mm39_v1_chr1_-_39690642_39690642	1.46927	CAGUAAC	ENSMUST00000053355.6|Creg2|ENSMUSG00000050967.6|cellular repressor of E1A-stimulated genes 2
mm39_v1_chr2_+_71811526_71811631	1.173	CAGUAAC	ENSMUST00000090826.12|Rapgef4|ENSMUSG00000049044.17|Rap guanine nucleotide exchange factor (GEF) 4	ENSMUST00000102698.10|Rapgef4|ENSMUSG00000049044.17|Rap guanine nucleotide exchange factor (GEF) 4
mm39_v1_chr5_+_115567644_115567673	1.14763	CAGUAAC	ENSMUST00000150779.8|Msi1|ENSMUSG00000054256.12|musashi RNA-binding protein 1
mm39_v1_chr1_-_79417732_79417837	1.1006	CAGUAAC	ENSMUST00000185234.2|Scg2|ENSMUSG00000050711.8|secretogranin II	ENSMUST00000049972.6|Scg2|ENSMUSG00000050711.8|secretogranin II
mm39_v1_chr2_-_104240679_104240679	1.02926	CAGUAAC	ENSMUST00000136156.9|D430041D05Rik|ENSMUSG00000068373.16|RIKEN cDNA D430041D05 gene	ENSMUST00000141159.9|D430041D05Rik|ENSMUSG00000068373.16|RIKEN cDNA D430041D05 gene	ENSMUST00000089726.10|D430041D05Rik|ENSMUSG00000068373.16|RIKEN cDNA D430041D05 gene
mm39_v1_chr16_-_96971905_96971952	0.987672	CAGUAAC	ENSMUST00000056102.9|Dscam|ENSMUSG00000050272.11|DS cell adhesion molecule
mm39_v1_chr11_+_92990110_92990156	0.976148	CAGUAAC	ENSMUST00000107863.4|Car10|ENSMUSG00000056158.15|carbonic anhydrase 10
mm39_v1_chr13_-_112788890_112789009	0.950049	CAGUAAC	ENSMUST00000099166.10|Ddx4|ENSMUSG00000021758.15|DEAD box helicase 4
mm39_v1_chr7_+_99876515_99876606	0.915084	CAGUAAC	ENSMUST00000084935.11|Pgm2l1|ENSMUSG00000030729.18|phosphoglucomutase 2-like 1
mm39_v1_chrX_+_8758614_8758663	0.904049	CAGUAAC	ENSMUST00000064196.5|B630019K06Rik|ENSMUSG00000052364.5|RIKEN cDNA B630019K06 gene
mm39_v1_chr5_-_103247920_103247954	0.834134	CAGUAAC	ENSMUST00000112848.8|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10
mm39_v1_chr13_+_42862957_42863057	0.771586	CAGUAAC	ENSMUST00000066928.12|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1	ENSMUST00000148891.8|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1
mm39_v1_chr10_-_63926044_63926076	0.763182	CAGUAAC	ENSMUST00000105439.2|Lrrtm3|ENSMUSG00000042846.9|leucine rich repeat transmembrane neuronal 3
mm39_v1_chr15_-_89726063_89726140	0.702889	CAGUAAC	ENSMUST00000029441.4|Syt10|ENSMUSG00000063260.3|synaptotagmin X
mm39_v1_chr19_-_34856853_34856864	0.635856	CAGUAAC	ENSMUST00000036584.13|Pank1|ENSMUSG00000033610.17|pantothenate kinase 1
mm39_v1_chr14_-_60324265_60324374	0.633872	CAGUAAC	ENSMUST00000080368.13|Atp8a2|ENSMUSG00000021983.17|ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
mm39_v1_chr7_-_64806164_64806318	0.621957	CAGUAAC	ENSMUST00000148459.3|Fam189a1|ENSMUSG00000030518.18|family with sequence similarity 189, member A1	ENSMUST00000119118.8|Fam189a1|ENSMUSG00000030518.18|family with sequence similarity 189, member A1
mm39_v1_chr6_+_65929546_65929605	0.607936	CAGUAAC	ENSMUST00000043382.9|4930544G11Rik|ENSMUSG00000036463.9|RIKEN cDNA 4930544G11 gene
mm39_v1_chr3_+_107008867_107008883	0.605118	CAGUAAC	ENSMUST00000038695.6|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr5_-_106844685_106844707	0.568285	CAGUAAC	ENSMUST00000127434.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112696.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112698.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644
mm39_v1_chr18_-_75094323_75094339	0.566	CAGUAAC	ENSMUST00000066532.5|Lipg|ENSMUSG00000053846.6|lipase, endothelial
mm39_v1_chr19_+_58931847_58931873	0.560094	CAGUAAC	ENSMUST00000054280.10|Eno4|ENSMUSG00000048029.11|enolase 4	ENSMUST00000200910.4|Eno4|ENSMUSG00000048029.11|enolase 4
mm39_v1_chr14_+_103887644_103887679	0.559934	CAGUAAC	ENSMUST00000069443.14|Slain1|ENSMUSG00000055717.14|SLAIN motif family, member 1
mm39_v1_chr5_+_30437579_30437678	0.556457	CAGUAAC	ENSMUST00000145167.9|Selenoi|ENSMUSG00000075703.17|selenoprotein I
mm39_v1_chr12_-_70394074_70394134	0.545457	CAGUAAC	ENSMUST00000223160.2|Trim9|ENSMUSG00000021071.18|tripartite motif-containing 9	ENSMUST00000222316.2|Trim9|ENSMUSG00000021071.18|tripartite motif-containing 9	ENSMUST00000167755.3|Trim9|ENSMUSG00000021071.18|tripartite motif-containing 9	ENSMUST00000110520.10|Trim9|ENSMUSG00000021071.18|tripartite motif-containing 9	ENSMUST00000110522.10|Trim9|ENSMUSG00000021071.18|tripartite motif-containing 9	ENSMUST00000221041.2|Trim9|ENSMUSG00000021071.18|tripartite motif-containing 9	ENSMUST00000222603.3|Trim9|ENSMUSG00000021071.18|tripartite motif-containing 9
mm39_v1_chr12_+_40495951_40496015	0.542236	CAGUAAC	ENSMUST00000037488.8|Dock4|ENSMUSG00000035954.11|dedicator of cytokinesis 4
mm39_v1_chr16_-_90866032_90866081	0.529762	CAGUAAC	ENSMUST00000035689.8|4932438H23Rik|ENSMUSG00000039851.12|RIKEN cDNA 4932438H23 gene	ENSMUST00000114076.2|4932438H23Rik|ENSMUSG00000039851.12|RIKEN cDNA 4932438H23 gene
mm39_v1_chr15_+_80171435_80171453	0.528104	CAGUAAC	ENSMUST00000160424.8|Cacna1i|ENSMUSG00000022416.16|calcium channel, voltage-dependent, alpha 1I subunit
mm39_v1_chr3_+_136375839_136375948	0.492176	CAGUAAC	ENSMUST00000070198.14|Ppp3ca|ENSMUSG00000028161.18|protein phosphatase 3, catalytic subunit, alpha isoform
mm39_v1_chr6_-_92683136_92683277	0.486571	CAGUAAC	ENSMUST00000032093.12|Prickle2|ENSMUSG00000030020.14|prickle planar cell polarity protein 2
mm39_v1_chr5_+_35435663_35435663	0.479452	CAGUAAC	ENSMUST00000049545.7|Adra2c|ENSMUSG00000045318.7|adrenergic receptor, alpha 2c
mm39_v1_chr18_-_58343423_58343559	0.469243	CAGUAAC	ENSMUST00000025497.8|Fbn2|ENSMUSG00000024598.10|fibrillin 2
mm39_v1_chr1_-_156301821_156301901	0.461004	CAGUAAC	ENSMUST00000188027.2|Soat1|ENSMUSG00000026600.13|sterol O-acyltransferase 1	ENSMUST00000187507.7|Soat1|ENSMUSG00000026600.13|sterol O-acyltransferase 1	ENSMUST00000189661.7|Soat1|ENSMUSG00000026600.13|sterol O-acyltransferase 1
mm39_v1_chr5_-_74229021_74229099	0.453981	CAGUAAC	ENSMUST00000119154.8|Usp46|ENSMUSG00000054814.15|ubiquitin specific peptidase 46	ENSMUST00000068058.14|Usp46|ENSMUSG00000054814.15|ubiquitin specific peptidase 46
mm39_v1_chr9_-_81515865_81515892	0.441958	CAGUAAC	ENSMUST00000183482.2|Htr1b|ENSMUSG00000049511.6|5-hydroxytryptamine (serotonin) receptor 1B
mm39_v1_chr18_+_60659257_60659306	0.439131	CAGUAAC	ENSMUST00000223984.2|Dctn4|ENSMUSG00000024603.9|dynactin 4	ENSMUST00000025505.7|Dctn4|ENSMUSG00000024603.9|dynactin 4	ENSMUST00000223590.2|Dctn4|ENSMUSG00000024603.9|dynactin 4
mm39_v1_chr12_-_79239022_79239067	0.431931	CAGUAAC	ENSMUST00000161204.8|Rdh11|ENSMUSG00000066441.15|retinol dehydrogenase 11
mm39_v1_chr14_+_30673409_30673426	0.429912	CAGUAAC	ENSMUST00000050171.10|Nek4|ENSMUSG00000021918.11|NIMA (never in mitosis gene a)-related expressed kinase 4
mm39_v1_chrX_+_65692924_65693001	0.425991	CAGUAAC	ENSMUST00000166241.2|Slitrk2|ENSMUSG00000036790.6|SLIT and NTRK-like family, member 2
mm39_v1_chr13_-_94422337_94422409	0.423853	CAGUAAC	ENSMUST00000022197.15|Scamp1|ENSMUSG00000021687.15|secretory carrier membrane protein 1	ENSMUST00000152555.8|Scamp1|ENSMUSG00000021687.15|secretory carrier membrane protein 1
mm39_v1_chr2_-_73722874_73722900	0.417385	CAGUAAC	ENSMUST00000136958.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112010.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000128531.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112017.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr15_-_64184485_64184537	0.399096	CAGUAAC	ENSMUST00000177083.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1	ENSMUST00000177371.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1
mm39_v1_chr5_-_97540230_97540244	0.394851	CAGUAAC	ENSMUST00000060265.6|Naa11|ENSMUSG00000046000.6|N(alpha)-acetyltransferase 11, NatA catalytic subunit
mm39_v1_chr8_-_47805383_47805401	0.392598	CAGUAAC	ENSMUST00000110367.10|Stox2|ENSMUSG00000038143.17|storkhead box 2
mm39_v1_chr14_+_3575879_3575951	0.391805	CAGUAAC	ENSMUST00000150727.8|Ube2e2|ENSMUSG00000058317.13|ubiquitin-conjugating enzyme E2E 2
mm39_v1_chr5_-_108022900_108022973	0.390389	CAGUAAC	ENSMUST00000138111.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5	ENSMUST00000112642.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5
mm39_v1_chr3_+_55149947_55149976	0.367226	CAGUAAC	ENSMUST00000167204.8|Dclk1|ENSMUSG00000027797.16|doublecortin-like kinase 1	ENSMUST00000054237.14|Dclk1|ENSMUSG00000027797.16|doublecortin-like kinase 1
mm39_v1_chr13_+_83652352_83652374	0.36684	CAGUAAC	ENSMUST00000198916.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000200123.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000005722.14|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000163888.8|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr16_+_8331293_8331361	0.349469	CAGUAAC	ENSMUST00000065987.14|Abat|ENSMUSG00000057880.13|4-aminobutyrate aminotransferase	ENSMUST00000115838.8|Abat|ENSMUSG00000057880.13|4-aminobutyrate aminotransferase	ENSMUST00000115839.9|Abat|ENSMUSG00000057880.13|4-aminobutyrate aminotransferase
mm39_v1_chr9_-_44710480_44710604	0.343738	CAGUAAC	ENSMUST00000214833.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000213972.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000214431.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000213363.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000114705.9|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000002100.8|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25
mm39_v1_chr18_+_34354031_34354073	0.337963	CAGUAAC	ENSMUST00000115781.10|Apc|ENSMUSG00000005871.16|APC, WNT signaling pathway regulator	ENSMUST00000079362.13|Apc|ENSMUSG00000005871.16|APC, WNT signaling pathway regulator
mm39_v1_chr11_-_5492175_5492221	0.337011	CAGUAAC	ENSMUST00000020776.5|Ccdc117|ENSMUSG00000020482.5|coiled-coil domain containing 117
mm39_v1_chrX_-_20157966_20158078	0.317355	CAGUAAC	ENSMUST00000115393.3|Slc9a7|ENSMUSG00000037341.15|solute carrier family 9 (sodium/hydrogen exchanger), member 7	ENSMUST00000072451.11|Slc9a7|ENSMUSG00000037341.15|solute carrier family 9 (sodium/hydrogen exchanger), member 7
mm39_v1_chr16_-_3690243_3690275	0.312215	CAGUAAC	ENSMUST00000090522.5|Zfp597|ENSMUSG00000039789.8|zinc finger protein 597
mm39_v1_chr15_-_76406602_76406699	0.310648	CAGUAAC	ENSMUST00000096365.5|Scrt1|ENSMUSG00000048385.10|scratch family zinc finger 1
mm39_v1_chr15_+_12117899_12118008	0.306034	CAGUAAC	ENSMUST00000122941.8|Zfr|ENSMUSG00000022201.17|zinc finger RNA binding protein
mm39_v1_chr18_+_35695199_35695313	0.302989	CAGUAAC	ENSMUST00000236860.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000166793.10|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237780.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000236507.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000235960.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237061.2|Matr3|ENSMUSG00000037236.17|matrin 3
mm39_v1_chr4_-_149184259_149184333	0.293926	CAGUAAC	ENSMUST00000103217.11|Pex14|ENSMUSG00000028975.17|peroxisomal biogenesis factor 14
mm39_v1_chr11_+_31822211_31822263	0.293372	CAGUAAC	ENSMUST00000020543.13|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4	ENSMUST00000109412.9|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4
mm39_v1_chr13_+_46655324_46655360	0.289511	CAGUAAC	ENSMUST00000021802.16|Cap2|ENSMUSG00000021373.17|CAP, adenylate cyclase-associated protein, 2 (yeast)
mm39_v1_chr1_-_189902868_189902942	0.288804	CAGUAAC	ENSMUST00000177288.4|Prox1|ENSMUSG00000010175.14|prospero homeobox 1	ENSMUST00000175916.8|Prox1|ENSMUSG00000010175.14|prospero homeobox 1
mm39_v1_chr1_+_153775682_153775699	0.280355	CAGUAAC	ENSMUST00000086199.12|Glul|ENSMUSG00000026473.17|glutamate-ammonia ligase (glutamine synthetase)
mm39_v1_chrX_-_103024847_103024893	0.275971	CAGUAAC	ENSMUST00000121153.8|Rlim|ENSMUSG00000056537.12|ring finger protein, LIM domain interacting	ENSMUST00000070705.6|Rlim|ENSMUSG00000056537.12|ring finger protein, LIM domain interacting
mm39_v1_chr15_-_63932288_63932327	0.274193	CAGUAAC	ENSMUST00000063838.11|Cyrib|ENSMUSG00000022378.15|CYFIP related Rac1 interactor B	ENSMUST00000228908.2|Cyrib|ENSMUSG00000022378.15|CYFIP related Rac1 interactor B
mm39_v1_chr3_-_116456292_116456326	0.259507	CAGUAAC	ENSMUST00000029570.9|Mfsd14a|ENSMUSG00000089911.5|major facilitator superfamily domain containing 14A
mm39_v1_chrX_-_36166529_36166557	0.256834	CAGUAAC	ENSMUST00000057093.8|Nkrf|ENSMUSG00000044149.8|NF-kappaB repressing factor
mm39_v1_chr2_+_173918715_173918859	0.221682	CAGUAAC	ENSMUST00000087908.10|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000044638.13|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000156054.2|Stx16|ENSMUSG00000027522.16|syntaxin 16
mm39_v1_chr11_-_97635484_97635571	0.219257	CAGUAAC	ENSMUST00000018691.9|Pip4k2b|ENSMUSG00000018547.9|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm39_v1_chr9_-_121106209_121106282	0.219229	CAGUAAC	ENSMUST00000051479.13|Ulk4|ENSMUSG00000040936.16|unc-51-like kinase 4	ENSMUST00000171923.8|Ulk4|ENSMUSG00000040936.16|unc-51-like kinase 4
mm39_v1_chr2_-_57004933_57005050	0.216947	CAGUAAC	ENSMUST00000028166.9|Nr4a2|ENSMUSG00000026826.14|nuclear receptor subfamily 4, group A, member 2
mm39_v1_chr16_+_18631036_18631086	0.211161	CAGUAAC	ENSMUST00000005394.13|Ufd1|ENSMUSG00000005262.14|ubiquitin recognition factor in ER-associated degradation 1
mm39_v1_chr19_-_18978463_18978483	0.210827	CAGUAAC	ENSMUST00000040153.15|Rorb|ENSMUSG00000036192.16|RAR-related orphan receptor beta	ENSMUST00000112828.8|Rorb|ENSMUSG00000036192.16|RAR-related orphan receptor beta
mm39_v1_chr16_+_20470402_20470462	0.207382	CAGUAAC	ENSMUST00000007212.9|Psmd2|ENSMUSG00000006998.17|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	ENSMUST00000232629.2|Psmd2|ENSMUSG00000006998.17|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2
mm39_v1_chr2_-_25873189_25873304	0.195288	CAGUAAC	ENSMUST00000114167.9|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000091268.11|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000183461.8|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1
mm39_v1_chr10_+_40225272_40225385	0.194597	CAGUAAC	ENSMUST00000044672.11|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19	ENSMUST00000095743.4|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19
mm39_v1_chr18_+_10725532_10725564	0.191226	CAGUAAC	ENSMUST00000052838.11|Mib1|ENSMUSG00000024294.15|mindbomb E3 ubiquitin protein ligase 1
mm39_v1_chr7_-_67294943_67295021	0.187485	CAGUAAC	ENSMUST00000190276.7|Lrrc28|ENSMUSG00000030556.14|leucine rich repeat containing 28	ENSMUST00000032775.12|Lrrc28|ENSMUSG00000030556.14|leucine rich repeat containing 28	ENSMUST00000053950.10|Lrrc28|ENSMUSG00000030556.14|leucine rich repeat containing 28	ENSMUST00000189836.2|Lrrc28|ENSMUSG00000030556.14|leucine rich repeat containing 28
mm39_v1_chr7_+_82516491_82516604	0.179872	CAGUAAC	ENSMUST00000082237.7|Mex3b|ENSMUSG00000057706.8|mex3 RNA binding family member B
mm39_v1_chr10_+_52566616_52566651	0.169223	CAGUAAC	ENSMUST00000105473.3|Slc35f1|ENSMUSG00000038602.8|solute carrier family 35, member F1
mm39_v1_chr2_+_3285240_3285257	0.166283	CAGUAAC	ENSMUST00000081932.13|Nmt2|ENSMUSG00000026643.17|N-myristoyltransferase 2
mm39_v1_chr19_-_29625755_29625825	0.165602	CAGUAAC	ENSMUST00000159692.8|Ermp1|ENSMUSG00000046324.13|endoplasmic reticulum metallopeptidase 1
mm39_v1_chr5_+_101912939_101913014	0.163561	CAGUAAC	ENSMUST00000031273.9|Cds1|ENSMUSG00000029330.9|CDP-diacylglycerol synthase 1
mm39_v1_chr2_-_79287095_79287102	0.160898	CAGUAAC	ENSMUST00000041099.5|Neurod1|ENSMUSG00000034701.10|neurogenic differentiation 1
mm39_v1_chr12_+_85520652_85520672	0.160261	CAGUAAC	ENSMUST00000021674.7|Fos|ENSMUSG00000021250.14|FBJ osteosarcoma oncogene
mm39_v1_chr14_+_48358267_48358285	0.158961	CAGUAAC	ENSMUST00000073150.6|Peli2|ENSMUSG00000021846.10|pellino 2
mm39_v1_chr1_-_97589675_97589799	0.158689	CAGUAAC	ENSMUST00000053033.14|Macir|ENSMUSG00000044768.17|macrophage immunometabolism regulator	ENSMUST00000149927.2|Macir|ENSMUSG00000044768.17|macrophage immunometabolism regulator
mm39_v1_chr11_+_105069591_105069633	0.151953	CAGUAAC	ENSMUST00000106939.9|Tlk2|ENSMUSG00000020694.18|tousled-like kinase 2 (Arabidopsis)
mm39_v1_chr3_+_54600509_54600526	0.150617	CAGUAAC	ENSMUST00000170552.6|Supt20|ENSMUSG00000027751.14|SPT20 SAGA complex component
mm39_v1_chr7_-_130964469_130964488	0.137529	CAGUAAC	ENSMUST00000059438.11|2310057M21Rik|ENSMUSG00000040177.11|RIKEN cDNA 2310057M21 gene
mm39_v1_chr9_+_80072274_80072339	0.133078	CAGUAAC	ENSMUST00000035889.15|Myo6|ENSMUSG00000033577.19|myosin VI	ENSMUST00000113268.8|Myo6|ENSMUSG00000033577.19|myosin VI
mm39_v1_chr18_+_6765145_6765263	0.131602	CAGUAAC	ENSMUST00000234810.2|Rab18|ENSMUSG00000073639.7|RAB18, member RAS oncogene family	ENSMUST00000234626.2|Rab18|ENSMUSG00000073639.7|RAB18, member RAS oncogene family	ENSMUST00000097680.7|Rab18|ENSMUSG00000073639.7|RAB18, member RAS oncogene family
mm39_v1_chrX_+_12454031_12454085	0.128092	CAGUAAC	ENSMUST00000033313.3|Atp6ap2|ENSMUSG00000031007.3|ATPase, H+ transporting, lysosomal accessory protein 2
mm39_v1_chr8_+_109441276_109441276	0.12774	CAGUAAC	ENSMUST00000043896.10|Zfhx3|ENSMUSG00000038872.11|zinc finger homeobox 3
mm39_v1_chr12_-_46865709_46865720	0.12598	CAGUAAC	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr1_+_91178017_91178103	0.120379	CAGUAAC	ENSMUST00000059743.12|Ube2f|ENSMUSG00000034343.15|ubiquitin-conjugating enzyme E2F (putative)	ENSMUST00000178627.8|Ube2f|ENSMUSG00000034343.15|ubiquitin-conjugating enzyme E2F (putative)	ENSMUST00000171165.8|Ube2f|ENSMUSG00000034343.15|ubiquitin-conjugating enzyme E2F (putative)	ENSMUST00000191368.7|Ube2f|ENSMUSG00000034343.15|ubiquitin-conjugating enzyme E2F (putative)
mm39_v1_chr18_+_77152890_77152948	0.120259	CAGUAAC	ENSMUST00000114777.10|Pias2|ENSMUSG00000025423.17|protein inhibitor of activated STAT 2
mm39_v1_chr16_-_57051829_57051872	0.116833	CAGUAAC	ENSMUST00000023431.8|Tbc1d23|ENSMUSG00000022749.9|TBC1 domain family, member 23
mm39_v1_chr2_-_164285097_164285114	0.116238	CAGUAAC	ENSMUST00000017153.4|Sdc4|ENSMUSG00000017009.4|syndecan 4
mm39_v1_chr11_+_121150798_121150881	0.103816	CAGUAAC	ENSMUST00000106113.2|Foxk2|ENSMUSG00000039275.10|forkhead box K2
mm39_v1_chr16_+_17051423_17051528	0.103748	CAGUAAC	ENSMUST00000090190.14|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2	ENSMUST00000232426.2|Gm49573|ENSMUSG00000116743.2|predicted gene, 49573	ENSMUST00000232082.2|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2
mm39_v1_chrX_+_55655111_55655177	0.103611	CAGUAAC	ENSMUST00000144068.8|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6	ENSMUST00000077741.12|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6	ENSMUST00000114784.4|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm39_v1_chr10_-_31485180_31485180	0.102379	CAGUAAC	ENSMUST00000081989.8|Rnf217|ENSMUSG00000063760.10|ring finger protein 217
mm39_v1_chr11_+_78069477_78069522	0.0971443	CAGUAAC	ENSMUST00000092880.14|Tlcd1|ENSMUSG00000019437.18|TLC domain containing 1	ENSMUST00000127587.8|Tlcd1|ENSMUSG00000019437.18|TLC domain containing 1
mm39_v1_chr1_+_85992341_85992370	0.0873152	CAGUAAC	ENSMUST00000027432.9|Psmd1|ENSMUSG00000026229.18|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
mm39_v1_chr6_-_92191878_92191906	0.0872495	CAGUAAC	ENSMUST00000014694.11|Rbsn|ENSMUSG00000014550.15|rabenosyn, RAB effector
mm39_v1_chr1_+_58432021_58432057	0.0808767	CAGUAAC	ENSMUST00000050552.15|Bzw1|ENSMUSG00000051223.15|basic leucine zipper and W2 domains 1
mm39_v1_chr4_+_49632046_49632110	0.0802085	CAGUAAC	ENSMUST00000156314.8|Rnf20|ENSMUSG00000028309.15|ring finger protein 20	ENSMUST00000167496.8|Rnf20|ENSMUSG00000028309.15|ring finger protein 20	ENSMUST00000029989.11|Rnf20|ENSMUSG00000028309.15|ring finger protein 20	ENSMUST00000146547.2|Rnf20|ENSMUSG00000028309.15|ring finger protein 20
mm39_v1_chr18_+_82928959_82929005	0.077818	CAGUAAC	ENSMUST00000171238.8|Zfp516|ENSMUSG00000058881.14|zinc finger protein 516
mm39_v1_chr14_+_121148625_121148665	0.0772369	CAGUAAC	ENSMUST00000032898.9|Ipo5|ENSMUSG00000030662.11|importin 5
mm39_v1_chr11_-_74615496_74615530	0.0751914	CAGUAAC	ENSMUST00000021091.15|Pafah1b1|ENSMUSG00000020745.16|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm39_v1_chr6_+_8209216_8209265	0.0711292	CAGUAAC	ENSMUST00000040017.8|Mios|ENSMUSG00000042447.14|meiosis regulator for oocyte development
mm39_v1_chr9_-_56151334_56151382	0.0698533	CAGUAAC	ENSMUST00000188142.7|Peak1|ENSMUSG00000074305.10|pseudopodium-enriched atypical kinase 1
mm39_v1_chr4_-_108637979_108638000	0.0698319	CAGUAAC	ENSMUST00000106657.8|Zfyve9|ENSMUSG00000034557.15|zinc finger, FYVE domain containing 9
mm39_v1_chr8_-_79547707_79547769	0.0615251	CAGUAAC	ENSMUST00000130325.8|Lsm6|ENSMUSG00000031683.17|LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	ENSMUST00000051867.7|Lsm6|ENSMUSG00000031683.17|LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
mm39_v1_chr5_-_121974913_121974927	0.0601011	CAGUAAC	ENSMUST00000040308.14|Sh2b3|ENSMUSG00000042594.17|SH2B adaptor protein 3	ENSMUST00000086310.8|Sh2b3|ENSMUSG00000042594.17|SH2B adaptor protein 3
mm39_v1_chr9_-_107749982_107750028	0.0560185	CAGUAAC	ENSMUST00000183032.8|Rbm6|ENSMUSG00000032582.15|RNA binding motif protein 6	ENSMUST00000035201.13|Rbm6|ENSMUSG00000032582.15|RNA binding motif protein 6
mm39_v1_chr14_-_63482668_63482714	0.053953	CAGUAAC	ENSMUST00000118022.8|Gata4|ENSMUSG00000021944.16|GATA binding protein 4
mm39_v1_chr8_+_91555449_91555470	0.0523977	CAGUAAC	ENSMUST00000109614.9|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr8_-_61436249_61436353	0.0514745	CAGUAAC	ENSMUST00000004430.14|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3	ENSMUST00000110301.2|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3	ENSMUST00000093490.9|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3
mm39_v1_chr5_+_67464284_67464318	0.0498043	CAGUAAC	ENSMUST00000113676.6|Slc30a9|ENSMUSG00000029221.16|solute carrier family 30 (zinc transporter), member 9	ENSMUST00000162372.8|Slc30a9|ENSMUSG00000029221.16|solute carrier family 30 (zinc transporter), member 9
mm39_v1_chr13_+_81031512_81031543	0.0496131	CAGUAAC	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr8_-_96215401_96215480	0.0425916	CAGUAAC	ENSMUST00000212214.2|Csnk2a2|ENSMUSG00000046707.10|casein kinase 2, alpha prime polypeptide	ENSMUST00000056919.9|Csnk2a2|ENSMUSG00000046707.10|casein kinase 2, alpha prime polypeptide
mm39_v1_chr8_-_81466126_81466126	0.0411581	CAGUAAC	ENSMUST00000043359.9|Smarca5|ENSMUSG00000031715.15|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm39_v1_chr6_+_108760025_108760096	0.0377469	CAGUAAC	ENSMUST00000032196.9|Arl8b|ENSMUSG00000030105.9|ADP-ribosylation factor-like 8B
mm39_v1_chrX_+_84617624_84617756	0.0356101	CAGUAAC	ENSMUST00000048250.10|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3	ENSMUST00000137438.2|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3	ENSMUST00000146063.2|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm39_v1_chr5_+_129097133_129097336	0.0314224	CAGUAAC	ENSMUST00000031383.14|Ran|ENSMUSG00000029430.14|RAN, member RAS oncogene family	ENSMUST00000111343.2|Ran|ENSMUSG00000029430.14|RAN, member RAS oncogene family
mm39_v1_chr17_+_29251602_29251655	0.0314177	CAGUAAC	ENSMUST00000130216.3|Srsf3|ENSMUSG00000071172.14|serine and arginine-rich splicing factor 3
mm39_v1_chr8_-_103512274_103512408	0.0307154	CAGUAAC	ENSMUST00000075190.5|Cdh11|ENSMUSG00000031673.7|cadherin 11
mm39_v1_chr11_+_75623695_75623795	0.0260089	CAGUAAC	ENSMUST00000067664.10|Ywhae|ENSMUSG00000020849.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm39_v1_chr19_-_37184692_37184907	0.0244187	CAGUAAC	ENSMUST00000132580.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000079754.11|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000136286.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000126188.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000126781.2|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3
mm39_v1_chr3_-_63872189_63872208	0.022009	CAGUAAC	ENSMUST00000029402.15|Slc33a1|ENSMUSG00000027822.17|solute carrier family 33 (acetyl-CoA transporter), member 1
mm39_v1_chr16_-_55850027_55850102	0.0188891	CAGUAAC	ENSMUST00000122253.2|Pcnp|ENSMUSG00000071533.12|PEST proteolytic signal containing nuclear protein	ENSMUST00000114444.9|Pcnp|ENSMUSG00000071533.12|PEST proteolytic signal containing nuclear protein
mm39_v1_chr19_-_17814984_17815006	0.0169169	CAGUAAC	ENSMUST00000025618.16|Pcsk5|ENSMUSG00000024713.17|proprotein convertase subtilisin/kexin type 5	ENSMUST00000050715.10|Pcsk5|ENSMUSG00000024713.17|proprotein convertase subtilisin/kexin type 5
mm39_v1_chr12_+_80690985_80691023	0.0160739	CAGUAAC	ENSMUST00000219405.2|Slc39a9|ENSMUSG00000048833.10|solute carrier family 39 (zinc transporter), member 9	ENSMUST00000085245.7|Slc39a9|ENSMUSG00000048833.10|solute carrier family 39 (zinc transporter), member 9
mm39_v1_chr16_+_43993599_43993760	0.0140526	CAGUAAC	ENSMUST00000119746.8|Usf3|ENSMUSG00000068284.15|upstream transcription factor family member 3	ENSMUST00000088356.10|Usf3|ENSMUSG00000068284.15|upstream transcription factor family member 3	ENSMUST00000169582.3|Usf3|ENSMUSG00000068284.15|upstream transcription factor family member 3
mm39_v1_chr4_-_148711453_148711492	0.00293997	CAGUAAC	ENSMUST00000165113.8|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000172073.8|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000105702.9|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000084125.10|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein
mm39_v1_chr2_+_166747946_166748019	0.00284204	CAGUAAC	ENSMUST00000002790.14|Cse1l|ENSMUSG00000002718.15|chromosome segregation 1-like (S. cerevisiae)
mm39_v1_chr9_+_68561042_68561068	0.00279695	CAGUAAC	ENSMUST00000034766.14|Rora|ENSMUSG00000032238.18|RAR-related orphan receptor alpha
mm39_v1_chr6_-_83418656_83418666	0.00261258	CAGUAAC	ENSMUST00000089622.11|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
