mm39_v1_chr7_+_24335969_24335989	2.32448	CAGUCCA	ENSMUST00000080718.6|Lypd3|ENSMUSG00000057454.6|Ly6/Plaur domain containing 3
mm39_v1_chr13_-_55979191_55979238	2.18696	CAGUCCA	ENSMUST00000021968.7|Pitx1|ENSMUSG00000021506.8|paired-like homeodomain transcription factor 1
mm39_v1_chr19_-_30152814_30152866	2.10786	CAGUCCA	ENSMUST00000025778.9|Gldc|ENSMUSG00000024827.11|glycine decarboxylase
mm39_v1_chr10_+_52566616_52566651	1.28491	CAGUCCA	ENSMUST00000105473.3|Slc35f1|ENSMUSG00000038602.8|solute carrier family 35, member F1
mm39_v1_chr17_+_29312737_29312755	1.20706	CAGUCCA	ENSMUST00000023829.8|Cdkn1a|ENSMUSG00000023067.15|cyclin-dependent kinase inhibitor 1A (P21)	ENSMUST00000233296.2|Cdkn1a|ENSMUSG00000023067.15|cyclin-dependent kinase inhibitor 1A (P21)
mm39_v1_chr4_-_133329479_133329479	1.06782	CAGUCCA	ENSMUST00000057311.4|Sfn|ENSMUSG00000047281.4|stratifin
mm39_v1_chr7_-_127529238_127529294	1.06125	CAGUCCA	ENSMUST00000032988.10|Prss8|ENSMUSG00000030800.11|protease, serine 8 (prostasin)	ENSMUST00000206124.2|Prss8|ENSMUSG00000030800.11|protease, serine 8 (prostasin)
mm39_v1_chr17_+_47747657_47747730	1.03627	CAGUCCA	ENSMUST00000150819.3|AI661453|ENSMUSG00000034382.15|expressed sequence AI661453
mm39_v1_chr14_-_60324265_60324374	0.983655	CAGUCCA	ENSMUST00000080368.13|Atp8a2|ENSMUSG00000021983.17|ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
mm39_v1_chr15_+_102927366_102927405	0.968535	CAGUCCA	ENSMUST00000165375.3|Hoxc4|ENSMUSG00000075394.5|homeobox C4
mm39_v1_chr4_-_122854966_122854986	0.934223	CAGUCCA	ENSMUST00000030408.12|Mfsd2a|ENSMUSG00000028655.12|major facilitator superfamily domain containing 2A	ENSMUST00000127047.2|Mfsd2a|ENSMUSG00000028655.12|major facilitator superfamily domain containing 2A
mm39_v1_chr9_+_32027335_32027432	0.879785	CAGUCCA	ENSMUST00000174641.8|Arhgap32|ENSMUSG00000041444.15|Rho GTPase activating protein 32
mm39_v1_chr10_-_127099183_127099237	0.859909	CAGUCCA	ENSMUST00000099172.5|Kif5a|ENSMUSG00000074657.6|kinesin family member 5A
mm39_v1_chr2_+_57127665_57127741	0.815356	CAGUCCA	ENSMUST00000169687.8|Gpd2|ENSMUSG00000026827.13|glycerol phosphate dehydrogenase 2, mitochondrial
mm39_v1_chr11_+_94102255_94102280	0.785746	CAGUCCA	ENSMUST00000041589.6|Tob1|ENSMUSG00000037573.6|transducer of ErbB-2.1
mm39_v1_chr4_+_138181616_138181643	0.656427	CAGUCCA	ENSMUST00000050918.4|Camk2n1|ENSMUSG00000046447.4|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm39_v1_chr6_+_14901343_14901363	0.592644	CAGUCCA	ENSMUST00000115477.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr10_+_69369590_69369603	0.589499	CAGUCCA	ENSMUST00000182884.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr12_-_108241392_108241476	0.552741	CAGUCCA	ENSMUST00000136175.3|Ccdc85c|ENSMUSG00000084883.3|coiled-coil domain containing 85C
mm39_v1_chr1_+_42734889_42734937	0.548923	CAGUCCA	ENSMUST00000054883.4|Pou3f3|ENSMUSG00000045515.5|POU domain, class 3, transcription factor 3
mm39_v1_chr17_-_23964807_23964807	0.52446	CAGUCCA	ENSMUST00000046525.10|Kremen2|ENSMUSG00000040680.10|kringle containing transmembrane protein 2
mm39_v1_chr1_+_20960819_20960841	0.508749	CAGUCCA	ENSMUST00000189400.7|Paqr8|ENSMUSG00000025931.16|progestin and adipoQ receptor family member VIII
mm39_v1_chr15_-_79389442_79389442	0.496046	CAGUCCA	ENSMUST00000057801.8|Kcnj4|ENSMUSG00000044216.8|potassium inwardly-rectifying channel, subfamily J, member 4
mm39_v1_chr7_+_130179063_130179214	0.494059	CAGUCCA	ENSMUST00000207918.2|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000215492.2|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000084513.12|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000059145.14|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2
mm39_v1_chr18_+_86729184_86729235	0.491296	CAGUCCA	ENSMUST00000068423.10|Cbln2|ENSMUSG00000024647.15|cerebellin 2 precursor protein
mm39_v1_chr6_+_134012602_134012683	0.490176	CAGUCCA	ENSMUST00000081028.13|Etv6|ENSMUSG00000030199.17|ets variant 6	ENSMUST00000111963.8|Etv6|ENSMUSG00000030199.17|ets variant 6
mm39_v1_chr5_+_128677863_128677912	0.486488	CAGUCCA	ENSMUST00000117102.4|Fzd10|ENSMUSG00000081683.6|frizzled class receptor 10
mm39_v1_chr6_+_86826470_86826577	0.485322	CAGUCCA	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chr10_-_90959853_90959921	0.448592	CAGUCCA	ENSMUST00000170810.8|Slc25a3|ENSMUSG00000061904.13|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	ENSMUST00000076694.13|Slc25a3|ENSMUSG00000061904.13|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm39_v1_chrX_+_92330102_92330128	0.433643	CAGUCCA	ENSMUST00000046565.13|Arx|ENSMUSG00000035277.16|aristaless related homeobox	ENSMUST00000113947.6|Arx|ENSMUSG00000035277.16|aristaless related homeobox
mm39_v1_chr12_-_11486544_11486655	0.431517	CAGUCCA	ENSMUST00000072299.7|Vsnl1|ENSMUSG00000054459.9|visinin-like 1
mm39_v1_chr15_+_102058936_102059012	0.424586	CAGUCCA	ENSMUST00000023806.14|Soat2|ENSMUSG00000023045.14|sterol O-acyltransferase 2
mm39_v1_chr7_-_70010341_70010494	0.422207	CAGUCCA	ENSMUST00000032768.15|Nr2f2|ENSMUSG00000030551.15|nuclear receptor subfamily 2, group F, member 2
mm39_v1_chr10_+_115854118_115854328	0.411189	CAGUCCA	ENSMUST00000063470.11|Ptprr|ENSMUSG00000020151.17|protein tyrosine phosphatase, receptor type, R
mm39_v1_chr8_+_112667328_112667341	0.4037	CAGUCCA	ENSMUST00000034428.8|Gabarapl2|ENSMUSG00000031950.8|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2
mm39_v1_chrX_+_100342749_100342808	0.380777	CAGUCCA	ENSMUST00000118111.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3	ENSMUST00000130555.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3	ENSMUST00000151528.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3
mm39_v1_chr8_-_58106057_58106074	0.377419	CAGUCCA	ENSMUST00000034021.12|Galnt7|ENSMUSG00000031608.14|polypeptide N-acetylgalactosaminyltransferase 7
mm39_v1_chr8_-_91074971_91075014	0.377007	CAGUCCA	ENSMUST00000109621.10|Tox3|ENSMUSG00000043668.14|TOX high mobility group box family member 3
mm39_v1_chr19_+_44551280_44551318	0.376671	CAGUCCA	ENSMUST00000040455.5|Hif1an|ENSMUSG00000036450.5|hypoxia-inducible factor 1, alpha subunit inhibitor
mm39_v1_chr8_-_89770790_89770823	0.375448	CAGUCCA	ENSMUST00000034090.8|Sall1|ENSMUSG00000031665.8|spalt like transcription factor 1
mm39_v1_chr2_+_120807498_120807588	0.371565	CAGUCCA	ENSMUST00000067582.14|Tmem62|ENSMUSG00000054484.15|transmembrane protein 62
mm39_v1_chr12_+_38830081_38830116	0.342242	CAGUCCA	ENSMUST00000095767.11|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr19_+_46316617_46316645	0.341806	CAGUCCA	ENSMUST00000026256.9|Fbxl15|ENSMUSG00000025226.12|F-box and leucine-rich repeat protein 15	ENSMUST00000177667.2|Fbxl15|ENSMUSG00000025226.12|F-box and leucine-rich repeat protein 15
mm39_v1_chr11_-_87878301_87878364	0.320909	CAGUCCA	ENSMUST00000020775.9|Dynll2|ENSMUSG00000020483.15|dynein light chain LC8-type 2
mm39_v1_chr7_-_46569662_46569734	0.317578	CAGUCCA	ENSMUST00000143413.3|Tsg101|ENSMUSG00000014402.16|tumor susceptibility gene 101	ENSMUST00000014546.15|Tsg101|ENSMUSG00000014402.16|tumor susceptibility gene 101
mm39_v1_chr2_-_84481058_84481093	0.309374	CAGUCCA	ENSMUST00000111670.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111697.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111696.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111678.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111690.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111695.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111677.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111698.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000099941.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111676.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111694.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111675.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111689.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111687.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111692.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111685.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111686.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111688.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111693.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111684.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1
mm39_v1_chr9_+_104446682_104446825	0.306992	CAGUCCA	ENSMUST00000057742.15|Cpne4|ENSMUSG00000032564.17|copine IV
mm39_v1_chr7_-_16348862_16348946	0.295848	CAGUCCA	ENSMUST00000171937.2|Arhgap35|ENSMUSG00000058230.13|Rho GTPase activating protein 35	ENSMUST00000075845.11|Arhgap35|ENSMUSG00000058230.13|Rho GTPase activating protein 35
mm39_v1_chr3_+_137573436_137573677	0.295527	CAGUCCA	ENSMUST00000090178.10|Dnajb14|ENSMUSG00000074212.8|DnaJ heat shock protein family (Hsp40) member B14
mm39_v1_chr11_-_101979297_101979359	0.288628	CAGUCCA	ENSMUST00000017458.11|Mpp2|ENSMUSG00000017314.13|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)
mm39_v1_chr19_-_42601202_42601252	0.282708	CAGUCCA	ENSMUST00000166128.2|Loxl4|ENSMUSG00000025185.15|lysyl oxidase-like 4	ENSMUST00000026190.14|Loxl4|ENSMUSG00000025185.15|lysyl oxidase-like 4	ENSMUST00000164786.8|Loxl4|ENSMUSG00000025185.15|lysyl oxidase-like 4
mm39_v1_chr3_-_122413361_122413372	0.277781	CAGUCCA	ENSMUST00000239148.2|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like	ENSMUST00000162409.8|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like	ENSMUST00000162947.3|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like
mm39_v1_chr12_-_85421467_85421621	0.275617	CAGUCCA	ENSMUST00000040766.9|Tmed10|ENSMUSG00000021248.10|transmembrane p24 trafficking protein 10
mm39_v1_chr3_-_143910926_143910981	0.272004	CAGUCCA	ENSMUST00000120539.8|Lmo4|ENSMUSG00000028266.18|LIM domain only 4	ENSMUST00000196264.5|Lmo4|ENSMUSG00000028266.18|LIM domain only 4
mm39_v1_chr11_+_29642937_29643001	0.262135	CAGUCCA	ENSMUST00000102843.10|Rtn4|ENSMUSG00000020458.17|reticulon 4	ENSMUST00000102842.10|Rtn4|ENSMUSG00000020458.17|reticulon 4	ENSMUST00000078830.11|Rtn4|ENSMUSG00000020458.17|reticulon 4	ENSMUST00000170731.8|Rtn4|ENSMUSG00000020458.17|reticulon 4
mm39_v1_chr10_-_118705029_118705091	0.259698	CAGUCCA	ENSMUST00000004281.10|Dyrk2|ENSMUSG00000028630.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm39_v1_chr2_-_84508385_84508462	0.258978	CAGUCCA	ENSMUST00000189772.2|Gm28635|ENSMUSG00000101645.2|predicted gene 28635	ENSMUST00000053664.9|Tmx2|ENSMUSG00000050043.17|thioredoxin-related transmembrane protein 2	ENSMUST00000111664.8|Tmx2|ENSMUSG00000050043.17|thioredoxin-related transmembrane protein 2
mm39_v1_chr4_-_138351313_138351326	0.257242	CAGUCCA	ENSMUST00000030533.12|Vwa5b1|ENSMUSG00000028753.13|von Willebrand factor A domain containing 5B1
mm39_v1_chr7_-_115637970_115637985	0.235308	CAGUCCA	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr7_-_90106375_90106437	0.229202	CAGUCCA	ENSMUST00000032844.7|Tmem126a|ENSMUSG00000030615.13|transmembrane protein 126A
mm39_v1_chr2_+_105499233_105499259	0.222547	CAGUCCA	ENSMUST00000111086.11|Pax6|ENSMUSG00000027168.22|paired box 6	ENSMUST00000111087.10|Pax6|ENSMUSG00000027168.22|paired box 6
mm39_v1_chr2_+_151923449_151923544	0.206318	CAGUCCA	ENSMUST00000064061.4|Scrt2|ENSMUSG00000060257.3|scratch family zinc finger 2
mm39_v1_chr1_-_80318197_80318229	0.203058	CAGUCCA	ENSMUST00000163119.8|Cul3|ENSMUSG00000004364.15|cullin 3
mm39_v1_chr9_+_45029080_45029179	0.193416	CAGUCCA	ENSMUST00000170998.9|Scn2b|ENSMUSG00000070304.13|sodium channel, voltage-gated, type II, beta	ENSMUST00000093855.4|Scn2b|ENSMUSG00000070304.13|sodium channel, voltage-gated, type II, beta
mm39_v1_chr11_+_97253221_97253377	0.188098	CAGUCCA	ENSMUST00000238729.2|Socs7|ENSMUSG00000038485.7|suppressor of cytokine signaling 7	ENSMUST00000045540.4|Socs7|ENSMUSG00000038485.7|suppressor of cytokine signaling 7
mm39_v1_chr17_-_91400499_91400504	0.172304	CAGUCCA	ENSMUST00000160844.10|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chrX_-_87159237_87159281	0.170121	CAGUCCA	ENSMUST00000113966.8|Il1rapl1|ENSMUSG00000052372.11|interleukin 1 receptor accessory protein-like 1	ENSMUST00000113964.2|Il1rapl1|ENSMUSG00000052372.11|interleukin 1 receptor accessory protein-like 1
mm39_v1_chr4_-_82423985_82424044	0.163688	CAGUCCA	ENSMUST00000107245.9|Nfib|ENSMUSG00000008575.18|nuclear factor I/B	ENSMUST00000107246.2|Nfib|ENSMUSG00000008575.18|nuclear factor I/B
mm39_v1_chr12_-_25146078_25146095	0.159602	CAGUCCA	ENSMUST00000222667.2|Id2|ENSMUSG00000020644.10|inhibitor of DNA binding 2	ENSMUST00000020974.7|Id2|ENSMUSG00000020644.10|inhibitor of DNA binding 2
mm39_v1_chr11_-_86648309_86648399	0.157591	CAGUCCA	ENSMUST00000060766.16|Cltc|ENSMUSG00000047126.18|clathrin, heavy polypeptide (Hc)	ENSMUST00000103186.11|Cltc|ENSMUSG00000047126.18|clathrin, heavy polypeptide (Hc)
mm39_v1_chr4_+_13743424_13743478	0.153232	CAGUCCA	ENSMUST00000006761.10|Runx1t1|ENSMUSG00000006586.16|RUNX1 translocation partner 1
mm39_v1_chr2_+_74656145_74656223	0.151922	CAGUCCA	ENSMUST00000028511.8|Mtx2|ENSMUSG00000027099.10|metaxin 2
mm39_v1_chr1_+_74324089_74324231	0.148177	CAGUCCA	ENSMUST00000113805.8|Pnkd|ENSMUSG00000026179.15|paroxysmal nonkinesiogenic dyskinesia	ENSMUST00000027370.13|Pnkd|ENSMUSG00000026179.15|paroxysmal nonkinesiogenic dyskinesia	ENSMUST00000087226.11|Pnkd|ENSMUSG00000026179.15|paroxysmal nonkinesiogenic dyskinesia
mm39_v1_chr12_-_83643964_83644020	0.144776	CAGUCCA	ENSMUST00000048319.6|Zfyve1|ENSMUSG00000042628.9|zinc finger, FYVE domain containing 1
mm39_v1_chr14_-_55959633_55959668	0.143083	CAGUCCA	ENSMUST00000169237.8|Rabggta|ENSMUSG00000040472.16|Rab geranylgeranyl transferase, a subunit	ENSMUST00000062861.15|Rabggta|ENSMUSG00000040472.16|Rab geranylgeranyl transferase, a subunit	ENSMUST00000227061.2|Rabggta|ENSMUSG00000040472.16|Rab geranylgeranyl transferase, a subunit
mm39_v1_chr8_+_84334805_84334827	0.138848	CAGUCCA	ENSMUST00000005620.10|Dnajb1|ENSMUSG00000005483.11|DnaJ heat shock protein family (Hsp40) member B1
mm39_v1_chr4_-_129566505_129566567	0.133512	CAGUCCA	ENSMUST00000102590.11|Kpna6|ENSMUSG00000003731.14|karyopherin (importin) alpha 6
mm39_v1_chr6_-_85310393_85310424	0.124865	CAGUCCA	ENSMUST00000059034.13|Sfxn5|ENSMUSG00000033720.13|sideroflexin 5	ENSMUST00000045846.12|Sfxn5|ENSMUSG00000033720.13|sideroflexin 5	ENSMUST00000113788.2|Sfxn5|ENSMUSG00000033720.13|sideroflexin 5
mm39_v1_chr18_-_40352372_40352482	0.120644	CAGUCCA	ENSMUST00000025364.6|Yipf5|ENSMUSG00000024487.6|Yip1 domain family, member 5
mm39_v1_chr16_-_32065972_32065997	0.115727	CAGUCCA	ENSMUST00000042732.6|Fbxo45|ENSMUSG00000035764.6|F-box protein 45
mm39_v1_chr3_-_154036180_154036296	0.113883	CAGUCCA	ENSMUST00000177846.8|Lhx8|ENSMUSG00000096225.8|LIM homeobox protein 8
mm39_v1_chr12_+_4819277_4819337	0.113708	CAGUCCA	ENSMUST00000020967.11|Pfn4|ENSMUSG00000020639.15|profilin family, member 4
mm39_v1_chr3_-_110050312_110050326	0.104994	CAGUCCA	ENSMUST00000156177.9|Ntng1|ENSMUSG00000059857.16|netrin G1
mm39_v1_chr11_-_5492175_5492221	0.104983	CAGUCCA	ENSMUST00000020776.5|Ccdc117|ENSMUSG00000020482.5|coiled-coil domain containing 117
mm39_v1_chr11_-_3402355_3402378	0.10467	CAGUCCA	ENSMUST00000077078.12|Rnf185|ENSMUSG00000020448.17|ring finger protein 185	ENSMUST00000064364.3|Rnf185|ENSMUSG00000020448.17|ring finger protein 185
mm39_v1_chr8_+_3565377_3565397	0.0969024	CAGUCCA	ENSMUST00000111070.4|Pnpla6|ENSMUSG00000004565.16|patatin-like phospholipase domain containing 6	ENSMUST00000004681.14|Pnpla6|ENSMUSG00000004565.16|patatin-like phospholipase domain containing 6	ENSMUST00000208310.2|Pnpla6|ENSMUSG00000004565.16|patatin-like phospholipase domain containing 6
mm39_v1_chr9_+_45749869_45749892	0.0876692	CAGUCCA	ENSMUST00000078111.11|Bace1|ENSMUSG00000032086.13|beta-site APP cleaving enzyme 1	ENSMUST00000034591.11|Bace1|ENSMUSG00000032086.13|beta-site APP cleaving enzyme 1
mm39_v1_chr2_-_167334746_167334812	0.0855909	CAGUCCA	ENSMUST00000109211.9|Spata2|ENSMUSG00000047030.16|spermatogenesis associated 2	ENSMUST00000057627.16|Spata2|ENSMUSG00000047030.16|spermatogenesis associated 2
mm39_v1_chr1_-_34882131_34882148	0.0848988	CAGUCCA	ENSMUST00000167518.8|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B	ENSMUST00000047534.12|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B
mm39_v1_chr12_-_31549538_31549615	0.082439	CAGUCCA	ENSMUST00000064240.14|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000185739.8|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000188326.3|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000101499.10|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000085487.12|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1
mm39_v1_chr4_+_15265798_15265831	0.0822089	CAGUCCA	ENSMUST00000062684.9|Tmem64|ENSMUSG00000043252.9|transmembrane protein 64
mm39_v1_chr4_+_140875222_140875282	0.0801823	CAGUCCA	ENSMUST00000030757.10|Fbxo42|ENSMUSG00000028920.10|F-box protein 42
mm39_v1_chr14_-_61677258_61677323	0.0798892	CAGUCCA	ENSMUST00000022496.9|Kpna3|ENSMUSG00000021929.10|karyopherin (importin) alpha 3
mm39_v1_chr4_-_148529187_148529241	0.0748295	CAGUCCA	ENSMUST00000051633.3|Ubiad1|ENSMUSG00000047719.3|UbiA prenyltransferase domain containing 1
mm39_v1_chr2_-_152239966_152239997	0.0738195	CAGUCCA	ENSMUST00000063332.9|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12	ENSMUST00000182625.2|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12
mm39_v1_chr9_-_102231884_102231898	0.0730564	CAGUCCA	ENSMUST00000035129.14|Ephb1|ENSMUSG00000032537.16|Eph receptor B1	ENSMUST00000085169.12|Ephb1|ENSMUSG00000032537.16|Eph receptor B1	ENSMUST00000149800.3|Ephb1|ENSMUSG00000032537.16|Eph receptor B1
mm39_v1_chr7_+_121666388_121666438	0.0671608	CAGUCCA	ENSMUST00000033158.6|Ubfd1|ENSMUSG00000030870.13|ubiquitin family domain containing 1
mm39_v1_chr11_-_115405200_115405219	0.0587516	CAGUCCA	ENSMUST00000021083.7|Jpt1|ENSMUSG00000020737.13|Jupiter microtubule associated homolog 1
mm39_v1_chr19_+_41471067_41471128	0.0586327	CAGUCCA	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr1_-_185061525_185061603	0.0485644	CAGUCCA	ENSMUST00000027921.11|Iars2|ENSMUSG00000026618.12|isoleucine-tRNA synthetase 2, mitochondrial	ENSMUST00000110975.8|Iars2|ENSMUSG00000026618.12|isoleucine-tRNA synthetase 2, mitochondrial	ENSMUST00000110974.4|Iars2|ENSMUSG00000026618.12|isoleucine-tRNA synthetase 2, mitochondrial
mm39_v1_chr6_-_114898739_114898798	0.0478845	CAGUCCA	ENSMUST00000032459.14|Vgll4|ENSMUSG00000030315.16|vestigial like family member 4
mm39_v1_chr5_-_92231314_92231416	0.0478295	CAGUCCA	ENSMUST00000169094.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2	ENSMUST00000167918.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2
mm39_v1_chr9_-_99450948_99450961	0.0454854	CAGUCCA	ENSMUST00000035043.12|Armc8|ENSMUSG00000032468.12|armadillo repeat containing 8
mm39_v1_chr4_-_132237804_132237820	0.0353568	CAGUCCA	ENSMUST00000030724.9|Sesn2|ENSMUSG00000028893.9|sestrin 2
mm39_v1_chr10_-_42354482_42354561	0.0333118	CAGUCCA	ENSMUST00000041024.15|Afg1l|ENSMUSG00000038302.15|AFG1 like ATPase
mm39_v1_chr8_-_116434517_116434533	0.0250635	CAGUCCA	ENSMUST00000109104.2|Maf|ENSMUSG00000055435.7|avian musculoaponeurotic fibrosarcoma oncogene homolog
mm39_v1_chr2_+_152511381_152511459	0.0155067	CAGUCCA	ENSMUST00000125366.8|H13|ENSMUSG00000019188.17|histocompatibility 13	ENSMUST00000109825.8|H13|ENSMUSG00000019188.17|histocompatibility 13	ENSMUST00000089059.9|H13|ENSMUSG00000019188.17|histocompatibility 13	ENSMUST00000079247.4|H13|ENSMUSG00000019188.17|histocompatibility 13
mm39_v1_chr3_+_107008867_107008883	0.00816635	CAGUCCA	ENSMUST00000038695.6|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr12_+_8724129_8724150	0.00360024	CAGUCCA	ENSMUST00000111123.9|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000178015.8|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000020915.10|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2
mm39_v1_chr17_+_36227433_36227458	0.00337588	CAGUCCA	ENSMUST00000087211.9|Ppp1r10|ENSMUSG00000039220.17|protein phosphatase 1, regulatory subunit 10
mm39_v1_chr3_-_104869237_104869237	0.000910697	CAGUCCA	ENSMUST00000029429.6|Wnt2b|ENSMUSG00000027840.6|wingless-type MMTV integration site family, member 2B
