140149	0.581401	AGUGCUU	ENSMUST00000035170.13|Dnajc13|ENSMUSG00000032560.15|DnaJ heat shock protein family (Hsp40) member C13
mm39_v1_chr1_+_6284823_6284907	0.578994	AGUGCUU	ENSMUST00000027040.13|Rb1cc1|ENSMUSG00000025907.15|RB1-inducible coiled-coil 1
mm39_v1_chr2_+_72306503_72306604	0.575431	AGUGCUU	ENSMUST00000102691.11|Cdca7|ENSMUSG00000055612.16|cell division cycle associated 7	ENSMUST00000157019.2|Cdca7|ENSMUSG00000055612.16|cell division cycle associated 7
mm39_v1_chr11_+_75422516_75422569	0.56587	AGUGCUU	ENSMUST00000149727.8|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2	ENSMUST00000108433.8|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2	ENSMUST00000042561.14|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2	ENSMUST00000143035.8|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2
mm39_v1_chr1_+_139349912_139350120	0.554656	AGUGCUU	ENSMUST00000200243.5|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41	ENSMUST00000039867.10|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41
mm39_v1_chr8_+_88999031_88999080	0.553852	AGUGCUU	ENSMUST00000169037.9|Adcy7|ENSMUSG00000031659.14|adenylate cyclase 7
mm39_v1_chr2_+_173501553_173501664	0.551123	AGUGCUU	ENSMUST00000029024.10|Rab22a|ENSMUSG00000027519.11|RAB22A, member RAS oncogene family	ENSMUST00000109110.4|Rab22a|ENSMUSG00000027519.11|RAB22A, member RAS oncogene family
mm39_v1_chr6_+_134897364_134897394	0.549029	AGUGCUU	ENSMUST00000067327.11|Cdkn1b|ENSMUSG00000003031.15|cyclin-dependent kinase inhibitor 1B	ENSMUST00000003115.9|Cdkn1b|ENSMUSG00000003031.15|cyclin-dependent kinase inhibitor 1B
mm39_v1_chr5_-_140375010_140375019	0.548882	AGUGCUU	ENSMUST00000031539.12|Snx8|ENSMUSG00000029560.13|sorting nexin 8
mm39_v1_chr7_+_79944198_79944253	0.536959	AGUGCUU	ENSMUST00000163812.9|Prc1|ENSMUSG00000038943.17|protein regulator of cytokinesis 1	ENSMUST00000047558.14|Prc1|ENSMUSG00000038943.17|protein regulator of cytokinesis 1	ENSMUST00000174199.8|Prc1|ENSMUSG00000038943.17|protein regulator of cytokinesis 1	ENSMUST00000173824.8|Prc1|ENSMUSG00000038943.17|protein regulator of cytokinesis 1	ENSMUST00000174172.8|Prc1|ENSMUSG00000038943.17|protein regulator of cytokinesis 1
mm39_v1_chr13_+_55357585_55357602	0.526936	AGUGCUU	ENSMUST00000224973.2|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1	ENSMUST00000099490.3|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1
mm39_v1_chr19_-_28657477_28657523	0.525929	AGUGCUU	ENSMUST00000162022.8|Glis3|ENSMUSG00000052942.14|GLIS family zinc finger 3	ENSMUST00000112612.9|Glis3|ENSMUSG00000052942.14|GLIS family zinc finger 3
mm39_v1_chr3_+_88439616_88439703	0.520133	AGUGCUU	ENSMUST00000172699.2|Mex3a|ENSMUSG00000074480.5|mex3 RNA binding family member A
mm39_v1_chr19_-_60569323_60569468	0.518104	AGUGCUU	ENSMUST00000111460.5|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1	ENSMUST00000166712.9|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1	ENSMUST00000081790.15|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1
mm39_v1_chr15_-_93173032_93173060	0.515111	AGUGCUU	ENSMUST00000057896.5|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000049484.13|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000230063.2|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1
mm39_v1_chr7_+_132532841_132532871	0.508746	AGUGCUU	ENSMUST00000106157.8|Zranb1|ENSMUSG00000030967.16|zinc finger, RAN-binding domain containing 1
mm39_v1_chr2_+_68691778_68691854	0.490115	AGUGCUU	ENSMUST00000028426.9|Cers6|ENSMUSG00000027035.11|ceramide synthase 6
mm39_v1_chr11_-_93859064_93859119	0.479811	AGUGCUU	ENSMUST00000107844.3|Nme1|ENSMUSG00000037601.12|NME/NM23 nucleoside diphosphate kinase 1	ENSMUST00000170303.2|Gm20390|ENSMUSG00000091228.2|predicted gene 20390
mm39_v1_chr3_+_32490300_32490300	0.479094	AGUGCUU	ENSMUST00000029201.14|Pik3ca|ENSMUSG00000027665.14|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
mm39_v1_chr1_+_38037086_38037096	0.475424	AGUGCUU	ENSMUST00000027252.8|Eif5b|ENSMUSG00000026083.13|eukaryotic translation initiation factor 5B
mm39_v1_chr7_-_120673761_120673795	0.474839	AGUGCUU	ENSMUST00000047194.4|Igsf6|ENSMUSG00000035004.4|immunoglobulin superfamily, member 6
mm39_v1_chr6_-_28261881_28261942	0.462596	AGUGCUU	ENSMUST00000115320.8|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000123098.8|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000115321.9|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000155494.2|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800
mm39_v1_chr7_+_51528788_51528813	0.459492	AGUGCUU	ENSMUST00000107591.9|Gas2|ENSMUSG00000030498.16|growth arrest specific 2
mm39_v1_chr13_-_96678987_96679032	0.439792	AGUGCUU	ENSMUST00000022172.12|Polk|ENSMUSG00000021668.16|polymerase (DNA directed), kappa
mm39_v1_chr7_+_96730763_96730793	0.430199	AGUGCUU	ENSMUST00000004622.7|Gab2|ENSMUSG00000004508.7|growth factor receptor bound protein 2-associated protein 2
mm39_v1_chr13_-_45155616_45155627	0.429962	AGUGCUU	ENSMUST00000072329.15|Dtnbp1|ENSMUSG00000057531.15|dystrobrevin binding protein 1
mm39_v1_chr10_+_128295159_128295197	0.423804	AGUGCUU	ENSMUST00000026433.9|Smarcc2|ENSMUSG00000025369.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	ENSMUST00000099131.11|Smarcc2|ENSMUSG00000025369.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	ENSMUST00000105235.10|Smarcc2|ENSMUSG00000025369.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
mm39_v1_chr8_+_11808349_11808375	0.402635	AGUGCUU	ENSMUST00000074856.13|Arhgef7|ENSMUSG00000031511.17|Rho guanine nucleotide exchange factor (GEF7)	ENSMUST00000098938.9|Arhgef7|ENSMUSG00000031511.17|Rho guanine nucleotide exchange factor (GEF7)
mm39_v1_chr9_+_58730695_58730695	0.401627	AGUGCUU	ENSMUST00000034889.10|Hcn4|ENSMUSG00000032338.10|hyperpolarization-activated, cyclic nucleotide-gated K+ 4
mm39_v1_chr16_-_19525122_19525143	0.399862	AGUGCUU	ENSMUST00000081880.7|Lamp3|ENSMUSG00000041247.9|lysosomal-associated membrane protein 3
mm39_v1_chr12_-_54909568_54909706	0.398474	AGUGCUU	ENSMUST00000078124.8|Cfl2|ENSMUSG00000062929.9|cofilin 2, muscle
mm39_v1_chr10_+_4561974_4562075	0.391876	AGUGCUU	ENSMUST00000105590.8|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)	ENSMUST00000067086.14|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)
mm39_v1_chr9_-_42383494_42383561	0.381163	AGUGCUU	ENSMUST00000128959.8|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like	ENSMUST00000066148.12|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like	ENSMUST00000138506.8|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like
mm39_v1_chr6_-_83418656_83418666	0.377557	AGUGCUU	ENSMUST00000089622.11|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
mm39_v1_chr6_+_85400868_85400868	0.374992	AGUGCUU	ENSMUST00000089578.9|Noto|ENSMUSG00000068302.9|notochord homeobox
mm39_v1_chr6_-_83752749_83752808	0.369878	AGUGCUU	ENSMUST00000014892.8|Tex261|ENSMUSG00000014748.14|testis expressed gene 261
mm39_v1_chr1_-_157240138_157240191	0.36297	AGUGCUU	ENSMUST00000078308.13|Rasal2|ENSMUSG00000070565.12|RAS protein activator like 2
mm39_v1_chr2_+_75662511_75662538	0.362743	AGUGCUU	ENSMUST00000047232.14|Agps|ENSMUSG00000042410.17|alkylglycerone phosphate synthase	ENSMUST00000111952.9|Agps|ENSMUSG00000042410.17|alkylglycerone phosphate synthase
mm39_v1_chr13_+_14238361_14238407	0.358367	AGUGCUU	ENSMUST00000129488.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110536.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110534.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000039538.15|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110533.2|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)
mm39_v1_chr7_+_116980173_116980249	0.345877	AGUGCUU	ENSMUST00000032892.7|Xylt1|ENSMUSG00000030657.12|xylosyltransferase 1
mm39_v1_chr11_+_70453806_70453896	0.345853	AGUGCUU	ENSMUST00000079244.12|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)	ENSMUST00000102558.11|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)
mm39_v1_chr2_-_34262012_34262056	0.342739	AGUGCUU	ENSMUST00000113132.9|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3	ENSMUST00000040638.15|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3
mm39_v1_chr2_-_19002932_19002971	0.337921	AGUGCUU	ENSMUST00000006912.12|Pip4k2a|ENSMUSG00000026737.13|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
mm39_v1_chr19_+_43678109_43678133	0.33763	AGUGCUU	ENSMUST00000081079.6|Entpd7|ENSMUSG00000025192.14|ectonucleoside triphosphate diphosphohydrolase 7
mm39_v1_chr11_-_97078698_97078752	0.332268	AGUGCUU	ENSMUST00000001479.5|Kpnb1|ENSMUSG00000001440.6|karyopherin (importin) beta 1
mm39_v1_chr17_+_25407352_25407392	0.330219	AGUGCUU	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr4_-_151142351_151142444	0.318006	AGUGCUU	ENSMUST00000030797.4|Vamp3|ENSMUSG00000028955.4|vesicle-associated membrane protein 3
mm39_v1_chr15_+_40518414_40518450	0.316279	AGUGCUU	ENSMUST00000053467.6|Zfpm2|ENSMUSG00000022306.10|zinc finger protein, multitype 2
mm39_v1_chr2_-_131871725_131871921	0.312071	AGUGCUU	ENSMUST00000028814.15|Rassf2|ENSMUSG00000027339.16|Ras association (RalGDS/AF-6) domain family member 2
mm39_v1_chr3_-_87081939_87082054	0.302984	AGUGCUU	ENSMUST00000159976.8|Kirrel|ENSMUSG00000041734.16|kirre like nephrin family adhesion molecule 1	ENSMUST00000107618.9|Kirrel|ENSMUSG00000041734.16|kirre like nephrin family adhesion molecule 1
mm39_v1_chr10_+_93983844_93983885	0.289231	AGUGCUU	ENSMUST00000105290.9|Nr2c1|ENSMUSG00000005897.15|nuclear receptor subfamily 2, group C, member 1
mm39_v1_chr17_+_26934617_26934698	0.288128	AGUGCUU	ENSMUST00000062519.14|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000144221.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000142539.8|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000151681.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor
mm39_v1_chr19_+_27194757_27194825	0.281466	AGUGCUU	ENSMUST00000047645.13|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor	ENSMUST00000167487.8|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor
mm39_v1_chrX_+_10118544_10118596	0.280471	AGUGCUU	ENSMUST00000049910.13|Otc|ENSMUSG00000031173.14|ornithine transcarbamylase
mm39_v1_chr5_+_53713137_53713176	0.278834	AGUGCUU	ENSMUST00000087360.9|Rbpj|ENSMUSG00000039191.13|recombination signal binding protein for immunoglobulin kappa J region
mm39_v1_chr5_-_38719025_38719149	0.272955	AGUGCUU	ENSMUST00000005234.13|Wdr1|ENSMUSG00000005103.13|WD repeat domain 1
mm39_v1_chr12_+_69418886_69418946	0.261635	AGUGCUU	ENSMUST00000050063.9|Arf6|ENSMUSG00000044147.9|ADP-ribosylation factor 6
mm39_v1_chr5_-_76452365_76452398	0.260911	AGUGCUU	ENSMUST00000075159.5|Clock|ENSMUSG00000029238.12|circadian locomotor output cycles kaput
mm39_v1_chr4_+_62883796_62883854	0.25547	AGUGCUU	ENSMUST00000030043.13|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000107415.8|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000064814.6|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618
mm39_v1_chr14_-_72947422_72947467	0.249669	AGUGCUU	ENSMUST00000089017.12|Fndc3a|ENSMUSG00000033487.15|fibronectin type III domain containing 3A
mm39_v1_chr2_+_16361081_16361127	0.248015	AGUGCUU	ENSMUST00000028081.13|Plxdc2|ENSMUSG00000026748.14|plexin domain containing 2
mm39_v1_chr6_-_89339581_89339602	0.241853	AGUGCUU	ENSMUST00000163139.8|Plxna1|ENSMUSG00000030084.12|plexin A1
mm39_v1_chr2_-_39116457_39116468	0.236914	AGUGCUU	ENSMUST00000028087.6|Ppp6c|ENSMUSG00000026753.6|protein phosphatase 6, catalytic subunit
mm39_v1_chr8_-_114575247_114575406	0.232449	AGUGCUU	ENSMUST00000093113.5|Adamts18|ENSMUSG00000053399.10|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
mm39_v1_chr15_-_96597610_96597617	0.223649	AGUGCUU	ENSMUST00000023099.8|Slc38a2|ENSMUSG00000022462.8|solute carrier family 38, member 2
mm39_v1_chr4_-_62443273_62443317	0.223625	AGUGCUU	ENSMUST00000030091.10|Pole3|ENSMUSG00000028394.10|polymerase (DNA directed), epsilon 3 (p17 subunit)
mm39_v1_chr1_+_130645056_130645070	0.216749	AGUGCUU	ENSMUST00000049813.6|Yod1|ENSMUSG00000046404.6|YOD1 deubiquitinase
mm39_v1_chr19_+_3817396_3817523	0.205795	AGUGCUU	ENSMUST00000052699.13|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113974.11|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113972.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113973.8|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113977.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113968.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B
mm39_v1_chr5_+_23639432_23639478	0.204299	AGUGCUU	ENSMUST00000094962.9|Kmt2e|ENSMUSG00000029004.16|lysine (K)-specific methyltransferase 2E	ENSMUST00000115128.8|Kmt2e|ENSMUSG00000029004.16|lysine (K)-specific methyltransferase 2E
mm39_v1_chr14_+_48683797_48683886	0.198977	AGUGCUU	ENSMUST00000111735.10|Tmem260|ENSMUSG00000036339.19|transmembrane protein 260
mm39_v1_chr14_+_67470884_67471035	0.197154	AGUGCUU	ENSMUST00000176161.8|Ebf2|ENSMUSG00000022053.14|early B cell factor 2
mm39_v1_chr8_-_84874468_84874571	0.193513	AGUGCUU	ENSMUST00000117424.9|Cc2d1a|ENSMUSG00000036686.17|coiled-coil and C2 domain containing 1A	ENSMUST00000040383.9|Cc2d1a|ENSMUSG00000036686.17|coiled-coil and C2 domain containing 1A
mm39_v1_chr6_-_51446752_51446834	0.191358	AGUGCUU	ENSMUST00000204188.3|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000203220.3|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000114459.8|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000090002.10|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1
mm39_v1_chr1_-_64160557_64160650	0.19121	AGUGCUU	ENSMUST00000055001.10|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)	ENSMUST00000114086.8|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chr1_-_190711151_190711199	0.189031	AGUGCUU	ENSMUST00000047409.9|Vash2|ENSMUSG00000037568.13|vasohibin 2
mm39_v1_chr5_-_148489457_148489498	0.186115	AGUGCUU	ENSMUST00000079324.14|Ubl3|ENSMUSG00000001687.16|ubiquitin-like 3
mm39_v1_chr11_-_70910058_70910129	0.182513	AGUGCUU	ENSMUST00000108523.10|Derl2|ENSMUSG00000018442.14|Der1-like domain family, member 2	ENSMUST00000143850.8|Derl2|ENSMUSG00000018442.14|Der1-like domain family, member 2
mm39_v1_chr12_+_105750952_105751131	0.178021	AGUGCUU	ENSMUST00000109901.9|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000168186.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000163473.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000170540.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000166735.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000170002.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha
mm39_v1_chr6_-_118174679_118174704	0.177879	AGUGCUU	ENSMUST00000088790.9|Ret|ENSMUSG00000030110.14|ret proto-oncogene
mm39_v1_chr14_-_58127698_58127777	0.175712	AGUGCUU	ENSMUST00000089473.5|Zdhhc20|ENSMUSG00000021969.9|zinc finger, DHHC domain containing 20
mm39_v1_chr6_-_72416531_72416548	0.173092	AGUGCUU	ENSMUST00000205335.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000206692.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000059472.10|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha
mm39_v1_chr1_+_23801007_23801080	0.173089	AGUGCUU	ENSMUST00000063663.6|B3gat2|ENSMUSG00000026156.9|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
mm39_v1_chr5_-_147662798_147662833	0.164394	AGUGCUU	ENSMUST00000110529.6|Flt1|ENSMUSG00000029648.14|FMS-like tyrosine kinase 1	ENSMUST00000031653.12|Flt1|ENSMUSG00000029648.14|FMS-like tyrosine kinase 1
mm39_v1_chr11_-_59118988_59119096	0.162759	AGUGCUU	ENSMUST00000163300.8|Arf1|ENSMUSG00000048076.15|ADP-ribosylation factor 1	ENSMUST00000061242.8|Arf1|ENSMUSG00000048076.15|ADP-ribosylation factor 1
mm39_v1_chr3_-_133250129_133250174	0.160135	AGUGCUU	ENSMUST00000196398.5|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2	ENSMUST00000098603.8|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2
mm39_v1_chr4_+_58285957_58285975	0.154576	AGUGCUU	ENSMUST00000081919.12|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000177951.8|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000098059.10|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000179951.2|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000102893.10|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000084578.12|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000098057.10|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase
mm39_v1_chr2_-_25873189_25873304	0.149386	AGUGCUU	ENSMUST00000114167.9|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000091268.11|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000183461.8|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1
mm39_v1_chr11_+_74721733_74721746	0.145864	AGUGCUU	ENSMUST00000000291.9|Mnt|ENSMUSG00000000282.13|max binding protein
mm39_v1_chr2_+_152135748_152135781	0.141639	AGUGCUU	ENSMUST00000028963.14|Tbc1d20|ENSMUSG00000027465.14|TBC1 domain family, member 20	ENSMUST00000144252.8|Tbc1d20|ENSMUSG00000027465.14|TBC1 domain family, member 20
mm39_v1_chr17_+_87061117_87061137	0.137117	AGUGCUU	ENSMUST00000024954.11|Epas1|ENSMUSG00000024140.11|endothelial PAS domain protein 1
mm39_v1_chr7_-_35502392_35502433	0.129913	AGUGCUU	ENSMUST00000187282.3|Zfp507|ENSMUSG00000044452.11|zinc finger protein 507	ENSMUST00000205670.2|Zfp507|ENSMUSG00000044452.11|zinc finger protein 507	ENSMUST00000061586.11|Zfp507|ENSMUSG00000044452.11|zinc finger protein 507
mm39_v1_chr13_+_112600604_112600696	0.12899	AGUGCUU	ENSMUST00000183663.8|Il6st|ENSMUSG00000021756.13|interleukin 6 signal transducer	ENSMUST00000184311.8|Il6st|ENSMUSG00000021756.13|interleukin 6 signal transducer	ENSMUST00000183886.8|Il6st|ENSMUSG00000021756.13|interleukin 6 signal transducer
mm39_v1_chr6_+_52690714_52690785	0.124173	AGUGCUU	ENSMUST00000080723.11|Tax1bp1|ENSMUSG00000004535.13|Tax1 (human T cell leukemia virus type I) binding protein 1	ENSMUST00000149588.8|Tax1bp1|ENSMUSG00000004535.13|Tax1 (human T cell leukemia virus type I) binding protein 1
mm39_v1_chr19_+_44551280_44551318	0.122678	AGUGCUU	ENSMUST00000040455.5|Hif1an|ENSMUSG00000036450.5|hypoxia-inducible factor 1, alpha subunit inhibitor
mm39_v1_chr11_+_70735572_70735642	0.119322	AGUGCUU	ENSMUST00000076270.13|Rabep1|ENSMUSG00000020817.17|rabaptin, RAB GTPase binding effector protein 1	ENSMUST00000179114.8|Rabep1|ENSMUSG00000020817.17|rabaptin, RAB GTPase binding effector protein 1	ENSMUST00000100928.11|Rabep1|ENSMUSG00000020817.17|rabaptin, RAB GTPase binding effector protein 1
mm39_v1_chr9_-_123680927_123680974	0.114454	AGUGCUU	ENSMUST00000184082.3|Fyco1|ENSMUSG00000025241.17|FYVE and coiled-coil domain containing 1	ENSMUST00000167595.9|Fyco1|ENSMUSG00000025241.17|FYVE and coiled-coil domain containing 1
mm39_v1_chr1_-_151965876_151965918	0.110305	AGUGCUU	ENSMUST00000044581.14|1700025G04Rik|ENSMUSG00000032666.17|RIKEN cDNA 1700025G04 gene
mm39_v1_chr4_-_101122433_101122479	0.106246	AGUGCUU	ENSMUST00000149297.2|Jak1|ENSMUSG00000028530.15|Janus kinase 1	ENSMUST00000102781.10|Jak1|ENSMUSG00000028530.15|Janus kinase 1
mm39_v1_chr10_-_85752765_85752870	0.102903	AGUGCUU	ENSMUST00000037646.9|Prdm4|ENSMUSG00000035529.11|PR domain containing 4	ENSMUST00000220032.2|Prdm4|ENSMUSG00000035529.11|PR domain containing 4
mm39_v1_chr1_-_119765343_119765403	0.0907384	AGUGCUU	ENSMUST00000064091.12|Ptpn4|ENSMUSG00000026384.14|protein tyrosine phosphatase, non-receptor type 4
mm39_v1_chr13_-_53531391_53531433	0.0863431	AGUGCUU	ENSMUST00000021920.8|Sptlc1|ENSMUSG00000021468.9|serine palmitoyltransferase, long chain base subunit 1
mm39_v1_chr11_-_103640640_103640655	0.0825126	AGUGCUU	ENSMUST00000018630.3|Wnt9b|ENSMUSG00000018486.3|wingless-type MMTV integration site family, member 9B
mm39_v1_chrX_+_52001108_52001238	0.0701339	AGUGCUU	ENSMUST00000078944.13|Phf6|ENSMUSG00000025626.17|PHD finger protein 6	ENSMUST00000101587.10|Phf6|ENSMUSG00000025626.17|PHD finger protein 6	ENSMUST00000154864.4|Phf6|ENSMUSG00000025626.17|PHD finger protein 6
mm39_v1_chr6_+_140568366_140568389	0.0674501	AGUGCUU	ENSMUST00000032359.15|Aebp2|ENSMUSG00000030232.19|AE binding protein 2
mm39_v1_chr1_-_156767123_156767186	0.0629614	AGUGCUU	ENSMUST00000189316.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000190648.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000172057.8|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000191605.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2
mm39_v1_chr13_-_64300964_64301043	0.0574501	AGUGCUU	ENSMUST00000059817.12|Zfp367|ENSMUSG00000044934.14|zinc finger protein 367	ENSMUST00000117241.2|Zfp367|ENSMUSG00000044934.14|zinc finger protein 367
mm39_v1_chr2_-_37333109_37333210	0.0489797	AGUGCUU	ENSMUST00000102789.3|Zbtb26|ENSMUSG00000050714.10|zinc finger and BTB domain containing 26	ENSMUST00000067043.5|Zbtb26|ENSMUSG00000050714.10|zinc finger and BTB domain containing 26	ENSMUST00000112932.2|Zbtb6|ENSMUSG00000066798.4|zinc finger and BTB domain containing 6
mm39_v1_chr12_+_16944896_16944904	0.0436345	AGUGCUU	ENSMUST00000020904.8|Rock2|ENSMUSG00000020580.11|Rho-associated coiled-coil containing protein kinase 2
mm39_v1_chr2_-_35994072_35994085	0.032009	AGUGCUU	ENSMUST00000112961.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112966.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6
mm39_v1_chr12_-_98541293_98541386	0.0315422	AGUGCUU	ENSMUST00000110113.3|Kcnk10|ENSMUSG00000033854.11|potassium channel, subfamily K, member 10
mm39_v1_chr8_-_121316043_121316043	0.0285225	AGUGCUU	ENSMUST00000034278.6|Gins2|ENSMUSG00000031821.12|GINS complex subunit 2 (Psf2 homolog)
mm39_v1_chr4_-_6990774_6990823	0.0134891	AGUGCUU	ENSMUST00000039987.4|Tox|ENSMUSG00000041272.12|thymocyte selection-associated high mobility group box
mm39_v1_chr18_+_57487800_57487869	0.0104612	AGUGCUU	ENSMUST00000025490.10|Prrc1|ENSMUSG00000024594.10|proline-rich coiled-coil 1
mm39_v1_chr15_+_78993111_78993186	0.00811753	AGUGCUU	ENSMUST00000040320.10|Micall1|ENSMUSG00000033039.11|microtubule associated monooxygenase, calponin and LIM domain containing -like 1
mm39_v1_chr11_-_115405200_115405219	0.00697858	AGUGCUU	ENSMUST00000021083.7|Jpt1|ENSMUSG00000020737.13|Jupiter microtubule associated homolog 1
