mm39_v1_chr10_-_117681864_117681940	1.27859	CCACAGG	ENSMUST00000064667.9|Rap1b|ENSMUSG00000052681.9|RAS related protein 1b
mm39_v1_chr5_+_140593075_140593107	1.11226	CCACAGG	ENSMUST00000031555.3|Lfng|ENSMUSG00000029570.6|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm39_v1_chr17_+_75312520_75312563	1.05204	CCACAGG	ENSMUST00000234490.2|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1	ENSMUST00000001927.12|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1
mm39_v1_chr1_-_128520002_128520055	0.738014	CCACAGG	ENSMUST00000052172.7|Cxcr4|ENSMUSG00000045382.7|chemokine (C-X-C motif) receptor 4	ENSMUST00000142893.2|Cxcr4|ENSMUSG00000045382.7|chemokine (C-X-C motif) receptor 4
mm39_v1_chr11_+_116089678_116089729	0.701302	CCACAGG	ENSMUST00000021130.7|Ten1|ENSMUSG00000020778.13|TEN1 telomerase capping complex subunit
mm39_v1_chr19_+_38919353_38919364	0.674626	CCACAGG	ENSMUST00000025965.12|Hells|ENSMUSG00000025001.12|helicase, lymphoid specific
mm39_v1_chrX_-_141749704_141749730	0.657396	CCACAGG	ENSMUST00000041317.3|Ammecr1|ENSMUSG00000042225.4|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm39_v1_chr10_+_42736345_42736373	0.654983	CCACAGG	ENSMUST00000063063.14|Scml4|ENSMUSG00000044770.15|Scm polycomb group protein like 4
mm39_v1_chr2_+_71617266_71617322	0.620352	CCACAGG	ENSMUST00000112101.8|Itga6|ENSMUSG00000027111.17|integrin alpha 6	ENSMUST00000028522.10|Itga6|ENSMUSG00000027111.17|integrin alpha 6
mm39_v1_chr17_-_52139693_52139706	0.618109	CCACAGG	ENSMUST00000144331.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr1_+_172327569_172327614	0.591266	CCACAGG	ENSMUST00000111230.8|Tagln2|ENSMUSG00000026547.16|transgelin 2
mm39_v1_chr17_+_28426752_28426830	0.558321	CCACAGG	ENSMUST00000002327.6|Def6|ENSMUSG00000002257.9|differentially expressed in FDCP 6	ENSMUST00000233560.2|Def6|ENSMUSG00000002257.9|differentially expressed in FDCP 6	ENSMUST00000233958.2|Def6|ENSMUSG00000002257.9|differentially expressed in FDCP 6	ENSMUST00000233170.2|Def6|ENSMUSG00000002257.9|differentially expressed in FDCP 6
mm39_v1_chr13_+_104424359_104424432	0.552009	CCACAGG	ENSMUST00000065766.7|Adamts6|ENSMUSG00000046169.11|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm39_v1_chr15_+_103148824_103148921	0.549981	CCACAGG	ENSMUST00000036004.16|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1	ENSMUST00000087351.9|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1	ENSMUST00000231141.2|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1
mm39_v1_chr9_+_15217548_15217625	0.549168	CCACAGG	ENSMUST00000215124.2|Taf1d|ENSMUSG00000031939.17|TATA-box binding protein associated factor, RNA polymerase I, D	ENSMUST00000164079.9|Taf1d|ENSMUSG00000031939.17|TATA-box binding protein associated factor, RNA polymerase I, D	ENSMUST00000216109.2|Taf1d|ENSMUSG00000031939.17|TATA-box binding protein associated factor, RNA polymerase I, D
mm39_v1_chr17_+_48761916_48761936	0.532701	CCACAGG	ENSMUST00000074574.13|Unc5cl|ENSMUSG00000043592.16|unc-5 family C-terminal like
mm39_v1_chr13_+_13612136_13612136	0.528691	CCACAGG	ENSMUST00000005532.9|Nid1|ENSMUSG00000005397.9|nidogen 1
mm39_v1_chr6_-_52211882_52211940	0.519549	CCACAGG	ENSMUST00000125581.2|Hoxa10|ENSMUSG00000000938.12|homeobox A10
mm39_v1_chr5_-_107437427_107437514	0.516009	CCACAGG	ENSMUST00000031224.15|Tgfbr3|ENSMUSG00000029287.15|transforming growth factor, beta receptor III
mm39_v1_chr8_+_73072877_73072915	0.468552	CCACAGG	ENSMUST00000067912.8|Klf2|ENSMUSG00000055148.8|Kruppel-like factor 2 (lung)
mm39_v1_chr13_+_20274708_20274803	0.466332	CCACAGG	ENSMUST00000072519.7|Elmo1|ENSMUSG00000041112.18|engulfment and cell motility 1
mm39_v1_chr4_-_138820269_138820304	0.436151	CCACAGG	ENSMUST00000042844.7|Nbl1|ENSMUSG00000041120.7|NBL1, DAN family BMP antagonist
mm39_v1_chr14_+_71011744_71011795	0.420093	CCACAGG	ENSMUST00000022698.8|Dok2|ENSMUSG00000022102.14|docking protein 2
mm39_v1_chr2_-_6889783_6889807	0.408154	CCACAGG	ENSMUST00000170438.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114924.10|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114934.11|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr1_-_131025562_131025581	0.40388	CCACAGG	ENSMUST00000016672.11|Mapkapk2|ENSMUSG00000016528.11|MAP kinase-activated protein kinase 2
mm39_v1_chr2_+_127178072_127178086	0.402635	CCACAGG	ENSMUST00000028846.7|Dusp2|ENSMUSG00000027368.7|dual specificity phosphatase 2
mm39_v1_chr2_-_26393826_26393849	0.384866	CCACAGG	ENSMUST00000028288.5|Notch1|ENSMUSG00000026923.16|notch 1
mm39_v1_chr14_-_69740670_69740811	0.370589	CCACAGG	ENSMUST00000180059.3|Gm16867|ENSMUSG00000093954.9|predicted gene, 16867	ENSMUST00000179116.3|Gm16867|ENSMUSG00000093954.9|predicted gene, 16867
mm39_v1_chr7_-_113716996_113717023	0.349696	CCACAGG	ENSMUST00000069449.7|Rras2|ENSMUSG00000055723.7|related RAS viral (r-ras) oncogene 2
mm39_v1_chr10_+_26648473_26648512	0.344756	CCACAGG	ENSMUST00000039557.9|Arhgap18|ENSMUSG00000039031.17|Rho GTPase activating protein 18
mm39_v1_chr17_-_84495364_84495381	0.343782	CCACAGG	ENSMUST00000060366.7|Zfp36l2|ENSMUSG00000045817.9|zinc finger protein 36, C3H type-like 2
mm39_v1_chr12_+_73948143_73948166	0.339876	CCACAGG	ENSMUST00000110461.8|Hif1a|ENSMUSG00000021109.14|hypoxia inducible factor 1, alpha subunit
mm39_v1_chr2_-_163592127_163592159	0.335286	CCACAGG	ENSMUST00000017841.4|Ada|ENSMUSG00000017697.4|adenosine deaminase
mm39_v1_chr8_-_80784619_80784646	0.332931	CCACAGG	ENSMUST00000079038.4|Hhip|ENSMUSG00000064325.5|Hedgehog-interacting protein
mm39_v1_chr13_-_101904662_101904725	0.332342	CCACAGG	ENSMUST00000055518.13|Pik3r1|ENSMUSG00000041417.16|phosphoinositide-3-kinase regulatory subunit 1
mm39_v1_chr7_+_112278520_112278532	0.331441	CCACAGG	ENSMUST00000084705.13|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239442.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239404.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000059768.18|Tead1|ENSMUSG00000055320.19|TEA domain family member 1
mm39_v1_chr8_+_110595216_110595243	0.330508	CCACAGG	ENSMUST00000179721.8|Phlpp2|ENSMUSG00000031732.13|PH domain and leucine rich repeat protein phosphatase 2	ENSMUST00000034175.5|Phlpp2|ENSMUSG00000031732.13|PH domain and leucine rich repeat protein phosphatase 2
mm39_v1_chr4_+_150366028_150366103	0.322972	CCACAGG	ENSMUST00000105682.9|Rere|ENSMUSG00000039852.18|arginine glutamic acid dipeptide (RE) repeats
mm39_v1_chr12_-_21423551_21423594	0.320569	CCACAGG	ENSMUST00000101551.10|Adam17|ENSMUSG00000052593.17|a disintegrin and metallopeptidase domain 17
mm39_v1_chr5_-_149559667_149559678	0.32046	CCACAGG	ENSMUST00000074846.14|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1
mm39_v1_chr19_-_4355983_4356072	0.29884	CCACAGG	ENSMUST00000025791.12|Grk2|ENSMUSG00000024858.15|G protein-coupled receptor kinase 2
mm39_v1_chr9_+_72439496_72439553	0.297911	CCACAGG	ENSMUST00000163401.9|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7	ENSMUST00000093820.10|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7
mm39_v1_chr4_+_137196080_137196124	0.294511	CCACAGG	ENSMUST00000030547.15|Hspg2|ENSMUSG00000028763.19|perlecan (heparan sulfate proteoglycan 2)	ENSMUST00000171332.2|Hspg2|ENSMUSG00000028763.19|perlecan (heparan sulfate proteoglycan 2)
mm39_v1_chr8_+_84441854_84441919	0.29014	CCACAGG	ENSMUST00000172396.8|Ddx39a|ENSMUSG00000005481.19|DEAD box helicase 39a
mm39_v1_chr5_-_115236354_115236354	0.289121	CCACAGG	ENSMUST00000100848.3|Gm10401|ENSMUSG00000072693.3|predicted gene 10401
mm39_v1_chr19_-_14575395_14575451	0.2888	CCACAGG	ENSMUST00000052011.15|Tle4|ENSMUSG00000024642.18|transducin-like enhancer of split 4	ENSMUST00000167776.3|Tle4|ENSMUSG00000024642.18|transducin-like enhancer of split 4
mm39_v1_chr8_-_11362731_11362826	0.288204	CCACAGG	ENSMUST00000033898.10|Col4a1|ENSMUSG00000031502.12|collagen, type IV, alpha 1
mm39_v1_chr4_-_133360749_133360832	0.286621	CCACAGG	ENSMUST00000084238.5|Zdhhc18|ENSMUSG00000037553.15|zinc finger, DHHC domain containing 18
mm39_v1_chr7_-_30312246_30312305	0.27461	CCACAGG	ENSMUST00000006476.6|Upk1a|ENSMUSG00000006313.6|uroplakin 1A
mm39_v1_chr11_-_100861713_100861713	0.273993	CCACAGG	ENSMUST00000060792.6|Cavin1|ENSMUSG00000004044.10|caveolae associated 1
mm39_v1_chr10_+_39608094_39608137	0.273353	CCACAGG	ENSMUST00000019986.13|Rev3l|ENSMUSG00000019841.16|REV3 like, DNA directed polymerase zeta catalytic subunit
mm39_v1_chr11_+_4207557_4207592	0.266328	CCACAGG	ENSMUST00000066283.12|Lif|ENSMUSG00000034394.15|leukemia inhibitory factor
mm39_v1_chr8_-_124621483_124621499	0.264934	CCACAGG	ENSMUST00000034453.6|Acta1|ENSMUSG00000031972.6|actin, alpha 1, skeletal muscle	ENSMUST00000212584.2|Acta1|ENSMUSG00000031972.6|actin, alpha 1, skeletal muscle
mm39_v1_chr2_-_118380149_118380168	0.263695	CCACAGG	ENSMUST00000090219.13|Bmf|ENSMUSG00000040093.17|BCL2 modifying factor
mm39_v1_chr15_-_36609208_36609224	0.260865	CCACAGG	ENSMUST00000001809.15|Pabpc1|ENSMUSG00000022283.16|poly(A) binding protein, cytoplasmic 1
mm39_v1_chr19_-_46033353_46033724	0.257295	CCACAGG	ENSMUST00000026252.14|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000156585.9|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000185355.7|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000152946.8|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1
mm39_v1_chr2_+_49341498_49341571	0.256774	CCACAGG	ENSMUST00000092123.11|Epc2|ENSMUSG00000069495.13|enhancer of polycomb homolog 2
mm39_v1_chr6_+_141194886_141194995	0.254283	CCACAGG	ENSMUST00000043259.10|Pde3a|ENSMUSG00000041741.11|phosphodiesterase 3A, cGMP inhibited
mm39_v1_chr3_-_57559088_57559148	0.254079	CCACAGG	ENSMUST00000160959.8|Commd2|ENSMUSG00000036513.16|COMM domain containing 2
mm39_v1_chr7_-_19556612_19556712	0.25145	CCACAGG	ENSMUST00000120537.8|Bcl3|ENSMUSG00000053175.18|B cell leukemia/lymphoma 3
mm39_v1_chr19_+_53128861_53128880	0.247207	CCACAGG	ENSMUST00000111741.10|Add3|ENSMUSG00000025026.16|adducin 3 (gamma)
mm39_v1_chr1_-_52539395_52539459	0.245637	CCACAGG	ENSMUST00000186764.7|Nab1|ENSMUSG00000002881.15|Ngfi-A binding protein 1
mm39_v1_chr10_-_70995485_70995537	0.242469	CCACAGG	ENSMUST00000014473.6|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1	ENSMUST00000143791.8|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1
mm39_v1_chr13_-_63713549_63713549	0.23843	CCACAGG	ENSMUST00000021921.11|Ptch1|ENSMUSG00000021466.13|patched 1
mm39_v1_chr7_+_122723365_122723446	0.236247	CCACAGG	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr6_-_39183712_39183769	0.229182	CCACAGG	ENSMUST00000002305.9|Kdm7a|ENSMUSG00000042599.9|lysine (K)-specific demethylase 7A
mm39_v1_chr17_-_13211075_13211146	0.227565	CCACAGG	ENSMUST00000159986.8|Wtap|ENSMUSG00000060475.14|Wilms tumour 1-associating protein	ENSMUST00000007007.14|Wtap|ENSMUSG00000060475.14|Wilms tumour 1-associating protein
mm39_v1_chr11_-_104333059_104333117	0.221879	CCACAGG	ENSMUST00000106977.8|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1	ENSMUST00000106972.8|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1
mm39_v1_chr7_-_66077215_66077265	0.219836	CCACAGG	ENSMUST00000015278.15|Aldh1a3|ENSMUSG00000015134.16|aldehyde dehydrogenase family 1, subfamily A3
mm39_v1_chr7_-_100512579_100512653	0.218306	CCACAGG	ENSMUST00000142885.2|Relt|ENSMUSG00000008318.11|RELT tumor necrosis factor receptor	ENSMUST00000008462.11|Relt|ENSMUSG00000008318.11|RELT tumor necrosis factor receptor
mm39_v1_chr2_-_34645241_34645268	0.212869	CCACAGG	ENSMUST00000102800.9|Gapvd1|ENSMUSG00000026867.20|GTPase activating protein and VPS9 domains 1
mm39_v1_chr2_+_118756973_118757035	0.207565	CCACAGG	ENSMUST00000099546.6|Chst14|ENSMUSG00000074916.6|carbohydrate sulfotransferase 14	ENSMUST00000110837.2|Chst14|ENSMUSG00000074916.6|carbohydrate sulfotransferase 14
mm39_v1_chr11_-_75060345_75060345	0.203918	CCACAGG	ENSMUST00000055619.5|Hic1|ENSMUSG00000043099.5|hypermethylated in cancer 1
mm39_v1_chr19_-_56996617_56996660	0.193096	CCACAGG	ENSMUST00000118800.8|Afap1l2|ENSMUSG00000025083.19|actin filament associated protein 1-like 2	ENSMUST00000111584.9|Afap1l2|ENSMUSG00000025083.19|actin filament associated protein 1-like 2	ENSMUST00000122359.8|Afap1l2|ENSMUSG00000025083.19|actin filament associated protein 1-like 2	ENSMUST00000148049.8|Afap1l2|ENSMUSG00000025083.19|actin filament associated protein 1-like 2
mm39_v1_chr10_-_115151451_115151531	0.192628	CCACAGG	ENSMUST00000020343.9|Rab21|ENSMUSG00000020132.11|RAB21, member RAS oncogene family	ENSMUST00000218831.2|Rab21|ENSMUSG00000020132.11|RAB21, member RAS oncogene family
mm39_v1_chr15_+_80057894_80057922	0.190542	CCACAGG	ENSMUST00000044970.7|Mgat3|ENSMUSG00000042428.7|mannoside acetylglucosaminyltransferase 3
mm39_v1_chr11_-_101117237_101117289	0.189448	CCACAGG	ENSMUST00000100417.3|Ezh1|ENSMUSG00000006920.15|enhancer of zeste 1 polycomb repressive complex 2 subunit	ENSMUST00000107285.8|Ezh1|ENSMUSG00000006920.15|enhancer of zeste 1 polycomb repressive complex 2 subunit	ENSMUST00000107284.8|Ezh1|ENSMUSG00000006920.15|enhancer of zeste 1 polycomb repressive complex 2 subunit
mm39_v1_chr6_-_51446752_51446834	0.186273	CCACAGG	ENSMUST00000204188.3|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000203220.3|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000114459.8|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000090002.10|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1
mm39_v1_chr17_-_66384017_66384086	0.185759	CCACAGG	ENSMUST00000150766.2|Ankrd12|ENSMUSG00000034647.16|ankyrin repeat domain 12	ENSMUST00000038116.13|Ankrd12|ENSMUSG00000034647.16|ankyrin repeat domain 12
mm39_v1_chr11_+_73067909_73068060	0.179749	CCACAGG	ENSMUST00000040687.12|Tax1bp3|ENSMUSG00000040158.13|Tax1 (human T cell leukemia virus type I) binding protein 3
mm39_v1_chr16_-_21982049_21982049	0.17954	CCACAGG	ENSMUST00000100052.11|Igf2bp2|ENSMUSG00000033581.18|insulin-like growth factor 2 mRNA binding protein 2
mm39_v1_chr7_-_141614758_141614808	0.176174	CCACAGG	ENSMUST00000211000.2|Mob2|ENSMUSG00000025147.8|MOB kinase activator 2	ENSMUST00000209725.2|Mob2|ENSMUSG00000025147.8|MOB kinase activator 2	ENSMUST00000084418.4|Mob2|ENSMUSG00000025147.8|MOB kinase activator 2
mm39_v1_chr17_+_46471950_46471997	0.175665	CCACAGG	ENSMUST00000024748.14|Gtpbp2|ENSMUSG00000023952.14|GTP binding protein 2	ENSMUST00000172170.8|Gtpbp2|ENSMUSG00000023952.14|GTP binding protein 2
mm39_v1_chr12_-_84265609_84265663	0.175216	CCACAGG	ENSMUST00000046266.13|Mideas|ENSMUSG00000042507.16|mitotic deacetylase associated SANT domain protein	ENSMUST00000220974.2|Mideas|ENSMUSG00000042507.16|mitotic deacetylase associated SANT domain protein
mm39_v1_chr17_-_46342739_46342789	0.175166	CCACAGG	ENSMUST00000024747.14|Vegfa|ENSMUSG00000023951.19|vascular endothelial growth factor A
mm39_v1_chr15_+_11064887_11064909	0.174149	CCACAGG	ENSMUST00000061318.9|Adamts12|ENSMUSG00000047497.11|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12
mm39_v1_chr4_-_87951565_87951610	0.17343	CCACAGG	ENSMUST00000078090.12|Mllt3|ENSMUSG00000028496.18|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3
mm39_v1_chr9_-_20888054_20888077	0.171269	CCACAGG	ENSMUST00000054197.7|S1pr2|ENSMUSG00000043895.7|sphingosine-1-phosphate receptor 2
mm39_v1_chr2_-_179618439_179618458	0.170968	CCACAGG	ENSMUST00000041618.13|Taf4|ENSMUSG00000039117.17|TATA-box binding protein associated factor 4	ENSMUST00000227325.2|Taf4|ENSMUSG00000039117.17|TATA-box binding protein associated factor 4
mm39_v1_chr7_-_16657825_16658039	0.163128	CCACAGG	ENSMUST00000019514.10|Calm3|ENSMUSG00000019370.11|calmodulin 3
mm39_v1_chr15_-_50753061_50753118	0.161779	CCACAGG	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr11_-_69586626_69586698	0.160477	CCACAGG	ENSMUST00000108649.3|Tnfsfm13|ENSMUSG00000018752.20|tumor necrosis factor (ligand) superfamily, membrane-bound member 13	ENSMUST00000174159.8|Tnfsfm13|ENSMUSG00000018752.20|tumor necrosis factor (ligand) superfamily, membrane-bound member 13	ENSMUST00000181810.8|Tnfsf12|ENSMUSG00000097328.8|tumor necrosis factor (ligand) superfamily, member 12
mm39_v1_chr2_-_45003270_45003296	0.160041	CCACAGG	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr19_-_34504871_34504880	0.156237	CCACAGG	ENSMUST00000178114.2|Lipa|ENSMUSG00000024781.17|lysosomal acid lipase A	ENSMUST00000049572.15|Lipa|ENSMUSG00000024781.17|lysosomal acid lipase A
mm39_v1_chr19_+_40819682_40819757	0.155319	CCACAGG	ENSMUST00000025983.13|Ccnj|ENSMUSG00000025010.15|cyclin J	ENSMUST00000119316.2|Ccnj|ENSMUSG00000025010.15|cyclin J
mm39_v1_chr18_+_69478790_69478882	0.152662	CCACAGG	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr17_+_29020064_29020108	0.15051	CCACAGG	ENSMUST00000004985.11|Brpf3|ENSMUSG00000063952.17|bromodomain and PHD finger containing, 3
mm39_v1_chr2_+_76200299_76200386	0.148731	CCACAGG	ENSMUST00000046389.5|Rbm45|ENSMUSG00000042369.9|RNA binding motif protein 45
mm39_v1_chr7_-_126975199_126975227	0.143143	CCACAGG	ENSMUST00000067425.6|Zfp747|ENSMUSG00000054381.6|zinc finger protein 747
mm39_v1_chr2_-_155953874_155953898	0.140901	CCACAGG	ENSMUST00000059647.12|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12	ENSMUST00000109604.9|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12	ENSMUST00000142960.9|Cpne1|ENSMUSG00000074643.13|copine I	ENSMUST00000138068.2|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12	ENSMUST00000136296.9|Cpne1|ENSMUSG00000074643.13|copine I	ENSMUST00000128499.2|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12
mm39_v1_chr11_+_59197746_59197761	0.139418	CCACAGG	ENSMUST00000000128.10|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A	ENSMUST00000108783.4|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A
mm39_v1_chr6_+_42326934_42326978	0.137807	CCACAGG	ENSMUST00000203401.3|Zyx|ENSMUSG00000029860.17|zyxin	ENSMUST00000164375.4|Zyx|ENSMUSG00000029860.17|zyxin
mm39_v1_chr12_+_32870334_32870360	0.135424	CCACAGG	ENSMUST00000020886.9|Nampt|ENSMUSG00000020572.9|nicotinamide phosphoribosyltransferase
mm39_v1_chr4_+_62883796_62883854	0.13517	CCACAGG	ENSMUST00000030043.13|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000107415.8|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000064814.6|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618
mm39_v1_chr16_-_85698679_85698716	0.132901	CCACAGG	ENSMUST00000023611.7|Adamts5|ENSMUSG00000022894.7|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm39_v1_chr15_+_6416229_6416270	0.130064	CCACAGG	ENSMUST00000110664.9|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein	ENSMUST00000110663.9|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein	ENSMUST00000161812.8|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein	ENSMUST00000160134.8|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein
mm39_v1_chr18_+_44513547_44513644	0.12699	CCACAGG	ENSMUST00000202306.2|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2	ENSMUST00000025350.10|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2
mm39_v1_chr11_+_69737437_69737476	0.126548	CCACAGG	ENSMUST00000152566.8|Plscr3|ENSMUSG00000019461.13|phospholipid scramblase 3	ENSMUST00000108633.9|Plscr3|ENSMUSG00000019461.13|phospholipid scramblase 3
mm39_v1_chr12_-_100995242_100995302	0.125295	CCACAGG	ENSMUST00000085096.10|Ccdc88c|ENSMUSG00000021182.17|coiled-coil domain containing 88C
mm39_v1_chr4_+_152243324_152243324	0.122061	CCACAGG	ENSMUST00000030782.2|Hes2|ENSMUSG00000028940.3|hes family bHLH transcription factor 2
mm39_v1_chr18_+_11972277_11972331	0.119414	CCACAGG	ENSMUST00000171109.9|Cables1|ENSMUSG00000040957.16|CDK5 and Abl enzyme substrate 1	ENSMUST00000046948.10|Cables1|ENSMUSG00000040957.16|CDK5 and Abl enzyme substrate 1
mm39_v1_chr11_-_118181044_118181070	0.118654	CCACAGG	ENSMUST00000106296.9|Usp36|ENSMUSG00000033909.18|ubiquitin specific peptidase 36	ENSMUST00000092382.10|Usp36|ENSMUSG00000033909.18|ubiquitin specific peptidase 36
mm39_v1_chr15_-_82223001_82223055	0.117738	CCACAGG	ENSMUST00000023088.8|Naga|ENSMUSG00000022453.9|N-acetyl galactosaminidase, alpha
mm39_v1_chr9_+_77824646_77824668	0.116706	CCACAGG	ENSMUST00000034904.14|Elovl5|ENSMUSG00000032349.14|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm39_v1_chr11_-_106679312_106679358	0.115581	CCACAGG	ENSMUST00000021062.12|Ddx5|ENSMUSG00000020719.15|DEAD box helicase 5
mm39_v1_chr10_+_98750978_98751034	0.114114	CCACAGG	ENSMUST00000020107.8|Atp2b1|ENSMUSG00000019943.11|ATPase, Ca++ transporting, plasma membrane 1
mm39_v1_chr7_-_144837719_144837748	0.110033	CCACAGG	ENSMUST00000058022.6|Tpcn2|ENSMUSG00000048677.10|two pore segment channel 2
mm39_v1_chr13_+_45660905_45660994	0.108493	CCACAGG	ENSMUST00000000260.13|Gmpr|ENSMUSG00000000253.14|guanosine monophosphate reductase
mm39_v1_chr11_+_32592707_32592875	0.108187	CCACAGG	ENSMUST00000109366.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000093205.13|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000076383.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11
mm39_v1_chr9_+_70586232_70586292	0.107541	CCACAGG	ENSMUST00000067880.13|Adam10|ENSMUSG00000054693.15|a disintegrin and metallopeptidase domain 10
mm39_v1_chr12_-_8550003_8550017	0.106813	CCACAGG	ENSMUST00000067384.6|Rhob|ENSMUSG00000054364.6|ras homolog family member B
mm39_v1_chr12_-_102844537_102844709	0.10678	CCACAGG	ENSMUST00000045652.8|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7	ENSMUST00000223554.2|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7
mm39_v1_chr16_+_17269845_17269903	0.103777	CCACAGG	ENSMUST00000006293.5|Crkl|ENSMUSG00000006134.5|v-crk avian sarcoma virus CT10 oncogene homolog-like	ENSMUST00000231228.2|Crkl|ENSMUSG00000006134.5|v-crk avian sarcoma virus CT10 oncogene homolog-like
mm39_v1_chr17_-_47321430_47321518	0.103419	CCACAGG	ENSMUST00000113337.10|Ubr2|ENSMUSG00000023977.16|ubiquitin protein ligase E3 component n-recognin 2	ENSMUST00000113335.4|Ubr2|ENSMUSG00000023977.16|ubiquitin protein ligase E3 component n-recognin 2
mm39_v1_chr11_-_120524362_120524431	0.102715	CCACAGG	ENSMUST00000058162.14|Mafg|ENSMUSG00000051510.14|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
mm39_v1_chr10_-_127124718_127124787	0.102075	CCACAGG	ENSMUST00000156208.2|Mbd6|ENSMUSG00000025409.15|methyl-CpG binding domain protein 6	ENSMUST00000026476.13|Mbd6|ENSMUSG00000025409.15|methyl-CpG binding domain protein 6
mm39_v1_chrX_-_73009933_73009982	0.0997035	CCACAGG	ENSMUST00000114372.3|Hcfc1|ENSMUSG00000031386.15|host cell factor C1	ENSMUST00000033761.13|Hcfc1|ENSMUSG00000031386.15|host cell factor C1
mm39_v1_chr11_+_95304903_95305069	0.0994649	CCACAGG	ENSMUST00000107724.9|Spop|ENSMUSG00000057522.16|speckle-type BTB/POZ protein	ENSMUST00000150884.8|Spop|ENSMUSG00000057522.16|speckle-type BTB/POZ protein	ENSMUST00000107722.8|Spop|ENSMUSG00000057522.16|speckle-type BTB/POZ protein	ENSMUST00000127713.2|Spop|ENSMUSG00000057522.16|speckle-type BTB/POZ protein
mm39_v1_chr2_+_131104389_131104487	0.096846	CCACAGG	ENSMUST00000150843.9|Pank2|ENSMUSG00000037514.19|pantothenate kinase 2
mm39_v1_chr9_+_56325893_56325965	0.0930273	CCACAGG	ENSMUST00000034879.5|Hmg20a|ENSMUSG00000032329.5|high mobility group 20A	ENSMUST00000215269.2|Hmg20a|ENSMUSG00000032329.5|high mobility group 20A
mm39_v1_chr6_+_17463748_17463808	0.092833	CCACAGG	ENSMUST00000115443.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr15_+_66449385_66449487	0.0908637	CCACAGG	ENSMUST00000230882.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000048188.10|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000230948.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000229160.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1
mm39_v1_chr9_+_106048116_106048153	0.0876009	CCACAGG	ENSMUST00000020490.13|Wdr82|ENSMUSG00000020257.14|WD repeat domain containing 82
mm39_v1_chr16_-_35589726_35589755	0.0854934	CCACAGG	ENSMUST00000023554.9|Slc49a4|ENSMUSG00000022848.9|solute carrier family 49 member 4
mm39_v1_chr2_+_68691778_68691854	0.0838791	CCACAGG	ENSMUST00000028426.9|Cers6|ENSMUSG00000027035.11|ceramide synthase 6
mm39_v1_chr12_+_111540920_111540977	0.0815358	CCACAGG	ENSMUST00000075281.8|Mark3|ENSMUSG00000007411.17|MAP/microtubule affinity regulating kinase 3	ENSMUST00000084953.13|Mark3|ENSMUSG00000007411.17|MAP/microtubule affinity regulating kinase 3
mm39_v1_chr6_+_108637577_108637643	0.0807348	CCACAGG	ENSMUST00000032194.11|Bhlhe40|ENSMUSG00000030103.12|basic helix-loop-helix family, member e40
mm39_v1_chr15_-_58953838_58953867	0.0798627	CCACAGG	ENSMUST00000080371.8|Mtss1|ENSMUSG00000022353.11|MTSS I-BAR domain containing 1
mm39_v1_chr16_+_20354225_20354300	0.0788816	CCACAGG	ENSMUST00000090023.13|Ap2m1|ENSMUSG00000022841.16|adaptor-related protein complex 2, mu 1 subunit	ENSMUST00000007216.9|Ap2m1|ENSMUSG00000022841.16|adaptor-related protein complex 2, mu 1 subunit	ENSMUST00000232001.2|Ap2m1|ENSMUSG00000022841.16|adaptor-related protein complex 2, mu 1 subunit
mm39_v1_chr11_-_102209767_102209922	0.078722	CCACAGG	ENSMUST00000174302.8|Ubtf|ENSMUSG00000020923.18|upstream binding transcription factor, RNA polymerase I	ENSMUST00000178839.8|Ubtf|ENSMUSG00000020923.18|upstream binding transcription factor, RNA polymerase I	ENSMUST00000006754.14|Ubtf|ENSMUSG00000020923.18|upstream binding transcription factor, RNA polymerase I
mm39_v1_chr15_+_80556023_80556062	0.0776767	CCACAGG	ENSMUST00000023044.7|Fam83f|ENSMUSG00000022408.8|family with sequence similarity 83, member F
mm39_v1_chr9_-_66500404_66500424	0.0766243	CCACAGG	ENSMUST00000127569.8|Usp3|ENSMUSG00000032376.13|ubiquitin specific peptidase 3
mm39_v1_chr1_-_156767123_156767186	0.0727616	CCACAGG	ENSMUST00000189316.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000190648.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000172057.8|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000191605.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2
mm39_v1_chrX_-_133652080_133652139	0.0691956	CCACAGG	ENSMUST00000113194.8|Armcx6|ENSMUSG00000050394.15|armadillo repeat containing, X-linked 6
mm39_v1_chr4_+_137720326_137720359	0.0676108	CCACAGG	ENSMUST00000139759.8|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3	ENSMUST00000058133.10|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3	ENSMUST00000105830.9|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3	ENSMUST00000084215.12|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3
mm39_v1_chr15_-_11905697_11905760	0.0672184	CCACAGG	ENSMUST00000066529.5|Npr3|ENSMUSG00000022206.8|natriuretic peptide receptor 3	ENSMUST00000228603.2|Npr3|ENSMUSG00000022206.8|natriuretic peptide receptor 3
mm39_v1_chr6_-_53797748_53797822	0.06638	CCACAGG	ENSMUST00000127748.5|Tril|ENSMUSG00000043496.8|TLR4 interactor with leucine-rich repeats
mm39_v1_chr11_-_60770098_60770251	0.0657152	CCACAGG	ENSMUST00000062677.12|Tmem11|ENSMUSG00000043284.13|transmembrane protein 11
mm39_v1_chr12_-_50695881_50696064	0.0656503	CCACAGG	ENSMUST00000002765.9|Prkd1|ENSMUSG00000002688.9|protein kinase D1
mm39_v1_chr7_-_29204812_29204898	0.0655131	CCACAGG	ENSMUST00000183096.8|Sipa1l3|ENSMUSG00000030583.17|signal-induced proliferation-associated 1 like 3	ENSMUST00000085809.11|Sipa1l3|ENSMUSG00000030583.17|signal-induced proliferation-associated 1 like 3
mm39_v1_chr3_-_65300000_65300044	0.0651628	CCACAGG	ENSMUST00000029414.12|Ssr3|ENSMUSG00000027828.13|signal sequence receptor, gamma
mm39_v1_chr12_-_79343040_79343086	0.0646681	CCACAGG	ENSMUST00000218377.2|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26	ENSMUST00000021547.8|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26
mm39_v1_chr12_+_80837284_80837348	0.062729	CCACAGG	ENSMUST00000220238.2|Susd6|ENSMUSG00000021133.10|sushi domain containing 6	ENSMUST00000068519.7|Susd6|ENSMUSG00000021133.10|sushi domain containing 6
mm39_v1_chr6_-_92160952_92161019	0.0618559	CCACAGG	ENSMUST00000140438.2|Mrps25|ENSMUSG00000014551.9|mitochondrial ribosomal protein S25
mm39_v1_chr13_-_120252337_120252425	0.0610323	CCACAGG	ENSMUST00000177916.8|Zfp131|ENSMUSG00000094870.9|zinc finger protein 131	ENSMUST00000178271.3|Zfp131|ENSMUSG00000094870.9|zinc finger protein 131	ENSMUST00000223722.2|Zfp131|ENSMUSG00000094870.9|zinc finger protein 131
mm39_v1_chr2_+_101508747_101508815	0.0593314	CCACAGG	ENSMUST00000004949.8|Traf6|ENSMUSG00000027164.9|TNF receptor-associated factor 6
mm39_v1_chr19_-_5944098_5944177	0.0577055	CCACAGG	ENSMUST00000055911.6|Tigd3|ENSMUSG00000044390.6|tigger transposable element derived 3	ENSMUST00000236767.2|Tigd3|ENSMUSG00000044390.6|tigger transposable element derived 3
mm39_v1_chr2_-_25145358_25145428	0.0563032	CCACAGG	ENSMUST00000141808.8|Ndor1|ENSMUSG00000006471.19|NADPH dependent diflavin oxidoreductase 1	ENSMUST00000100329.10|Ndor1|ENSMUSG00000006471.19|NADPH dependent diflavin oxidoreductase 1	ENSMUST00000228052.2|Ndor1|ENSMUSG00000115074.2|NADPH dependent diflavin oxidoreductase 1	ENSMUST00000114349.9|Ndor1|ENSMUSG00000006471.19|NADPH dependent diflavin oxidoreductase 1	ENSMUST00000147866.2|Ndor1|ENSMUSG00000006471.19|NADPH dependent diflavin oxidoreductase 1
mm39_v1_chr6_-_120015608_120015660	0.0556572	CCACAGG	ENSMUST00000177761.8|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000088644.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000060043.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chr11_+_23256883_23256908	0.0547877	CCACAGG	ENSMUST00000180046.8|Usp34|ENSMUSG00000056342.17|ubiquitin specific peptidase 34
mm39_v1_chr18_+_73706115_73706115	0.0536701	CCACAGG	ENSMUST00000091852.5|Mex3c|ENSMUSG00000037253.9|mex3 RNA binding family member C
mm39_v1_chr10_+_93476903_93476918	0.0531001	CCACAGG	ENSMUST00000020204.5|Ntn4|ENSMUSG00000020019.5|netrin 4
mm39_v1_chr16_+_11140740_11140775	0.0526725	CCACAGG	ENSMUST00000180792.8|Snx29|ENSMUSG00000071669.15|sorting nexin 29
mm39_v1_chr3_+_97565528_97565656	0.0499786	CCACAGG	ENSMUST00000045743.13|Prkab2|ENSMUSG00000038205.13|protein kinase, AMP-activated, beta 2 non-catalytic subunit
mm39_v1_chr3_-_151899470_151899482	0.0488914	CCACAGG	ENSMUST00000050073.13|Dnajb4|ENSMUSG00000028035.14|DnaJ heat shock protein family (Hsp40) member B4
mm39_v1_chr10_-_30531768_30531807	0.0479707	CCACAGG	ENSMUST00000092610.12|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7
mm39_v1_chr19_-_7360350_7360366	0.0476003	CCACAGG	ENSMUST00000025924.4|Spindoc|ENSMUSG00000024970.6|spindlin interactor and repressor of chromatin binding
mm39_v1_chr10_-_128727542_128727587	0.045039	CCACAGG	ENSMUST00000026408.7|Gdf11|ENSMUSG00000025352.7|growth differentiation factor 11
mm39_v1_chr1_+_36346824_36346850	0.0449574	CCACAGG	ENSMUST00000142319.8|Arid5a|ENSMUSG00000037447.17|AT rich interactive domain 5A (MRF1-like)	ENSMUST00000097778.9|Arid5a|ENSMUSG00000037447.17|AT rich interactive domain 5A (MRF1-like)	ENSMUST00000115031.8|Arid5a|ENSMUSG00000037447.17|AT rich interactive domain 5A (MRF1-like)	ENSMUST00000115032.8|Arid5a|ENSMUSG00000037447.17|AT rich interactive domain 5A (MRF1-like)	ENSMUST00000137906.2|Arid5a|ENSMUSG00000037447.17|AT rich interactive domain 5A (MRF1-like)	ENSMUST00000115029.2|Arid5a|ENSMUSG00000037447.17|AT rich interactive domain 5A (MRF1-like)
mm39_v1_chr18_-_6241470_6241550	0.0438939	CCACAGG	ENSMUST00000163210.2|Kif5b|ENSMUSG00000006740.15|kinesin family member 5B	ENSMUST00000025083.14|Kif5b|ENSMUSG00000006740.15|kinesin family member 5B
mm39_v1_chr19_+_8797330_8797398	0.0411353	CCACAGG	ENSMUST00000096753.5|Hnrnpul2|ENSMUSG00000071659.5|heterogeneous nuclear ribonucleoprotein U-like 2
mm39_v1_chr8_+_70275079_70275243	0.0396895	CCACAGG	ENSMUST00000164890.8|Lpar2|ENSMUSG00000031861.17|lysophosphatidic acid receptor 2	ENSMUST00000034325.6|Lpar2|ENSMUSG00000031861.17|lysophosphatidic acid receptor 2	ENSMUST00000238452.2|Lpar2|ENSMUSG00000031861.17|lysophosphatidic acid receptor 2
mm39_v1_chr1_+_160733942_160734030	0.0369487	CCACAGG	ENSMUST00000161609.8|Rc3h1|ENSMUSG00000040423.12|RING CCCH (C3H) domains 1
mm39_v1_chr4_+_86666764_86666797	0.0361833	CCACAGG	ENSMUST00000045512.15|Dennd4c|ENSMUSG00000038024.18|DENN/MADD domain containing 4C	ENSMUST00000082026.14|Dennd4c|ENSMUSG00000038024.18|DENN/MADD domain containing 4C
mm39_v1_chr12_+_111005768_111005834	0.0349388	CCACAGG	ENSMUST00000084968.14|Rcor1|ENSMUSG00000037896.18|REST corepressor 1
mm39_v1_chr19_+_53298906_53298983	0.0327849	CCACAGG	ENSMUST00000003870.15|Mxi1|ENSMUSG00000025025.15|MAX interactor 1, dimerization protein
mm39_v1_chr6_-_88495835_88495887	0.0313814	CCACAGG	ENSMUST00000032168.7|Sec61a1|ENSMUSG00000030082.15|Sec61 alpha 1 subunit (S. cerevisiae)
mm39_v1_chr4_+_129407374_129407437	0.0313569	CCACAGG	ENSMUST00000062356.7|Marcksl1|ENSMUSG00000047945.7|MARCKS-like 1
mm39_v1_chr9_+_114560235_114560308	0.0311311	CCACAGG	ENSMUST00000035007.10|Cmtm6|ENSMUSG00000032434.10|CKLF-like MARVEL transmembrane domain containing 6
mm39_v1_chr8_+_117884711_117884876	0.0310921	CCACAGG	ENSMUST00000064488.11|Gan|ENSMUSG00000052557.12|giant axonal neuropathy	ENSMUST00000162997.3|Gan|ENSMUSG00000052557.12|giant axonal neuropathy
mm39_v1_chr4_-_135780660_135780715	0.0269682	CCACAGG	ENSMUST00000102536.11|Rpl11|ENSMUSG00000059291.16|ribosomal protein L11
mm39_v1_chr11_-_82781369_82781452	0.0242514	CCACAGG	ENSMUST00000092844.13|Rad51d|ENSMUSG00000018841.18|RAD51 paralog D	ENSMUST00000021033.16|Rad51d|ENSMUSG00000018841.18|RAD51 paralog D	ENSMUST00000018985.15|Rad51d|ENSMUSG00000018841.18|RAD51 paralog D
mm39_v1_chr17_+_29879569_29879680	0.0238239	CCACAGG	ENSMUST00000024816.13|Cmtr1|ENSMUSG00000024019.19|cap methyltransferase 1	ENSMUST00000235031.2|Cmtr1|ENSMUSG00000024019.19|cap methyltransferase 1	ENSMUST00000234911.2|Cmtr1|ENSMUSG00000024019.19|cap methyltransferase 1
mm39_v1_chr4_-_129534853_129534873	0.0234354	CCACAGG	ENSMUST00000046425.16|Txlna|ENSMUSG00000053841.16|taxilin alpha	ENSMUST00000133803.8|Txlna|ENSMUSG00000053841.16|taxilin alpha
mm39_v1_chr3_+_145281941_145282091	0.0222116	CCACAGG	ENSMUST00000199033.5|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6	ENSMUST00000098534.9|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6	ENSMUST00000200574.5|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6	ENSMUST00000196413.5|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6	ENSMUST00000197604.3|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6
mm39_v1_chr11_+_29642937_29643001	0.0205229	CCACAGG	ENSMUST00000102843.10|Rtn4|ENSMUSG00000020458.17|reticulon 4	ENSMUST00000102842.10|Rtn4|ENSMUSG00000020458.17|reticulon 4	ENSMUST00000078830.11|Rtn4|ENSMUSG00000020458.17|reticulon 4	ENSMUST00000170731.8|Rtn4|ENSMUSG00000020458.17|reticulon 4
mm39_v1_chrX_+_12937714_12937797	0.0198494	CCACAGG	ENSMUST00000169594.9|Usp9x|ENSMUSG00000031010.18|ubiquitin specific peptidase 9, X chromosome	ENSMUST00000089302.11|Usp9x|ENSMUSG00000031010.18|ubiquitin specific peptidase 9, X chromosome
mm39_v1_chr4_-_66322695_66322745	0.0188077	CCACAGG	ENSMUST00000084496.3|Astn2|ENSMUSG00000028373.17|astrotactin 2
mm39_v1_chr1_-_36748985_36749089	0.0155249	CCACAGG	ENSMUST00000043951.10|Actr1b|ENSMUSG00000037351.10|ARP1 actin-related protein 1B, centractin beta
mm39_v1_chr10_-_8761777_8761821	0.0143799	CCACAGG	ENSMUST00000015449.6|Sash1|ENSMUSG00000015305.7|SAM and SH3 domain containing 1
mm39_v1_chr4_-_108436514_108436549	0.0126996	CCACAGG	ENSMUST00000079213.6|Prpf38a|ENSMUSG00000063800.6|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
mm39_v1_chr7_+_99184645_99184709	0.0121315	CCACAGG	ENSMUST00000098266.9|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1	ENSMUST00000179755.8|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1
mm39_v1_chr15_-_89310060_89310075	0.0115861	CCACAGG	ENSMUST00000109313.9|Cpt1b|ENSMUSG00000078937.9|carnitine palmitoyltransferase 1b, muscle
mm39_v1_chr5_+_28522150_28522217	0.0115485	CCACAGG	ENSMUST00000114884.8|Rbm33|ENSMUSG00000048271.15|RNA binding motif protein 33	ENSMUST00000059644.13|Rbm33|ENSMUSG00000048271.15|RNA binding motif protein 33	ENSMUST00000030920.6|Rbm33|ENSMUSG00000048271.15|RNA binding motif protein 33
mm39_v1_chr4_-_126861918_126861947	0.0105238	CCACAGG	ENSMUST00000106108.9|Zmym4|ENSMUSG00000042446.17|zinc finger, MYM-type 4
mm39_v1_chr4_+_140875222_140875282	0.0104521	CCACAGG	ENSMUST00000030757.10|Fbxo42|ENSMUSG00000028920.10|F-box protein 42
mm39_v1_chr5_-_92231314_92231416	0.00989486	CCACAGG	ENSMUST00000169094.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2	ENSMUST00000167918.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2
mm39_v1_chr1_-_170978157_170978180	0.00894668	CCACAGG	ENSMUST00000155798.2|Sdhc|ENSMUSG00000058076.13|succinate dehydrogenase complex, subunit C, integral membrane protein	ENSMUST00000081560.5|Sdhc|ENSMUSG00000058076.13|succinate dehydrogenase complex, subunit C, integral membrane protein	ENSMUST00000111336.10|Sdhc|ENSMUSG00000058076.13|succinate dehydrogenase complex, subunit C, integral membrane protein
mm39_v1_chr4_-_116001737_116001806	0.00414642	CCACAGG	ENSMUST00000030469.5|Lurap1|ENSMUSG00000028701.5|leucine rich adaptor protein 1
mm39_v1_chr4_-_35157405_35157504	0.00356792	CCACAGG	ENSMUST00000102975.10|Mob3b|ENSMUSG00000073910.11|MOB kinase activator 3B
mm39_v1_chr2_+_118731860_118731969	0.00335631	CCACAGG	ENSMUST00000036578.7|Bahd1|ENSMUSG00000040007.9|bromo adjacent homology domain containing 1
mm39_v1_chr8_+_26275314_26275348	0.00260994	CCACAGG	ENSMUST00000038421.8|Lsm1|ENSMUSG00000037296.8|LSM1 homolog, mRNA degradation associated
mm39_v1_chr14_-_14255588_14255638	0.00247731	CCACAGG	ENSMUST00000022272.14|Kctd6|ENSMUSG00000021752.15|potassium channel tetramerisation domain containing 6
mm39_v1_chr10_-_63039709_63039735	0.00108578	CCACAGG	ENSMUST00000095580.3|Mypn|ENSMUSG00000020067.9|myopalladin
