mm39_v1_chr7_+_86895851_86895877	5.43215	CAGUAGU	ENSMUST00000032781.14|Nox4|ENSMUSG00000030562.18|NADPH oxidase 4
mm39_v1_chr18_-_52662917_52662989	4.41242	CAGUAGU	ENSMUST00000171470.8|Lox|ENSMUSG00000024529.15|lysyl oxidase
mm39_v1_chr5_+_75312939_75312967	4.29122	CAGUAGU	ENSMUST00000202681.4|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide	ENSMUST00000000476.15|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide
mm39_v1_chr6_-_52203146_52203176	4.16005	CAGUAGU	ENSMUST00000114425.3|Hoxa9|ENSMUSG00000038227.16|homeobox A9
mm39_v1_chr11_+_115714853_115714923	3.75113	CAGUAGU	ENSMUST00000103032.11|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component	ENSMUST00000133250.8|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component	ENSMUST00000177736.8|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component
mm39_v1_chr11_-_31320065_31320081	3.73844	CAGUAGU	ENSMUST00000020546.3|Stc2|ENSMUSG00000020303.3|stanniocalcin 2
mm39_v1_chr19_+_27194757_27194825	3.26152	CAGUAGU	ENSMUST00000047645.13|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor	ENSMUST00000167487.8|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor
mm39_v1_chr2_-_12306722_12306734	3.22442	CAGUAGU	ENSMUST00000028106.11|Itga8|ENSMUSG00000026768.11|integrin alpha 8
mm39_v1_chr13_-_115238427_115238520	3.10962	CAGUAGU	ENSMUST00000224997.2|Gm49395|ENSMUSG00000114470.2|predicted gene, 49395	ENSMUST00000061673.9|Itga1|ENSMUSG00000042284.11|integrin alpha 1
mm39_v1_chr16_+_58228806_58228886	3.06323	CAGUAGU	ENSMUST00000046663.8|Dcbld2|ENSMUSG00000035107.14|discoidin, CUB and LCCL domain containing 2
mm39_v1_chr7_+_112278520_112278532	3.01843	CAGUAGU	ENSMUST00000084705.13|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239442.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239404.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000059768.18|Tead1|ENSMUSG00000055320.19|TEA domain family member 1
mm39_v1_chr15_-_66841465_66841496	2.77229	CAGUAGU	ENSMUST00000170903.8|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000166420.8|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000005256.14|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000164070.2|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1
mm39_v1_chr5_+_21577640_21577711	2.75624	CAGUAGU	ENSMUST00000035799.6|Fgl2|ENSMUSG00000039899.6|fibrinogen-like protein 2
mm39_v1_chr2_+_125876566_125876600	2.74033	CAGUAGU	ENSMUST00000064794.14|Fgf7|ENSMUSG00000027208.15|fibroblast growth factor 7
mm39_v1_chr10_+_108167973_108168020	2.69319	CAGUAGU	ENSMUST00000095313.5|Pawr|ENSMUSG00000035873.9|PRKC, apoptosis, WT1, regulator
mm39_v1_chr6_-_148847854_148847995	2.63838	CAGUAGU	ENSMUST00000139355.8|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000146457.2|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000054080.15|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor
mm39_v1_chr17_-_43187280_43187368	2.61318	CAGUAGU	ENSMUST00000024709.9|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein	ENSMUST00000233476.2|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein
mm39_v1_chr4_+_97665843_97665870	2.58499	CAGUAGU	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr11_+_44508137_44508169	2.45942	CAGUAGU	ENSMUST00000109268.2|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000101326.10|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000081265.12|Ebf1|ENSMUSG00000057098.15|early B cell factor 1
mm39_v1_chr5_+_150876072_150876179	2.45921	CAGUAGU	ENSMUST00000078856.8|Kl|ENSMUSG00000058488.8|klotho
mm39_v1_chr6_+_17463748_17463808	2.39858	CAGUAGU	ENSMUST00000115443.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr2_-_102731691_102732010	2.34833	CAGUAGU	ENSMUST00000111192.3|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000111190.9|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000111198.9|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000111191.9|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000060516.14|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000099673.9|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000005218.15|Cd44|ENSMUSG00000005087.18|CD44 antigen	ENSMUST00000111194.8|Cd44|ENSMUSG00000005087.18|CD44 antigen
mm39_v1_chr9_-_77452152_77452196	2.26391	CAGUAGU	ENSMUST00000183873.8|Lrrc1|ENSMUSG00000032352.17|leucine rich repeat containing 1
mm39_v1_chr9_+_118335294_118335357	2.21732	CAGUAGU	ENSMUST00000084820.6|Golga4|ENSMUSG00000038708.11|golgi autoantigen, golgin subfamily a, 4
mm39_v1_chr9_-_56068282_56068360	2.14784	CAGUAGU	ENSMUST00000034876.10|Tspan3|ENSMUSG00000032324.12|tetraspanin 3
mm39_v1_chr1_-_79836344_79836413	2.14511	CAGUAGU	ENSMUST00000027467.11|Serpine2|ENSMUSG00000026249.11|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm39_v1_chr11_-_76737794_76737871	2.12244	CAGUAGU	ENSMUST00000021201.6|Cpd|ENSMUSG00000020841.6|carboxypeptidase D
mm39_v1_chr12_+_34007645_34007670	2.10968	CAGUAGU	ENSMUST00000049089.7|Twist1|ENSMUSG00000035799.7|twist basic helix-loop-helix transcription factor 1
mm39_v1_chr12_+_33003882_33003890	2.09504	CAGUAGU	ENSMUST00000076698.13|Sypl|ENSMUSG00000020570.16|synaptophysin-like protein
mm39_v1_chr2_+_71617266_71617322	2.06031	CAGUAGU	ENSMUST00000112101.8|Itga6|ENSMUSG00000027111.17|integrin alpha 6	ENSMUST00000028522.10|Itga6|ENSMUSG00000027111.17|integrin alpha 6
mm39_v1_chr11_+_94455865_94455882	2.03346	CAGUAGU	ENSMUST00000040418.9|Chad|ENSMUSG00000039084.9|chondroadherin
mm39_v1_chr4_-_25800083_25800146	1.98443	CAGUAGU	ENSMUST00000084770.5|Fut9|ENSMUSG00000055373.9|fucosyltransferase 9
mm39_v1_chr10_+_56253418_56253434	1.91989	CAGUAGU	ENSMUST00000068581.9|Gja1|ENSMUSG00000050953.11|gap junction protein, alpha 1	ENSMUST00000217789.2|Gja1|ENSMUSG00000050953.11|gap junction protein, alpha 1
mm39_v1_chrX_+_105964224_105964239	1.90594	CAGUAGU	ENSMUST00000060576.8|Lpar4|ENSMUSG00000049929.8|lysophosphatidic acid receptor 4
mm39_v1_chr7_-_80453033_80453164	1.77289	CAGUAGU	ENSMUST00000167377.3|Iqgap1|ENSMUSG00000030536.11|IQ motif containing GTPase activating protein 1
mm39_v1_chr14_+_19801333_19801360	1.73119	CAGUAGU	ENSMUST00000022340.5|Nid2|ENSMUSG00000021806.5|nidogen 2
mm39_v1_chr2_+_4722956_4723017	1.70031	CAGUAGU	ENSMUST00000056914.7|Bend7|ENSMUSG00000048186.15|BEN domain containing 7
mm39_v1_chr9_+_72569628_72569697	1.67013	CAGUAGU	ENSMUST00000034740.15|Nedd4|ENSMUSG00000032216.16|neural precursor cell expressed, developmentally down-regulated 4
mm39_v1_chr3_-_102111892_102112009	1.65247	CAGUAGU	ENSMUST00000029453.13|Vangl1|ENSMUSG00000027860.16|VANGL planar cell polarity 1
mm39_v1_chr9_-_79625800_79625854	1.63011	CAGUAGU	ENSMUST00000071750.13|Col12a1|ENSMUSG00000032332.18|collagen, type XII, alpha 1
mm39_v1_chr4_-_151142351_151142444	1.62806	CAGUAGU	ENSMUST00000030797.4|Vamp3|ENSMUSG00000028955.4|vesicle-associated membrane protein 3
mm39_v1_chr11_+_59197746_59197761	1.55378	CAGUAGU	ENSMUST00000000128.10|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A	ENSMUST00000108783.4|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A
mm39_v1_chr2_-_140513382_140513399	1.54694	CAGUAGU	ENSMUST00000110057.3|Flrt3|ENSMUSG00000051379.13|fibronectin leucine rich transmembrane protein 3
mm39_v1_chr4_-_118148537_118148602	1.53658	CAGUAGU	ENSMUST00000049074.13|Ptprf|ENSMUSG00000033295.15|protein tyrosine phosphatase, receptor type, F
mm39_v1_chr14_-_110992533_110992584	1.4888	CAGUAGU	ENSMUST00000078386.4|Slitrk6|ENSMUSG00000045871.6|SLIT and NTRK-like family, member 6
mm39_v1_chr2_+_153583194_153583214	1.48351	CAGUAGU	ENSMUST00000028981.9|Mapre1|ENSMUSG00000027479.15|microtubule-associated protein, RP/EB family, member 1
mm39_v1_chr10_+_17598961_17598990	1.40961	CAGUAGU	ENSMUST00000038107.9|Cited2|ENSMUSG00000039910.11|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	ENSMUST00000219558.2|Cited2|ENSMUSG00000039910.11|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	ENSMUST00000218370.2|Cited2|ENSMUSG00000039910.11|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm39_v1_chr10_-_20600797_20600824	1.37955	CAGUAGU	ENSMUST00000020165.14|Pde7b|ENSMUSG00000019990.16|phosphodiesterase 7B
mm39_v1_chr4_-_131565542_131565603	1.35866	CAGUAGU	ENSMUST00000030741.9|Ptpru|ENSMUSG00000028909.18|protein tyrosine phosphatase, receptor type, U	ENSMUST00000105987.9|Ptpru|ENSMUSG00000028909.18|protein tyrosine phosphatase, receptor type, U
mm39_v1_chr7_+_130179063_130179214	1.30283	CAGUAGU	ENSMUST00000207918.2|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000215492.2|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000084513.12|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000059145.14|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2
mm39_v1_chr13_-_3968157_3968220	1.29761	CAGUAGU	ENSMUST00000223258.2|Net1|ENSMUSG00000021215.16|neuroepithelial cell transforming gene 1	ENSMUST00000091853.12|Net1|ENSMUSG00000021215.16|neuroepithelial cell transforming gene 1
mm39_v1_chr16_+_42727926_42728047	1.28849	CAGUAGU	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chrX_-_165992311_165992475	1.27977	CAGUAGU	ENSMUST00000112172.4|Tmsb4x|ENSMUSG00000049775.17|thymosin, beta 4, X chromosome
mm39_v1_chr19_+_44282113_44282113	1.26224	CAGUAGU	ENSMUST00000026221.7|Scd2|ENSMUSG00000025203.7|stearoyl-Coenzyme A desaturase 2
mm39_v1_chr9_-_43017249_43017322	1.24791	CAGUAGU	ENSMUST00000165665.9|Arhgef12|ENSMUSG00000059495.15|Rho guanine nucleotide exchange factor (GEF) 12
mm39_v1_chr3_+_60408600_60408663	1.21493	CAGUAGU	ENSMUST00000099087.8|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr2_-_169973076_169973140	1.11263	CAGUAGU	ENSMUST00000063710.13|Zfp217|ENSMUSG00000052056.15|zinc finger protein 217
mm39_v1_chr3_-_116217579_116217681	1.08539	CAGUAGU	ENSMUST00000106491.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A	ENSMUST00000090464.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A
mm39_v1_chr17_+_78507669_78507687	1.07727	CAGUAGU	ENSMUST00000112498.3|Crim1|ENSMUSG00000024074.9|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm39_v1_chr5_+_13449276_13449350	1.06886	CAGUAGU	ENSMUST00000030714.9|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	ENSMUST00000141968.2|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm39_v1_chr18_+_74575567_74575608	1.06595	CAGUAGU	ENSMUST00000074157.13|Myo5b|ENSMUSG00000025885.19|myosin VB
mm39_v1_chr3_-_75864195_75864266	1.01623	CAGUAGU	ENSMUST00000038563.14|Golim4|ENSMUSG00000034109.16|golgi integral membrane protein 4	ENSMUST00000167078.8|Golim4|ENSMUSG00000034109.16|golgi integral membrane protein 4	ENSMUST00000117242.8|Golim4|ENSMUSG00000034109.16|golgi integral membrane protein 4
mm39_v1_chr3_-_19365431_19365486	1.00275	CAGUAGU	ENSMUST00000099195.10|Pde7a|ENSMUSG00000069094.13|phosphodiesterase 7A
mm39_v1_chr12_-_54909568_54909706	0.971599	CAGUAGU	ENSMUST00000078124.8|Cfl2|ENSMUSG00000062929.9|cofilin 2, muscle
mm39_v1_chr6_-_120015608_120015660	0.944682	CAGUAGU	ENSMUST00000177761.8|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000088644.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000060043.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chr14_+_54491637_54491704	0.935627	CAGUAGU	ENSMUST00000180359.8|Abhd4|ENSMUSG00000040997.15|abhydrolase domain containing 4	ENSMUST00000199338.2|Abhd4|ENSMUSG00000040997.15|abhydrolase domain containing 4
mm39_v1_chr4_-_3938352_3938401	0.923907	CAGUAGU	ENSMUST00000003369.10|Plag1|ENSMUSG00000003282.10|pleiomorphic adenoma gene 1
mm39_v1_chr8_-_112603292_112603382	0.854991	CAGUAGU	ENSMUST00000034431.3|Tmem170|ENSMUSG00000031953.3|transmembrane protein 170
mm39_v1_chr14_-_40688764_40688834	0.853446	CAGUAGU	ENSMUST00000047652.6|Tspan14|ENSMUSG00000037824.7|tetraspanin 14
mm39_v1_chr9_-_31123083_31123120	0.842412	CAGUAGU	ENSMUST00000217641.2|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000072634.15|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000079758.9|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000213254.2|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2
mm39_v1_chr16_-_92622972_92623037	0.822331	CAGUAGU	ENSMUST00000023673.14|Runx1|ENSMUSG00000022952.18|runt related transcription factor 1
mm39_v1_chr10_-_100323122_100323230	0.812747	CAGUAGU	ENSMUST00000128009.2|Tmtc3|ENSMUSG00000036676.15|transmembrane and tetratricopeptide repeat containing 3	ENSMUST00000134477.2|Tmtc3|ENSMUSG00000036676.15|transmembrane and tetratricopeptide repeat containing 3	ENSMUST00000099318.10|Tmtc3|ENSMUSG00000036676.15|transmembrane and tetratricopeptide repeat containing 3	ENSMUST00000058154.15|Tmtc3|ENSMUSG00000036676.15|transmembrane and tetratricopeptide repeat containing 3
mm39_v1_chr2_-_115896279_115896334	0.803491	CAGUAGU	ENSMUST00000110907.8|Meis2|ENSMUSG00000027210.21|Meis homeobox 2	ENSMUST00000110908.9|Meis2|ENSMUSG00000027210.21|Meis homeobox 2
mm39_v1_chr13_+_108452866_108452892	0.795455	CAGUAGU	ENSMUST00000051594.12|Depdc1b|ENSMUSG00000021697.13|DEP domain containing 1B
mm39_v1_chr4_+_101276474_101276547	0.786336	CAGUAGU	ENSMUST00000102780.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4	ENSMUST00000106946.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4	ENSMUST00000106945.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4
mm39_v1_chr12_+_79075924_79076002	0.782354	CAGUAGU	ENSMUST00000039928.7|Plekhh1|ENSMUSG00000060716.8|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm39_v1_chr12_+_3857001_3857064	0.762592	CAGUAGU	ENSMUST00000020991.15|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A	ENSMUST00000172509.8|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A
mm39_v1_chr4_-_154721288_154721330	0.752751	CAGUAGU	ENSMUST00000030902.13|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105637.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000070313.14|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105636.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105638.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000097759.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000124771.2|Prdm16|ENSMUSG00000039410.17|PR domain containing 16
mm39_v1_chr19_+_53128861_53128880	0.739076	CAGUAGU	ENSMUST00000111741.10|Add3|ENSMUSG00000025026.16|adducin 3 (gamma)
mm39_v1_chr1_-_54965470_54965561	0.713673	CAGUAGU	ENSMUST00000179030.8|Ankrd44|ENSMUSG00000052331.15|ankyrin repeat domain 44	ENSMUST00000044359.16|Ankrd44|ENSMUSG00000052331.15|ankyrin repeat domain 44
mm39_v1_chr10_+_19810037_19810272	0.677216	CAGUAGU	ENSMUST00000095806.10|Map3k5|ENSMUSG00000071369.12|mitogen-activated protein kinase kinase kinase 5	ENSMUST00000120259.8|Map3k5|ENSMUSG00000071369.12|mitogen-activated protein kinase kinase kinase 5
mm39_v1_chr11_+_97554192_97554240	0.664305	CAGUAGU	ENSMUST00000044730.12|Mllt6|ENSMUSG00000038437.12|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6
mm39_v1_chr2_+_59442378_59442453	0.664073	CAGUAGU	ENSMUST00000112568.8|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	ENSMUST00000037526.11|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm39_v1_chr3_+_157653051_157653148	0.654471	CAGUAGU	ENSMUST00000164582.4|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c	ENSMUST00000040787.13|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c
mm39_v1_chr6_-_5298455_5298476	0.654071	CAGUAGU	ENSMUST00000057792.9|Pon2|ENSMUSG00000032667.18|paraoxonase 2
mm39_v1_chr1_+_151631088_151631148	0.643412	CAGUAGU	ENSMUST00000188145.7|Edem3|ENSMUSG00000043019.13|ER degradation enhancer, mannosidase alpha-like 3	ENSMUST00000059498.12|Edem3|ENSMUSG00000043019.13|ER degradation enhancer, mannosidase alpha-like 3
mm39_v1_chr3_+_122213420_122213436	0.604997	CAGUAGU	ENSMUST00000029766.9|Bcar3|ENSMUSG00000028121.9|breast cancer anti-estrogen resistance 3
mm39_v1_chr12_-_119202527_119202599	0.5821	CAGUAGU	ENSMUST00000026360.9|Itgb8|ENSMUSG00000025321.15|integrin beta 8
mm39_v1_chr16_-_50252703_50252772	0.561723	CAGUAGU	ENSMUST00000066037.13|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089399.11|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089404.10|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000138166.8|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing
mm39_v1_chr14_-_36690726_36690751	0.552778	CAGUAGU	ENSMUST00000090024.11|Ccser2|ENSMUSG00000058690.15|coiled-coil serine rich 2
mm39_v1_chr9_+_75682637_75682661	0.544487	CAGUAGU	ENSMUST00000012281.8|Bmp5|ENSMUSG00000032179.8|bone morphogenetic protein 5
mm39_v1_chr5_-_148336711_148336722	0.542644	CAGUAGU	ENSMUST00000048116.15|Slc7a1|ENSMUSG00000041313.15|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
mm39_v1_chr4_+_53713998_53714199	0.540615	CAGUAGU	ENSMUST00000128667.8|Fktn|ENSMUSG00000028414.18|fukutin	ENSMUST00000221657.2|Fktn|ENSMUSG00000028414.18|fukutin
mm39_v1_chr3_+_9315662_9315662	0.536576	CAGUAGU	ENSMUST00000155203.2|Zbtb10|ENSMUSG00000069114.9|zinc finger and BTB domain containing 10
mm39_v1_chr14_-_67309866_67309925	0.529159	CAGUAGU	ENSMUST00000225380.2|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha	ENSMUST00000089230.7|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha
mm39_v1_chr12_-_46865709_46865720	0.528266	CAGUAGU	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr6_+_29348068_29348123	0.516928	CAGUAGU	ENSMUST00000173216.8|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000173694.5|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000172974.8|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000031779.17|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000090481.14|Calu|ENSMUSG00000029767.17|calumenin
mm39_v1_chr1_-_95595280_95595323	0.501795	CAGUAGU	ENSMUST00000043336.11|St8sia4|ENSMUSG00000040710.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm39_v1_chr3_-_108322868_108322868	0.493579	CAGUAGU	ENSMUST00000090558.10|Celsr2|ENSMUSG00000068740.14|cadherin, EGF LAG seven-pass G-type receptor 2
mm39_v1_chr6_-_30304512_30304569	0.481494	CAGUAGU	ENSMUST00000094543.3|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H	ENSMUST00000102993.10|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H
mm39_v1_chr13_-_101904662_101904725	0.471763	CAGUAGU	ENSMUST00000055518.13|Pik3r1|ENSMUSG00000041417.16|phosphoinositide-3-kinase regulatory subunit 1
mm39_v1_chr18_+_61688329_61688361	0.451131	CAGUAGU	ENSMUST00000165123.8|Csnk1a1|ENSMUSG00000024576.15|casein kinase 1, alpha 1
mm39_v1_chr16_+_13981180_13981216	0.44898	CAGUAGU	ENSMUST00000115795.9|Nde1|ENSMUSG00000022678.17|nudE neurodevelopment protein 1
mm39_v1_chr19_+_41471067_41471128	0.4285	CAGUAGU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr9_-_99022107_99022186	0.426598	CAGUAGU	ENSMUST00000035037.14|Pik3cb|ENSMUSG00000032462.15|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta
mm39_v1_chr15_+_57558048_57558089	0.402904	CAGUAGU	ENSMUST00000096430.11|Zhx2|ENSMUSG00000071757.11|zinc fingers and homeoboxes 2
mm39_v1_chrX_+_104807868_104807885	0.386587	CAGUAGU	ENSMUST00000033581.4|Fgf16|ENSMUSG00000031230.4|fibroblast growth factor 16
mm39_v1_chr11_+_83741657_83741681	0.381105	CAGUAGU	ENSMUST00000021016.10|Hnf1b|ENSMUSG00000020679.12|HNF1 homeobox B
mm39_v1_chr14_+_26959975_26960003	0.380466	CAGUAGU	ENSMUST00000049206.6|Arhgef3|ENSMUSG00000021895.11|Rho guanine nucleotide exchange factor (GEF) 3
mm39_v1_chr2_-_104324745_104324809	0.379682	CAGUAGU	ENSMUST00000028600.14|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr8_+_106587212_106587240	0.369354	CAGUAGU	ENSMUST00000008594.9|Nutf2|ENSMUSG00000008450.9|nuclear transport factor 2
mm39_v1_chr9_+_70586232_70586292	0.369006	CAGUAGU	ENSMUST00000067880.13|Adam10|ENSMUSG00000054693.15|a disintegrin and metallopeptidase domain 10
mm39_v1_chr2_-_63928339_63928367	0.34032	CAGUAGU	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr11_+_32592707_32592875	0.302731	CAGUAGU	ENSMUST00000109366.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000093205.13|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000076383.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11
mm39_v1_chr8_-_80784619_80784646	0.297294	CAGUAGU	ENSMUST00000079038.4|Hhip|ENSMUSG00000064325.5|Hedgehog-interacting protein
mm39_v1_chr11_+_29323618_29323777	0.288303	CAGUAGU	ENSMUST00000040182.13|Ccdc88a|ENSMUSG00000032740.18|coiled coil domain containing 88A	ENSMUST00000109477.2|Ccdc88a|ENSMUSG00000032740.18|coiled coil domain containing 88A
mm39_v1_chr4_-_57301791_57301837	0.274635	CAGUAGU	ENSMUST00000075637.11|Ptpn3|ENSMUSG00000038764.15|protein tyrosine phosphatase, non-receptor type 3
mm39_v1_chrX_+_135950334_135950415	0.269434	CAGUAGU	ENSMUST00000047852.8|Fam199x|ENSMUSG00000042595.8|family with sequence similarity 199, X-linked
mm39_v1_chr16_+_10884156_10884247	0.263943	CAGUAGU	ENSMUST00000089011.6|Snn|ENSMUSG00000037972.8|stannin
mm39_v1_chr1_+_191638854_191638879	0.254154	CAGUAGU	ENSMUST00000044954.7|Slc30a1|ENSMUSG00000037434.8|solute carrier family 30 (zinc transporter), member 1
mm39_v1_chr5_+_138083345_138083410	0.253749	CAGUAGU	ENSMUST00000019660.11|Zkscan1|ENSMUSG00000029729.13|zinc finger with KRAB and SCAN domains 1	ENSMUST00000066617.12|Zkscan1|ENSMUSG00000029729.13|zinc finger with KRAB and SCAN domains 1	ENSMUST00000110963.8|Zkscan1|ENSMUSG00000029729.13|zinc finger with KRAB and SCAN domains 1
mm39_v1_chr18_+_5591864_5591902	0.248733	CAGUAGU	ENSMUST00000025081.13|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1	ENSMUST00000159390.8|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1
mm39_v1_chr19_+_58931847_58931873	0.230084	CAGUAGU	ENSMUST00000054280.10|Eno4|ENSMUSG00000048029.11|enolase 4	ENSMUST00000200910.4|Eno4|ENSMUSG00000048029.11|enolase 4
mm39_v1_chr14_+_84680993_84681009	0.217677	CAGUAGU	ENSMUST00000071370.7|Pcdh17|ENSMUSG00000035566.8|protocadherin 17
mm39_v1_chr6_-_72876882_72876980	0.214471	CAGUAGU	ENSMUST00000068697.11|Kcmf1|ENSMUSG00000055239.11|potassium channel modulatory factor 1
mm39_v1_chr19_-_24533183_24533253	0.211158	CAGUAGU	ENSMUST00000112673.9|Pip5k1b|ENSMUSG00000024867.15|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	ENSMUST00000025800.15|Pip5k1b|ENSMUSG00000024867.15|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta
mm39_v1_chr14_-_73563212_73563276	0.210952	CAGUAGU	ENSMUST00000022701.7|Rb1|ENSMUSG00000022105.7|RB transcriptional corepressor 1
mm39_v1_chr10_+_88215079_88215164	0.191398	CAGUAGU	ENSMUST00000130301.8|Gnptab|ENSMUSG00000035311.17|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	ENSMUST00000020251.10|Gnptab|ENSMUSG00000035311.17|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm39_v1_chr8_+_55407872_55407889	0.18367	CAGUAGU	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr1_-_165830160_165830182	0.179639	CAGUAGU	ENSMUST00000111429.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000176800.2|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000177358.8|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr2_-_33777874_33777958	0.178018	CAGUAGU	ENSMUST00000041555.10|Mvb12b|ENSMUSG00000038740.10|multivesicular body subunit 12B
mm39_v1_chr11_+_3239165_3239281	0.166426	CAGUAGU	ENSMUST00000134089.8|Patz1|ENSMUSG00000020453.18|POZ (BTB) and AT hook containing zinc finger 1
mm39_v1_chr6_+_4903299_4903347	0.163989	CAGUAGU	ENSMUST00000035813.9|Ppp1r9a|ENSMUSG00000032827.16|protein phosphatase 1, regulatory subunit 9A
mm39_v1_chr1_-_71692320_71692359	0.160538	CAGUAGU	ENSMUST00000186940.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000188894.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000188674.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000189821.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000187938.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000190780.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000186736.2|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000055226.13|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000186129.7|Fn1|ENSMUSG00000026193.16|fibronectin 1
mm39_v1_chr13_+_113931038_113931108	0.156344	CAGUAGU	ENSMUST00000091201.7|Arl15|ENSMUSG00000042348.11|ADP-ribosylation factor-like 15
mm39_v1_chr2_+_156681927_156681952	0.153245	CAGUAGU	ENSMUST00000081335.13|Tgif2|ENSMUSG00000062175.14|TGFB-induced factor homeobox 2
mm39_v1_chr1_-_151965876_151965918	0.146054	CAGUAGU	ENSMUST00000044581.14|1700025G04Rik|ENSMUSG00000032666.17|RIKEN cDNA 1700025G04 gene
mm39_v1_chr17_-_87573294_87573363	0.135752	CAGUAGU	ENSMUST00000145895.8|Mcfd2|ENSMUSG00000024150.13|multiple coagulation factor deficiency 2	ENSMUST00000129616.8|Mcfd2|ENSMUSG00000024150.13|multiple coagulation factor deficiency 2	ENSMUST00000155904.2|Mcfd2|ENSMUSG00000024150.13|multiple coagulation factor deficiency 2	ENSMUST00000151155.8|Mcfd2|ENSMUSG00000024150.13|multiple coagulation factor deficiency 2	ENSMUST00000144236.9|Mcfd2|ENSMUSG00000024150.13|multiple coagulation factor deficiency 2	ENSMUST00000024963.11|Mcfd2|ENSMUSG00000024150.13|multiple coagulation factor deficiency 2
mm39_v1_chr2_+_112209548_112209598	0.121377	CAGUAGU	ENSMUST00000028552.4|Katnbl1|ENSMUSG00000027132.4|katanin p80 subunit B like 1
mm39_v1_chr4_+_148533062_148533094	0.114412	CAGUAGU	ENSMUST00000103221.10|Mtor|ENSMUSG00000028991.16|mechanistic target of rapamycin kinase	ENSMUST00000057580.8|Mtor|ENSMUSG00000028991.16|mechanistic target of rapamycin kinase
mm39_v1_chr3_+_151916059_151916102	0.112666	CAGUAGU	ENSMUST00000166984.8|Fubp1|ENSMUSG00000028034.16|far upstream element (FUSE) binding protein 1
mm39_v1_chr2_-_94268426_94268506	0.111905	CAGUAGU	ENSMUST00000028617.7|Api5|ENSMUSG00000027193.13|apoptosis inhibitor 5
mm39_v1_chr16_-_22084700_22084755	0.110911	CAGUAGU	ENSMUST00000161286.8|Tra2b|ENSMUSG00000022858.17|transformer 2 beta
mm39_v1_chr1_-_105284383_105284402	0.0770709	CAGUAGU	ENSMUST00000058688.7|Rnf152|ENSMUSG00000047496.7|ring finger protein 152
mm39_v1_chr9_-_44792575_44792621	0.0601502	CAGUAGU	ENSMUST00000114689.8|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000002095.11|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000128768.3|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A
mm39_v1_chr13_+_14238361_14238407	0.0598813	CAGUAGU	ENSMUST00000129488.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110536.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110534.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000039538.15|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110533.2|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)
mm39_v1_chr18_+_36414122_36414204	0.0587968	CAGUAGU	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chr18_+_32296126_32296249	0.0518379	CAGUAGU	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chr17_+_28361115_28361167	0.0446398	CAGUAGU	ENSMUST00000043503.11|Scube3|ENSMUSG00000038677.15|signal peptide, CUB domain, EGF-like 3
mm39_v1_chr4_-_137084973_137085033	0.0434768	CAGUAGU	ENSMUST00000030417.10|Cdc42|ENSMUSG00000006699.18|cell division cycle 42	ENSMUST00000051477.13|Cdc42|ENSMUSG00000006699.18|cell division cycle 42
mm39_v1_chrX_+_18028814_18028897	0.0333911	CAGUAGU	ENSMUST00000044484.13|Kdm6a|ENSMUSG00000037369.18|lysine (K)-specific demethylase 6A	ENSMUST00000052368.9|Kdm6a|ENSMUSG00000037369.18|lysine (K)-specific demethylase 6A
mm39_v1_chr3_-_135129686_135129845	0.031894	CAGUAGU	ENSMUST00000029815.8|Cisd2|ENSMUSG00000028165.10|CDGSH iron sulfur domain 2
mm39_v1_chr6_+_140568366_140568389	0.0289225	CAGUAGU	ENSMUST00000032359.15|Aebp2|ENSMUSG00000030232.19|AE binding protein 2
mm39_v1_chr12_-_108241392_108241476	0.0252203	CAGUAGU	ENSMUST00000136175.3|Ccdc85c|ENSMUSG00000084883.3|coiled-coil domain containing 85C
mm39_v1_chr10_-_59787646_59787663	0.0132872	CAGUAGU	ENSMUST00000020308.5|Ddit4|ENSMUSG00000020108.5|DNA-damage-inducible transcript 4
mm39_v1_chr1_+_43137852_43137871	0.0128928	CAGUAGU	ENSMUST00000010434.8|AI597479|ENSMUSG00000010290.8|expressed sequence AI597479
mm39_v1_chr12_-_4527138_4527196	0.011105	CAGUAGU	ENSMUST00000085814.5|Ncoa1|ENSMUSG00000020647.11|nuclear receptor coactivator 1
