mm39_v1_chr5_-_123320767_123320794	4.87438	AUAAAGU	ENSMUST00000154713.8|Hpd|ENSMUSG00000029445.14|4-hydroxyphenylpyruvic acid dioxygenase	ENSMUST00000031398.14|Hpd|ENSMUSG00000029445.14|4-hydroxyphenylpyruvic acid dioxygenase
mm39_v1_chr3_+_82915031_82915175	3.08555	AUAAAGU	ENSMUST00000048486.13|Fgg|ENSMUSG00000033860.14|fibrinogen gamma chain	ENSMUST00000194175.2|Fgg|ENSMUSG00000033860.14|fibrinogen gamma chain
mm39_v1_chr1_-_189902868_189902942	2.53815	AUAAAGU	ENSMUST00000177288.4|Prox1|ENSMUSG00000010175.14|prospero homeobox 1	ENSMUST00000175916.8|Prox1|ENSMUSG00000010175.14|prospero homeobox 1
mm39_v1_chr2_-_113883285_113883368	2.40526	AUAAAGU	ENSMUST00000090269.7|Actc1|ENSMUSG00000068614.8|actin, alpha, cardiac muscle 1
mm39_v1_chr8_+_60958931_60958966	1.83062	AUAAAGU	ENSMUST00000079472.4|Aadat|ENSMUSG00000057228.7|aminoadipate aminotransferase
mm39_v1_chr1_+_67162176_67162196	1.70052	AUAAAGU	ENSMUST00000027144.8|Cps1|ENSMUSG00000025991.9|carbamoyl-phosphate synthetase 1
mm39_v1_chr17_-_56416799_56416807	1.66602	AUAAAGU	ENSMUST00000002908.8|Plin4|ENSMUSG00000002831.15|perilipin 4	ENSMUST00000238734.2|Plin4|ENSMUSG00000002831.15|perilipin 4	ENSMUST00000190703.7|Plin4|ENSMUSG00000002831.15|perilipin 4
mm39_v1_chr16_+_42727926_42728047	1.64633	AUAAAGU	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr18_+_64473091_64473114	1.59902	AUAAAGU	ENSMUST00000175965.10|Onecut2|ENSMUSG00000045991.20|one cut domain, family member 2
mm39_v1_chr17_+_87061117_87061137	1.58075	AUAAAGU	ENSMUST00000024954.11|Epas1|ENSMUSG00000024140.11|endothelial PAS domain protein 1
mm39_v1_chr13_+_91889626_91889650	1.55443	AUAAAGU	ENSMUST00000022120.5|Acot12|ENSMUSG00000021620.5|acyl-CoA thioesterase 12
mm39_v1_chr3_-_18297451_18297512	1.4037	AUAAAGU	ENSMUST00000035625.7|Cyp7b1|ENSMUSG00000039519.7|cytochrome P450, family 7, subfamily b, polypeptide 1
mm39_v1_chr3_-_81883509_81883509	1.37814	AUAAAGU	ENSMUST00000029645.14|Tdo2|ENSMUSG00000028011.17|tryptophan 2,3-dioxygenase	ENSMUST00000193879.2|Tdo2|ENSMUSG00000028011.17|tryptophan 2,3-dioxygenase
mm39_v1_chr3_+_96432479_96432502	1.34314	AUAAAGU	ENSMUST00000049208.11|Hjv|ENSMUSG00000038403.11|hemojuvelin BMP co-receptor
mm39_v1_chr5_+_89034666_89034684	1.29846	AUAAAGU	ENSMUST00000148750.8|Slc4a4|ENSMUSG00000060961.17|solute carrier family 4 (anion exchanger), member 4
mm39_v1_chr10_+_116137277_116137333	1.22057	AUAAAGU	ENSMUST00000092167.7|Ptprb|ENSMUSG00000020154.11|protein tyrosine phosphatase, receptor type, B
mm39_v1_chr4_+_86792633_86792676	1.17157	AUAAAGU	ENSMUST00000045224.14|Acer2|ENSMUSG00000038007.15|alkaline ceramidase 2	ENSMUST00000084433.5|Acer2|ENSMUSG00000038007.15|alkaline ceramidase 2
mm39_v1_chr3_-_115508680_115508721	1.09022	AUAAAGU	ENSMUST00000055676.4|S1pr1|ENSMUSG00000045092.9|sphingosine-1-phosphate receptor 1
mm39_v1_chr9_-_106124917_106124968	1.08684	AUAAAGU	ENSMUST00000112524.9|Alas1|ENSMUSG00000032786.17|aminolevulinic acid synthase 1	ENSMUST00000219129.2|Alas1|ENSMUSG00000032786.17|aminolevulinic acid synthase 1
mm39_v1_chr4_-_53159885_53159900	1.08655	AUAAAGU	ENSMUST00000030010.4|Abca1|ENSMUSG00000015243.5|ATP-binding cassette, sub-family A (ABC1), member 1
mm39_v1_chr4_-_115504907_115504925	1.06813	AUAAAGU	ENSMUST00000102707.10|Cyp4b1|ENSMUSG00000028713.18|cytochrome P450, family 4, subfamily b, polypeptide 1
mm39_v1_chr9_+_74769166_74769203	1.03158	AUAAAGU	ENSMUST00000056006.11|Onecut1|ENSMUSG00000043013.11|one cut domain, family member 1
mm39_v1_chr8_-_41586713_41586793	1.01437	AUAAAGU	ENSMUST00000155055.2|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1	ENSMUST00000059115.13|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1	ENSMUST00000145860.2|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1
mm39_v1_chr3_-_82811269_82811288	0.993227	AUAAAGU	ENSMUST00000029632.7|Lrat|ENSMUSG00000028003.7|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)
mm39_v1_chr1_-_74163575_74163626	0.970365	AUAAAGU	ENSMUST00000169786.8|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000212888.2|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000191104.7|Tns1|ENSMUSG00000055322.17|tensin 1
mm39_v1_chr4_-_151946219_151946333	0.97012	AUAAAGU	ENSMUST00000097774.9|Camta1|ENSMUSG00000014592.22|calmodulin binding transcription activator 1
mm39_v1_chrX_+_81992467_81992521	0.963414	AUAAAGU	ENSMUST00000114000.8|Dmd|ENSMUSG00000045103.20|dystrophin, muscular dystrophy
mm39_v1_chr18_-_12369351_12369463	0.958754	AUAAAGU	ENSMUST00000025279.6|Npc1|ENSMUSG00000024413.15|NPC intracellular cholesterol transporter 1
mm39_v1_chr7_-_16348862_16348946	0.956701	AUAAAGU	ENSMUST00000171937.2|Arhgap35|ENSMUSG00000058230.13|Rho GTPase activating protein 35	ENSMUST00000075845.11|Arhgap35|ENSMUSG00000058230.13|Rho GTPase activating protein 35
mm39_v1_chr4_-_19708910_19709004	0.941579	AUAAAGU	ENSMUST00000108246.9|Wwp1|ENSMUSG00000041058.16|WW domain containing E3 ubiquitin protein ligase 1
mm39_v1_chr9_+_118435755_118435823	0.937281	AUAAAGU	ENSMUST00000044165.14|Itga9|ENSMUSG00000039115.14|integrin alpha 9
mm39_v1_chr4_+_20008357_20008452	0.924995	AUAAAGU	ENSMUST00000117632.8|Ttpa|ENSMUSG00000073988.14|tocopherol (alpha) transfer protein	ENSMUST00000098244.2|Ttpa|ENSMUSG00000073988.14|tocopherol (alpha) transfer protein
mm39_v1_chr16_-_85599994_85600009	0.920393	AUAAAGU	ENSMUST00000023610.15|Adamts1|ENSMUSG00000022893.15|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1
mm39_v1_chr16_+_31482745_31482857	0.903918	AUAAAGU	ENSMUST00000100001.10|Dlg1|ENSMUSG00000022770.18|discs large MAGUK scaffold protein 1	ENSMUST00000064477.14|Dlg1|ENSMUSG00000022770.18|discs large MAGUK scaffold protein 1
mm39_v1_chr13_+_81031512_81031543	0.889595	AUAAAGU	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr10_+_87695117_87695128	0.864052	AUAAAGU	ENSMUST00000105300.9|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1
mm39_v1_chr10_-_7656635_7656687	0.850611	AUAAAGU	ENSMUST00000124838.2|Ginm1|ENSMUSG00000040006.14|glycoprotein integral membrane 1	ENSMUST00000039763.14|Ginm1|ENSMUSG00000040006.14|glycoprotein integral membrane 1
mm39_v1_chr15_-_31531122_31531215	0.842799	AUAAAGU	ENSMUST00000090227.6|Marchf6|ENSMUSG00000039100.11|membrane associated ring-CH-type finger 6
mm39_v1_chr19_+_28967875_28967902	0.813691	AUAAAGU	ENSMUST00000224599.2|Cdc37l1|ENSMUSG00000024780.8|cell division cycle 37-like 1	ENSMUST00000050148.5|Cdc37l1|ENSMUSG00000024780.8|cell division cycle 37-like 1
mm39_v1_chr16_-_97723753_97723833	0.80737	AUAAAGU	ENSMUST00000170757.3|C2cd2|ENSMUSG00000045975.9|C2 calcium-dependent domain containing 2
mm39_v1_chr13_+_46571910_46571986	0.794226	AUAAAGU	ENSMUST00000037923.5|Rbm24|ENSMUSG00000038132.7|RNA binding motif protein 24
mm39_v1_chr5_-_135280063_135280134	0.780315	AUAAAGU	ENSMUST00000062572.3|Fzd9|ENSMUSG00000049551.3|frizzled class receptor 9
mm39_v1_chr8_+_129085719_129085787	0.77837	AUAAAGU	ENSMUST00000026917.10|Nrp1|ENSMUSG00000025810.10|neuropilin 1
mm39_v1_chr19_-_34724689_34724713	0.745644	AUAAAGU	ENSMUST00000009522.4|Slc16a12|ENSMUSG00000009378.5|solute carrier family 16 (monocarboxylic acid transporters), member 12
mm39_v1_chr4_-_8239034_8239047	0.722915	AUAAAGU	ENSMUST00000066674.8|Car8|ENSMUSG00000041261.10|carbonic anhydrase 8
mm39_v1_chr16_-_4950285_4950347	0.68966	AUAAAGU	ENSMUST00000035672.5|Ppl|ENSMUSG00000039457.5|periplakin
mm39_v1_chr16_+_72460029_72460077	0.678908	AUAAAGU	ENSMUST00000023600.8|Robo1|ENSMUSG00000022883.12|roundabout guidance receptor 1
mm39_v1_chr10_-_120735000_120735011	0.671424	AUAAAGU	ENSMUST00000092143.12|Msrb3|ENSMUSG00000051236.14|methionine sulfoxide reductase B3
mm39_v1_chr13_-_47083194_47083276	0.670228	AUAAAGU	ENSMUST00000056978.8|Kif13a|ENSMUSG00000021375.12|kinesin family member 13A
mm39_v1_chr5_+_118114826_118114868	0.645413	AUAAAGU	ENSMUST00000035579.10|Fbxo21|ENSMUSG00000032898.10|F-box protein 21
mm39_v1_chrX_-_47123719_47123736	0.643653	AUAAAGU	ENSMUST00000039026.8|Apln|ENSMUSG00000037010.8|apelin
mm39_v1_chr11_+_104122216_104122279	0.640263	AUAAAGU	ENSMUST00000106992.10|Mapt|ENSMUSG00000018411.18|microtubule-associated protein tau
mm39_v1_chr18_+_36414122_36414204	0.634432	AUAAAGU	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chr12_+_40495951_40496015	0.625542	AUAAAGU	ENSMUST00000037488.8|Dock4|ENSMUSG00000035954.11|dedicator of cytokinesis 4
mm39_v1_chr2_+_78699360_78699443	0.624807	AUAAAGU	ENSMUST00000028398.14|Ube2e3|ENSMUSG00000027011.15|ubiquitin-conjugating enzyme E2E 3
mm39_v1_chrX_+_104807868_104807885	0.612625	AUAAAGU	ENSMUST00000033581.4|Fgf16|ENSMUSG00000031230.4|fibroblast growth factor 16
mm39_v1_chr7_+_49559859_49559894	0.612151	AUAAAGU	ENSMUST00000056442.12|Slc6a5|ENSMUSG00000039728.16|solute carrier family 6 (neurotransmitter transporter, glycine), member 5
mm39_v1_chr18_+_61058684_61058712	0.611107	AUAAAGU	ENSMUST00000102888.10|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha	ENSMUST00000025519.11|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha
mm39_v1_chr1_+_59521583_59521583	0.596613	AUAAAGU	ENSMUST00000114246.4|Fzd7|ENSMUSG00000041075.9|frizzled class receptor 7
mm39_v1_chr16_-_30207348_30207348	0.596093	AUAAAGU	ENSMUST00000061350.13|Atp13a3|ENSMUSG00000022533.15|ATPase type 13A3	ENSMUST00000100013.9|Atp13a3|ENSMUSG00000022533.15|ATPase type 13A3
mm39_v1_chr8_+_83589979_83590055	0.583704	AUAAAGU	ENSMUST00000078525.7|Rnf150|ENSMUSG00000047747.11|ring finger protein 150
mm39_v1_chr18_+_4634878_4634974	0.579437	AUAAAGU	ENSMUST00000037029.7|Jcad|ENSMUSG00000033960.7|junctional cadherin 5 associated
mm39_v1_chr11_-_47270201_47270349	0.572296	AUAAAGU	ENSMUST00000077221.6|Sgcd|ENSMUSG00000020354.16|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm39_v1_chr9_+_121589044_121589127	0.558486	AUAAAGU	ENSMUST00000093772.4|Zfp651|ENSMUSG00000013419.8|zinc finger protein 651
mm39_v1_chr3_+_32583602_32583676	0.556429	AUAAAGU	ENSMUST00000091257.11|Mfn1|ENSMUSG00000027668.14|mitofusin 1
mm39_v1_chr1_-_59276252_59276416	0.553742	AUAAAGU	ENSMUST00000163058.2|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor	ENSMUST00000160945.2|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor	ENSMUST00000027178.13|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor
mm39_v1_chr6_-_145811028_145811085	0.548779	AUAAAGU	ENSMUST00000111703.2|Bhlhe41|ENSMUSG00000030256.12|basic helix-loop-helix family, member e41
mm39_v1_chr3_+_58484057_58484125	0.544609	AUAAAGU	ENSMUST00000107924.3|Selenot|ENSMUSG00000075700.11|selenoprotein T
mm39_v1_chr6_-_72416531_72416548	0.534325	AUAAAGU	ENSMUST00000205335.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000206692.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000059472.10|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha
mm39_v1_chr2_+_69727563_69727591	0.533465	AUAAAGU	ENSMUST00000055758.16|Ubr3|ENSMUSG00000044308.18|ubiquitin protein ligase E3 component n-recognin 3	ENSMUST00000112251.9|Ubr3|ENSMUSG00000044308.18|ubiquitin protein ligase E3 component n-recognin 3
mm39_v1_chr19_-_37184692_37184907	0.520345	AUAAAGU	ENSMUST00000132580.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000079754.11|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000136286.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000126188.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000126781.2|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3
mm39_v1_chr5_+_92719336_92719423	0.51836	AUAAAGU	ENSMUST00000176621.8|Fam47e|ENSMUSG00000057068.16|family with sequence similarity 47, member E	ENSMUST00000175974.2|Fam47e|ENSMUSG00000057068.16|family with sequence similarity 47, member E	ENSMUST00000131166.9|Fam47e|ENSMUSG00000057068.16|family with sequence similarity 47, member E	ENSMUST00000176448.8|Fam47e|ENSMUSG00000057068.16|family with sequence similarity 47, member E	ENSMUST00000082382.8|Fam47e|ENSMUSG00000057068.16|family with sequence similarity 47, member E
mm39_v1_chr6_+_91661034_91661058	0.516944	AUAAAGU	ENSMUST00000032185.9|Slc6a6|ENSMUSG00000030096.9|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm39_v1_chr13_+_119565424_119565498	0.514566	AUAAAGU	ENSMUST00000026520.14|Paip1|ENSMUSG00000025451.16|polyadenylate binding protein-interacting protein 1
mm39_v1_chr3_-_73615732_73615756	0.513082	AUAAAGU	ENSMUST00000029367.6|Bche|ENSMUSG00000027792.12|butyrylcholinesterase
mm39_v1_chr10_-_107321938_107321995	0.510741	AUAAAGU	ENSMUST00000000445.2|Myf5|ENSMUSG00000000435.2|myogenic factor 5
mm39_v1_chr10_+_84753480_84753520	0.509124	AUAAAGU	ENSMUST00000038523.15|Ric8b|ENSMUSG00000035620.16|RIC8 guanine nucleotide exchange factor B	ENSMUST00000214693.2|Ric8b|ENSMUSG00000035620.16|RIC8 guanine nucleotide exchange factor B	ENSMUST00000095385.5|Ric8b|ENSMUSG00000035620.16|RIC8 guanine nucleotide exchange factor B
mm39_v1_chr6_-_38853097_38853167	0.504501	AUAAAGU	ENSMUST00000161779.8|Hipk2|ENSMUSG00000061436.16|homeodomain interacting protein kinase 2
mm39_v1_chr7_+_144415115_144415132	0.499248	AUAAAGU	ENSMUST00000060336.5|Fgf4|ENSMUSG00000050917.6|fibroblast growth factor 4
mm39_v1_chr2_-_181101158_181101232	0.492301	AUAAAGU	ENSMUST00000155535.2|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46	ENSMUST00000029106.13|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46	ENSMUST00000087409.10|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46
mm39_v1_chr2_-_63928339_63928367	0.489686	AUAAAGU	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr5_-_88823989_88824045	0.473096	AUAAAGU	ENSMUST00000078945.12|Grsf1|ENSMUSG00000044221.15|G-rich RNA sequence binding factor 1
mm39_v1_chr11_-_60111391_60111458	0.463211	AUAAAGU	ENSMUST00000020846.8|Srebf1|ENSMUSG00000020538.16|sterol regulatory element binding transcription factor 1
mm39_v1_chr16_-_28748410_28748457	0.453566	AUAAAGU	ENSMUST00000100023.3|Mb21d2|ENSMUSG00000051065.10|Mab-21 domain containing 2
mm39_v1_chr12_+_24701273_24701410	0.445397	AUAAAGU	ENSMUST00000020982.7|Klf11|ENSMUSG00000020653.13|Kruppel-like factor 11
mm39_v1_chr1_+_7159134_7159217	0.445155	AUAAAGU	ENSMUST00000061280.17|Pcmtd1|ENSMUSG00000051285.18|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	ENSMUST00000182114.8|Pcmtd1|ENSMUSG00000051285.18|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm39_v1_chr15_-_31367668_31367727	0.442568	AUAAAGU	ENSMUST00000110410.10|Ankrd33b|ENSMUSG00000022237.18|ankyrin repeat domain 33B	ENSMUST00000076942.5|Ankrd33b|ENSMUSG00000022237.18|ankyrin repeat domain 33B
mm39_v1_chr3_-_69034425_69034446	0.441705	AUAAAGU	ENSMUST00000194558.6|Kpna4|ENSMUSG00000027782.11|karyopherin (importin) alpha 4	ENSMUST00000029353.9|Kpna4|ENSMUSG00000027782.11|karyopherin (importin) alpha 4
mm39_v1_chr2_-_127634387_127634425	0.439392	AUAAAGU	ENSMUST00000135091.2|Mtln|ENSMUSG00000051319.7|mitoregulin
mm39_v1_chr5_+_130477642_130477671	0.437244	AUAAAGU	ENSMUST00000111288.4|Caln1|ENSMUSG00000060371.13|calneuron 1
mm39_v1_chr3_+_135144202_135144241	0.43485	AUAAAGU	ENSMUST00000166033.6|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3
mm39_v1_chr15_-_99603371_99603371	0.434203	AUAAAGU	ENSMUST00000163472.3|Gm17349|ENSMUSG00000091604.3|predicted gene, 17349
mm39_v1_chr4_-_132459762_132459874	0.432524	AUAAAGU	ENSMUST00000045550.5|Xkr8|ENSMUSG00000037752.5|X-linked Kx blood group related 8
mm39_v1_chr6_-_50543514_50543538	0.430074	AUAAAGU	ENSMUST00000161401.2|Cycs|ENSMUSG00000063694.6|cytochrome c, somatic
mm39_v1_chr16_-_85698679_85698716	0.424902	AUAAAGU	ENSMUST00000023611.7|Adamts5|ENSMUSG00000022894.7|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm39_v1_chr2_+_32496990_32497068	0.421087	AUAAAGU	ENSMUST00000095045.9|St6galnac6|ENSMUSG00000026811.19|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	ENSMUST00000095044.10|St6galnac6|ENSMUSG00000026811.19|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	ENSMUST00000126636.8|St6galnac6|ENSMUSG00000026811.19|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
mm39_v1_chr9_-_94420128_94420142	0.416407	AUAAAGU	ENSMUST00000113028.2|Dipk2a|ENSMUSG00000045414.8|divergent protein kinase domain 2A
mm39_v1_chr3_+_106455114_106455205	0.414193	AUAAAGU	ENSMUST00000067630.13|Dram2|ENSMUSG00000027900.16|DNA-damage regulated autophagy modulator 2	ENSMUST00000134396.8|Dram2|ENSMUSG00000027900.16|DNA-damage regulated autophagy modulator 2	ENSMUST00000121034.8|Dram2|ENSMUSG00000027900.16|DNA-damage regulated autophagy modulator 2	ENSMUST00000029507.13|Dram2|ENSMUSG00000027900.16|DNA-damage regulated autophagy modulator 2	ENSMUST00000144746.8|Dram2|ENSMUSG00000027900.16|DNA-damage regulated autophagy modulator 2	ENSMUST00000132923.8|Dram2|ENSMUSG00000027900.16|DNA-damage regulated autophagy modulator 2	ENSMUST00000151465.2|Dram2|ENSMUSG00000027900.16|DNA-damage regulated autophagy modulator 2
mm39_v1_chr2_+_148522943_148523070	0.405372	AUAAAGU	ENSMUST00000028928.8|Gzf1|ENSMUSG00000027439.10|GDNF-inducible zinc finger protein 1
mm39_v1_chr9_+_122180673_122180803	0.403876	AUAAAGU	ENSMUST00000156520.8|Abhd5|ENSMUSG00000032540.17|abhydrolase domain containing 5	ENSMUST00000111497.5|Abhd5|ENSMUSG00000032540.17|abhydrolase domain containing 5
mm39_v1_chr11_-_28534260_28534325	0.399976	AUAAAGU	ENSMUST00000093253.10|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A	ENSMUST00000109502.9|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A	ENSMUST00000042534.15|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A
mm39_v1_chr15_+_25843225_25843275	0.399015	AUAAAGU	ENSMUST00000022881.15|Retreg1|ENSMUSG00000022270.17|reticulophagy regulator 1
mm39_v1_chr2_-_166838018_166838029	0.390414	AUAAAGU	ENSMUST00000049412.12|Stau1|ENSMUSG00000039536.17|staufen double-stranded RNA binding protein 1
mm39_v1_chr10_-_31485180_31485180	0.381189	AUAAAGU	ENSMUST00000081989.8|Rnf217|ENSMUSG00000063760.10|ring finger protein 217
mm39_v1_chr14_+_26616514_26616584	0.378166	AUAAAGU	ENSMUST00000238987.2|Asb14|ENSMUSG00000021898.17|ankyrin repeat and SOCS box-containing 14	ENSMUST00000239004.2|Asb14|ENSMUSG00000021898.17|ankyrin repeat and SOCS box-containing 14	ENSMUST00000165929.4|Asb14|ENSMUSG00000021898.17|ankyrin repeat and SOCS box-containing 14	ENSMUST00000090337.12|Asb14|ENSMUSG00000021898.17|ankyrin repeat and SOCS box-containing 14
mm39_v1_chr2_+_76236870_76236936	0.375987	AUAAAGU	ENSMUST00000077972.11|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6	ENSMUST00000111929.8|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6	ENSMUST00000111930.9|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6
mm39_v1_chr1_+_185187000_185187045	0.375889	AUAAAGU	ENSMUST00000061093.7|Slc30a10|ENSMUSG00000026614.8|solute carrier family 30, member 10
mm39_v1_chr18_-_24153805_24153876	0.372472	AUAAAGU	ENSMUST00000066497.12|Zfp24|ENSMUSG00000051469.15|zinc finger protein 24
mm39_v1_chr10_-_23225781_23225817	0.372304	AUAAAGU	ENSMUST00000092665.12|Eya4|ENSMUSG00000010461.17|EYA transcriptional coactivator and phosphatase 4
mm39_v1_chr5_-_110957933_110957979	0.367027	AUAAAGU	ENSMUST00000031490.11|Ulk1|ENSMUSG00000029512.12|unc-51 like kinase 1
mm39_v1_chr14_-_69969959_69970031	0.364953	AUAAAGU	ENSMUST00000036381.10|Chmp7|ENSMUSG00000034190.10|charged multivesicular body protein 7
mm39_v1_chr6_+_88701394_88701412	0.363185	AUAAAGU	ENSMUST00000113585.9|Mgll|ENSMUSG00000033174.18|monoglyceride lipase
mm39_v1_chrX_+_133587268_133587286	0.359198	AUAAAGU	ENSMUST00000124226.3|Armcx4|ENSMUSG00000049804.10|armadillo repeat containing, X-linked 4
mm39_v1_chr6_-_115971914_115971971	0.358177	AUAAAGU	ENSMUST00000015511.15|Plxnd1|ENSMUSG00000030123.16|plexin D1
mm39_v1_chrX_+_138511360_138511408	0.351479	AUAAAGU	ENSMUST00000113026.2|Rnf128|ENSMUSG00000031438.12|ring finger protein 128
mm39_v1_chr15_+_100125693_100125705	0.350986	AUAAAGU	ENSMUST00000023769.11|Atf1|ENSMUSG00000023027.14|activating transcription factor 1
mm39_v1_chr18_-_77652820_77652858	0.347285	AUAAAGU	ENSMUST00000026494.14|Rnf165|ENSMUSG00000025427.16|ring finger protein 165	ENSMUST00000182024.2|Rnf165|ENSMUSG00000025427.16|ring finger protein 165
mm39_v1_chr1_-_93406515_93406544	0.34569	AUAAAGU	ENSMUST00000170883.8|Hdlbp|ENSMUSG00000034088.16|high density lipoprotein (HDL) binding protein	ENSMUST00000189025.7|Hdlbp|ENSMUSG00000034088.16|high density lipoprotein (HDL) binding protein
mm39_v1_chr1_+_24717968_24718018	0.344793	AUAAAGU	ENSMUST00000095062.10|Lmbrd1|ENSMUSG00000073725.9|LMBR1 domain containing 1
mm39_v1_chr8_+_95113066_95113135	0.342324	AUAAAGU	ENSMUST00000161576.8|Herpud1|ENSMUSG00000031770.17|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	ENSMUST00000034220.8|Herpud1|ENSMUSG00000031770.17|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
mm39_v1_chr12_-_51738666_51738738	0.334777	AUAAAGU	ENSMUST00000013130.15|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3	ENSMUST00000169503.4|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3
mm39_v1_chr1_+_90131702_90131734	0.330889	AUAAAGU	ENSMUST00000065587.5|Ackr3|ENSMUSG00000044337.6|atypical chemokine receptor 3	ENSMUST00000159654.2|Ackr3|ENSMUSG00000044337.6|atypical chemokine receptor 3
mm39_v1_chr2_+_120970888_120970946	0.32759	AUAAAGU	ENSMUST00000028702.10|Adal|ENSMUSG00000027259.16|adenosine deaminase-like	ENSMUST00000110665.8|Adal|ENSMUSG00000027259.16|adenosine deaminase-like
mm39_v1_chr1_+_167516771_167516806	0.324437	AUAAAGU	ENSMUST00000111377.8|Lmx1a|ENSMUSG00000026686.15|LIM homeobox transcription factor 1 alpha
mm39_v1_chr11_-_86574586_86574673	0.324129	AUAAAGU	ENSMUST00000018315.10|Vmp1|ENSMUSG00000018171.10|vacuole membrane protein 1
mm39_v1_chr2_-_155434487_155434730	0.323753	AUAAAGU	ENSMUST00000155347.2|Gss|ENSMUSG00000027610.18|glutathione synthetase	ENSMUST00000130881.8|Gss|ENSMUSG00000027610.18|glutathione synthetase	ENSMUST00000079691.13|Gss|ENSMUSG00000027610.18|glutathione synthetase
mm39_v1_chr2_+_106523532_106523624	0.319172	AUAAAGU	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chrX_-_103244784_103244810	0.315706	AUAAAGU	ENSMUST00000118314.8|Nexmif|ENSMUSG00000046449.16|neurite extension and migration factor
mm39_v1_chrX_-_163763273_163763333	0.308055	AUAAAGU	ENSMUST00000112247.9|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2	ENSMUST00000004715.2|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2
mm39_v1_chr8_-_122379631_122379652	0.307936	AUAAAGU	ENSMUST00000046386.5|Zcchc14|ENSMUSG00000061410.7|zinc finger, CCHC domain containing 14
mm39_v1_chr7_-_136916123_136916174	0.307305	AUAAAGU	ENSMUST00000106118.10|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000168203.2|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000169486.9|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000033378.13|Ebf3|ENSMUSG00000010476.15|early B cell factor 3
mm39_v1_chr11_+_80099843_80099884	0.304142	AUAAAGU	ENSMUST00000077451.14|Rhot1|ENSMUSG00000017686.18|ras homolog family member T1	ENSMUST00000055056.16|Rhot1|ENSMUSG00000017686.18|ras homolog family member T1
mm39_v1_chr11_+_93886906_93886929	0.297182	AUAAAGU	ENSMUST00000041956.14|Spag9|ENSMUSG00000020859.17|sperm associated antigen 9
mm39_v1_chr1_-_119765343_119765403	0.294078	AUAAAGU	ENSMUST00000064091.12|Ptpn4|ENSMUSG00000026384.14|protein tyrosine phosphatase, non-receptor type 4
mm39_v1_chr2_+_121859025_121859137	0.287681	AUAAAGU	ENSMUST00000028668.8|Eif3j1|ENSMUSG00000027236.9|eukaryotic translation initiation factor 3, subunit J1
mm39_v1_chr3_-_75864195_75864266	0.286259	AUAAAGU	ENSMUST00000038563.14|Golim4|ENSMUSG00000034109.16|golgi integral membrane protein 4	ENSMUST00000167078.8|Golim4|ENSMUSG00000034109.16|golgi integral membrane protein 4	ENSMUST00000117242.8|Golim4|ENSMUSG00000034109.16|golgi integral membrane protein 4
mm39_v1_chr2_-_167032068_167032093	0.277237	AUAAAGU	ENSMUST00000059826.10|Kcnb1|ENSMUSG00000050556.10|potassium voltage gated channel, Shab-related subfamily, member 1
mm39_v1_chr1_+_82564627_82564709	0.275748	AUAAAGU	ENSMUST00000113457.9|Col4a3|ENSMUSG00000079465.9|collagen, type IV, alpha 3
mm39_v1_chr19_+_47167259_47167436	0.274428	AUAAAGU	ENSMUST00000111808.11|Neurl1a|ENSMUSG00000006435.17|neuralized E3 ubiquitin protein ligase 1A
mm39_v1_chrX_+_109857866_109857886	0.272653	AUAAAGU	ENSMUST00000078229.5|Pou3f4|ENSMUSG00000056854.5|POU domain, class 3, transcription factor 4
mm39_v1_chr11_-_84416340_84416369	0.272564	AUAAAGU	ENSMUST00000018842.14|Lhx1|ENSMUSG00000018698.16|LIM homeobox protein 1
mm39_v1_chr18_-_39623698_39623771	0.272258	AUAAAGU	ENSMUST00000115567.8|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr1_-_165762469_165762605	0.270341	AUAAAGU	ENSMUST00000069609.12|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111427.9|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111426.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr18_+_3383230_3383271	0.267296	AUAAAGU	ENSMUST00000162301.8|Cul2|ENSMUSG00000024231.16|cullin 2	ENSMUST00000161317.2|Cul2|ENSMUSG00000024231.16|cullin 2
mm39_v1_chr2_-_12306722_12306734	0.263671	AUAAAGU	ENSMUST00000028106.11|Itga8|ENSMUSG00000026768.11|integrin alpha 8
mm39_v1_chr9_-_62029877_62029900	0.262793	AUAAAGU	ENSMUST00000185675.7|Glce|ENSMUSG00000032252.15|glucuronyl C5-epimerase
mm39_v1_chr2_+_107120934_107121005	0.261201	AUAAAGU	ENSMUST00000037012.3|Kcna4|ENSMUSG00000042604.6|potassium voltage-gated channel, shaker-related subfamily, member 4
mm39_v1_chr2_-_112198366_112198381	0.25635	AUAAAGU	ENSMUST00000028551.4|Emc4|ENSMUSG00000027131.4|ER membrane protein complex subunit 4
mm39_v1_chr12_-_12991828_12991915	0.253735	AUAAAGU	ENSMUST00000043396.15|Mycn|ENSMUSG00000037169.16|v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived
mm39_v1_chr9_+_100525501_100525594	0.249849	AUAAAGU	ENSMUST00000146312.8|Stag1|ENSMUSG00000037286.16|stromal antigen 1	ENSMUST00000129269.8|Stag1|ENSMUSG00000037286.16|stromal antigen 1
mm39_v1_chr7_-_34012956_34012993	0.247207	AUAAAGU	ENSMUST00000108074.8|Garre1|ENSMUSG00000066571.14|granule associated Rac and RHOG effector 1
mm39_v1_chr5_-_76452365_76452398	0.246168	AUAAAGU	ENSMUST00000075159.5|Clock|ENSMUSG00000029238.12|circadian locomotor output cycles kaput
mm39_v1_chr2_-_131987008_131987037	0.240829	AUAAAGU	ENSMUST00000028815.15|Slc23a2|ENSMUSG00000027340.16|solute carrier family 23 (nucleobase transporters), member 2
mm39_v1_chr17_+_57556449_57556548	0.240693	AUAAAGU	ENSMUST00000224947.2|Trip10|ENSMUSG00000019487.12|thyroid hormone receptor interactor 10	ENSMUST00000019631.11|Trip10|ENSMUSG00000019487.12|thyroid hormone receptor interactor 10	ENSMUST00000224885.2|Trip10|ENSMUSG00000019487.12|thyroid hormone receptor interactor 10	ENSMUST00000224152.2|Trip10|ENSMUSG00000019487.12|thyroid hormone receptor interactor 10
mm39_v1_chr16_-_62607105_62607161	0.24037	AUAAAGU	ENSMUST00000152553.2|Nsun3|ENSMUSG00000050312.13|NOL1/NOP2/Sun domain family member 3	ENSMUST00000063089.12|Nsun3|ENSMUSG00000050312.13|NOL1/NOP2/Sun domain family member 3
mm39_v1_chr3_-_105708632_105708694	0.239671	AUAAAGU	ENSMUST00000090678.11|Rap1a|ENSMUSG00000068798.11|RAS-related protein 1a
mm39_v1_chr1_-_170695328_170695354	0.235116	AUAAAGU	ENSMUST00000027974.7|Atf6|ENSMUSG00000026663.7|activating transcription factor 6
mm39_v1_chr4_+_139302009_139302036	0.232004	AUAAAGU	ENSMUST00000174078.2|Iffo2|ENSMUSG00000041025.16|intermediate filament family orphan 2
mm39_v1_chr5_-_44383943_44383975	0.229292	AUAAAGU	ENSMUST00000055128.12|Tapt1|ENSMUSG00000046985.12|transmembrane anterior posterior transformation 1
mm39_v1_chr5_+_138159333_138159378	0.224979	AUAAAGU	ENSMUST00000019638.15|Cops6|ENSMUSG00000019494.15|COP9 signalosome subunit 6	ENSMUST00000110951.8|Cops6|ENSMUSG00000019494.15|COP9 signalosome subunit 6
mm39_v1_chr12_-_35584968_35585059	0.223921	AUAAAGU	ENSMUST00000116436.9|Ahr|ENSMUSG00000019256.18|aryl-hydrocarbon receptor
mm39_v1_chr3_+_16237371_16237447	0.223783	AUAAAGU	ENSMUST00000108345.9|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000191774.6|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000108346.5|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3
mm39_v1_chr3_+_135531409_135531425	0.22365	AUAAAGU	ENSMUST00000180196.8|Slc39a8|ENSMUSG00000053897.16|solute carrier family 39 (metal ion transporter), member 8
mm39_v1_chr10_-_123032821_123032868	0.222558	AUAAAGU	ENSMUST00000219619.2|Usp15|ENSMUSG00000020124.11|ubiquitin specific peptidase 15	ENSMUST00000020334.9|Usp15|ENSMUSG00000020124.11|ubiquitin specific peptidase 15
mm39_v1_chr13_+_93444514_93444542	0.222151	AUAAAGU	ENSMUST00000079086.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1
mm39_v1_chr12_-_108145498_108145594	0.221431	AUAAAGU	ENSMUST00000071095.14|Setd3|ENSMUSG00000056770.16|SET domain containing 3
mm39_v1_chr9_+_74944896_74944983	0.219405	AUAAAGU	ENSMUST00000168166.8|Arpp19|ENSMUSG00000007656.14|cAMP-regulated phosphoprotein 19	ENSMUST00000169492.8|Arpp19|ENSMUSG00000007656.14|cAMP-regulated phosphoprotein 19	ENSMUST00000170308.8|Arpp19|ENSMUSG00000007656.14|cAMP-regulated phosphoprotein 19
mm39_v1_chr8_-_32408864_32408913	0.219322	AUAAAGU	ENSMUST00000073884.7|Nrg1|ENSMUSG00000062991.10|neuregulin 1	ENSMUST00000238812.2|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chr1_+_4878046_4878137	0.216109	AUAAAGU	ENSMUST00000027036.11|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000150971.8|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000119612.9|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000137887.8|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000115529.8|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1
mm39_v1_chr17_+_29020064_29020108	0.216002	AUAAAGU	ENSMUST00000004985.11|Brpf3|ENSMUSG00000063952.17|bromodomain and PHD finger containing, 3
mm39_v1_chr12_-_73160181_73160230	0.215256	AUAAAGU	ENSMUST00000043208.8|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4	ENSMUST00000175693.3|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4
mm39_v1_chr1_+_131838294_131838310	0.211417	AUAAAGU	ENSMUST00000062264.8|Nucks1|ENSMUSG00000026434.13|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm39_v1_chr2_-_157408239_157408281	0.210413	AUAAAGU	ENSMUST00000109528.9|Blcap|ENSMUSG00000067787.11|bladder cancer associated protein	ENSMUST00000088494.3|Blcap|ENSMUSG00000067787.11|bladder cancer associated protein
mm39_v1_chr2_-_30364219_30364239	0.210207	AUAAAGU	ENSMUST00000065134.4|Ier5l|ENSMUSG00000089762.4|immediate early response 5-like
mm39_v1_chr9_+_69896748_69896821	0.208255	AUAAAGU	ENSMUST00000034754.12|Bnip2|ENSMUSG00000011958.18|BCL2/adenovirus E1B interacting protein 2	ENSMUST00000085393.13|Bnip2|ENSMUSG00000011958.18|BCL2/adenovirus E1B interacting protein 2	ENSMUST00000117450.8|Bnip2|ENSMUSG00000011958.18|BCL2/adenovirus E1B interacting protein 2
mm39_v1_chr1_+_87683592_87683839	0.207747	AUAAAGU	ENSMUST00000144047.8|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000027512.13|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000113186.8|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000113190.3|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)
mm39_v1_chr9_+_114560235_114560308	0.205957	AUAAAGU	ENSMUST00000035007.10|Cmtm6|ENSMUSG00000032434.10|CKLF-like MARVEL transmembrane domain containing 6
mm39_v1_chr1_-_75195889_75195938	0.205452	AUAAAGU	ENSMUST00000186213.7|Tuba4a|ENSMUSG00000026202.14|tubulin, alpha 4A
mm39_v1_chr6_-_148345834_148345887	0.205377	AUAAAGU	ENSMUST00000060095.15|Tmtc1|ENSMUSG00000030306.15|transmembrane and tetratricopeptide repeat containing 1	ENSMUST00000100772.10|Tmtc1|ENSMUSG00000030306.15|transmembrane and tetratricopeptide repeat containing 1
mm39_v1_chr7_+_120276801_120276868	0.203498	AUAAAGU	ENSMUST00000208454.2|Mosmo|ENSMUSG00000046096.8|modulator of smoothened	ENSMUST00000060175.8|Mosmo|ENSMUSG00000046096.8|modulator of smoothened
mm39_v1_chr19_-_32365862_32365912	0.203321	AUAAAGU	ENSMUST00000099514.10|Sgms1|ENSMUSG00000040451.19|sphingomyelin synthase 1
mm39_v1_chr12_-_54250646_54250673	0.203169	AUAAAGU	ENSMUST00000039516.4|Egln3|ENSMUSG00000035105.6|egl-9 family hypoxia-inducible factor 3
mm39_v1_chr14_-_31552608_31552689	0.202456	AUAAAGU	ENSMUST00000014640.9|Ankrd28|ENSMUSG00000014496.9|ankyrin repeat domain 28
mm39_v1_chrX_+_36137948_36137999	0.201648	AUAAAGU	ENSMUST00000016452.11|Ube2a|ENSMUSG00000016308.13|ubiquitin-conjugating enzyme E2A	ENSMUST00000202991.4|Ube2a|ENSMUSG00000016308.13|ubiquitin-conjugating enzyme E2A	ENSMUST00000201068.4|Ube2a|ENSMUSG00000016308.13|ubiquitin-conjugating enzyme E2A	ENSMUST00000200835.4|Ube2a|ENSMUSG00000016308.13|ubiquitin-conjugating enzyme E2A
mm39_v1_chr6_-_52211882_52211940	0.200541	AUAAAGU	ENSMUST00000125581.2|Hoxa10|ENSMUSG00000000938.12|homeobox A10
mm39_v1_chr7_+_109617456_109617481	0.200482	AUAAAGU	ENSMUST00000084731.5|Ipo7|ENSMUSG00000066232.5|importin 7
mm39_v1_chr3_-_10505113_10505185	0.199782	AUAAAGU	ENSMUST00000029047.12|Snx16|ENSMUSG00000027534.17|sorting nexin 16	ENSMUST00000195822.2|Snx16|ENSMUSG00000027534.17|sorting nexin 16	ENSMUST00000099223.11|Snx16|ENSMUSG00000027534.17|sorting nexin 16
mm39_v1_chr2_+_74535242_74535258	0.199638	AUAAAGU	ENSMUST00000019749.4|Hoxd8|ENSMUSG00000027102.5|homeobox D8
mm39_v1_chr15_+_78912642_78912656	0.19802	AUAAAGU	ENSMUST00000180086.3|H1f0|ENSMUSG00000096210.3|H1.0 linker histone
mm39_v1_chr6_-_84570890_84570903	0.196175	AUAAAGU	ENSMUST00000168003.9|Cyp26b1|ENSMUSG00000063415.13|cytochrome P450, family 26, subfamily b, polypeptide 1
mm39_v1_chr17_+_30224003_30224074	0.19541	AUAAAGU	ENSMUST00000057897.10|Zfand3|ENSMUSG00000044477.13|zinc finger, AN1-type domain 3
mm39_v1_chr2_+_18681812_18681842	0.193943	AUAAAGU	ENSMUST00000028071.13|Bmi1|ENSMUSG00000026739.14|Bmi1 polycomb ring finger oncogene
mm39_v1_chr2_+_152068729_152068828	0.190989	AUAAAGU	ENSMUST00000099224.10|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide	ENSMUST00000124791.8|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide	ENSMUST00000133119.2|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide
mm39_v1_chr1_+_160022785_160022873	0.190921	AUAAAGU	ENSMUST00000135680.8|Mrps14|ENSMUSG00000058267.14|mitochondrial ribosomal protein S14	ENSMUST00000097193.3|Mrps14|ENSMUSG00000058267.14|mitochondrial ribosomal protein S14
mm39_v1_chr4_-_87148672_87148714	0.183789	AUAAAGU	ENSMUST00000107157.9|Slc24a2|ENSMUSG00000037996.18|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm39_v1_chrX_+_138585728_138585833	0.180351	AUAAAGU	ENSMUST00000096313.4|Tbc1d8b|ENSMUSG00000042473.9|TBC1 domain family, member 8B
mm39_v1_chr4_-_56947411_56947448	0.179952	AUAAAGU	ENSMUST00000107609.4|Tmem245|ENSMUSG00000055296.15|transmembrane protein 245	ENSMUST00000068792.13|Tmem245|ENSMUSG00000055296.15|transmembrane protein 245
mm39_v1_chr5_+_43390513_43390580	0.178914	AUAAAGU	ENSMUST00000166713.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000169035.8|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000114065.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2
mm39_v1_chr1_+_19279138_19279176	0.177991	AUAAAGU	ENSMUST00000027059.11|Tfap2b|ENSMUSG00000025927.14|transcription factor AP-2 beta
mm39_v1_chr7_-_99629637_99629683	0.176191	AUAAAGU	ENSMUST00000080817.6|Rnf169|ENSMUSG00000058761.6|ring finger protein 169
mm39_v1_chr2_-_104647041_104647138	0.176021	AUAAAGU	ENSMUST00000117237.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1	ENSMUST00000231375.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1
mm39_v1_chr6_-_90787100_90787142	0.172358	AUAAAGU	ENSMUST00000101151.10|Iqsec1|ENSMUSG00000034312.16|IQ motif and Sec7 domain 1
mm39_v1_chr19_+_32734884_32734900	0.172343	AUAAAGU	ENSMUST00000013807.8|Pten|ENSMUSG00000013663.8|phosphatase and tensin homolog
mm39_v1_chr1_-_92107971_92108063	0.172215	AUAAAGU	ENSMUST00000186002.3|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4	ENSMUST00000097644.9|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4
mm39_v1_chr3_-_57755500_57755519	0.16841	AUAAAGU	ENSMUST00000066882.10|Pfn2|ENSMUSG00000027805.17|profilin 2
mm39_v1_chr6_+_146626455_146626502	0.166945	AUAAAGU	ENSMUST00000001675.14|Stk38l|ENSMUSG00000001630.14|serine/threonine kinase 38 like
mm39_v1_chr12_-_40087393_40087428	0.166626	AUAAAGU	ENSMUST00000146905.2|Arl4a|ENSMUSG00000047446.19|ADP-ribosylation factor-like 4A
mm39_v1_chr2_-_126718129_126718191	0.166391	AUAAAGU	ENSMUST00000103224.10|Trpm7|ENSMUSG00000027365.15|transient receptor potential cation channel, subfamily M, member 7
mm39_v1_chr15_-_38300937_38300959	0.16634	AUAAAGU	ENSMUST00000227920.2|Klf10|ENSMUSG00000037465.11|Kruppel-like factor 10	ENSMUST00000074043.7|Klf10|ENSMUSG00000037465.11|Kruppel-like factor 10	ENSMUST00000228416.2|Klf10|ENSMUSG00000037465.11|Kruppel-like factor 10
mm39_v1_chr5_-_44956981_44957014	0.165938	AUAAAGU	ENSMUST00000070748.10|Ldb2|ENSMUSG00000039706.12|LIM domain binding 2
mm39_v1_chr2_+_76505619_76505630	0.164686	AUAAAGU	ENSMUST00000111920.2|Plekha3|ENSMUSG00000002733.9|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm39_v1_chr14_-_21102487_21102592	0.162308	AUAAAGU	ENSMUST00000154460.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit	ENSMUST00000130291.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit
mm39_v1_chr12_-_110855521_110855581	0.161817	AUAAAGU	ENSMUST00000220607.2|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein	ENSMUST00000221182.2|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein	ENSMUST00000222457.2|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein	ENSMUST00000221102.2|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein	ENSMUST00000043716.9|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein
mm39_v1_chr7_+_100355798_100355909	0.161525	AUAAAGU	ENSMUST00000107042.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000207564.2|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000049053.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A
mm39_v1_chr5_-_140375010_140375019	0.160903	AUAAAGU	ENSMUST00000031539.12|Snx8|ENSMUSG00000029560.13|sorting nexin 8
mm39_v1_chr11_+_21189277_21189308	0.160803	AUAAAGU	ENSMUST00000109578.8|Vps54|ENSMUSG00000020128.16|VPS54 GARP complex subunit	ENSMUST00000006221.14|Vps54|ENSMUSG00000020128.16|VPS54 GARP complex subunit
mm39_v1_chr2_+_84670956_84670985	0.159983	AUAAAGU	ENSMUST00000111625.2|Slc43a1|ENSMUSG00000027075.17|solute carrier family 43, member 1
mm39_v1_chr1_+_194302123_194302141	0.158342	AUAAAGU	ENSMUST00000027952.12|Plxna2|ENSMUSG00000026640.13|plexin A2
mm39_v1_chr12_+_108758871_108758914	0.158084	AUAAAGU	ENSMUST00000021692.9|Yy1|ENSMUSG00000021264.13|YY1 transcription factor
mm39_v1_chr18_+_59308722_59308722	0.154411	AUAAAGU	ENSMUST00000080721.6|Chsy3|ENSMUSG00000058152.9|chondroitin sulfate synthase 3
mm39_v1_chr8_+_85558151_85558151	0.15382	AUAAAGU	ENSMUST00000036734.6|Gadd45gip1|ENSMUSG00000033751.6|growth arrest and DNA-damage-inducible, gamma interacting protein 1
mm39_v1_chr10_+_11157047_11157103	0.150069	AUAAAGU	ENSMUST00000129456.8|Fbxo30|ENSMUSG00000047648.14|F-box protein 30
mm39_v1_chr6_-_52135261_52135332	0.14986	AUAAAGU	ENSMUST00000000964.6|Hoxa1|ENSMUSG00000029844.10|homeobox A1	ENSMUST00000120363.2|Hoxa1|ENSMUSG00000029844.10|homeobox A1
mm39_v1_chr10_+_69048464_69048503	0.148631	AUAAAGU	ENSMUST00000020101.12|Rhobtb1|ENSMUSG00000019944.15|Rho-related BTB domain containing 1
mm39_v1_chr2_-_53081199_53081296	0.148022	AUAAAGU	ENSMUST00000239398.2|Prpf40a|ENSMUSG00000061136.17|pre-mRNA processing factor 40A	ENSMUST00000076313.14|Prpf40a|ENSMUSG00000061136.17|pre-mRNA processing factor 40A	ENSMUST00000210789.3|Prpf40a|ENSMUSG00000061136.17|pre-mRNA processing factor 40A
mm39_v1_chr15_+_40518414_40518450	0.147656	AUAAAGU	ENSMUST00000053467.6|Zfpm2|ENSMUSG00000022306.10|zinc finger protein, multitype 2
mm39_v1_chr7_-_81479179_81479262	0.147112	AUAAAGU	ENSMUST00000026093.9|Btbd1|ENSMUSG00000025103.9|BTB (POZ) domain containing 1
mm39_v1_chr6_-_86503178_86503303	0.147055	AUAAAGU	ENSMUST00000053015.7|Pcbp1|ENSMUSG00000051695.7|poly(rC) binding protein 1
mm39_v1_chr2_-_115896279_115896334	0.146894	AUAAAGU	ENSMUST00000110907.8|Meis2|ENSMUSG00000027210.21|Meis homeobox 2	ENSMUST00000110908.9|Meis2|ENSMUSG00000027210.21|Meis homeobox 2
mm39_v1_chr3_+_95801263_95801289	0.146476	AUAAAGU	ENSMUST00000015894.12|Aph1a|ENSMUSG00000015750.16|aph1 homolog A, gamma secretase subunit
mm39_v1_chr3_-_104869237_104869237	0.146186	AUAAAGU	ENSMUST00000029429.6|Wnt2b|ENSMUSG00000027840.6|wingless-type MMTV integration site family, member 2B
mm39_v1_chr3_-_104127676_104127695	0.145561	AUAAAGU	ENSMUST00000064371.14|Magi3|ENSMUSG00000052539.16|membrane associated guanylate kinase, WW and PDZ domain containing 3
mm39_v1_chr4_+_54947976_54948054	0.138873	AUAAAGU	ENSMUST00000098070.10|Zfp462|ENSMUSG00000060206.12|zinc finger protein 462
mm39_v1_chr3_-_81981946_81982023	0.136995	AUAAAGU	ENSMUST00000029635.14|Gucy1b1|ENSMUSG00000028005.14|guanylate cyclase 1, soluble, beta 1	ENSMUST00000193597.2|Gucy1b1|ENSMUSG00000028005.14|guanylate cyclase 1, soluble, beta 1
mm39_v1_chr9_+_25163735_25163812	0.13646	AUAAAGU	ENSMUST00000115272.9|Septin7|ENSMUSG00000001833.18|septin 7	ENSMUST00000165594.4|Septin7|ENSMUSG00000001833.18|septin 7
mm39_v1_chr15_-_79287747_79287778	0.136171	AUAAAGU	ENSMUST00000074991.10|Tmem184b|ENSMUSG00000009035.16|transmembrane protein 184b
mm39_v1_chr4_-_101122433_101122479	0.131024	AUAAAGU	ENSMUST00000149297.2|Jak1|ENSMUSG00000028530.15|Janus kinase 1	ENSMUST00000102781.10|Jak1|ENSMUSG00000028530.15|Janus kinase 1
mm39_v1_chr5_+_139238069_139238088	0.129698	AUAAAGU	ENSMUST00000026976.12|Get4|ENSMUSG00000025858.13|golgi to ER traffic protein 4
mm39_v1_chr16_+_37909363_37909426	0.128096	AUAAAGU	ENSMUST00000023507.13|Gsk3b|ENSMUSG00000022812.15|glycogen synthase kinase 3 beta
mm39_v1_chr5_-_24235646_24235705	0.124853	AUAAAGU	ENSMUST00000197617.5|Fam126a|ENSMUSG00000028995.15|family with sequence similarity 126, member A	ENSMUST00000030849.13|Fam126a|ENSMUSG00000028995.15|family with sequence similarity 126, member A
mm39_v1_chr5_-_90514360_90514469	0.123659	AUAAAGU	ENSMUST00000168058.7|Ankrd17|ENSMUSG00000055204.16|ankyrin repeat domain 17	ENSMUST00000014421.15|Ankrd17|ENSMUSG00000055204.16|ankyrin repeat domain 17
mm39_v1_chr5_+_29774205_29774265	0.1212	AUAAAGU	ENSMUST00000049453.9|Ube3c|ENSMUSG00000039000.9|ubiquitin protein ligase E3C
mm39_v1_chr12_+_38830081_38830116	0.121178	AUAAAGU	ENSMUST00000095767.11|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr3_+_58322119_58322161	0.120177	AUAAAGU	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr14_-_48902555_48902572	0.116594	AUAAAGU	ENSMUST00000118578.9|Otx2|ENSMUSG00000021848.17|orthodenticle homeobox 2
mm39_v1_chr8_+_106786190_106786265	0.112827	AUAAAGU	ENSMUST00000109308.3|Nfatc3|ENSMUSG00000031902.11|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
mm39_v1_chr10_-_52258170_52258237	0.112554	AUAAAGU	ENSMUST00000020008.10|Gopc|ENSMUSG00000019861.16|golgi associated PDZ and coiled-coil motif containing	ENSMUST00000105475.9|Gopc|ENSMUSG00000019861.16|golgi associated PDZ and coiled-coil motif containing
mm39_v1_chr10_-_40948275_40948286	0.112406	AUAAAGU	ENSMUST00000061796.8|Gpr6|ENSMUSG00000046922.8|G protein-coupled receptor 6
mm39_v1_chr3_-_102111892_102112009	0.111558	AUAAAGU	ENSMUST00000029453.13|Vangl1|ENSMUSG00000027860.16|VANGL planar cell polarity 1
mm39_v1_chrX_+_12937714_12937797	0.108975	AUAAAGU	ENSMUST00000169594.9|Usp9x|ENSMUSG00000031010.18|ubiquitin specific peptidase 9, X chromosome	ENSMUST00000089302.11|Usp9x|ENSMUSG00000031010.18|ubiquitin specific peptidase 9, X chromosome
mm39_v1_chr11_-_120328458_120328558	0.107508	AUAAAGU	ENSMUST00000044271.15|Nploc4|ENSMUSG00000039703.16|NPL4 homolog, ubiquitin recognition factor	ENSMUST00000103017.4|Nploc4|ENSMUSG00000039703.16|NPL4 homolog, ubiquitin recognition factor
mm39_v1_chr17_-_43978056_43978105	0.107045	AUAAAGU	ENSMUST00000024705.6|Slc25a27|ENSMUSG00000023912.11|solute carrier family 25, member 27
mm39_v1_chr2_+_103858168_103858213	0.105292	AUAAAGU	ENSMUST00000111135.8|Fbxo3|ENSMUSG00000027180.13|F-box protein 3	ENSMUST00000111136.8|Fbxo3|ENSMUSG00000027180.13|F-box protein 3	ENSMUST00000102565.4|Fbxo3|ENSMUSG00000027180.13|F-box protein 3
mm39_v1_chr10_-_53951825_53951892	0.105025	AUAAAGU	ENSMUST00000003843.16|Man1a|ENSMUSG00000003746.17|mannosidase 1, alpha
mm39_v1_chr8_+_108020092_108020118	0.104049	AUAAAGU	ENSMUST00000169453.8|Nfat5|ENSMUSG00000003847.17|nuclear factor of activated T cells 5
mm39_v1_chr2_-_75534985_75535023	0.103969	AUAAAGU	ENSMUST00000102672.5|Nfe2l2|ENSMUSG00000015839.7|nuclear factor, erythroid derived 2, like 2
mm39_v1_chr2_-_26823793_26823940	0.102517	AUAAAGU	ENSMUST00000154651.2|Surf4|ENSMUSG00000014867.10|surfeit gene 4	ENSMUST00000015011.10|Surf4|ENSMUSG00000014867.10|surfeit gene 4
mm39_v1_chr16_+_32151056_32151086	0.10228	AUAAAGU	ENSMUST00000115151.5|Ubxn7|ENSMUSG00000053774.10|UBX domain protein 7	ENSMUST00000232137.2|Ubxn7|ENSMUSG00000053774.10|UBX domain protein 7
mm39_v1_chr11_-_97657327_97657400	0.102279	AUAAAGU	ENSMUST00000107579.2|Cwc25|ENSMUSG00000018541.11|CWC25 spliceosome-associated protein	ENSMUST00000018685.9|Cwc25|ENSMUSG00000018541.11|CWC25 spliceosome-associated protein
mm39_v1_chrX_-_161426624_161426661	0.101951	AUAAAGU	ENSMUST00000112334.8|Reps2|ENSMUSG00000040855.16|RALBP1 associated Eps domain containing protein 2
mm39_v1_chr2_-_80411578_80411610	0.0981828	AUAAAGU	ENSMUST00000028386.12|Nckap1|ENSMUSG00000027002.14|NCK-associated protein 1
mm39_v1_chr3_-_138195133_138195276	0.0973794	AUAAAGU	ENSMUST00000197531.2|Metap1|ENSMUSG00000005813.13|methionyl aminopeptidase 1	ENSMUST00000029804.13|Metap1|ENSMUSG00000005813.13|methionyl aminopeptidase 1
mm39_v1_chr10_-_71121083_71121094	0.0972516	AUAAAGU	ENSMUST00000020085.7|Ube2d1|ENSMUSG00000019927.7|ubiquitin-conjugating enzyme E2D 1
mm39_v1_chr14_+_29690265_29690320	0.0951452	AUAAAGU	ENSMUST00000112268.4|Selenok|ENSMUSG00000042682.11|selenoprotein K
mm39_v1_chr8_-_26275182_26275315	0.0948373	AUAAAGU	ENSMUST00000038498.10|Bag4|ENSMUSG00000037316.10|BCL2-associated athanogene 4
mm39_v1_chr8_+_88845375_88845405	0.0932176	AUAAAGU	ENSMUST00000095214.10|Cnep1r1|ENSMUSG00000036810.17|CTD nuclear envelope phosphatase 1 regulatory subunit 1
mm39_v1_chr9_+_107464841_107464855	0.0905213	AUAAAGU	ENSMUST00000010192.11|Ifrd2|ENSMUSG00000010048.11|interferon-related developmental regulator 2
mm39_v1_chr9_-_100428113_100428192	0.0895704	AUAAAGU	ENSMUST00000186591.7|Nck1|ENSMUSG00000032475.16|non-catalytic region of tyrosine kinase adaptor protein 1	ENSMUST00000116522.8|Nck1|ENSMUSG00000032475.16|non-catalytic region of tyrosine kinase adaptor protein 1
mm39_v1_chr1_-_25267894_25267916	0.0893828	AUAAAGU	ENSMUST00000126626.8|Adgrb3|ENSMUSG00000033569.18|adhesion G protein-coupled receptor B3
mm39_v1_chr1_-_168259465_168259474	0.0891514	AUAAAGU	ENSMUST00000176540.8|Pbx1|ENSMUSG00000052534.16|pre B cell leukemia homeobox 1
mm39_v1_chr11_+_96242422_96242461	0.0891192	AUAAAGU	ENSMUST00000100523.7|Hoxb2|ENSMUSG00000075588.7|homeobox B2
mm39_v1_chr10_-_70995485_70995537	0.0891065	AUAAAGU	ENSMUST00000014473.6|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1	ENSMUST00000143791.8|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1
mm39_v1_chr7_-_105282751_105282807	0.0860104	AUAAAGU	ENSMUST00000057525.14|Trim3|ENSMUSG00000036989.17|tripartite motif-containing 3
mm39_v1_chr7_+_144450260_144450301	0.0846805	AUAAAGU	ENSMUST00000033389.7|Fgf15|ENSMUSG00000031073.7|fibroblast growth factor 15	ENSMUST00000207229.2|Fgf15|ENSMUSG00000031073.7|fibroblast growth factor 15
mm39_v1_chr11_+_60428788_60428810	0.083225	AUAAAGU	ENSMUST00000044250.4|Alkbh5|ENSMUSG00000042650.4|alkB homolog 5, RNA demethylase
mm39_v1_chr2_+_69619967_69619988	0.082473	AUAAAGU	ENSMUST00000151298.8|Phospho2|ENSMUSG00000027088.11|phosphatase, orphan 2	ENSMUST00000028494.9|Phospho2|ENSMUSG00000027088.11|phosphatase, orphan 2
mm39_v1_chr12_-_101879375_101879526	0.0794563	AUAAAGU	ENSMUST00000177536.8|Trip11|ENSMUSG00000021188.15|thyroid hormone receptor interactor 11	ENSMUST00000176728.2|Trip11|ENSMUSG00000021188.15|thyroid hormone receptor interactor 11	ENSMUST00000021605.14|Trip11|ENSMUSG00000021188.15|thyroid hormone receptor interactor 11
mm39_v1_chr14_+_21549798_21549853	0.0765859	AUAAAGU	ENSMUST00000182855.8|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B	ENSMUST00000182405.9|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B	ENSMUST00000069648.14|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B
mm39_v1_chr16_+_91855158_91855216	0.0764353	AUAAAGU	ENSMUST00000047429.9|Mrps6|ENSMUSG00000039680.11|mitochondrial ribosomal protein S6	ENSMUST00000232677.2|Gm49711|ENSMUSG00000116930.2|predicted gene, 49711	ENSMUST00000113975.3|Slc5a3|ENSMUSG00000089774.3|solute carrier family 5 (inositol transporters), member 3
mm39_v1_chr3_-_154036180_154036296	0.0762782	AUAAAGU	ENSMUST00000177846.8|Lhx8|ENSMUSG00000096225.8|LIM homeobox protein 8
mm39_v1_chr2_-_23462052_23462124	0.0751684	AUAAAGU	ENSMUST00000132484.7|Spopl|ENSMUSG00000026771.15|speckle-type BTB/POZ protein-like
mm39_v1_chr13_-_74956030_74956108	0.0737202	AUAAAGU	ENSMUST00000065629.6|Cast|ENSMUSG00000021585.11|calpastatin
mm39_v1_chrX_-_12628309_12628318	0.0730869	AUAAAGU	ENSMUST00000096495.11|Med14|ENSMUSG00000064127.14|mediator complex subunit 14	ENSMUST00000076016.6|Med14|ENSMUSG00000064127.14|mediator complex subunit 14
mm39_v1_chrX_+_72386220_72386237	0.0723541	AUAAAGU	ENSMUST00000114499.8|Zfp275|ENSMUSG00000031365.14|zinc finger protein 275	ENSMUST00000033731.4|Zfp275|ENSMUSG00000031365.14|zinc finger protein 275
mm39_v1_chr13_-_34529157_34529257	0.0703262	AUAAAGU	ENSMUST00000040336.12|Slc22a23|ENSMUSG00000038267.16|solute carrier family 22, member 23
mm39_v1_chr9_+_120762466_120762638	0.0690792	AUAAAGU	ENSMUST00000007130.15|Ctnnb1|ENSMUSG00000006932.18|catenin (cadherin associated protein), beta 1	ENSMUST00000178812.9|Ctnnb1|ENSMUSG00000006932.18|catenin (cadherin associated protein), beta 1
mm39_v1_chr11_+_35660288_35660311	0.0677943	AUAAAGU	ENSMUST00000018990.8|Pank3|ENSMUSG00000018846.9|pantothenate kinase 3
mm39_v1_chr1_-_181039509_181039580	0.0672019	AUAAAGU	ENSMUST00000162819.9|Wdr26|ENSMUSG00000038733.15|WD repeat domain 26	ENSMUST00000237749.2|Wdr26|ENSMUSG00000038733.15|WD repeat domain 26
mm39_v1_chr5_+_69714279_69714437	0.0666877	AUAAAGU	ENSMUST00000087228.11|Guf1|ENSMUSG00000029208.17|GUF1 homolog, GTPase	ENSMUST00000031113.13|Guf1|ENSMUSG00000029208.17|GUF1 homolog, GTPase	ENSMUST00000173205.3|Guf1|ENSMUSG00000029208.17|GUF1 homolog, GTPase
mm39_v1_chr11_+_117545618_117545655	0.066039	AUAAAGU	ENSMUST00000106344.8|Tnrc6c|ENSMUSG00000025571.14|trinucleotide repeat containing 6C
mm39_v1_chr1_+_66507523_66507606	0.0659304	AUAAAGU	ENSMUST00000061620.17|Unc80|ENSMUSG00000055567.19|unc-80, NALCN activator	ENSMUST00000212557.3|Unc80|ENSMUSG00000055567.19|unc-80, NALCN activator
mm39_v1_chr8_-_47805383_47805401	0.0648444	AUAAAGU	ENSMUST00000110367.10|Stox2|ENSMUSG00000038143.17|storkhead box 2
mm39_v1_chr8_+_80366247_80366333	0.0640002	AUAAAGU	ENSMUST00000173078.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4	ENSMUST00000173286.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4
mm39_v1_chr5_-_148489457_148489498	0.0638935	AUAAAGU	ENSMUST00000079324.14|Ubl3|ENSMUSG00000001687.16|ubiquitin-like 3
mm39_v1_chr13_+_35059285_35059285	0.0627713	AUAAAGU	ENSMUST00000077853.5|Prpf4b|ENSMUSG00000021413.10|pre-mRNA processing factor 4B
mm39_v1_chr12_-_25146078_25146095	0.0600599	AUAAAGU	ENSMUST00000222667.2|Id2|ENSMUSG00000020644.10|inhibitor of DNA binding 2	ENSMUST00000020974.7|Id2|ENSMUSG00000020644.10|inhibitor of DNA binding 2
mm39_v1_chr5_-_31377847_31378031	0.0587972	AUAAAGU	ENSMUST00000202294.4|Ppm1g|ENSMUSG00000029147.12|protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	ENSMUST00000031032.11|Ppm1g|ENSMUSG00000029147.12|protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform
mm39_v1_chr15_+_102378966_102379220	0.0583187	AUAAAGU	ENSMUST00000077037.13|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229102.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229618.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229275.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000231089.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229802.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229854.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000108838.5|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2
mm39_v1_chr16_-_31821938_31822105	0.0571184	AUAAAGU	ENSMUST00000023457.13|Senp5|ENSMUSG00000022772.13|SUMO/sentrin specific peptidase 5	ENSMUST00000231360.2|Senp5|ENSMUSG00000022772.13|SUMO/sentrin specific peptidase 5
mm39_v1_chr2_+_122016747_122016769	0.0539601	AUAAAGU	ENSMUST00000028661.6|Terb2|ENSMUSG00000027229.6|telomere repeat binding bouquet formation protein 2
mm39_v1_chr1_+_42734889_42734937	0.053934	AUAAAGU	ENSMUST00000054883.4|Pou3f3|ENSMUSG00000045515.5|POU domain, class 3, transcription factor 3
mm39_v1_chr17_+_87270504_87270537	0.0519829	AUAAAGU	ENSMUST00000024956.15|Rhoq|ENSMUSG00000024143.16|ras homolog family member Q
mm39_v1_chr19_-_31742427_31742480	0.0519453	AUAAAGU	ENSMUST00000065067.14|Prkg1|ENSMUSG00000052920.17|protein kinase, cGMP-dependent, type I
mm39_v1_chr7_-_140752726_140752775	0.0517295	AUAAAGU	ENSMUST00000167493.9|Rnh1|ENSMUSG00000038650.16|ribonuclease/angiogenin inhibitor 1
mm39_v1_chr7_+_98484311_98484338	0.0510808	AUAAAGU	ENSMUST00000165122.8|Wnt11|ENSMUSG00000015957.13|wingless-type MMTV integration site family, member 11	ENSMUST00000067495.9|Wnt11|ENSMUSG00000015957.13|wingless-type MMTV integration site family, member 11
mm39_v1_chr7_-_73663422_73663446	0.0487412	AUAAAGU	ENSMUST00000026896.10|St8sia2|ENSMUSG00000025789.10|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	ENSMUST00000191970.2|St8sia2|ENSMUSG00000025789.10|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
mm39_v1_chr11_-_18968979_18968990	0.0485712	AUAAAGU	ENSMUST00000144988.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr12_-_80483343_80483379	0.0482	AUAAAGU	ENSMUST00000054145.8|Dcaf5|ENSMUSG00000049106.8|DDB1 and CUL4 associated factor 5
mm39_v1_chr5_-_123887434_123887483	0.0480786	AUAAAGU	ENSMUST00000182955.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000182489.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000183147.9|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000050827.14|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000057795.12|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000111515.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000182309.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2
mm39_v1_chr6_-_97182509_97182608	0.0466584	AUAAAGU	ENSMUST00000164744.8|Uba3|ENSMUSG00000030061.17|ubiquitin-like modifier activating enzyme 3	ENSMUST00000089287.7|Uba3|ENSMUSG00000030061.17|ubiquitin-like modifier activating enzyme 3
mm39_v1_chr1_-_138770167_138770195	0.0460408	AUAAAGU	ENSMUST00000112026.4|Lhx9|ENSMUSG00000019230.15|LIM homeobox protein 9	ENSMUST00000019374.14|Lhx9|ENSMUSG00000019230.15|LIM homeobox protein 9
mm39_v1_chr4_+_34614939_34615002	0.0439836	AUAAAGU	ENSMUST00000029968.14|Rars2|ENSMUSG00000028292.15|arginyl-tRNA synthetase 2, mitochondrial	ENSMUST00000148519.3|Rars2|ENSMUSG00000028292.15|arginyl-tRNA synthetase 2, mitochondrial
mm39_v1_chr12_-_87346479_87346479	0.041989	AUAAAGU	ENSMUST00000125733.8|Ism2|ENSMUSG00000050671.13|isthmin 2
mm39_v1_chr2_-_34262012_34262056	0.0407603	AUAAAGU	ENSMUST00000113132.9|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3	ENSMUST00000040638.15|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3
mm39_v1_chr1_+_105918383_105918450	0.0402013	AUAAAGU	ENSMUST00000119166.8|Zcchc2|ENSMUSG00000038866.16|zinc finger, CCHC domain containing 2
mm39_v1_chr8_-_79547707_79547769	0.0401609	AUAAAGU	ENSMUST00000130325.8|Lsm6|ENSMUSG00000031683.17|LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	ENSMUST00000051867.7|Lsm6|ENSMUSG00000031683.17|LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
mm39_v1_chr7_+_78922947_78922973	0.0400098	AUAAAGU	ENSMUST00000037315.13|Abhd2|ENSMUSG00000039202.13|abhydrolase domain containing 2
mm39_v1_chr4_+_97665843_97665870	0.0399338	AUAAAGU	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr2_-_125565307_125565457	0.038495	AUAAAGU	ENSMUST00000042246.14|Shc4|ENSMUSG00000035109.15|SHC (Src homology 2 domain containing) family, member 4
mm39_v1_chrX_-_164110372_164110416	0.0377931	AUAAAGU	ENSMUST00000058787.9|Glra2|ENSMUSG00000018589.9|glycine receptor, alpha 2 subunit
mm39_v1_chr5_-_122492223_122492300	0.0369448	AUAAAGU	ENSMUST00000117263.8|Rad9b|ENSMUSG00000038569.14|RAD9 checkpoint clamp component B	ENSMUST00000049009.7|Rad9b|ENSMUSG00000038569.14|RAD9 checkpoint clamp component B
mm39_v1_chr6_-_99643723_99643784	0.0357113	AUAAAGU	ENSMUST00000032151.3|Eif4e3|ENSMUSG00000093661.2|eukaryotic translation initiation factor 4E member 3
mm39_v1_chr6_+_114620054_114620066	0.0352869	AUAAAGU	ENSMUST00000032457.17|Atg7|ENSMUSG00000030314.17|autophagy related 7
mm39_v1_chr2_+_55327110_55327194	0.0349994	AUAAAGU	ENSMUST00000112633.3|Kcnj3|ENSMUSG00000026824.12|potassium inwardly-rectifying channel, subfamily J, member 3	ENSMUST00000112632.2|Kcnj3|ENSMUSG00000026824.12|potassium inwardly-rectifying channel, subfamily J, member 3
mm39_v1_chr17_-_33979442_33979504	0.0344421	AUAAAGU	ENSMUST00000057373.14|Rab11b|ENSMUSG00000077450.14|RAB11B, member RAS oncogene family
mm39_v1_chr3_-_63872189_63872208	0.0334731	AUAAAGU	ENSMUST00000029402.15|Slc33a1|ENSMUSG00000027822.17|solute carrier family 33 (acetyl-CoA transporter), member 1
mm39_v1_chr12_+_16944896_16944904	0.0334569	AUAAAGU	ENSMUST00000020904.8|Rock2|ENSMUSG00000020580.11|Rho-associated coiled-coil containing protein kinase 2
mm39_v1_chr16_-_32065972_32065997	0.0328933	AUAAAGU	ENSMUST00000042732.6|Fbxo45|ENSMUSG00000035764.6|F-box protein 45
mm39_v1_chr12_-_75224099_75224133	0.0298672	AUAAAGU	ENSMUST00000042299.4|Kcnh5|ENSMUSG00000034402.4|potassium voltage-gated channel, subfamily H (eag-related), member 5
mm39_v1_chr14_+_30673409_30673426	0.0290214	AUAAAGU	ENSMUST00000050171.10|Nek4|ENSMUSG00000021918.11|NIMA (never in mitosis gene a)-related expressed kinase 4
mm39_v1_chr10_+_42378193_42378286	0.028038	AUAAAGU	ENSMUST00000105499.2|Snx3|ENSMUSG00000019804.13|sorting nexin 3
mm39_v1_chr13_+_95012107_95012119	0.0275843	AUAAAGU	ENSMUST00000022195.13|Otp|ENSMUSG00000021685.13|orthopedia homeobox
mm39_v1_chr4_+_11156411_11156453	0.0272118	AUAAAGU	ENSMUST00000029865.4|Trp53inp1|ENSMUSG00000028211.12|transformation related protein 53 inducible nuclear protein 1
mm39_v1_chr18_+_76374651_76374804	0.0259568	AUAAAGU	ENSMUST00000168423.9|Smad2|ENSMUSG00000024563.17|SMAD family member 2	ENSMUST00000091831.13|Smad2|ENSMUSG00000024563.17|SMAD family member 2
mm39_v1_chr6_-_148797648_148797735	0.0256871	AUAAAGU	ENSMUST00000072324.12|Caprin2|ENSMUSG00000030309.17|caprin family member 2	ENSMUST00000111569.9|Caprin2|ENSMUSG00000030309.17|caprin family member 2
mm39_v1_chr3_+_95566082_95566168	0.0250375	AUAAAGU	ENSMUST00000037947.15|Mcl1|ENSMUSG00000038612.17|myeloid cell leukemia sequence 1	ENSMUST00000178686.2|Mcl1|ENSMUSG00000038612.17|myeloid cell leukemia sequence 1
mm39_v1_chr10_+_45211847_45211868	0.0236861	AUAAAGU	ENSMUST00000095715.5|Bves|ENSMUSG00000071317.5|blood vessel epicardial substance
mm39_v1_chr14_-_67309866_67309925	0.0233153	AUAAAGU	ENSMUST00000225380.2|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha	ENSMUST00000089230.7|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha
mm39_v1_chr4_-_15149051_15149131	0.021283	AUAAAGU	ENSMUST00000041606.14|Necab1|ENSMUSG00000040536.16|N-terminal EF-hand calcium binding protein 1
mm39_v1_chr2_+_129642371_129642493	0.0194058	AUAAAGU	ENSMUST00000165413.9|Stk35|ENSMUSG00000037885.19|serine/threonine kinase 35	ENSMUST00000166282.3|Stk35|ENSMUSG00000037885.19|serine/threonine kinase 35
mm39_v1_chr10_-_118130943_118130943	0.0192688	AUAAAGU	ENSMUST00000163808.2|Iltifb|ENSMUSG00000090461.3|interleukin 10-related T cell-derived inducible factor beta
mm39_v1_chr4_+_58285957_58285975	0.0177717	AUAAAGU	ENSMUST00000081919.12|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000177951.8|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000098059.10|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000179951.2|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000102893.10|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000084578.12|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000098057.10|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase
mm39_v1_chr17_+_25407352_25407392	0.0167593	AUAAAGU	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr14_-_103336990_103337007	0.0152934	AUAAAGU	ENSMUST00000022720.15|Fbxl3|ENSMUSG00000022124.16|F-box and leucine-rich repeat protein 3	ENSMUST00000144141.8|Fbxl3|ENSMUSG00000022124.16|F-box and leucine-rich repeat protein 3
mm39_v1_chr8_-_9821021_9821161	0.0142001	AUAAAGU	ENSMUST00000208933.2|Fam155a|ENSMUSG00000079157.5|family with sequence similarity 155, member A	ENSMUST00000110969.5|Fam155a|ENSMUSG00000079157.5|family with sequence similarity 155, member A
mm39_v1_chr8_+_120637531_120637596	0.0138508	AUAAAGU	ENSMUST00000108988.9|Usp10|ENSMUSG00000031826.21|ubiquitin specific peptidase 10	ENSMUST00000127664.2|Galnt2l|ENSMUSG00000092329.2|polypeptide N-acetylgalactosaminyltransferase 2-like	ENSMUST00000108982.11|Usp10|ENSMUSG00000031826.21|ubiquitin specific peptidase 10
mm39_v1_chr1_+_132345293_132345348	0.0123825	AUAAAGU	ENSMUST00000045110.14|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase	ENSMUST00000188389.2|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase
mm39_v1_chr16_+_51851588_51851705	0.0116359	AUAAAGU	ENSMUST00000114471.3|Cblb|ENSMUSG00000022637.12|Casitas B-lineage lymphoma b
mm39_v1_chr1_-_165830160_165830182	0.0103508	AUAAAGU	ENSMUST00000111429.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000176800.2|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000177358.8|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr11_-_40583493_40583601	0.00982161	AUAAAGU	ENSMUST00000040167.11|Mat2b|ENSMUSG00000042032.14|methionine adenosyltransferase II, beta
mm39_v1_chr7_-_57036920_57036972	0.00814885	AUAAAGU	ENSMUST00000068911.13|Gabrg3|ENSMUSG00000055026.14|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3
mm39_v1_chr11_-_99932373_99932387	0.00657425	AUAAAGU	ENSMUST00000056362.3|Krt34|ENSMUSG00000043485.3|keratin 34
mm39_v1_chr10_-_117212860_117212883	0.0050065	AUAAAGU	ENSMUST00000069168.13|Cpsf6|ENSMUSG00000055531.13|cleavage and polyadenylation specific factor 6	ENSMUST00000176686.8|Cpsf6|ENSMUSG00000055531.13|cleavage and polyadenylation specific factor 6
mm39_v1_chr12_+_3476857_3476925	0.00403451	AUAAAGU	ENSMUST00000111215.10|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000092003.12|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000144247.9|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000153102.9|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2
mm39_v1_chr14_+_31058589_31058676	0.00374773	AUAAAGU	ENSMUST00000022451.14|Capn7|ENSMUSG00000021893.15|calpain 7
mm39_v1_chr15_-_53765869_53765926	0.00195911	AUAAAGU	ENSMUST00000078673.14|Samd12|ENSMUSG00000058656.14|sterile alpha motif domain containing 12
mm39_v1_chr11_+_64326141_64326164	0.00148239	AUAAAGU	ENSMUST00000058652.6|Hs3st3a1|ENSMUSG00000047759.7|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1
mm39_v1_chr2_-_114031897_114031950	0.000886523	AUAAAGU	ENSMUST00000050668.4|Zfp770|ENSMUSG00000040321.4|zinc finger protein 770
mm39_v1_chr13_+_74157538_74157572	0.000774407	AUAAAGU	ENSMUST00000022057.9|Tppp|ENSMUSG00000021573.16|tubulin polymerization promoting protein
mm39_v1_chr4_+_45018583_45018668	0.000599202	AUAAAGU	ENSMUST00000133157.8|Polr1e|ENSMUSG00000028318.15|polymerase (RNA) I polypeptide E	ENSMUST00000029999.15|Polr1e|ENSMUSG00000028318.15|polymerase (RNA) I polypeptide E	ENSMUST00000107814.10|Polr1e|ENSMUSG00000028318.15|polymerase (RNA) I polypeptide E
mm39_v1_chr2_-_156921135_156921196	0.000127536	AUAAAGU	ENSMUST00000069098.7|Soga1|ENSMUSG00000055485.7|suppressor of glucose, autophagy associated 1
