mm39_v1_chr4_-_55532453_55532485	7.4705	CAGUGCA	ENSMUST00000132746.2|Klf4|ENSMUSG00000003032.9|Kruppel-like factor 4 (gut)	ENSMUST00000107619.3|Klf4|ENSMUSG00000003032.9|Kruppel-like factor 4 (gut)
mm39_v1_chr12_+_37158532_37158545	6.81341	CAGUGCA	ENSMUST00000041183.7|Meox2|ENSMUSG00000036144.7|mesenchyme homeobox 2
mm39_v1_chr17_-_32074754_32074780	6.62684	CAGUGCA	ENSMUST00000024839.6|Sik1|ENSMUSG00000024042.8|salt inducible kinase 1
mm39_v1_chr17_+_75312520_75312563	5.9094	CAGUGCA	ENSMUST00000234490.2|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1	ENSMUST00000001927.12|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1
mm39_v1_chr8_+_121811091_121811125	5.27128	CAGUGCA	ENSMUST00000181504.2|Foxf1|ENSMUSG00000042812.6|forkhead box F1
mm39_v1_chr15_-_73056713_73056822	4.93273	CAGUGCA	ENSMUST00000044113.12|Ago2|ENSMUSG00000036698.12|argonaute RISC catalytic subunit 2
mm39_v1_chrX_-_141749704_141749730	4.78741	CAGUGCA	ENSMUST00000041317.3|Ammecr1|ENSMUSG00000042225.4|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm39_v1_chr2_+_131028861_131028891	4.50251	CAGUGCA	ENSMUST00000028804.15|Cdc25b|ENSMUSG00000027330.17|cell division cycle 25B	ENSMUST00000079857.9|Cdc25b|ENSMUSG00000027330.17|cell division cycle 25B
mm39_v1_chr8_-_11362731_11362826	4.14446	CAGUGCA	ENSMUST00000033898.10|Col4a1|ENSMUSG00000031502.12|collagen, type IV, alpha 1
mm39_v1_chr2_-_125348305_125348328	4.14382	CAGUGCA	ENSMUST00000028633.13|Fbn1|ENSMUSG00000027204.14|fibrillin 1
mm39_v1_chr9_+_95519654_95519685	4.03969	CAGUGCA	ENSMUST00000015498.9|Pcolce2|ENSMUSG00000015354.9|procollagen C-endopeptidase enhancer 2
mm39_v1_chr10_-_70995485_70995537	4.01031	CAGUGCA	ENSMUST00000014473.6|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1	ENSMUST00000143791.8|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1
mm39_v1_chr5_-_21156766_21156824	3.95749	CAGUGCA	ENSMUST00000036489.10|Rsbn1l|ENSMUSG00000039968.10|round spermatid basic protein 1-like
mm39_v1_chr9_+_118435755_118435823	3.80457	CAGUGCA	ENSMUST00000044165.14|Itga9|ENSMUSG00000039115.14|integrin alpha 9
mm39_v1_chr16_+_30418535_30418552	3.69918	CAGUGCA	ENSMUST00000059078.4|Fam43a|ENSMUSG00000046546.4|family with sequence similarity 43, member A
mm39_v1_chr7_+_112278520_112278532	3.54263	CAGUGCA	ENSMUST00000084705.13|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239442.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239404.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000059768.18|Tead1|ENSMUSG00000055320.19|TEA domain family member 1
mm39_v1_chr15_-_103275190_103275225	3.52842	CAGUGCA	ENSMUST00000023128.8|Itga5|ENSMUSG00000000555.9|integrin alpha 5 (fibronectin receptor alpha)
mm39_v1_chr6_+_97783975_97784028	3.43004	CAGUGCA	ENSMUST00000203884.3|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor	ENSMUST00000043637.14|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor
mm39_v1_chr9_+_22010512_22010583	3.37478	CAGUGCA	ENSMUST00000214601.2|Cnn1|ENSMUSG00000001349.6|calponin 1	ENSMUST00000001384.6|Cnn1|ENSMUSG00000001349.6|calponin 1
mm39_v1_chr5_-_136596299_136596390	3.37132	CAGUGCA	ENSMUST00000004097.16|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr18_-_10182007_10182092	3.35053	CAGUGCA	ENSMUST00000067947.7|Rock1|ENSMUSG00000024290.10|Rho-associated coiled-coil containing protein kinase 1
mm39_v1_chr13_+_5911481_5911521	3.1858	CAGUGCA	ENSMUST00000000080.8|Klf6|ENSMUSG00000000078.8|Kruppel-like factor 6
mm39_v1_chr1_-_181669891_181669949	3.17501	CAGUGCA	ENSMUST00000193028.2|Lbr|ENSMUSG00000004880.12|lamin B receptor	ENSMUST00000191878.6|Lbr|ENSMUSG00000004880.12|lamin B receptor	ENSMUST00000005003.12|Lbr|ENSMUSG00000004880.12|lamin B receptor
mm39_v1_chr11_-_88609048_88609136	3.13437	CAGUGCA	ENSMUST00000107909.8|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr6_-_39183712_39183769	3.13202	CAGUGCA	ENSMUST00000002305.9|Kdm7a|ENSMUSG00000042599.9|lysine (K)-specific demethylase 7A
mm39_v1_chr2_+_173952123_173952191	3.04232	CAGUGCA	ENSMUST00000044415.16|Npepl1|ENSMUSG00000039263.17|aminopeptidase-like 1
mm39_v1_chr3_+_96465265_96465284	3.02424	CAGUGCA	ENSMUST00000074519.13|Txnip|ENSMUSG00000038393.15|thioredoxin interacting protein	ENSMUST00000049093.8|Txnip|ENSMUSG00000038393.15|thioredoxin interacting protein
mm39_v1_chr2_-_179618439_179618458	2.98241	CAGUGCA	ENSMUST00000041618.13|Taf4|ENSMUSG00000039117.17|TATA-box binding protein associated factor 4	ENSMUST00000227325.2|Taf4|ENSMUSG00000039117.17|TATA-box binding protein associated factor 4
mm39_v1_chr15_+_5173342_5173379	2.9723	CAGUGCA	ENSMUST00000051186.9|Prkaa1|ENSMUSG00000050697.10|protein kinase, AMP-activated, alpha 1 catalytic subunit	ENSMUST00000228218.2|Prkaa1|ENSMUSG00000050697.10|protein kinase, AMP-activated, alpha 1 catalytic subunit
mm39_v1_chr2_-_160208977_160208993	2.94955	CAGUGCA	ENSMUST00000099126.5|Mafb|ENSMUSG00000074622.5|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm39_v1_chr6_+_7844759_7844859	2.92722	CAGUGCA	ENSMUST00000040159.6|C1galt1|ENSMUSG00000042460.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
mm39_v1_chr5_+_143608194_143608215	2.9201	CAGUGCA	ENSMUST00000116456.10|Cyth3|ENSMUSG00000018001.19|cytohesin 3
mm39_v1_chr7_+_100122192_100122205	2.91618	CAGUGCA	ENSMUST00000032958.14|Ucp3|ENSMUSG00000032942.15|uncoupling protein 3 (mitochondrial, proton carrier)	ENSMUST00000107059.2|Ucp3|ENSMUSG00000032942.15|uncoupling protein 3 (mitochondrial, proton carrier)
mm39_v1_chr17_-_26727437_26727493	2.82529	CAGUGCA	ENSMUST00000236661.2|Dusp1|ENSMUSG00000024190.8|dual specificity phosphatase 1	ENSMUST00000025025.7|Dusp1|ENSMUSG00000024190.8|dual specificity phosphatase 1
mm39_v1_chr16_-_85698679_85698716	2.79746	CAGUGCA	ENSMUST00000023611.7|Adamts5|ENSMUSG00000022894.7|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm39_v1_chr11_-_106050927_106050994	2.71679	CAGUGCA	ENSMUST00000045923.10|Limd2|ENSMUSG00000040699.14|LIM domain containing 2
mm39_v1_chr15_+_102898966_102899039	2.6949	CAGUGCA	ENSMUST00000001703.8|Hoxc8|ENSMUSG00000001657.8|homeobox C8
mm39_v1_chrX_+_158410229_158410294	2.6497	CAGUGCA	ENSMUST00000112456.9|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1
mm39_v1_chr8_-_116434517_116434533	2.64541	CAGUGCA	ENSMUST00000109104.2|Maf|ENSMUSG00000055435.7|avian musculoaponeurotic fibrosarcoma oncogene homolog
mm39_v1_chr2_-_169973076_169973140	2.63944	CAGUGCA	ENSMUST00000063710.13|Zfp217|ENSMUSG00000052056.15|zinc finger protein 217
mm39_v1_chr5_-_24745436_24745590	2.62643	CAGUGCA	ENSMUST00000048302.13|Asb10|ENSMUSG00000038204.14|ankyrin repeat and SOCS box-containing 10	ENSMUST00000119657.2|Asb10|ENSMUSG00000038204.14|ankyrin repeat and SOCS box-containing 10
mm39_v1_chr9_-_44792575_44792621	2.62444	CAGUGCA	ENSMUST00000114689.8|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000002095.11|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000128768.3|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A
mm39_v1_chr11_-_49603501_49603555	2.57183	CAGUGCA	ENSMUST00000020624.7|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6	ENSMUST00000145353.8|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6
mm39_v1_chr18_-_10610048_10610146	2.55169	CAGUGCA	ENSMUST00000115864.8|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1	ENSMUST00000145320.2|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1	ENSMUST00000097670.10|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1
mm39_v1_chrX_-_165992311_165992475	2.49449	CAGUGCA	ENSMUST00000112172.4|Tmsb4x|ENSMUSG00000049775.17|thymosin, beta 4, X chromosome
mm39_v1_chr9_-_30833748_30833861	2.41651	CAGUGCA	ENSMUST00000065112.7|Adamts15|ENSMUSG00000033453.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15
mm39_v1_chr4_+_9844349_9844372	2.36062	CAGUGCA	ENSMUST00000057613.3|Gdf6|ENSMUSG00000051279.3|growth differentiation factor 6
mm39_v1_chr11_+_115714853_115714923	2.35669	CAGUGCA	ENSMUST00000103032.11|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component	ENSMUST00000133250.8|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component	ENSMUST00000177736.8|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component
mm39_v1_chr4_+_148888877_148888897	2.32441	CAGUGCA	ENSMUST00000094464.10|Casz1|ENSMUSG00000028977.18|castor zinc finger 1	ENSMUST00000122222.8|Casz1|ENSMUSG00000028977.18|castor zinc finger 1
mm39_v1_chr13_+_81031512_81031543	2.31487	CAGUGCA	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr6_+_17463748_17463808	2.30921	CAGUGCA	ENSMUST00000115443.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr12_-_79343040_79343086	2.23974	CAGUGCA	ENSMUST00000218377.2|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26	ENSMUST00000021547.8|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26
mm39_v1_chr11_+_97554192_97554240	2.19294	CAGUGCA	ENSMUST00000044730.12|Mllt6|ENSMUSG00000038437.12|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6
mm39_v1_chr17_-_17845293_17845329	2.18255	CAGUGCA	ENSMUST00000041047.4|Lnpep|ENSMUSG00000023845.8|leucyl/cystinyl aminopeptidase
mm39_v1_chr9_-_119151428_119151517	2.13597	CAGUGCA	ENSMUST00000040853.11|Oxsr1|ENSMUSG00000036737.13|oxidative-stress responsive 1
mm39_v1_chr6_-_67014383_67014397	2.1323	CAGUGCA	ENSMUST00000043098.9|Gadd45a|ENSMUSG00000036390.9|growth arrest and DNA-damage-inducible 45 alpha
mm39_v1_chr12_+_76417040_76417040	2.10221	CAGUGCA	ENSMUST00000042779.4|Zbtb1|ENSMUSG00000033454.7|zinc finger and BTB domain containing 1
mm39_v1_chr4_-_140867038_140867083	2.10189	CAGUGCA	ENSMUST00000148204.8|Szrd1|ENSMUSG00000040842.18|SUZ RNA binding domain containing 1	ENSMUST00000102487.4|Szrd1|ENSMUSG00000040842.18|SUZ RNA binding domain containing 1
mm39_v1_chr8_+_129085719_129085787	2.09358	CAGUGCA	ENSMUST00000026917.10|Nrp1|ENSMUSG00000025810.10|neuropilin 1
mm39_v1_chr4_-_44167509_44167609	2.09251	CAGUGCA	ENSMUST00000098098.9|Rnf38|ENSMUSG00000035696.16|ring finger protein 38
mm39_v1_chr1_-_119349969_119350021	2.04981	CAGUGCA	ENSMUST00000038765.6|Inhbb|ENSMUSG00000037035.6|inhibin beta-B
mm39_v1_chr3_-_116217579_116217681	2.02317	CAGUGCA	ENSMUST00000106491.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A	ENSMUST00000090464.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A
mm39_v1_chr15_-_50753061_50753118	2.01626	CAGUGCA	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr4_-_144973423_144973453	2.00786	CAGUGCA	ENSMUST00000030336.11|Tnfrsf1b|ENSMUSG00000028599.11|tumor necrosis factor receptor superfamily, member 1b
mm39_v1_chr9_+_72439496_72439553	1.92999	CAGUGCA	ENSMUST00000163401.9|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7	ENSMUST00000093820.10|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7
mm39_v1_chr4_+_8691303_8691381	1.92925	CAGUGCA	ENSMUST00000051558.10|Chd7|ENSMUSG00000041235.13|chromodomain helicase DNA binding protein 7
mm39_v1_chr16_+_10884156_10884247	1.91461	CAGUGCA	ENSMUST00000089011.6|Snn|ENSMUSG00000037972.8|stannin
mm39_v1_chr15_+_6737853_6737883	1.89032	CAGUGCA	ENSMUST00000061656.8|Rictor|ENSMUSG00000050310.10|RPTOR independent companion of MTOR, complex 2
mm39_v1_chr15_-_79626719_79626763	1.89019	CAGUGCA	ENSMUST00000089311.11|Sun2|ENSMUSG00000042524.15|Sad1 and UNC84 domain containing 2	ENSMUST00000046259.14|Sun2|ENSMUSG00000042524.15|Sad1 and UNC84 domain containing 2
mm39_v1_chr11_-_69304501_69304501	1.88511	CAGUGCA	ENSMUST00000094077.5|Kdm6b|ENSMUSG00000018476.8|KDM1 lysine (K)-specific demethylase 6B
mm39_v1_chr15_-_96358612_96358724	1.88214	CAGUGCA	ENSMUST00000047835.8|Scaf11|ENSMUSG00000033228.9|SR-related CTD-associated factor 11
mm39_v1_chr7_+_122723365_122723446	1.87357	CAGUGCA	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr2_+_18069375_18069516	1.87257	CAGUGCA	ENSMUST00000114671.8|Mllt10|ENSMUSG00000026743.17|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	ENSMUST00000114680.9|Mllt10|ENSMUSG00000026743.17|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
mm39_v1_chr9_-_21763898_21763940	1.82064	CAGUGCA	ENSMUST00000217336.2|Dock6|ENSMUSG00000032198.10|dedicator of cytokinesis 6	ENSMUST00000034728.9|Dock6|ENSMUSG00000032198.10|dedicator of cytokinesis 6
mm39_v1_chr7_+_27878894_27878960	1.80726	CAGUGCA	ENSMUST00000085901.13|Dyrk1b|ENSMUSG00000002409.19|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	ENSMUST00000172761.8|Dyrk1b|ENSMUSG00000002409.19|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm39_v1_chr2_-_59955995_59956119	1.77928	CAGUGCA	ENSMUST00000112550.8|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr9_-_82857528_82857569	1.7506	CAGUGCA	ENSMUST00000034787.12|Phip|ENSMUSG00000032253.14|pleckstrin homology domain interacting protein
mm39_v1_chr4_+_102971581_102971592	1.74912	CAGUGCA	ENSMUST00000106858.8|Mier1|ENSMUSG00000028522.17|MEIR1 treanscription regulator
mm39_v1_chr9_-_20871081_20871184	1.72829	CAGUGCA	ENSMUST00000177754.9|Dnmt1|ENSMUSG00000004099.17|DNA methyltransferase (cytosine-5) 1
mm39_v1_chr15_-_98676007_98676031	1.72541	CAGUGCA	ENSMUST00000226655.2|Wnt10b|ENSMUSG00000022996.16|wingless-type MMTV integration site family, member 10B	ENSMUST00000228546.2|Wnt10b|ENSMUSG00000022996.16|wingless-type MMTV integration site family, member 10B	ENSMUST00000023732.12|Wnt10b|ENSMUSG00000022996.16|wingless-type MMTV integration site family, member 10B	ENSMUST00000226610.2|Wnt10b|ENSMUSG00000022996.16|wingless-type MMTV integration site family, member 10B
mm39_v1_chr17_+_43700327_43700390	1.70832	CAGUGCA	ENSMUST00000113599.2|Adgrf5|ENSMUSG00000056492.7|adhesion G protein-coupled receptor F5	ENSMUST00000224278.2|Adgrf5|ENSMUSG00000056492.7|adhesion G protein-coupled receptor F5	ENSMUST00000225466.2|Adgrf5|ENSMUSG00000056492.7|adhesion G protein-coupled receptor F5
mm39_v1_chr6_-_5496261_5496316	1.66115	CAGUGCA	ENSMUST00000203347.3|Pdk4|ENSMUSG00000019577.7|pyruvate dehydrogenase kinase, isoenzyme 4	ENSMUST00000019721.7|Pdk4|ENSMUSG00000019577.7|pyruvate dehydrogenase kinase, isoenzyme 4
mm39_v1_chr13_+_42205491_42205548	1.65025	CAGUGCA	ENSMUST00000060148.6|Hivep1|ENSMUSG00000021366.9|human immunodeficiency virus type I enhancer binding protein 1
mm39_v1_chr15_+_76235503_76235537	1.64586	CAGUGCA	ENSMUST00000023212.15|Maf1|ENSMUSG00000022553.17|MAF1 homolog, negative regulator of RNA polymerase III	ENSMUST00000160172.8|Maf1|ENSMUSG00000022553.17|MAF1 homolog, negative regulator of RNA polymerase III
mm39_v1_chr3_+_51323383_51323465	1.63099	CAGUGCA	ENSMUST00000029303.13|Naa15|ENSMUSG00000063273.12|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm39_v1_chr4_+_128999325_128999416	1.62712	CAGUGCA	ENSMUST00000106064.10|Tmem54|ENSMUSG00000028786.16|transmembrane protein 54	ENSMUST00000030575.15|Tmem54|ENSMUSG00000028786.16|transmembrane protein 54	ENSMUST00000030577.11|Tmem54|ENSMUSG00000028786.16|transmembrane protein 54
mm39_v1_chr18_+_84106188_84106305	1.60782	CAGUGCA	ENSMUST00000060223.4|Zadh2|ENSMUSG00000049090.4|zinc binding alcohol dehydrogenase, domain containing 2
mm39_v1_chr4_-_129271909_129271909	1.58446	CAGUGCA	ENSMUST00000030610.3|Zbtb8a|ENSMUSG00000028807.3|zinc finger and BTB domain containing 8a
mm39_v1_chr8_-_48128164_48128201	1.58189	CAGUGCA	ENSMUST00000080353.3|Ing2|ENSMUSG00000063049.5|inhibitor of growth family, member 2
mm39_v1_chr13_-_115238427_115238520	1.54894	CAGUGCA	ENSMUST00000224997.2|Gm49395|ENSMUSG00000114470.2|predicted gene, 49395	ENSMUST00000061673.9|Itga1|ENSMUSG00000042284.11|integrin alpha 1
mm39_v1_chr2_+_25070749_25070776	1.54484	CAGUGCA	ENSMUST00000104999.4|Nrarp|ENSMUSG00000078202.4|Notch-regulated ankyrin repeat protein
mm39_v1_chr18_+_14916295_14916316	1.50634	CAGUGCA	ENSMUST00000234789.2|Taf4b|ENSMUSG00000054321.8|TATA-box binding protein associated factor 4b	ENSMUST00000169862.2|Taf4b|ENSMUSG00000054321.8|TATA-box binding protein associated factor 4b
mm39_v1_chr4_-_19708910_19709004	1.47942	CAGUGCA	ENSMUST00000108246.9|Wwp1|ENSMUSG00000041058.16|WW domain containing E3 ubiquitin protein ligase 1
mm39_v1_chr14_+_30201569_30201642	1.47324	CAGUGCA	ENSMUST00000022535.9|Dcp1a|ENSMUSG00000021962.10|decapping mRNA 1A	ENSMUST00000223658.2|Dcp1a|ENSMUSG00000021962.10|decapping mRNA 1A
mm39_v1_chr9_+_86904067_86904134	1.4637	CAGUGCA	ENSMUST00000168529.9|Cyb5r4|ENSMUSG00000032872.17|cytochrome b5 reductase 4
mm39_v1_chr4_+_140427799_140427855	1.44602	CAGUGCA	ENSMUST00000071169.9|Rcc2|ENSMUSG00000040945.14|regulator of chromosome condensation 2
mm39_v1_chr2_+_127967951_127967976	1.44339	CAGUGCA	ENSMUST00000089634.12|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000019281.14|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000110341.9|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000103211.8|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000103210.2|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)
mm39_v1_chr3_-_36626101_36626299	1.43919	CAGUGCA	ENSMUST00000029270.10|Ccna2|ENSMUSG00000027715.10|cyclin A2
mm39_v1_chr13_-_99027544_99027571	1.43773	CAGUGCA	ENSMUST00000109399.9|Tnpo1|ENSMUSG00000009470.18|transportin 1
mm39_v1_chr18_+_73706115_73706115	1.4236	CAGUGCA	ENSMUST00000091852.5|Mex3c|ENSMUSG00000037253.9|mex3 RNA binding family member C
mm39_v1_chr6_-_97125817_97125896	1.3997	CAGUGCA	ENSMUST00000204331.3|Eogt|ENSMUSG00000035245.13|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	ENSMUST00000142116.2|Eogt|ENSMUSG00000035245.13|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	ENSMUST00000113387.8|Eogt|ENSMUSG00000035245.13|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase
mm39_v1_chr8_+_12807001_12807028	1.3982	CAGUGCA	ENSMUST00000033818.10|Atp11a|ENSMUSG00000031441.16|ATPase, class VI, type 11A	ENSMUST00000091237.12|Atp11a|ENSMUSG00000031441.16|ATPase, class VI, type 11A
mm39_v1_chr5_+_32616187_32616312	1.37846	CAGUGCA	ENSMUST00000015100.15|Ppp1cb|ENSMUSG00000014956.16|protein phosphatase 1 catalytic subunit beta
mm39_v1_chr11_-_109364424_109364504	1.3784	CAGUGCA	ENSMUST00000070152.12|Slc16a6|ENSMUSG00000041920.15|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm39_v1_chr6_-_13677928_13677974	1.34429	CAGUGCA	ENSMUST00000203078.2|Bmt2|ENSMUSG00000042742.8|base methyltransferase of 25S rRNA 2	ENSMUST00000045235.8|Bmt2|ENSMUSG00000042742.8|base methyltransferase of 25S rRNA 2
mm39_v1_chr6_-_56878854_56878876	1.33842	CAGUGCA	ENSMUST00000101367.9|Nt5c3|ENSMUSG00000029780.15|5'-nucleotidase, cytosolic III
mm39_v1_chr5_+_76331727_76331817	1.30606	CAGUGCA	ENSMUST00000031144.14|Tmem165|ENSMUSG00000029234.14|transmembrane protein 165
mm39_v1_chr9_-_43017249_43017322	1.30176	CAGUGCA	ENSMUST00000165665.9|Arhgef12|ENSMUSG00000059495.15|Rho guanine nucleotide exchange factor (GEF) 12
mm39_v1_chr2_-_62242562_62242581	1.29813	CAGUGCA	ENSMUST00000047812.8|Dpp4|ENSMUSG00000035000.9|dipeptidylpeptidase 4
mm39_v1_chr8_-_8711211_8711250	1.26713	CAGUGCA	ENSMUST00000001319.15|Efnb2|ENSMUSG00000001300.17|ephrin B2
mm39_v1_chr9_+_44516140_44516218	1.2651	CAGUGCA	ENSMUST00000170489.2|Ddx6|ENSMUSG00000032097.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	ENSMUST00000217034.2|Ddx6|ENSMUSG00000032097.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm39_v1_chr2_-_69416365_69416409	1.23832	CAGUGCA	ENSMUST00000100051.9|Lrp2|ENSMUSG00000027070.15|low density lipoprotein receptor-related protein 2	ENSMUST00000092551.5|Lrp2|ENSMUSG00000027070.15|low density lipoprotein receptor-related protein 2	ENSMUST00000080953.12|Lrp2|ENSMUSG00000027070.15|low density lipoprotein receptor-related protein 2
mm39_v1_chr13_+_24985640_24985640	1.23281	CAGUGCA	ENSMUST00000019276.12|BC005537|ENSMUSG00000019132.12|cDNA sequence BC005537
mm39_v1_chr6_+_134897364_134897394	1.21973	CAGUGCA	ENSMUST00000067327.11|Cdkn1b|ENSMUSG00000003031.15|cyclin-dependent kinase inhibitor 1B	ENSMUST00000003115.9|Cdkn1b|ENSMUSG00000003031.15|cyclin-dependent kinase inhibitor 1B
mm39_v1_chrX_+_105070907_105070929	1.21501	CAGUGCA	ENSMUST00000055941.7|Atp7a|ENSMUSG00000033792.13|ATPase, Cu++ transporting, alpha polypeptide
mm39_v1_chr15_+_12205095_12205124	1.21494	CAGUGCA	ENSMUST00000038172.16|Mtmr12|ENSMUSG00000039458.16|myotubularin related protein 12
mm39_v1_chr16_+_64672334_64672437	1.20892	CAGUGCA	ENSMUST00000067744.8|Cggbp1|ENSMUSG00000054604.8|CGG triplet repeat binding protein 1
mm39_v1_chr6_+_15720653_15720747	1.20436	CAGUGCA	ENSMUST00000101663.10|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000190255.7|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000189359.7|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000125326.8|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing
mm39_v1_chr2_+_152068729_152068828	1.20377	CAGUGCA	ENSMUST00000099224.10|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide	ENSMUST00000124791.8|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide	ENSMUST00000133119.2|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide
mm39_v1_chr6_+_113214804_113214836	1.20127	CAGUGCA	ENSMUST00000113146.9|Mtmr14|ENSMUSG00000030269.15|myotubularin related protein 14
mm39_v1_chr8_+_111448092_111448118	1.19213	CAGUGCA	ENSMUST00000052457.15|Mtss2|ENSMUSG00000033763.15|MTSS I-BAR domain containing 2
mm39_v1_chr6_-_100264439_100264461	1.19014	CAGUGCA	ENSMUST00000101118.4|Rybp|ENSMUSG00000072872.4|RING1 and YY1 binding protein
mm39_v1_chr19_+_41471067_41471128	1.18603	CAGUGCA	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr16_+_42727926_42728047	1.18209	CAGUGCA	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr11_-_106811507_106811599	1.17247	CAGUGCA	ENSMUST00000103067.10|Smurf2|ENSMUSG00000018363.17|SMAD specific E3 ubiquitin protein ligase 2
mm39_v1_chr7_-_80338600_80338690	1.17021	CAGUGCA	ENSMUST00000122255.8|Crtc3|ENSMUSG00000030527.16|CREB regulated transcription coactivator 3
mm39_v1_chr10_+_107998219_107998269	1.15638	CAGUGCA	ENSMUST00000070663.6|Ppp1r12a|ENSMUSG00000019907.11|protein phosphatase 1, regulatory subunit 12A
mm39_v1_chr15_+_80595486_80595541	1.15277	CAGUGCA	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chrX_-_160942713_160942728	1.14593	CAGUGCA	ENSMUST00000087085.10|Nhs|ENSMUSG00000059493.14|NHS actin remodeling regulator
mm39_v1_chr8_+_96078886_96078957	1.13412	CAGUGCA	ENSMUST00000034243.7|Mmp15|ENSMUSG00000031790.9|matrix metallopeptidase 15
mm39_v1_chr11_-_76737794_76737871	1.13356	CAGUGCA	ENSMUST00000021201.6|Cpd|ENSMUSG00000020841.6|carboxypeptidase D
mm39_v1_chr14_-_75185281_75185324	1.12261	CAGUGCA	ENSMUST00000088970.7|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1	ENSMUST00000228252.2|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1
mm39_v1_chr2_-_132420074_132420153	1.12169	CAGUGCA	ENSMUST00000110136.8|Gpcpd1|ENSMUSG00000027346.16|glycerophosphocholine phosphodiesterase 1	ENSMUST00000124107.8|Gpcpd1|ENSMUSG00000027346.16|glycerophosphocholine phosphodiesterase 1	ENSMUST00000060955.12|Gpcpd1|ENSMUSG00000027346.16|glycerophosphocholine phosphodiesterase 1
mm39_v1_chr3_+_151916059_151916102	1.11385	CAGUGCA	ENSMUST00000166984.8|Fubp1|ENSMUSG00000028034.16|far upstream element (FUSE) binding protein 1
mm39_v1_chr14_+_32321341_32321498	1.10129	CAGUGCA	ENSMUST00000187377.7|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1	ENSMUST00000189022.8|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1	ENSMUST00000186452.7|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1
mm39_v1_chr16_-_50252703_50252772	1.0961	CAGUGCA	ENSMUST00000066037.13|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089399.11|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089404.10|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000138166.8|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing
mm39_v1_chr19_-_32365862_32365912	1.09596	CAGUGCA	ENSMUST00000099514.10|Sgms1|ENSMUSG00000040451.19|sphingomyelin synthase 1
mm39_v1_chr1_+_159871943_159872024	1.08833	CAGUGCA	ENSMUST00000163892.8|4930523C07Rik|ENSMUSG00000090394.9|RIKEN cDNA 4930523C07 gene
mm39_v1_chr13_-_56283331_56283444	1.07956	CAGUGCA	ENSMUST00000045788.9|Macroh2a1|ENSMUSG00000015937.16|macroH2A.1 histone	ENSMUST00000016081.13|Macroh2a1|ENSMUSG00000015937.16|macroH2A.1 histone
mm39_v1_chr3_-_84489783_84489841	1.07401	CAGUGCA	ENSMUST00000107687.9|Arfip1|ENSMUSG00000074513.10|ADP-ribosylation factor interacting protein 1	ENSMUST00000098990.10|Arfip1|ENSMUSG00000074513.10|ADP-ribosylation factor interacting protein 1
mm39_v1_chr19_-_11796282_11796329	1.07085	CAGUGCA	ENSMUST00000069285.6|Stx3|ENSMUSG00000041488.17|syntaxin 3
mm39_v1_chr3_+_89344006_89344068	1.06879	CAGUGCA	ENSMUST00000038942.10|Pbxip1|ENSMUSG00000042613.10|pre B cell leukemia transcription factor interacting protein 1	ENSMUST00000130858.8|Pbxip1|ENSMUSG00000042613.10|pre B cell leukemia transcription factor interacting protein 1	ENSMUST00000146630.8|Pbxip1|ENSMUSG00000042613.10|pre B cell leukemia transcription factor interacting protein 1	ENSMUST00000145753.2|Pbxip1|ENSMUSG00000042613.10|pre B cell leukemia transcription factor interacting protein 1
mm39_v1_chr13_-_38178059_38178193	1.06658	CAGUGCA	ENSMUST00000225319.2|Ssr1|ENSMUSG00000021427.11|signal sequence receptor, alpha	ENSMUST00000225246.2|Ssr1|ENSMUSG00000021427.11|signal sequence receptor, alpha	ENSMUST00000021864.8|Ssr1|ENSMUSG00000021427.11|signal sequence receptor, alpha
mm39_v1_chr10_-_71121083_71121094	1.06544	CAGUGCA	ENSMUST00000020085.7|Ube2d1|ENSMUSG00000019927.7|ubiquitin-conjugating enzyme E2D 1
mm39_v1_chr7_+_73025243_73025299	1.0391	CAGUGCA	ENSMUST00000119206.3|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A	ENSMUST00000094312.12|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A
mm39_v1_chr7_-_4661980_4662031	1.02943	CAGUGCA	ENSMUST00000205374.2|Ppp6r1|ENSMUSG00000052296.8|protein phosphatase 6, regulatory subunit 1	ENSMUST00000064099.8|Ppp6r1|ENSMUSG00000052296.8|protein phosphatase 6, regulatory subunit 1
mm39_v1_chr15_+_81469538_81469598	1.02811	CAGUGCA	ENSMUST00000068387.11|Ep300|ENSMUSG00000055024.13|E1A binding protein p300
mm39_v1_chr4_-_133746138_133746152	1.02804	CAGUGCA	ENSMUST00000051674.3|Lin28a|ENSMUSG00000050966.10|lin-28 homolog A (C. elegans)
mm39_v1_chr4_-_126362372_126362446	1.01013	CAGUGCA	ENSMUST00000097888.10|Ago1|ENSMUSG00000041530.18|argonaute RISC catalytic subunit 1	ENSMUST00000239399.2|Ago1|ENSMUSG00000041530.18|argonaute RISC catalytic subunit 1
mm39_v1_chr5_+_88868714_88868734	1.00897	CAGUGCA	ENSMUST00000113229.8|Mob1b|ENSMUSG00000006262.16|MOB kinase activator 1B	ENSMUST00000006424.8|Mob1b|ENSMUSG00000006262.16|MOB kinase activator 1B
mm39_v1_chr4_-_126427234_126427272	1.00644	CAGUGCA	ENSMUST00000084289.5|Ago4|ENSMUSG00000042500.12|argonaute RISC catalytic subunit 4
mm39_v1_chr5_-_137101108_137101131	0.999112	CAGUGCA	ENSMUST00000077523.4|Serpine1|ENSMUSG00000037411.11|serine (or cysteine) peptidase inhibitor, clade E, member 1	ENSMUST00000041388.11|Serpine1|ENSMUSG00000037411.11|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm39_v1_chr10_+_110581293_110581433	0.998101	CAGUGCA	ENSMUST00000174857.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000073781.12|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173471.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173634.2|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7
mm39_v1_chr14_+_34395845_34395890	0.997031	CAGUGCA	ENSMUST00000048263.14|Wapl|ENSMUSG00000041408.19|WAPL cohesin release factor
mm39_v1_chr13_+_55357585_55357602	0.995282	CAGUGCA	ENSMUST00000224973.2|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1	ENSMUST00000099490.3|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1
mm39_v1_chr11_+_69792642_69792720	0.962182	CAGUGCA	ENSMUST00000177138.8|Neurl4|ENSMUSG00000047284.15|neuralized E3 ubiquitin protein ligase 4	ENSMUST00000108617.10|Neurl4|ENSMUSG00000047284.15|neuralized E3 ubiquitin protein ligase 4	ENSMUST00000177476.8|Neurl4|ENSMUSG00000047284.15|neuralized E3 ubiquitin protein ligase 4	ENSMUST00000061837.11|Neurl4|ENSMUSG00000047284.15|neuralized E3 ubiquitin protein ligase 4
mm39_v1_chr19_+_36903471_36903541	0.961873	CAGUGCA	ENSMUST00000099494.4|Btaf1|ENSMUSG00000040565.9|B-TFIID TATA-box binding protein associated factor 1
mm39_v1_chr15_-_99670276_99670343	0.946098	CAGUGCA	ENSMUST00000109035.11|Cers5|ENSMUSG00000023021.16|ceramide synthase 5
mm39_v1_chr14_-_32907023_32907057	0.943929	CAGUGCA	ENSMUST00000130509.10|Wdfy4|ENSMUSG00000051506.18|WD repeat and FYVE domain containing 4	ENSMUST00000061753.15|Wdfy4|ENSMUSG00000051506.18|WD repeat and FYVE domain containing 4
mm39_v1_chr1_+_92838479_92838505	0.931129	CAGUGCA	ENSMUST00000027487.15|Rnpepl1|ENSMUSG00000026269.15|arginyl aminopeptidase (aminopeptidase B)-like 1
mm39_v1_chr6_-_71417607_71417630	0.914792	CAGUGCA	ENSMUST00000002292.15|Rmnd5a|ENSMUSG00000002222.15|required for meiotic nuclear division 5 homolog A
mm39_v1_chr18_-_61533434_61533520	0.909776	CAGUGCA	ENSMUST00000063307.6|Ppargc1b|ENSMUSG00000033871.15|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	ENSMUST00000075299.13|Ppargc1b|ENSMUSG00000033871.15|peroxisome proliferative activated receptor, gamma, coactivator 1 beta
mm39_v1_chr9_+_15217548_15217625	0.905061	CAGUGCA	ENSMUST00000215124.2|Taf1d|ENSMUSG00000031939.17|TATA-box binding protein associated factor, RNA polymerase I, D	ENSMUST00000164079.9|Taf1d|ENSMUSG00000031939.17|TATA-box binding protein associated factor, RNA polymerase I, D	ENSMUST00000216109.2|Taf1d|ENSMUSG00000031939.17|TATA-box binding protein associated factor, RNA polymerase I, D
mm39_v1_chr7_+_24335969_24335989	0.877669	CAGUGCA	ENSMUST00000080718.6|Lypd3|ENSMUSG00000057454.6|Ly6/Plaur domain containing 3
mm39_v1_chr10_-_110845860_110845927	0.86726	CAGUGCA	ENSMUST00000041723.15|Zdhhc17|ENSMUSG00000035798.15|zinc finger, DHHC domain containing 17
mm39_v1_chr5_+_146168020_146168195	0.855676	CAGUGCA	ENSMUST00000161181.8|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000161652.8|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000031640.15|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000159467.2|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8
mm39_v1_chr12_+_24881582_24881657	0.847104	CAGUGCA	ENSMUST00000221952.2|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2	ENSMUST00000078902.8|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2	ENSMUST00000110942.11|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2
mm39_v1_chr6_-_72935468_72935479	0.840974	CAGUGCA	ENSMUST00000114050.8|Tmsb10|ENSMUSG00000079523.9|thymosin, beta 10
mm39_v1_chr12_-_73160181_73160230	0.822765	CAGUGCA	ENSMUST00000043208.8|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4	ENSMUST00000175693.3|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4
mm39_v1_chr17_-_66826661_66826724	0.814669	CAGUGCA	ENSMUST00000167962.2|Rab12|ENSMUSG00000023460.14|RAB12, member RAS oncogene family	ENSMUST00000070538.12|Rab12|ENSMUSG00000023460.14|RAB12, member RAS oncogene family
mm39_v1_chr2_+_167774247_167774300	0.796974	CAGUGCA	ENSMUST00000029053.8|Ptpn1|ENSMUSG00000027540.14|protein tyrosine phosphatase, non-receptor type 1
mm39_v1_chr13_+_44884740_44884752	0.796657	CAGUGCA	ENSMUST00000173246.8|Jarid2|ENSMUSG00000038518.16|jumonji, AT rich interactive domain 2
mm39_v1_chr6_-_72357398_72357472	0.791495	CAGUGCA	ENSMUST00000101285.10|Vamp5|ENSMUSG00000073002.10|vesicle-associated membrane protein 5	ENSMUST00000074231.6|Vamp5|ENSMUSG00000073002.10|vesicle-associated membrane protein 5
mm39_v1_chr9_+_30941924_30941997	0.779165	CAGUGCA	ENSMUST00000216649.2|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44	ENSMUST00000115222.10|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44
mm39_v1_chr7_+_132532841_132532871	0.778458	CAGUGCA	ENSMUST00000106157.8|Zranb1|ENSMUSG00000030967.16|zinc finger, RAN-binding domain containing 1
mm39_v1_chr18_+_69478790_69478882	0.776121	CAGUGCA	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chrX_-_52459347_52459379	0.757303	CAGUGCA	ENSMUST00000096447.9|Mospd1|ENSMUSG00000023074.12|motile sperm domain containing 1	ENSMUST00000023836.4|Mospd1|ENSMUSG00000023074.12|motile sperm domain containing 1
mm39_v1_chr17_-_88372671_88372719	0.750791	CAGUGCA	ENSMUST00000235112.2|Fbxo11|ENSMUSG00000005371.16|F-box protein 11	ENSMUST00000005504.15|Fbxo11|ENSMUSG00000005371.16|F-box protein 11
mm39_v1_chr2_-_119308094_119308186	0.747933	CAGUGCA	ENSMUST00000110808.2|Ino80|ENSMUSG00000034154.16|INO80 complex subunit	ENSMUST00000049920.14|Ino80|ENSMUSG00000034154.16|INO80 complex subunit
mm39_v1_chr19_+_37423198_37423272	0.74154	CAGUGCA	ENSMUST00000025944.9|Hhex|ENSMUSG00000024986.13|hematopoietically expressed homeobox
mm39_v1_chr4_+_86666764_86666797	0.739313	CAGUGCA	ENSMUST00000045512.15|Dennd4c|ENSMUSG00000038024.18|DENN/MADD domain containing 4C	ENSMUST00000082026.14|Dennd4c|ENSMUSG00000038024.18|DENN/MADD domain containing 4C
mm39_v1_chr1_+_82817170_82817239	0.735244	CAGUGCA	ENSMUST00000189220.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000113444.8|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr3_-_9675130_9675146	0.734607	CAGUGCA	ENSMUST00000041124.13|Zfp704|ENSMUSG00000040209.13|zinc finger protein 704
mm39_v1_chr11_+_94881861_94881916	0.730508	CAGUGCA	ENSMUST00000038696.12|Ppp1r9b|ENSMUSG00000038976.13|protein phosphatase 1, regulatory subunit 9B
mm39_v1_chr2_-_104324745_104324809	0.730066	CAGUGCA	ENSMUST00000028600.14|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr12_-_69728572_69728632	0.724225	CAGUGCA	ENSMUST00000183277.8|Sos2|ENSMUSG00000034801.14|SOS Ras/Rho guanine nucleotide exchange factor 2	ENSMUST00000035773.14|Sos2|ENSMUSG00000034801.14|SOS Ras/Rho guanine nucleotide exchange factor 2
mm39_v1_chr7_-_34089109_34089120	0.718909	CAGUGCA	ENSMUST00000085585.12|Lsm14a|ENSMUSG00000066568.13|LSM14A mRNA processing body assembly factor
mm39_v1_chr8_+_80366247_80366333	0.718011	CAGUGCA	ENSMUST00000173078.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4	ENSMUST00000173286.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4
mm39_v1_chr18_+_78392969_78392969	0.709316	CAGUGCA	ENSMUST00000164064.2|Gm6133|ENSMUSG00000090451.2|predicted gene 6133
mm39_v1_chr11_-_104333059_104333117	0.708506	CAGUGCA	ENSMUST00000106977.8|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1	ENSMUST00000106972.8|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1
mm39_v1_chr7_+_89779564_89779724	0.7004	CAGUGCA	ENSMUST00000208742.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein	ENSMUST00000049537.9|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chr5_-_68004743_68004781	0.700283	CAGUGCA	ENSMUST00000072971.13|Atp8a1|ENSMUSG00000037685.16|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	ENSMUST00000113652.8|Atp8a1|ENSMUSG00000037685.16|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	ENSMUST00000113651.8|Atp8a1|ENSMUSG00000037685.16|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	ENSMUST00000037380.15|Atp8a1|ENSMUSG00000037685.16|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm39_v1_chr19_-_18609118_18609190	0.681958	CAGUGCA	ENSMUST00000025631.7|Ostf1|ENSMUSG00000024725.14|osteoclast stimulating factor 1	ENSMUST00000236615.2|Ostf1|ENSMUSG00000024725.14|osteoclast stimulating factor 1
mm39_v1_chr11_-_20781009_20781056	0.65358	CAGUGCA	ENSMUST00000047028.9|Lgalsl|ENSMUSG00000042363.15|lectin, galactoside binding-like
mm39_v1_chr19_+_32734884_32734900	0.653115	CAGUGCA	ENSMUST00000013807.8|Pten|ENSMUSG00000013663.8|phosphatase and tensin homolog
mm39_v1_chr2_+_156681927_156681952	0.651767	CAGUGCA	ENSMUST00000081335.13|Tgif2|ENSMUSG00000062175.14|TGFB-induced factor homeobox 2
mm39_v1_chr8_-_120828211_120828246	0.642021	CAGUGCA	ENSMUST00000034280.9|Zdhhc7|ENSMUSG00000031823.15|zinc finger, DHHC domain containing 7
mm39_v1_chr1_-_37580084_37580128	0.640331	CAGUGCA	ENSMUST00000151952.8|Mgat4a|ENSMUSG00000026110.16|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm39_v1_chr5_+_135197137_135197227	0.636996	CAGUGCA	ENSMUST00000031692.12|Bcl7b|ENSMUSG00000029681.13|B cell CLL/lymphoma 7B
mm39_v1_chr19_+_11889752_11889839	0.628738	CAGUGCA	ENSMUST00000061618.9|Patl1|ENSMUSG00000046139.9|protein associated with topoisomerase II homolog 1 (yeast)
mm39_v1_chr7_+_111622675_111622775	0.611277	CAGUGCA	ENSMUST00000106653.4|Usp47|ENSMUSG00000059263.10|ubiquitin specific peptidase 47	ENSMUST00000215510.2|Usp47|ENSMUSG00000059263.10|ubiquitin specific peptidase 47	ENSMUST00000210309.2|Usp47|ENSMUSG00000059263.10|ubiquitin specific peptidase 47
mm39_v1_chr4_+_65042411_65042411	0.608589	CAGUGCA	ENSMUST00000084501.4|Pappa|ENSMUSG00000028370.8|pregnancy-associated plasma protein A
mm39_v1_chr10_+_67373691_67373760	0.597196	CAGUGCA	ENSMUST00000048289.14|Egr2|ENSMUSG00000037868.16|early growth response 2	ENSMUST00000130933.2|Egr2|ENSMUSG00000037868.16|early growth response 2	ENSMUST00000105438.9|Egr2|ENSMUSG00000037868.16|early growth response 2	ENSMUST00000146986.2|Egr2|ENSMUSG00000037868.16|early growth response 2
mm39_v1_chr6_-_91450486_91450534	0.573046	CAGUGCA	ENSMUST00000040835.9|Chchd4|ENSMUSG00000034203.9|coiled-coil-helix-coiled-coil-helix domain containing 4
mm39_v1_chr4_+_59189239_59189257	0.563424	CAGUGCA	ENSMUST00000030074.8|Ugcg|ENSMUSG00000028381.9|UDP-glucose ceramide glucosyltransferase
mm39_v1_chrX_-_107877909_107877987	0.560462	CAGUGCA	ENSMUST00000101283.4|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3	ENSMUST00000150434.8|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3
mm39_v1_chr5_-_73805063_73805133	0.558424	CAGUGCA	ENSMUST00000081170.9|Sgcb|ENSMUSG00000029156.12|sarcoglycan, beta (dystrophin-associated glycoprotein)
mm39_v1_chr13_-_46118433_46118477	0.544674	CAGUGCA	ENSMUST00000167708.4|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000091628.11|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000180110.9|Atxn1|ENSMUSG00000046876.17|ataxin 1
mm39_v1_chr12_+_4642987_4643091	0.537678	CAGUGCA	ENSMUST00000062580.8|Itsn2|ENSMUSG00000020640.11|intersectin 2	ENSMUST00000220311.2|Itsn2|ENSMUSG00000020640.11|intersectin 2
mm39_v1_chr1_+_105918383_105918450	0.532408	CAGUGCA	ENSMUST00000119166.8|Zcchc2|ENSMUSG00000038866.16|zinc finger, CCHC domain containing 2
mm39_v1_chr9_+_57615816_57615891	0.527513	CAGUGCA	ENSMUST00000043990.14|Edc3|ENSMUSG00000038957.14|enhancer of mRNA decapping 3	ENSMUST00000142807.2|Edc3|ENSMUSG00000038957.14|enhancer of mRNA decapping 3
mm39_v1_chr17_-_33979442_33979504	0.527218	CAGUGCA	ENSMUST00000057373.14|Rab11b|ENSMUSG00000077450.14|RAB11B, member RAS oncogene family
mm39_v1_chr3_-_104960437_104960467	0.524521	CAGUGCA	ENSMUST00000077548.12|Cttnbp2nl|ENSMUSG00000062127.12|CTTNBP2 N-terminal like
mm39_v1_chr1_+_53336229_53336254	0.524465	CAGUGCA	ENSMUST00000027266.4|Ormdl1|ENSMUSG00000026097.10|ORM1-like 1 (S. cerevisiae)
mm39_v1_chr10_+_40225272_40225385	0.523939	CAGUGCA	ENSMUST00000044672.11|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19	ENSMUST00000095743.4|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19
mm39_v1_chr5_-_106606032_106606032	0.505883	CAGUGCA	ENSMUST00000086795.8|Barhl2|ENSMUSG00000034384.12|BarH like homeobox 2
mm39_v1_chr3_-_95189387_95189387	0.487235	CAGUGCA	ENSMUST00000015855.8|Prune1|ENSMUSG00000015711.9|prune exopolyphosphatase
mm39_v1_chr3_-_157742267_157742283	0.479903	CAGUGCA	ENSMUST00000121326.8|Srsf11|ENSMUSG00000055436.19|serine and arginine-rich splicing factor 11
mm39_v1_chr9_+_121196034_121196108	0.474758	CAGUGCA	ENSMUST00000210636.2|Trak1|ENSMUSG00000032536.13|trafficking protein, kinesin binding 1	ENSMUST00000045903.8|Trak1|ENSMUSG00000032536.13|trafficking protein, kinesin binding 1
mm39_v1_chr11_+_121150798_121150881	0.463388	CAGUGCA	ENSMUST00000106113.2|Foxk2|ENSMUSG00000039275.10|forkhead box K2
mm39_v1_chr18_+_44513547_44513644	0.455276	CAGUGCA	ENSMUST00000202306.2|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2	ENSMUST00000025350.10|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2
mm39_v1_chr12_-_104718159_104718211	0.455233	CAGUGCA	ENSMUST00000041987.7|Dicer1|ENSMUSG00000041415.11|dicer 1, ribonuclease type III
mm39_v1_chr18_+_53309388_53309448	0.455155	CAGUGCA	ENSMUST00000037850.7|Snx2|ENSMUSG00000034484.9|sorting nexin 2
mm39_v1_chr10_-_118705029_118705091	0.445734	CAGUGCA	ENSMUST00000004281.10|Dyrk2|ENSMUSG00000028630.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm39_v1_chr17_-_48716756_48716934	0.443585	CAGUGCA	ENSMUST00000160319.8|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000159535.2|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000078800.13|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000046719.14|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000162460.8|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha
mm39_v1_chr5_-_151113619_151113734	0.442695	CAGUGCA	ENSMUST00000062015.15|Stard13|ENSMUSG00000016128.15|StAR-related lipid transfer (START) domain containing 13	ENSMUST00000110483.9|Stard13|ENSMUSG00000016128.15|StAR-related lipid transfer (START) domain containing 13
mm39_v1_chr5_-_36853281_36853386	0.436408	CAGUGCA	ENSMUST00000031091.13|D5Ertd579e|ENSMUSG00000029190.20|DNA segment, Chr 5, ERATO Doi 579, expressed	ENSMUST00000140653.2|D5Ertd579e|ENSMUSG00000029190.20|DNA segment, Chr 5, ERATO Doi 579, expressed
mm39_v1_chr5_-_121974913_121974927	0.42959	CAGUGCA	ENSMUST00000040308.14|Sh2b3|ENSMUSG00000042594.17|SH2B adaptor protein 3	ENSMUST00000086310.8|Sh2b3|ENSMUSG00000042594.17|SH2B adaptor protein 3
mm39_v1_chr3_-_115508680_115508721	0.421533	CAGUGCA	ENSMUST00000055676.4|S1pr1|ENSMUSG00000045092.9|sphingosine-1-phosphate receptor 1
mm39_v1_chr11_+_74540284_74540346	0.41152	CAGUGCA	ENSMUST00000117818.2|Cluh|ENSMUSG00000020741.18|clustered mitochondria (cluA/CLU1) homolog	ENSMUST00000092915.12|Cluh|ENSMUSG00000020741.18|clustered mitochondria (cluA/CLU1) homolog
mm39_v1_chr18_+_76374651_76374804	0.406925	CAGUGCA	ENSMUST00000168423.9|Smad2|ENSMUSG00000024563.17|SMAD family member 2	ENSMUST00000091831.13|Smad2|ENSMUSG00000024563.17|SMAD family member 2
mm39_v1_chr1_-_30912662_30912738	0.403679	CAGUGCA	ENSMUST00000186733.7|Phf3|ENSMUSG00000048874.16|PHD finger protein 3
mm39_v1_chr17_-_24470356_24470383	0.402912	CAGUGCA	ENSMUST00000115390.5|Ccnf|ENSMUSG00000072082.8|cyclin F
mm39_v1_chr11_-_113574981_113575013	0.392077	CAGUGCA	ENSMUST00000120194.2|Fam104a|ENSMUSG00000041629.8|family with sequence similarity 104, member A
mm39_v1_chr9_+_62585108_62585125	0.384538	CAGUGCA	ENSMUST00000034774.9|Itga11|ENSMUSG00000032243.9|integrin alpha 11
mm39_v1_chr7_-_33929708_33929761	0.370169	CAGUGCA	ENSMUST00000038027.6|Gpi1|ENSMUSG00000036427.6|glucose-6-phosphate isomerase 1
mm39_v1_chr19_+_8797330_8797398	0.369649	CAGUGCA	ENSMUST00000096753.5|Hnrnpul2|ENSMUSG00000071659.5|heterogeneous nuclear ribonucleoprotein U-like 2
mm39_v1_chr6_+_145692439_145692504	0.365353	CAGUGCA	ENSMUST00000111704.8|Rassf8|ENSMUSG00000030259.13|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8
mm39_v1_chr9_+_70586232_70586292	0.358979	CAGUGCA	ENSMUST00000067880.13|Adam10|ENSMUSG00000054693.15|a disintegrin and metallopeptidase domain 10
mm39_v1_chr2_-_90900628_90900762	0.357528	CAGUGCA	ENSMUST00000111436.3|Slc39a13|ENSMUSG00000002105.16|solute carrier family 39 (metal ion transporter), member 13	ENSMUST00000073575.12|Slc39a13|ENSMUSG00000002105.16|solute carrier family 39 (metal ion transporter), member 13
mm39_v1_chr11_+_74721733_74721746	0.35013	CAGUGCA	ENSMUST00000000291.9|Mnt|ENSMUSG00000000282.13|max binding protein
mm39_v1_chr10_+_127928622_127928700	0.349314	CAGUGCA	ENSMUST00000219072.2|Baz2a|ENSMUSG00000040054.18|bromodomain adjacent to zinc finger domain, 2A	ENSMUST00000045621.9|Baz2a|ENSMUSG00000040054.18|bromodomain adjacent to zinc finger domain, 2A	ENSMUST00000170054.9|Baz2a|ENSMUSG00000040054.18|bromodomain adjacent to zinc finger domain, 2A
mm39_v1_chr18_-_77801624_77801673	0.334851	CAGUGCA	ENSMUST00000074653.6|8030462N17Rik|ENSMUSG00000047466.11|RIKEN cDNA 8030462N17 gene
mm39_v1_chr13_+_20274708_20274803	0.32469	CAGUGCA	ENSMUST00000072519.7|Elmo1|ENSMUSG00000041112.18|engulfment and cell motility 1
mm39_v1_chr16_+_51851588_51851705	0.319771	CAGUGCA	ENSMUST00000114471.3|Cblb|ENSMUSG00000022637.12|Casitas B-lineage lymphoma b
mm39_v1_chr18_+_62086122_62086192	0.308082	CAGUGCA	ENSMUST00000051720.6|Sh3tc2|ENSMUSG00000045629.9|SH3 domain and tetratricopeptide repeats 2	ENSMUST00000235860.2|Sh3tc2|ENSMUSG00000045629.9|SH3 domain and tetratricopeptide repeats 2
mm39_v1_chr6_+_113284098_113284390	0.305631	CAGUGCA	ENSMUST00000113122.8|Brpf1|ENSMUSG00000001632.17|bromodomain and PHD finger containing, 1	ENSMUST00000204198.3|Brpf1|ENSMUSG00000001632.17|bromodomain and PHD finger containing, 1	ENSMUST00000113121.8|Brpf1|ENSMUSG00000001632.17|bromodomain and PHD finger containing, 1	ENSMUST00000113119.8|Brpf1|ENSMUSG00000001632.17|bromodomain and PHD finger containing, 1	ENSMUST00000113117.4|Brpf1|ENSMUSG00000001632.17|bromodomain and PHD finger containing, 1	ENSMUST00000204626.3|Brpf1|ENSMUSG00000001632.17|bromodomain and PHD finger containing, 1	ENSMUST00000203577.2|Brpf1|ENSMUSG00000001632.17|bromodomain and PHD finger containing, 1
mm39_v1_chrX_-_156275231_156275283	0.305496	CAGUGCA	ENSMUST00000112529.8|Sms|ENSMUSG00000071708.12|spermine synthase
mm39_v1_chr1_+_192855776_192855938	0.301548	CAGUGCA	ENSMUST00000161235.3|A130010J15Rik|ENSMUSG00000079144.8|RIKEN cDNA A130010J15 gene	ENSMUST00000160077.2|A130010J15Rik|ENSMUSG00000079144.8|RIKEN cDNA A130010J15 gene	ENSMUST00000178744.2|A130010J15Rik|ENSMUSG00000079144.8|RIKEN cDNA A130010J15 gene	ENSMUST00000192189.2|A130010J15Rik|ENSMUSG00000079144.8|RIKEN cDNA A130010J15 gene	ENSMUST00000110831.4|A130010J15Rik|ENSMUSG00000079144.8|RIKEN cDNA A130010J15 gene	ENSMUST00000191613.2|A130010J15Rik|ENSMUSG00000079144.8|RIKEN cDNA A130010J15 gene
mm39_v1_chr2_+_103254401_103254421	0.29383	CAGUGCA	ENSMUST00000028609.14|Elf5|ENSMUSG00000027186.16|E74-like factor 5
mm39_v1_chr5_-_115479203_115479270	0.290961	CAGUGCA	ENSMUST00000139167.3|Gatc|ENSMUSG00000029536.9|glutamyl-tRNA(Gln) amidotransferase, subunit C
mm39_v1_chr11_+_120123727_120123779	0.289623	CAGUGCA	ENSMUST00000122148.8|Bahcc1|ENSMUSG00000039741.16|BAH domain and coiled-coil containing 1	ENSMUST00000044985.14|Bahcc1|ENSMUSG00000039741.16|BAH domain and coiled-coil containing 1
mm39_v1_chr18_+_36414122_36414204	0.281259	CAGUGCA	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chr4_+_150938376_150938525	0.274685	CAGUGCA	ENSMUST00000073600.9|Errfi1|ENSMUSG00000028967.11|ERBB receptor feedback inhibitor 1
mm39_v1_chr4_+_62883796_62883854	0.269905	CAGUGCA	ENSMUST00000030043.13|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000107415.8|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000064814.6|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618
mm39_v1_chr1_+_59012680_59012741	0.265869	CAGUGCA	ENSMUST00000114296.8|Stradb|ENSMUSG00000026027.14|STE20-related kinase adaptor beta	ENSMUST00000027185.11|Stradb|ENSMUSG00000026027.14|STE20-related kinase adaptor beta
mm39_v1_chr13_+_55840888_55840964	0.260784	CAGUGCA	ENSMUST00000057844.10|B230219D22Rik|ENSMUSG00000045767.10|RIKEN cDNA B230219D22 gene
mm39_v1_chr7_-_105401398_105401442	0.233494	CAGUGCA	ENSMUST00000033184.6|Tpp1|ENSMUSG00000030894.6|tripeptidyl peptidase I
mm39_v1_chr2_+_126850613_126850680	0.224973	CAGUGCA	ENSMUST00000110394.8|Ap4e1|ENSMUSG00000001998.16|adaptor-related protein complex AP-4, epsilon 1	ENSMUST00000002063.15|Ap4e1|ENSMUSG00000001998.16|adaptor-related protein complex AP-4, epsilon 1
mm39_v1_chr17_-_31877703_31877866	0.223654	CAGUGCA	ENSMUST00000236475.2|U2af1|ENSMUSG00000061613.14|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	ENSMUST00000166526.9|U2af1|ENSMUSG00000061613.14|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	ENSMUST00000014684.6|U2af1|ENSMUSG00000061613.14|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
mm39_v1_chr9_+_59658156_59658205	0.220912	CAGUGCA	ENSMUST00000136740.8|Myo9a|ENSMUSG00000039585.16|myosin IXa	ENSMUST00000135298.8|Myo9a|ENSMUSG00000039585.16|myosin IXa	ENSMUST00000128341.2|Myo9a|ENSMUSG00000039585.16|myosin IXa
mm39_v1_chr4_-_94491473_94491490	0.217259	CAGUGCA	ENSMUST00000107107.9|Plaa|ENSMUSG00000028577.14|phospholipase A2, activating protein
mm39_v1_chr5_-_115296222_115296241	0.216742	CAGUGCA	ENSMUST00000112121.6|Mlec|ENSMUSG00000048578.12|malectin
mm39_v1_chr5_-_62923463_62923615	0.21417	CAGUGCA	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chrX_-_73129195_73129296	0.208769	CAGUGCA	ENSMUST00000140399.3|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000123362.8|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000100750.10|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000033770.13|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2
mm39_v1_chr1_+_156386414_156386619	0.207894	CAGUGCA	ENSMUST00000166172.9|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	ENSMUST00000027888.13|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm39_v1_chr13_-_93636224_93636333	0.195342	CAGUGCA	ENSMUST00000220513.2|Jmy|ENSMUSG00000021690.11|junction-mediating and regulatory protein	ENSMUST00000065537.9|Jmy|ENSMUSG00000021690.11|junction-mediating and regulatory protein
mm39_v1_chr12_-_100691251_100691287	0.192083	CAGUGCA	ENSMUST00000043599.7|Rps6ka5|ENSMUSG00000021180.10|ribosomal protein S6 kinase, polypeptide 5
mm39_v1_chr4_-_132237804_132237820	0.191508	CAGUGCA	ENSMUST00000030724.9|Sesn2|ENSMUSG00000028893.9|sestrin 2
mm39_v1_chr4_+_138700195_138700231	0.185872	CAGUGCA	ENSMUST00000123636.8|Tmco4|ENSMUSG00000041143.17|transmembrane and coiled-coil domains 4	ENSMUST00000043042.10|Tmco4|ENSMUSG00000041143.17|transmembrane and coiled-coil domains 4	ENSMUST00000050949.9|Tmco4|ENSMUSG00000041143.17|transmembrane and coiled-coil domains 4
mm39_v1_chr3_-_89959739_89959769	0.185543	CAGUGCA	ENSMUST00000199929.2|Ubap2l|ENSMUSG00000042520.17|ubiquitin-associated protein 2-like	ENSMUST00000090908.11|Ubap2l|ENSMUSG00000042520.17|ubiquitin-associated protein 2-like	ENSMUST00000198322.5|Ubap2l|ENSMUSG00000042520.17|ubiquitin-associated protein 2-like	ENSMUST00000196843.5|Ubap2l|ENSMUSG00000042520.17|ubiquitin-associated protein 2-like
mm39_v1_chr9_-_48747232_48747262	0.181937	CAGUGCA	ENSMUST00000093852.5|Zbtb16|ENSMUSG00000066687.6|zinc finger and BTB domain containing 16
mm39_v1_chr1_-_97589675_97589799	0.17551	CAGUGCA	ENSMUST00000053033.14|Macir|ENSMUSG00000044768.17|macrophage immunometabolism regulator	ENSMUST00000149927.2|Macir|ENSMUSG00000044768.17|macrophage immunometabolism regulator
mm39_v1_chr8_+_112667328_112667341	0.17519	CAGUGCA	ENSMUST00000034428.8|Gabarapl2|ENSMUSG00000031950.8|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2
mm39_v1_chr5_+_115769960_115769992	0.173512	CAGUGCA	ENSMUST00000031492.15|Rab35|ENSMUSG00000029518.16|RAB35, member RAS oncogene family
mm39_v1_chr5_+_33978035_33978173	0.172126	CAGUGCA	ENSMUST00000075812.11|Nsd2|ENSMUSG00000057406.17|nuclear receptor binding SET domain protein 2	ENSMUST00000114397.9|Nsd2|ENSMUSG00000057406.17|nuclear receptor binding SET domain protein 2	ENSMUST00000155880.8|Nsd2|ENSMUSG00000057406.17|nuclear receptor binding SET domain protein 2
mm39_v1_chr8_+_105951777_105951827	0.158143	CAGUGCA	ENSMUST00000034361.10|D230025D16Rik|ENSMUSG00000031889.10|RIKEN cDNA D230025D16 gene
mm39_v1_chr19_-_29625755_29625825	0.149899	CAGUGCA	ENSMUST00000159692.8|Ermp1|ENSMUSG00000046324.13|endoplasmic reticulum metallopeptidase 1
mm39_v1_chr11_-_120515799_120515840	0.149835	CAGUGCA	ENSMUST00000106183.3|Sirt7|ENSMUSG00000025138.15|sirtuin 7	ENSMUST00000080202.12|Sirt7|ENSMUSG00000025138.15|sirtuin 7
mm39_v1_chr9_+_106048116_106048153	0.143659	CAGUGCA	ENSMUST00000020490.13|Wdr82|ENSMUSG00000020257.14|WD repeat domain containing 82
mm39_v1_chr13_-_93328719_93328835	0.122279	CAGUGCA	ENSMUST00000048702.7|Tent2|ENSMUSG00000042167.7|terminal nucleotidyltransferase 2
mm39_v1_chrX_+_70599524_70599616	0.114778	CAGUGCA	ENSMUST00000072699.13|Hmgb3|ENSMUSG00000015217.12|high mobility group box 3	ENSMUST00000114582.9|Hmgb3|ENSMUSG00000015217.12|high mobility group box 3	ENSMUST00000015361.11|Hmgb3|ENSMUSG00000015217.12|high mobility group box 3	ENSMUST00000088874.10|Hmgb3|ENSMUSG00000015217.12|high mobility group box 3
mm39_v1_chr10_+_127919142_127919183	0.112437	CAGUGCA	ENSMUST00000026459.6|Atp5b|ENSMUSG00000025393.13|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm39_v1_chr10_+_21171878_21171957	0.094985	CAGUGCA	ENSMUST00000020153.10|Hbs1l|ENSMUSG00000019977.17|Hbs1-like (S. cerevisiae)	ENSMUST00000218032.2|Hbs1l|ENSMUSG00000019977.17|Hbs1-like (S. cerevisiae)	ENSMUST00000061324.6|Hbs1l|ENSMUSG00000019977.17|Hbs1-like (S. cerevisiae)	ENSMUST00000219915.2|Hbs1l|ENSMUSG00000019977.17|Hbs1-like (S. cerevisiae)	ENSMUST00000092674.14|Hbs1l|ENSMUSG00000019977.17|Hbs1-like (S. cerevisiae)	ENSMUST00000218714.2|Hbs1l|ENSMUSG00000019977.17|Hbs1-like (S. cerevisiae)
mm39_v1_chr13_-_18118736_18118824	0.0908006	CAGUGCA	ENSMUST00000009003.9|Rala|ENSMUSG00000008859.9|v-ral simian leukemia viral oncogene A (ras related)
mm39_v1_chr1_-_9770434_9770554	0.0859422	CAGUGCA	ENSMUST00000088658.11|Mybl1|ENSMUSG00000025912.17|myeloblastosis oncogene-like 1
mm39_v1_chr7_+_28834350_28834390	0.0697375	CAGUGCA	ENSMUST00000159975.8|Rasgrp4|ENSMUSG00000030589.16|RAS guanyl releasing protein 4	ENSMUST00000094617.11|Rasgrp4|ENSMUSG00000030589.16|RAS guanyl releasing protein 4	ENSMUST00000032811.12|Rasgrp4|ENSMUSG00000030589.16|RAS guanyl releasing protein 4
mm39_v1_chr4_+_14864076_14864147	0.0694193	CAGUGCA	ENSMUST00000029875.4|Pip4p2|ENSMUSG00000028221.4|phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
mm39_v1_chr1_+_187730018_187730031	0.0595629	CAGUGCA	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr8_+_91555449_91555470	0.0544901	CAGUGCA	ENSMUST00000109614.9|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr7_-_132454332_132454402	0.0470661	CAGUGCA	ENSMUST00000120425.8|Eef1akmt2|ENSMUSG00000030960.17|EEF1A lysine methyltransferase 2	ENSMUST00000033257.15|Eef1akmt2|ENSMUSG00000030960.17|EEF1A lysine methyltransferase 2
mm39_v1_chr1_-_132953068_132953154	0.0420124	CAGUGCA	ENSMUST00000186617.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067429.10|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067398.13|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000188090.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4
mm39_v1_chr9_-_13738304_13738425	0.0382435	CAGUGCA	ENSMUST00000148086.8|Cep57|ENSMUSG00000031922.13|centrosomal protein 57	ENSMUST00000034398.12|Cep57|ENSMUSG00000031922.13|centrosomal protein 57
mm39_v1_chr9_+_57496725_57496766	0.0370481	CAGUGCA	ENSMUST00000053230.7|Ulk3|ENSMUSG00000032308.10|unc-51-like kinase 3
mm39_v1_chr7_-_119494918_119494975	0.0261283	CAGUGCA	ENSMUST00000059851.14|Dcun1d3|ENSMUSG00000048787.14|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm39_v1_chr4_+_136038263_136038296	0.0254008	CAGUGCA	ENSMUST00000105850.8|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R	ENSMUST00000148843.10|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr4_+_109137462_109137513	0.0180619	CAGUGCA	ENSMUST00000102729.10|Eps15|ENSMUSG00000028552.14|epidermal growth factor receptor pathway substrate 15
mm39_v1_chr8_-_85526653_85526912	0.0151534	CAGUGCA	ENSMUST00000126806.2|Nfix|ENSMUSG00000001911.17|nuclear factor I/X	ENSMUST00000076715.13|Nfix|ENSMUSG00000001911.17|nuclear factor I/X
mm39_v1_chr7_-_141649003_141649043	0.0132681	CAGUGCA	ENSMUST00000039926.10|Dusp8|ENSMUSG00000037887.12|dual specificity phosphatase 8
mm39_v1_chr16_+_35803674_35803765	0.00938361	CAGUGCA	ENSMUST00000004054.13|Kpna1|ENSMUSG00000022905.13|karyopherin (importin) alpha 1
mm39_v1_chr3_-_107667499_107667572	0.00884492	CAGUGCA	ENSMUST00000153114.2|Csf1|ENSMUSG00000014599.11|colony stimulating factor 1 (macrophage)	ENSMUST00000118593.8|Csf1|ENSMUSG00000014599.11|colony stimulating factor 1 (macrophage)	ENSMUST00000120243.8|Csf1|ENSMUSG00000014599.11|colony stimulating factor 1 (macrophage)
