mm39_v1_chrX_-_60229164_60229164	25.9233	Aire	ENSMUST00000166381.3|Cdr1|ENSMUSG00000090546.3|cerebellar degeneration related antigen 1
mm39_v1_chr16_+_22877000_22877143	8.00819	Aire	ENSMUST00000039492.14|Kng1|ENSMUSG00000022875.19|kininogen 1	ENSMUST00000023589.15|Kng1|ENSMUSG00000022875.19|kininogen 1	ENSMUST00000089902.8|Kng1|ENSMUSG00000022875.19|kininogen 1
mm39_v1_chr3_+_82933383_82933522	7.20057	Aire	ENSMUST00000029630.15|Fga|ENSMUSG00000028001.17|fibrinogen alpha chain	ENSMUST00000166581.4|Fga|ENSMUSG00000028001.17|fibrinogen alpha chain
mm39_v1_chr15_+_10358611_10358632	5.85444	Aire	ENSMUST00000110541.8|Agxt2|ENSMUSG00000089678.9|alanine-glyoxylate aminotransferase 2	ENSMUST00000110542.8|Agxt2|ENSMUSG00000089678.9|alanine-glyoxylate aminotransferase 2
mm39_v1_chr19_+_39275518_39275548	5.82998	Aire	ENSMUST00000003137.15|Cyp2c29|ENSMUSG00000003053.18|cytochrome P450, family 2, subfamily c, polypeptide 29
mm39_v1_chr12_+_84098888_84098931	5.48813	Aire	ENSMUST00000120927.8|Acot3|ENSMUSG00000021228.16|acyl-CoA thioesterase 3	ENSMUST00000021653.8|Acot3|ENSMUSG00000021228.16|acyl-CoA thioesterase 3
mm39_v1_chr15_+_10358643_10358684	4.99841	Aire	ENSMUST00000022858.8|Agxt2|ENSMUSG00000089678.9|alanine-glyoxylate aminotransferase 2
mm39_v1_chr16_-_22847808_22847826	4.83388	Aire	ENSMUST00000115349.9|Kng2|ENSMUSG00000060459.15|kininogen 2
mm39_v1_chr16_-_22847829_22847856	4.53881	Aire	ENSMUST00000100046.9|Kng2|ENSMUSG00000060459.15|kininogen 2
mm39_v1_chr5_+_130398261_130398316	4.06395	Aire	ENSMUST00000086029.10|Caln1|ENSMUSG00000060371.13|calneuron 1
mm39_v1_chrM_+_7758_7775	3.89229	Aire	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.1|mitochondrially encoded ATP synthase 8
mm39_v1_chr5_+_137979763_137979819	3.79667	Aire	ENSMUST00000035390.7|Azgp1|ENSMUSG00000037053.7|alpha-2-glycoprotein 1, zinc
mm39_v1_chr10_+_123099945_123099981	3.73	Aire	ENSMUST00000238972.2|Tafa2|ENSMUSG00000044071.10|TAFA chemokine like family member 2	ENSMUST00000050756.8|Tafa2|ENSMUSG00000044071.10|TAFA chemokine like family member 2
mm39_v1_chrM_+_7779_7927	3.56468	Aire	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm39_v1_chrM_+_14138_14154	3.52824	Aire	ENSMUST00000082421.1|mt-Cytb|ENSMUSG00000064370.1|mitochondrially encoded cytochrome b
mm39_v1_chrM_+_11735_11751	3.48697	Aire	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm39_v1_chr5_+_8010445_8010464	3.47284	Aire	ENSMUST00000115421.3|Steap4|ENSMUSG00000012428.10|STEAP family member 4
mm39_v1_chrM_+_9459_9459	3.46656	Aire	ENSMUST00000082411.1|mt-Nd3|ENSMUSG00000064360.1|mitochondrially encoded NADH dehydrogenase 3
mm39_v1_chr2_+_55325931_55325982	3.27128	Aire	ENSMUST00000067101.10|Kcnj3|ENSMUSG00000026824.12|potassium inwardly-rectifying channel, subfamily J, member 3
mm39_v1_chr17_+_35455532_35455594	3.16514	Aire	ENSMUST00000068261.9|Atp6v1g2|ENSMUSG00000024403.17|ATPase, H+ transporting, lysosomal V1 subunit G2
mm39_v1_chr8_+_47439916_47439946	3.13196	Aire	ENSMUST00000039840.15|Enpp6|ENSMUSG00000038173.16|ectonucleotide pyrophosphatase/phosphodiesterase 6
mm39_v1_chr10_-_95678748_95678758	3.03384	Aire	ENSMUST00000210336.2|Gm33543|ENSMUSG00000110353.2|predicted gene, 33543
mm39_v1_chr15_+_10981833_10981851	2.98462	Aire	ENSMUST00000070877.7|Amacr|ENSMUSG00000022244.8|alpha-methylacyl-CoA racemase
mm39_v1_chr10_-_95678786_95678808	2.97897	Aire	ENSMUST00000211096.2|Gm33543|ENSMUSG00000110353.2|predicted gene, 33543
mm39_v1_chr9_-_110818679_110818796	2.93572	Aire	ENSMUST00000084922.6|Rtp3|ENSMUSG00000066319.7|receptor transporter protein 3	ENSMUST00000199891.2|Rtp3|ENSMUSG00000066319.7|receptor transporter protein 3
mm39_v1_chrM_-_14061_14077	2.74478	Aire	ENSMUST00000082419.1|mt-Nd6|ENSMUSG00000064368.1|mitochondrially encoded NADH dehydrogenase 6
mm39_v1_chr9_+_109645686_109645706	2.65122	Aire	ENSMUST00000118732.4|Spink8|ENSMUSG00000050074.13|serine peptidase inhibitor, Kazal type 8
mm39_v1_chr10_+_33733706_33733717	2.60547	Aire	ENSMUST00000218204.2|Sult3a1|ENSMUSG00000069668.5|sulfotransferase family 3A, member 1
mm39_v1_chr5_+_31079177_31079210	2.58454	Aire	ENSMUST00000031053.15|Khk|ENSMUSG00000029162.16|ketohexokinase	ENSMUST00000202752.2|Khk|ENSMUSG00000029162.16|ketohexokinase
mm39_v1_chr9_+_109645606_109645617	2.48626	Aire	ENSMUST00000198988.5|Spink8|ENSMUSG00000050074.13|serine peptidase inhibitor, Kazal type 8
mm39_v1_chr18_+_37858753_37858810	2.45234	Aire	ENSMUST00000066149.9|Pcdhga8|ENSMUSG00000103897.2|protocadherin gamma subfamily A, 8
mm39_v1_chr7_-_84059170_84059210	2.44308	Aire	ENSMUST00000208995.2|Arnt2|ENSMUSG00000015709.10|aryl hydrocarbon receptor nuclear translocator 2
mm39_v1_chr4_+_115268821_115268821	2.38416	Aire	ENSMUST00000094887.4|Cyp4a12b|ENSMUSG00000078597.3|cytochrome P450, family 4, subfamily a, polypeptide 12B
mm39_v1_chr7_-_45136235_45136235	2.27367	Aire	ENSMUST00000210701.2|Gm45808|ENSMUSG00000109926.2|predicted gene 45808
mm39_v1_chr17_-_59320257_59320367	2.27017	Aire	ENSMUST00000174122.2|Nudt12|ENSMUSG00000024228.13|nudix (nucleoside diphosphate linked moiety X)-type motif 12	ENSMUST00000025065.12|Nudt12|ENSMUSG00000024228.13|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm39_v1_chr10_-_127587576_127587606	2.25006	Aire	ENSMUST00000079692.6|Gpr182|ENSMUSG00000058396.8|G protein-coupled receptor 182
mm39_v1_chr7_+_45546365_45546525	2.23661	Aire	ENSMUST00000069772.16|Tmem143|ENSMUSG00000002781.20|transmembrane protein 143	ENSMUST00000210503.2|Tmem143|ENSMUSG00000002781.20|transmembrane protein 143	ENSMUST00000209350.2|Tmem143|ENSMUSG00000002781.20|transmembrane protein 143
mm39_v1_chr7_-_126275529_126275604	2.21097	Aire	ENSMUST00000106372.11|Sult1a1|ENSMUSG00000030711.17|sulfotransferase family 1A, phenol-preferring, member 1	ENSMUST00000155419.3|Sult1a1|ENSMUSG00000030711.17|sulfotransferase family 1A, phenol-preferring, member 1	ENSMUST00000106373.9|Sult1a1|ENSMUSG00000030711.17|sulfotransferase family 1A, phenol-preferring, member 1
mm39_v1_chr1_-_5140504_5140511	2.15607	Aire	ENSMUST00000147158.2|Rgs20|ENSMUSG00000002459.18|regulator of G-protein signaling 20	ENSMUST00000118000.8|Rgs20|ENSMUSG00000002459.18|regulator of G-protein signaling 20
mm39_v1_chr10_-_106959444_106959460	2.037	Aire	ENSMUST00000165067.9|Acss3|ENSMUSG00000035948.14|acyl-CoA synthetase short-chain family member 3
mm39_v1_chr3_+_107008343_107008462	1.98349	Aire	ENSMUST00000197470.5|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chrM_+_8603_8615	1.9268	Aire	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm39_v1_chr19_+_46695889_46695950	1.92498	Aire	ENSMUST00000003655.9|As3mt|ENSMUSG00000003559.9|arsenite methyltransferase
mm39_v1_chr7_-_127494750_127494821	1.92047	Aire	ENSMUST00000033074.8|Vkorc1|ENSMUSG00000096145.3|vitamin K epoxide reductase complex, subunit 1
mm39_v1_chr5_-_84565218_84565248	1.90048	Aire	ENSMUST00000113401.4|Epha5|ENSMUSG00000029245.17|Eph receptor A5
mm39_v1_chr2_-_134486039_134486065	1.86843	Aire	ENSMUST00000038228.11|Tmx4|ENSMUSG00000034723.12|thioredoxin-related transmembrane protein 4
mm39_v1_chr11_-_101308441_101308441	1.815	Aire	ENSMUST00000070395.9|Aarsd1|ENSMUSG00000075528.14|alanyl-tRNA synthetase domain containing 1
mm39_v1_chr6_+_126916956_126916992	1.79217	Aire	ENSMUST00000201617.2|D6Wsu163e|ENSMUSG00000030347.7|DNA segment, Chr 6, Wayne State University 163, expressed
mm39_v1_chr11_-_49077864_49077903	1.74079	Aire	ENSMUST00000153999.3|Btnl9|ENSMUSG00000040283.15|butyrophilin-like 9	ENSMUST00000066531.13|Btnl9|ENSMUSG00000040283.15|butyrophilin-like 9
mm39_v1_chr9_-_19163273_19163283	1.73053	Aire	ENSMUST00000214019.2|Olfr843|ENSMUSG00000048391.4|olfactory receptor 843	ENSMUST00000214267.2|Olfr843|ENSMUSG00000048391.4|olfactory receptor 843
mm39_v1_chr15_-_76809607_76809648	1.71778	Aire	ENSMUST00000229865.2|Zfp647|ENSMUSG00000054967.8|zinc finger protein 647	ENSMUST00000229055.2|Zfp647|ENSMUSG00000054967.8|zinc finger protein 647
mm39_v1_chr5_-_105491795_105491795	1.71505	Aire	ENSMUST00000171587.2|Gbp11|ENSMUSG00000092021.9|guanylate binding protein 11
mm39_v1_chr8_-_4267260_4267312	1.69809	Aire	ENSMUST00000168386.9|Prr36|ENSMUSG00000064125.15|proline rich 36
mm39_v1_chr1_+_5658716_5658780	1.68612	Aire	ENSMUST00000160777.8|Oprk1|ENSMUSG00000025905.15|opioid receptor, kappa 1	ENSMUST00000239100.2|Oprk1|ENSMUSG00000025905.15|opioid receptor, kappa 1	ENSMUST00000027038.11|Oprk1|ENSMUSG00000025905.15|opioid receptor, kappa 1
mm39_v1_chr14_+_3575406_3575440	1.67023	Aire	ENSMUST00000124353.2|Ube2e2|ENSMUSG00000058317.13|ubiquitin-conjugating enzyme E2E 2
mm39_v1_chr16_-_30152708_30152708	1.58911	Aire	ENSMUST00000229503.2|Atp13a3|ENSMUSG00000022533.15|ATPase type 13A3
mm39_v1_chrM_+_7006_7021	1.55762	Aire	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm39_v1_chr11_-_115518774_115518948	1.54395	Aire	ENSMUST00000154623.2|Slc25a19|ENSMUSG00000020744.14|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	ENSMUST00000106503.10|Slc25a19|ENSMUSG00000020744.14|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	ENSMUST00000141614.3|Slc25a19|ENSMUSG00000020744.14|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm39_v1_chr2_-_134485936_134485962	1.50866	Aire	ENSMUST00000110120.2|Tmx4|ENSMUSG00000034723.12|thioredoxin-related transmembrane protein 4
mm39_v1_chr14_+_52964069_52964069	1.42137	Aire	ENSMUST00000184883.2|Trav6d-3|ENSMUSG00000096600.6|T cell receptor alpha variable 6D-3
mm39_v1_chr6_+_42222841_42222910	1.41051	Aire	ENSMUST00000031897.8|Gstk1|ENSMUSG00000029864.8|glutathione S-transferase kappa 1
mm39_v1_chr13_+_64309675_64309729	1.37912	Aire	ENSMUST00000021929.10|Habp4|ENSMUSG00000021476.10|hyaluronic acid binding protein 4
mm39_v1_chrX_+_73171069_73171075	1.36608	Aire	ENSMUST00000033771.11|Opn1mw|ENSMUSG00000031394.12|opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)	ENSMUST00000101457.10|Opn1mw|ENSMUSG00000031394.12|opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)
mm39_v1_chr6_-_131655849_131655849	1.32381	Aire	ENSMUST00000076756.3|Tas2r106|ENSMUSG00000057754.3|taste receptor, type 2, member 106
mm39_v1_chr9_-_49479791_49479849	1.31706	Aire	ENSMUST00000194252.6|Ncam1|ENSMUSG00000039542.17|neural cell adhesion molecule 1
mm39_v1_chr10_-_130116088_130116111	1.3144	Aire	ENSMUST00000061571.5|Neurod4|ENSMUSG00000048015.5|neurogenic differentiation 4
mm39_v1_chr8_-_4267131_4267169	1.27359	Aire	ENSMUST00000175906.2|Prr36|ENSMUSG00000064125.15|proline rich 36
mm39_v1_chr14_+_53531798_53531798	1.26468	Aire	ENSMUST00000103626.3|Trav9n-4|ENSMUSG00000094231.3|T cell receptor alpha variable 9N-4
mm39_v1_chr8_-_4266912_4267008	1.25773	Aire	ENSMUST00000177491.8|Prr36|ENSMUSG00000064125.15|proline rich 36
mm39_v1_chr15_+_89095724_89095823	1.25293	Aire	ENSMUST00000227951.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000226221.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000238818.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000228284.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2
mm39_v1_chrX_-_63319428_63319546	1.2128	Aire	ENSMUST00000156121.2|Slitrk4|ENSMUSG00000046699.15|SLIT and NTRK-like family, member 4
mm39_v1_chr3_-_89319088_89319202	1.20692	Aire	ENSMUST00000107429.10|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1	ENSMUST00000129308.9|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1	ENSMUST00000107426.8|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1	ENSMUST00000050398.11|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1	ENSMUST00000162701.2|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1
mm39_v1_chr7_-_12096691_12096691	1.1891	Aire	ENSMUST00000086228.3|Vmn1r84|ENSMUSG00000066803.3|vomeronasal 1 receptor 84
mm39_v1_chr6_+_91678630_91678643	1.18379	Aire	ENSMUST00000205828.2|Slc6a6|ENSMUSG00000030096.9|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm39_v1_chr3_+_107008867_107008883	1.14519	Aire	ENSMUST00000038695.6|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr2_-_134485999_134486034	1.12624	Aire	ENSMUST00000110119.2|Tmx4|ENSMUSG00000034723.12|thioredoxin-related transmembrane protein 4
mm39_v1_chr6_-_71376277_71376332	1.12149	Aire	ENSMUST00000149415.2|Rmnd5a|ENSMUSG00000002222.15|required for meiotic nuclear division 5 homolog A
mm39_v1_chr15_-_75793312_75793409	1.10504	Aire	ENSMUST00000053918.9|Pycrl|ENSMUSG00000022571.10|pyrroline-5-carboxylate reductase-like
mm39_v1_chr8_+_112370088_112370170	1.10493	Aire	ENSMUST00000077791.8|Zfp1|ENSMUSG00000055835.11|zinc finger protein 1	ENSMUST00000211926.2|Zfp1|ENSMUSG00000055835.11|zinc finger protein 1
mm39_v1_chr9_+_45924105_45924119	1.08226	Aire	ENSMUST00000126865.8|Sik3|ENSMUSG00000034135.16|SIK family kinase 3
mm39_v1_chr17_+_21869545_21869545	1.01664	Aire	ENSMUST00000232827.2|Zfp983|ENSMUSG00000035868.10|zinc finger protein 983
mm39_v1_chr16_-_91415873_91415914	1.00267	Aire	ENSMUST00000143058.2|Dnajc28|ENSMUSG00000039763.11|DnaJ heat shock protein family (Hsp40) member C28	ENSMUST00000049244.10|Dnajc28|ENSMUSG00000039763.11|DnaJ heat shock protein family (Hsp40) member C28	ENSMUST00000169982.2|Dnajc28|ENSMUSG00000039763.11|DnaJ heat shock protein family (Hsp40) member C28	ENSMUST00000133731.2|Dnajc28|ENSMUSG00000039763.11|DnaJ heat shock protein family (Hsp40) member C28
mm39_v1_chr15_-_98063493_98063506	0.991696	Aire	ENSMUST00000143400.8|Asb8|ENSMUSG00000048175.14|ankyrin repeat and SOCS box-containing 8
mm39_v1_chr2_+_175125091_175125091	0.979381	Aire	ENSMUST00000098998.4|Gm14440|ENSMUSG00000078901.9|predicted gene 14440
mm39_v1_chr2_+_176123622_176123622	0.979381	Aire	ENSMUST00000172025.2|Zfp968-ps|ENSMUSG00000089951.9|zinc finger protein 968, pseudogene
mm39_v1_chr6_-_131662707_131662707	0.97215	Aire	ENSMUST00000072404.3|Tas2r104|ENSMUSG00000061977.3|taste receptor, type 2, member 104
mm39_v1_chr2_-_36975758_36975758	0.964865	Aire	ENSMUST00000100145.2|Olfr361|ENSMUSG00000075378.3|olfactory receptor 361
mm39_v1_chr1_+_44159106_44159147	0.962573	Aire	ENSMUST00000114709.3|Bivm|ENSMUSG00000041684.12|basic, immunoglobulin-like variable motif containing	ENSMUST00000129068.2|Bivm|ENSMUSG00000041684.12|basic, immunoglobulin-like variable motif containing
mm39_v1_chr3_-_62414391_62414448	0.958802	Aire	ENSMUST00000029336.6|Dhx36|ENSMUSG00000027770.6|DEAH (Asp-Glu-Ala-His) box polypeptide 36
mm39_v1_chr3_+_89366425_89366485	0.957445	Aire	ENSMUST00000029564.12|Pmvk|ENSMUSG00000027952.17|phosphomevalonate kinase
mm39_v1_chr8_+_112370033_112370082	0.954078	Aire	ENSMUST00000212072.2|Zfp1|ENSMUSG00000055835.11|zinc finger protein 1
mm39_v1_chr5_-_124492734_124492839	0.946949	Aire	ENSMUST00000031341.11|Cdk2ap1|ENSMUSG00000029394.12|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm39_v1_chr6_-_39787813_39787922	0.945401	Aire	ENSMUST00000114797.2|Mrps33|ENSMUSG00000029918.10|mitochondrial ribosomal protein S33	ENSMUST00000031978.9|Mrps33|ENSMUSG00000029918.10|mitochondrial ribosomal protein S33
mm39_v1_chr12_+_37292029_37292041	0.943901	Aire	ENSMUST00000160390.2|Agmo|ENSMUSG00000050103.19|alkylglycerol monooxygenase
mm39_v1_chr11_-_58461379_58461400	0.926707	Aire	ENSMUST00000216758.2|Olfr224|ENSMUSG00000059279.12|olfactory receptor 224
mm39_v1_chr14_-_57809008_57809069	0.917399	Aire	ENSMUST00000022518.8|Eef1akmt1|ENSMUSG00000021951.8|EEF1A alpha lysine methyltransferase 1	ENSMUST00000239099.2|Eef1akmt1|ENSMUSG00000021951.8|EEF1A alpha lysine methyltransferase 1
mm39_v1_chr3_+_94350622_94350652	0.900059	Aire	ENSMUST00000029786.14|Mrpl9|ENSMUSG00000028140.14|mitochondrial ribosomal protein L9	ENSMUST00000196143.2|Mrpl9|ENSMUSG00000028140.14|mitochondrial ribosomal protein L9
mm39_v1_chr6_+_126916919_126916951	0.887382	Aire	ENSMUST00000032497.7|D6Wsu163e|ENSMUSG00000030347.7|DNA segment, Chr 6, Wayne State University 163, expressed
mm39_v1_chr9_+_45924120_45924298	0.882773	Aire	ENSMUST00000120463.9|Sik3|ENSMUSG00000034135.16|SIK family kinase 3	ENSMUST00000120247.8|Sik3|ENSMUSG00000034135.16|SIK family kinase 3
mm39_v1_chr16_-_55755208_55755243	0.882125	Aire	ENSMUST00000121129.8|Cep97|ENSMUSG00000022604.19|centrosomal protein 97	ENSMUST00000023270.14|Cep97|ENSMUSG00000022604.19|centrosomal protein 97
mm39_v1_chr2_+_87854404_87854404	0.856257	Aire	ENSMUST00000217006.2|Olfr1161|ENSMUSG00000045150.6|olfactory receptor 1161
mm39_v1_chr1_-_171108754_171108766	0.838431	Aire	ENSMUST00000073120.11|Ppox|ENSMUSG00000062729.13|protoporphyrinogen oxidase
mm39_v1_chr3_+_89622323_89622388	0.828564	Aire	ENSMUST00000098924.9|Adar|ENSMUSG00000027951.17|adenosine deaminase, RNA-specific
mm39_v1_chr5_+_24305577_24305623	0.826889	Aire	ENSMUST00000030841.10|Klhl7|ENSMUSG00000028986.13|kelch-like 7	ENSMUST00000163409.5|Klhl7|ENSMUSG00000028986.13|kelch-like 7
mm39_v1_chr12_+_69343450_69343574	0.826337	Aire	ENSMUST00000021362.5|Klhdc2|ENSMUSG00000020978.11|kelch domain containing 2
mm39_v1_chr6_-_91492860_91492871	0.811471	Aire	ENSMUST00000206476.2|Xpc|ENSMUSG00000030094.9|xeroderma pigmentosum, complementation group C	ENSMUST00000032182.5|Xpc|ENSMUSG00000030094.9|xeroderma pigmentosum, complementation group C
mm39_v1_chr6_-_66656668_66656668	0.802284	Aire	ENSMUST00000071414.2|Vmn1r35|ENSMUSG00000060699.3|vomeronasal 1 receptor 35
mm39_v1_chr1_+_21438462_21438555	0.790993	Aire	ENSMUST00000070223.6|Khdc1c|ENSMUSG00000041722.8|KH domain containing 1C
mm39_v1_chrX_-_77289527_77289527	0.781819	Aire	ENSMUST00000114026.3|Gm14743|ENSMUSG00000079519.3|predicted gene 14743
mm39_v1_chr18_+_36926929_36926992	0.738208	Aire	ENSMUST00000001419.10|Zmat2|ENSMUSG00000001383.10|zinc finger, matrin type 2
mm39_v1_chr11_+_97206542_97206734	0.712373	Aire	ENSMUST00000019026.10|Mrpl45|ENSMUSG00000018882.13|mitochondrial ribosomal protein L45	ENSMUST00000132168.2|Mrpl45|ENSMUSG00000018882.13|mitochondrial ribosomal protein L45
mm39_v1_chr17_+_18801989_18801989	0.704775	Aire	ENSMUST00000165692.8|Vmn2r96|ENSMUSG00000091679.10|vomeronasal 2, receptor 96
mm39_v1_chrX_+_77230380_77230386	0.701617	Aire	ENSMUST00000088198.4|Obp1b|ENSMUSG00000067679.4|odorant binding protein IB
mm39_v1_chr12_-_79030250_79030267	0.701217	Aire	ENSMUST00000070174.14|Tmem229b|ENSMUSG00000046157.14|transmembrane protein 229B
mm39_v1_chr7_+_20505110_20505110	0.692128	Aire	ENSMUST00000174538.2|Vmn1r112|ENSMUSG00000094284.2|vomeronasal 1 receptor 112
mm39_v1_chr6_-_68968278_68968331	0.688749	Aire	ENSMUST00000197966.2|Igkv4-81|ENSMUSG00000076539.4|immunoglobulin kappa variable 4-81
mm39_v1_chr13_+_55593116_55593274	0.671194	Aire	ENSMUST00000001115.16|Grk6|ENSMUSG00000074886.12|G protein-coupled receptor kinase 6	ENSMUST00000224995.2|Grk6|ENSMUSG00000074886.12|G protein-coupled receptor kinase 6	ENSMUST00000225925.2|Grk6|ENSMUSG00000074886.12|G protein-coupled receptor kinase 6	ENSMUST00000099482.5|Grk6|ENSMUSG00000074886.12|G protein-coupled receptor kinase 6	ENSMUST00000224118.2|Grk6|ENSMUSG00000074886.12|G protein-coupled receptor kinase 6
mm39_v1_chr10_+_52234863_52234863	0.670868	Aire	ENSMUST00000180473.2|Gm26741|ENSMUSG00000097704.2|predicted gene, 26741
mm39_v1_chr8_-_85663976_85663996	0.66093	Aire	ENSMUST00000109741.9|Mast1|ENSMUSG00000053693.17|microtubule associated serine/threonine kinase 1	ENSMUST00000119820.2|Mast1|ENSMUSG00000053693.17|microtubule associated serine/threonine kinase 1
mm39_v1_chr14_+_55170152_55170152	0.646265	Aire	ENSMUST00000037863.6|Il25|ENSMUSG00000040770.6|interleukin 25
mm39_v1_chrX_+_135418748_135418762	0.63805	Aire	ENSMUST00000113104.8|Kir3dl1|ENSMUSG00000031424.17|killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1	ENSMUST00000113105.3|Kir3dl1|ENSMUSG00000031424.17|killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1
mm39_v1_chr19_-_5713728_5713739	0.637359	Aire	ENSMUST00000169854.2|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1
mm39_v1_chr10_+_80662490_80662527	0.631553	Aire	ENSMUST00000060987.15|Oaz1|ENSMUSG00000035242.16|ornithine decarboxylase antizyme 1	ENSMUST00000177850.8|Oaz1|ENSMUSG00000035242.16|ornithine decarboxylase antizyme 1	ENSMUST00000180036.8|Oaz1|ENSMUSG00000035242.16|ornithine decarboxylase antizyme 1	ENSMUST00000179172.8|Oaz1|ENSMUSG00000035242.16|ornithine decarboxylase antizyme 1
mm39_v1_chr16_-_36695166_36695224	0.613965	Aire	ENSMUST00000075946.12|Eaf2|ENSMUSG00000022838.15|ELL associated factor 2
mm39_v1_chr7_-_102507962_102507972	0.599823	Aire	ENSMUST00000213481.2|Olfr566|ENSMUSG00000060888.5|olfactory receptor 566	ENSMUST00000209952.2|Olfr566|ENSMUSG00000060888.5|olfactory receptor 566
mm39_v1_chr1_-_65225617_65225663	0.589706	Aire	ENSMUST00000186222.7|Idh1|ENSMUSG00000025950.17|isocitrate dehydrogenase 1 (NADP+), soluble	ENSMUST00000169032.8|Idh1|ENSMUSG00000025950.17|isocitrate dehydrogenase 1 (NADP+), soluble	ENSMUST00000191459.2|Idh1|ENSMUSG00000025950.17|isocitrate dehydrogenase 1 (NADP+), soluble	ENSMUST00000188876.7|Idh1|ENSMUSG00000025950.17|isocitrate dehydrogenase 1 (NADP+), soluble
mm39_v1_chr7_+_6463510_6463510	0.565509	Aire	ENSMUST00000056120.5|Olfr1336|ENSMUSG00000048620.7|olfactory receptor 1336
mm39_v1_chr7_-_47251120_47251120	0.559712	Aire	ENSMUST00000176369.2|Mrgpra3|ENSMUSG00000078698.4|MAS-related GPR, member A3
mm39_v1_chr8_+_65399831_65399907	0.5541	Aire	ENSMUST00000026595.13|Tmem192|ENSMUSG00000025521.16|transmembrane protein 192	ENSMUST00000209852.2|Tmem192|ENSMUSG00000025521.16|transmembrane protein 192	ENSMUST00000079896.9|Tmem192|ENSMUSG00000025521.16|transmembrane protein 192
mm39_v1_chr1_-_65225572_65225597	0.548732	Aire	ENSMUST00000188109.7|Idh1|ENSMUSG00000025950.17|isocitrate dehydrogenase 1 (NADP+), soluble
mm39_v1_chr6_+_40941688_40941715	0.537142	Aire	ENSMUST00000076638.7|1810009J06Rik|ENSMUSG00000094808.3|RIKEN cDNA 1810009J06 gene
mm39_v1_chr14_-_50521663_50521663	0.526778	Aire	ENSMUST00000213701.2|Olfr732|ENSMUSG00000091873.3|olfactory receptor 732
mm39_v1_chr13_-_105429514_105429523	0.513155	Aire	ENSMUST00000224011.2|Rnf180|ENSMUSG00000021720.12|ring finger protein 180
mm39_v1_chr7_-_19398930_19398958	0.508173	Aire	ENSMUST00000055242.11|Clptm1|ENSMUSG00000002981.11|cleft lip and palate associated transmembrane protein 1
mm39_v1_chr6_-_58449863_58449863	0.505599	Aire	ENSMUST00000226390.2|Vmn1r31|ENSMUSG00000115404.2|vomeronasal 1 receptor 31
mm39_v1_chr7_-_102774821_102774845	0.499902	Aire	ENSMUST00000211075.3|Olfr586|ENSMUSG00000066268.7|olfactory receptor 586	ENSMUST00000215304.2|Olfr586|ENSMUSG00000066268.7|olfactory receptor 586	ENSMUST00000213281.2|Olfr586|ENSMUSG00000066268.7|olfactory receptor 586
mm39_v1_chr9_+_104424466_104424494	0.495527	Aire	ENSMUST00000098443.9|Cpne4|ENSMUSG00000032564.17|copine IV
mm39_v1_chr7_+_19927635_19927635	0.471125	Aire	ENSMUST00000168984.2|Vmn1r95|ENSMUSG00000094735.2|vomeronasal 1 receptor, 95
mm39_v1_chr6_-_66614736_66614736	0.469566	Aire	ENSMUST00000074381.6|Vmn1r34|ENSMUSG00000091012.3|vomeronasal 1 receptor 34
mm39_v1_chr5_-_121798541_121798582	0.457873	Aire	ENSMUST00000031412.12|Acad10|ENSMUSG00000029456.13|acyl-Coenzyme A dehydrogenase family, member 10	ENSMUST00000111770.2|Acad10|ENSMUSG00000029456.13|acyl-Coenzyme A dehydrogenase family, member 10
mm39_v1_chr5_-_134589025_134589025	0.441089	Aire	ENSMUST00000149604.5|Syna|ENSMUSG00000085957.5|syncytin a
mm39_v1_chr7_+_6392535_6392753	0.427587	Aire	ENSMUST00000207465.2|Zfp28|ENSMUSG00000062861.9|zinc finger protein 28	ENSMUST00000208338.2|Zfp28|ENSMUSG00000062861.9|zinc finger protein 28
mm39_v1_chr1_+_21419819_21419865	0.425435	Aire	ENSMUST00000088407.4|Khdc1a|ENSMUSG00000067750.4|KH domain containing 1A
mm39_v1_chr11_+_62349238_62349295	0.412831	Aire	ENSMUST00000014389.6|Pigl|ENSMUSG00000014245.9|phosphatidylinositol glycan anchor biosynthesis, class L
mm39_v1_chr1_+_173877941_173877941	0.411731	Aire	ENSMUST00000062665.4|Olfr432|ENSMUSG00000047048.5|olfactory receptor 432
mm39_v1_chr15_-_76809590_76809605	0.409944	Aire	ENSMUST00000230677.2|Zfp647|ENSMUSG00000054967.8|zinc finger protein 647
mm39_v1_chr2_+_85420854_85420854	0.408114	Aire	ENSMUST00000052307.5|Olfr998|ENSMUSG00000111454.3|olfactory receptor 998
mm39_v1_chr17_+_18518361_18518361	0.40641	Aire	ENSMUST00000231938.2|Vmn2r93|ENSMUSG00000079698.8|vomeronasal 2, receptor 93	ENSMUST00000079206.8|Vmn2r93|ENSMUSG00000079698.8|vomeronasal 2, receptor 93	ENSMUST00000231879.3|Vmn2r93|ENSMUSG00000079698.8|vomeronasal 2, receptor 93
mm39_v1_chr17_+_20907770_20907770	0.403838	Aire	ENSMUST00000061756.4|Vmn1r226|ENSMUSG00000042848.5|vomeronasal 1 receptor 226
mm39_v1_chr2_-_150531280_150531280	0.403179	Aire	ENSMUST00000046095.10|Vsx1|ENSMUSG00000033080.10|visual system homeobox 1
mm39_v1_chr1_+_65225886_65225921	0.392806	Aire	ENSMUST00000097707.5|Pikfyve|ENSMUSG00000025949.17|phosphoinositide kinase, FYVE type zinc finger containing
mm39_v1_chr15_-_98063441_98063470	0.386333	Aire	ENSMUST00000123922.2|Asb8|ENSMUSG00000048175.14|ankyrin repeat and SOCS box-containing 8
mm39_v1_chr14_-_56448874_56448887	0.365432	Aire	ENSMUST00000022757.5|Gzmf|ENSMUSG00000015441.5|granzyme F
mm39_v1_chr14_-_52634836_52634836	0.342193	Aire	ENSMUST00000214168.2|Olfr1511|ENSMUSG00000063867.3|olfactory receptor 1511
mm39_v1_chr6_+_56933451_56933451	0.337378	Aire	ENSMUST00000096612.4|Vmn1r4|ENSMUSG00000071893.8|vomeronasal 1 receptor 4
mm39_v1_chr4_+_63477018_63477098	0.335199	Aire	ENSMUST00000077709.11|Tmem268|ENSMUSG00000045917.18|transmembrane protein 268
mm39_v1_chr2_+_83554741_83554763	0.319532	Aire	ENSMUST00000028499.11|Itgav|ENSMUSG00000027087.12|integrin alpha V
mm39_v1_chr17_-_21134625_21134625	0.30065	Aire	ENSMUST00000077001.3|Vmn1r232|ENSMUSG00000062165.4|vomeronasal 1 receptor 232
mm39_v1_chr13_-_27574822_27574835	0.296958	Aire	ENSMUST00000102954.10|Prl2b1|ENSMUSG00000069258.11|prolactin family 2, subfamily b, member 1	ENSMUST00000091678.3|Prl2b1|ENSMUSG00000069258.11|prolactin family 2, subfamily b, member 1
mm39_v1_chr2_+_172090412_172090412	0.276447	Aire	ENSMUST00000038532.2|Mc3r|ENSMUSG00000038537.2|melanocortin 3 receptor
mm39_v1_chr2_+_89804937_89804962	0.255725	Aire	ENSMUST00000214630.2|Olfr1260|ENSMUSG00000042894.12|olfactory receptor 1260	ENSMUST00000111512.10|Olfr1260|ENSMUSG00000042894.12|olfactory receptor 1260	ENSMUST00000144710.3|Olfr1260|ENSMUSG00000042894.12|olfactory receptor 1260	ENSMUST00000216678.2|Olfr1260|ENSMUSG00000042894.12|olfactory receptor 1260
mm39_v1_chr9_+_108883907_108883939	0.25387	Aire	ENSMUST00000154184.5|Shisa5|ENSMUSG00000025647.17|shisa family member 5
mm39_v1_chr7_+_25966256_25966256	0.251305	Aire	ENSMUST00000057123.7|Vmn1r184|ENSMUSG00000046130.8|vomeronasal 1 receptor, 184
mm39_v1_chr11_+_48977495_48977527	0.248132	Aire	ENSMUST00000152914.2|Ifi47|ENSMUSG00000078920.4|interferon gamma inducible protein 47
mm39_v1_chr19_-_5713701_5713723	0.245806	Aire	ENSMUST00000164304.9|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1	ENSMUST00000237544.2|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1
mm39_v1_chr10_+_129263175_129263175	0.23581	Aire	ENSMUST00000204529.3|Olfr786|ENSMUSG00000095696.4|olfactory receptor 786
mm39_v1_chr19_-_5713648_5713698	0.216195	Aire	ENSMUST00000080824.13|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1	ENSMUST00000237874.2|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1	ENSMUST00000071857.13|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1	ENSMUST00000236464.2|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1
mm39_v1_chr14_+_21531494_21531508	0.21504	Aire	ENSMUST00000182996.2|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B
mm39_v1_chr3_+_92339886_92339892	0.21252	Aire	ENSMUST00000067102.3|Sprr2k|ENSMUSG00000054215.3|small proline-rich protein 2K
mm39_v1_chrX_-_37665041_37665081	0.207949	Aire	ENSMUST00000050083.6|Cul4b|ENSMUSG00000031095.16|cullin 4B	ENSMUST00000115118.8|Cul4b|ENSMUSG00000031095.16|cullin 4B
mm39_v1_chr7_+_107679062_107679062	0.207728	Aire	ENSMUST00000213601.2|Olfr481|ENSMUSG00000054236.7|olfactory receptor 481
mm39_v1_chr6_-_58412879_58412879	0.19956	Aire	ENSMUST00000078890.5|Vmn1r30|ENSMUSG00000095670.3|vomeronasal 1 receptor 30
mm39_v1_chr9_-_39405284_39405291	0.195378	Aire	ENSMUST00000077757.7|Olfr44|ENSMUSG00000062649.7|olfactory receptor 44	ENSMUST00000215065.3|Olfr44|ENSMUSG00000062649.7|olfactory receptor 44	ENSMUST00000216316.3|Olfr44|ENSMUSG00000062649.7|olfactory receptor 44
mm39_v1_chr2_-_111320501_111320501	0.190821	Aire	ENSMUST00000099616.2|Olfr1290|ENSMUSG00000095809.4|olfactory receptor 1290
mm39_v1_chr9_-_39920878_39920878	0.18999	Aire	ENSMUST00000216463.3|Olfr980|ENSMUSG00000060254.8|olfactory receptor 980
mm39_v1_chr2_+_85519775_85519775	0.18939	Aire	ENSMUST00000054868.2|Olfr1008|ENSMUSG00000050603.2|olfactory receptor 1008
mm39_v1_chr11_-_66943389_66943443	0.17883	Aire	ENSMUST00000116363.2|Adprm|ENSMUSG00000020910.17|ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
mm39_v1_chr7_-_103217838_103217838	0.172155	Aire	ENSMUST00000214806.2|Olfr616|ENSMUSG00000047544.8|olfactory receptor 616
mm39_v1_chr7_-_6491875_6491875	0.17045	Aire	ENSMUST00000036357.7|Olfr1347|ENSMUSG00000034583.10|olfactory receptor 1347	ENSMUST00000220413.2|Olfr1347|ENSMUSG00000034583.10|olfactory receptor 1347
mm39_v1_chr10_+_3822667_3822789	0.164802	Aire	ENSMUST00000136671.8|Plekhg1|ENSMUSG00000040624.19|pleckstrin homology domain containing, family G (with RhoGef domain) member 1	ENSMUST00000042438.13|Plekhg1|ENSMUSG00000040624.19|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
mm39_v1_chr6_-_40976413_40976427	0.162597	Aire	ENSMUST00000166306.3|Gm2663|ENSMUSG00000096525.3|predicted gene 2663
mm39_v1_chr7_+_6477087_6477087	0.157574	Aire	ENSMUST00000056144.7|Olfr1346|ENSMUSG00000054938.8|olfactory receptor 1346
mm39_v1_chr1_+_65225834_65225881	0.149997	Aire	ENSMUST00000081154.14|Pikfyve|ENSMUSG00000025949.17|phosphoinositide kinase, FYVE type zinc finger containing
mm39_v1_chr11_-_83177548_83177555	0.147112	Aire	ENSMUST00000163961.3|Slfn14|ENSMUSG00000082101.4|schlafen 14
mm39_v1_chr1_+_88128323_88128353	0.138487	Aire	ENSMUST00000049289.9|Ugt1a2|ENSMUSG00000090171.2|UDP glucuronosyltransferase 1 family, polypeptide A2
mm39_v1_chr2_-_89159994_89160019	0.132438	Aire	ENSMUST00000213860.2|Olfr1232|ENSMUSG00000075092.3|olfactory receptor 1232	ENSMUST00000215679.2|Olfr1232|ENSMUSG00000075092.3|olfactory receptor 1232
mm39_v1_chr5_-_108943211_108943241	0.118324	Aire	ENSMUST00000004943.2|Tmed11|ENSMUSG00000004821.2|transmembrane p24 trafficking protein 11
mm39_v1_chr12_-_36206626_36206734	0.1031	Aire	ENSMUST00000220828.2|Bzw2|ENSMUSG00000020547.6|basic leucine zipper and W2 domains 2
mm39_v1_chr7_+_104718676_104718676	0.0911213	Aire	ENSMUST00000098160.2|Olfr678|ENSMUSG00000073913.3|olfactory receptor 678
mm39_v1_chr9_-_108140925_108141014	0.0488539	Aire	ENSMUST00000171412.7|Dag1|ENSMUSG00000039952.16|dystroglycan 1	ENSMUST00000195429.6|Dag1|ENSMUSG00000039952.16|dystroglycan 1	ENSMUST00000080435.9|Dag1|ENSMUSG00000039952.16|dystroglycan 1
mm39_v1_chr12_+_36207113_36207131	0.0433191	Aire	ENSMUST00000041640.5|Ankmy2|ENSMUSG00000036188.5|ankyrin repeat and MYND domain containing 2
mm39_v1_chr14_+_51351880_51351895	0.0375197	Aire	ENSMUST00000100645.5|Eddm3b|ENSMUSG00000072575.5|epididymal protein 3B
mm39_v1_chr9_+_38164715_38164715	0.0251051	Aire	ENSMUST00000093865.3|Olfr143|ENSMUSG00000094778.4|olfactory receptor 143
mm39_v1_chr7_+_104963189_104963189	0.0234973	Aire	ENSMUST00000098153.3|Olfr689|ENSMUSG00000073907.4|olfactory receptor 689
mm39_v1_chr11_-_96002784_96002814	0.0223272	Aire	ENSMUST00000097162.6|Calcoco2|ENSMUSG00000006056.14|calcium binding and coiled-coil domain 2	ENSMUST00000068686.13|Calcoco2|ENSMUSG00000006056.14|calcium binding and coiled-coil domain 2
mm39_v1_chrX_-_91059789_91059939	0.020586	Aire	ENSMUST00000099471.3|Mageb1|ENSMUSG00000062162.3|MAGE family member B1	ENSMUST00000072269.2|Mageb1|ENSMUSG00000062162.3|MAGE family member B1
mm39_v1_chr2_-_89969539_89969539	0.00167076	Aire	ENSMUST00000099755.5|Olfr32|ENSMUSG00000075066.8|olfactory receptor 32
