mm39_v1_chr15_-_78088423_78088439	0.693756	CCAGCAU	ENSMUST00000005860.16|Pvalb|ENSMUSG00000005716.17|parvalbumin
mm39_v1_chr18_+_61058684_61058712	0.668387	CCAGCAU	ENSMUST00000102888.10|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha	ENSMUST00000025519.11|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha
mm39_v1_chr2_+_121120070_121120087	0.518034	CCAGCAU	ENSMUST00000094639.10|Map1a|ENSMUSG00000027254.14|microtubule-associated protein 1 A
mm39_v1_chr8_-_89770790_89770823	0.427446	CCAGCAU	ENSMUST00000034090.8|Sall1|ENSMUSG00000031665.8|spalt like transcription factor 1
mm39_v1_chr4_-_151946219_151946333	0.420613	CCAGCAU	ENSMUST00000097774.9|Camta1|ENSMUSG00000014592.22|calmodulin binding transcription activator 1
mm39_v1_chr13_-_105191403_105191438	0.356342	CCAGCAU	ENSMUST00000063551.7|Rgs7bp|ENSMUSG00000021719.10|regulator of G-protein signalling 7 binding protein
mm39_v1_chr12_-_46865709_46865720	0.331408	CCAGCAU	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr4_-_56990306_56990394	0.324381	CCAGCAU	ENSMUST00000053681.6|Frrs1l|ENSMUSG00000045589.8|ferric-chelate reductase 1 like
mm39_v1_chr11_-_95966477_95966516	0.318611	CCAGCAU	ENSMUST00000090541.12|Atp5g1|ENSMUSG00000006057.16|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)
mm39_v1_chr13_+_45660905_45660994	0.29993	CCAGCAU	ENSMUST00000000260.13|Gmpr|ENSMUSG00000000253.14|guanosine monophosphate reductase
mm39_v1_chr16_-_67417768_67417810	0.293112	CCAGCAU	ENSMUST00000114292.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2	ENSMUST00000120898.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2
mm39_v1_chr6_-_113172340_113172349	0.291057	CCAGCAU	ENSMUST00000162280.2|Lhfpl4|ENSMUSG00000042873.12|lipoma HMGIC fusion partner-like protein 4
mm39_v1_chr10_+_53213763_53213820	0.273864	CCAGCAU	ENSMUST00000219491.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000163319.9|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000220197.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000046221.8|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000218468.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000219921.2|Pln|ENSMUSG00000038583.14|phospholamban
mm39_v1_chrX_+_72800675_72800711	0.27341	CCAGCAU	ENSMUST00000002079.7|Plxnb3|ENSMUSG00000031385.15|plexin B3
mm39_v1_chr19_-_58849407_58849428	0.263965	CCAGCAU	ENSMUST00000066285.6|Hspa12a|ENSMUSG00000025092.8|heat shock protein 12A
mm39_v1_chr6_+_86826470_86826577	0.224201	CCAGCAU	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chr12_-_87312994_87313065	0.223155	CCAGCAU	ENSMUST00000072744.15|Vipas39|ENSMUSG00000021038.18|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
mm39_v1_chr8_-_41586713_41586793	0.223125	CCAGCAU	ENSMUST00000155055.2|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1	ENSMUST00000059115.13|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1	ENSMUST00000145860.2|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1
mm39_v1_chr11_+_94827050_94827087	0.217753	CCAGCAU	ENSMUST00000001547.8|Col1a1|ENSMUSG00000001506.11|collagen, type I, alpha 1
mm39_v1_chr4_-_140393185_140393323	0.213877	CCAGCAU	ENSMUST00000069623.12|Arhgef10l|ENSMUSG00000040964.17|Rho guanine nucleotide exchange factor (GEF) 10-like
mm39_v1_chr13_+_83652352_83652374	0.211645	CCAGCAU	ENSMUST00000198916.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000200123.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000005722.14|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000163888.8|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr3_-_158267771_158267939	0.202158	CCAGCAU	ENSMUST00000199890.5|Lrrc7|ENSMUSG00000028176.14|leucine rich repeat containing 7	ENSMUST00000238317.3|Lrrc7|ENSMUSG00000028176.14|leucine rich repeat containing 7	ENSMUST00000200137.5|Lrrc7|ENSMUSG00000028176.14|leucine rich repeat containing 7	ENSMUST00000106044.6|Lrrc7|ENSMUSG00000028176.14|leucine rich repeat containing 7
mm39_v1_chr9_+_32027335_32027432	0.185802	CCAGCAU	ENSMUST00000174641.8|Arhgap32|ENSMUSG00000041444.15|Rho GTPase activating protein 32
mm39_v1_chr7_-_90106375_90106437	0.183495	CCAGCAU	ENSMUST00000032844.7|Tmem126a|ENSMUSG00000030615.13|transmembrane protein 126A
mm39_v1_chr9_-_30833748_30833861	0.176208	CCAGCAU	ENSMUST00000065112.7|Adamts15|ENSMUSG00000033453.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15
mm39_v1_chr5_-_121147593_121147639	0.156432	CCAGCAU	ENSMUST00000079204.9|Rph3a|ENSMUSG00000029608.11|rabphilin 3A
mm39_v1_chr9_-_119852624_119852664	0.150814	CCAGCAU	ENSMUST00000111635.4|Xirp1|ENSMUSG00000079243.6|xin actin-binding repeat containing 1
mm39_v1_chr5_+_118307754_118307813	0.126306	CCAGCAU	ENSMUST00000054836.7|Hrk|ENSMUSG00000046607.7|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm39_v1_chr19_-_34724689_34724713	0.12576	CCAGCAU	ENSMUST00000009522.4|Slc16a12|ENSMUSG00000009378.5|solute carrier family 16 (monocarboxylic acid transporters), member 12
mm39_v1_chr8_+_77626400_77626456	0.124185	CCAGCAU	ENSMUST00000109913.9|Nr3c2|ENSMUSG00000031618.14|nuclear receptor subfamily 3, group C, member 2
mm39_v1_chr3_-_90416757_90416813	0.123114	CCAGCAU	ENSMUST00000107343.8|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000001043.14|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000107344.8|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000076639.11|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000107346.8|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000146740.8|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000107342.2|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000049937.13|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1
mm39_v1_chr15_+_4404965_4404994	0.120084	CCAGCAU	ENSMUST00000061925.5|Plcxd3|ENSMUSG00000049148.9|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm39_v1_chr10_-_62067026_62067033	0.114434	CCAGCAU	ENSMUST00000047883.11|Tspan15|ENSMUSG00000037031.11|tetraspanin 15
mm39_v1_chr16_+_34842764_34842811	0.113765	CCAGCAU	ENSMUST00000061156.10|Hacd2|ENSMUSG00000035376.11|3-hydroxyacyl-CoA dehydratase 2
mm39_v1_chrX_-_7440480_7440555	0.110042	CCAGCAU	ENSMUST00000115742.9|Ppp1r3f|ENSMUSG00000039556.17|protein phosphatase 1, regulatory subunit 3F	ENSMUST00000150787.8|Ppp1r3f|ENSMUSG00000039556.17|protein phosphatase 1, regulatory subunit 3F
mm39_v1_chr2_-_162502994_162503067	0.108942	CCAGCAU	ENSMUST00000109442.8|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T	ENSMUST00000109445.9|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T	ENSMUST00000109443.8|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T	ENSMUST00000109441.2|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T
mm39_v1_chr2_-_52566583_52566601	0.104172	CCAGCAU	ENSMUST00000178799.8|Cacnb4|ENSMUSG00000017412.16|calcium channel, voltage-dependent, beta 4 subunit
mm39_v1_chr7_+_121666388_121666438	0.102347	CCAGCAU	ENSMUST00000033158.6|Ubfd1|ENSMUSG00000030870.13|ubiquitin family domain containing 1
mm39_v1_chr12_+_111132779_111132832	0.0962324	CCAGCAU	ENSMUST00000117269.8|Traf3|ENSMUSG00000021277.17|TNF receptor-associated factor 3
mm39_v1_chr10_+_18283405_18283464	0.0919487	CCAGCAU	ENSMUST00000037341.14|Nhsl1|ENSMUSG00000039835.17|NHS-like 1
mm39_v1_chr11_+_105480796_105480857	0.0905069	CCAGCAU	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr7_-_144493560_144493606	0.0871555	CCAGCAU	ENSMUST00000093962.5|Ccnd1|ENSMUSG00000070348.6|cyclin D1
mm39_v1_chr4_-_149184259_149184333	0.0838095	CCAGCAU	ENSMUST00000103217.11|Pex14|ENSMUSG00000028975.17|peroxisomal biogenesis factor 14
mm39_v1_chr11_+_5470652_5470659	0.0833276	CCAGCAU	ENSMUST00000063084.16|Xbp1|ENSMUSG00000020484.20|X-box binding protein 1
mm39_v1_chr11_-_118246332_118246332	0.0822521	CCAGCAU	ENSMUST00000017610.10|Timp2|ENSMUSG00000017466.10|tissue inhibitor of metalloproteinase 2
mm39_v1_chr14_-_78774201_78774292	0.0786768	CCAGCAU	ENSMUST00000123853.9|Akap11|ENSMUSG00000022016.18|A kinase (PRKA) anchor protein 11
mm39_v1_chr1_+_120530134_120530147	0.0760189	CCAGCAU	ENSMUST00000079721.9|En1|ENSMUSG00000058665.9|engrailed 1
mm39_v1_chr5_-_135963408_135963467	0.072543	CCAGCAU	ENSMUST00000198270.2|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	ENSMUST00000055808.6|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm39_v1_chr2_+_151384403_151384423	0.0678501	CCAGCAU	ENSMUST00000044011.12|Fkbp1a|ENSMUSG00000032966.15|FK506 binding protein 1a
mm39_v1_chr11_-_44361289_44361340	0.0624336	CCAGCAU	ENSMUST00000102795.4|Ublcp1|ENSMUSG00000041231.16|ubiquitin-like domain containing CTD phosphatase 1
mm39_v1_chr11_-_20062876_20062925	0.0617391	CCAGCAU	ENSMUST00000000137.8|Actr2|ENSMUSG00000020152.8|ARP2 actin-related protein 2
mm39_v1_chr7_-_115637970_115637985	0.0598353	CCAGCAU	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr2_-_118859821_118859883	0.0583533	CCAGCAU	ENSMUST00000110833.2|Ccdc32|ENSMUSG00000039983.14|coiled-coil domain containing 32	ENSMUST00000036470.14|Ccdc32|ENSMUSG00000039983.14|coiled-coil domain containing 32	ENSMUST00000110834.8|Ccdc32|ENSMUSG00000039983.14|coiled-coil domain containing 32
mm39_v1_chr16_-_38620688_38620699	0.0546292	CCAGCAU	ENSMUST00000057767.6|Upk1b|ENSMUSG00000049436.6|uroplakin 1B
mm39_v1_chr6_+_8948608_8948619	0.0528942	CCAGCAU	ENSMUST00000160300.2|Nxph1|ENSMUSG00000046178.4|neurexophilin 1
mm39_v1_chr2_-_52314837_52314928	0.0489963	CCAGCAU	ENSMUST00000036541.8|Arl5a|ENSMUSG00000036093.8|ADP-ribosylation factor-like 5A
mm39_v1_chr18_-_16942289_16942384	0.048776	CCAGCAU	ENSMUST00000025166.14|Cdh2|ENSMUSG00000024304.15|cadherin 2
mm39_v1_chr8_-_116434517_116434533	0.0451469	CCAGCAU	ENSMUST00000109104.2|Maf|ENSMUSG00000055435.7|avian musculoaponeurotic fibrosarcoma oncogene homolog
mm39_v1_chr19_+_16110176_16110285	0.0436877	CCAGCAU	ENSMUST00000025541.6|Gnaq|ENSMUSG00000024639.6|guanine nucleotide binding protein, alpha q polypeptide
mm39_v1_chr2_+_59442378_59442453	0.0432251	CCAGCAU	ENSMUST00000112568.8|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	ENSMUST00000037526.11|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm39_v1_chr8_+_18896267_18896344	0.0356429	CCAGCAU	ENSMUST00000149565.8|Agpat5|ENSMUSG00000031467.11|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	ENSMUST00000033847.5|Agpat5|ENSMUSG00000031467.11|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
mm39_v1_chr7_+_134272395_134272445	0.0349361	CCAGCAU	ENSMUST00000211593.2|Dock1|ENSMUSG00000058325.7|dedicator of cytokinesis 1	ENSMUST00000084488.5|Dock1|ENSMUSG00000058325.7|dedicator of cytokinesis 1
mm39_v1_chr17_-_71297885_71297931	0.0297274	CCAGCAU	ENSMUST00000038446.10|Myl12b|ENSMUSG00000034868.10|myosin, light chain 12B, regulatory
mm39_v1_chr19_-_47452840_47452894	0.025283	CCAGCAU	ENSMUST00000081619.10|Sh3pxd2a|ENSMUSG00000053617.13|SH3 and PX domains 2A
mm39_v1_chr3_-_108322868_108322868	0.0248176	CCAGCAU	ENSMUST00000090558.10|Celsr2|ENSMUSG00000068740.14|cadherin, EGF LAG seven-pass G-type receptor 2
mm39_v1_chr12_-_24147247_24147247	0.0164215	CCAGCAU	ENSMUST00000101538.5|9030624G23Rik|ENSMUSG00000073158.5|RIKEN cDNA 9030624G23 gene
mm39_v1_chr11_+_72498029_72498133	0.0132862	CCAGCAU	ENSMUST00000021148.13|Ube2g1|ENSMUSG00000020794.14|ubiquitin-conjugating enzyme E2G 1	ENSMUST00000138247.8|Ube2g1|ENSMUSG00000020794.14|ubiquitin-conjugating enzyme E2G 1
mm39_v1_chr7_-_132616977_132617058	0.00888441	CCAGCAU	ENSMUST00000169570.8|Ctbp2|ENSMUSG00000030970.17|C-terminal binding protein 2
mm39_v1_chr8_-_114575247_114575406	0.00564122	CCAGCAU	ENSMUST00000093113.5|Adamts18|ENSMUSG00000053399.10|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
mm39_v1_chr11_+_96820091_96820175	0.00457029	CCAGCAU	ENSMUST00000054311.6|Prr15l|ENSMUSG00000047040.10|proline rich 15-like	ENSMUST00000107636.4|Prr15l|ENSMUSG00000047040.10|proline rich 15-like
mm39_v1_chr6_-_120015608_120015660	0.00379707	CCAGCAU	ENSMUST00000177761.8|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000088644.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000060043.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chrX_+_100576340_100576383	0.00357503	CCAGCAU	ENSMUST00000118878.8|Taf1|ENSMUSG00000031314.19|TATA-box binding protein associated factor 1	ENSMUST00000101341.9|Taf1|ENSMUSG00000031314.19|TATA-box binding protein associated factor 1	ENSMUST00000149274.9|Taf1|ENSMUSG00000031314.19|TATA-box binding protein associated factor 1
mm39_v1_chr1_-_75168567_75168641	0.000616185	CCAGCAU	ENSMUST00000040689.15|Atg9a|ENSMUSG00000033124.17|autophagy related 9A	ENSMUST00000189702.7|Atg9a|ENSMUSG00000033124.17|autophagy related 9A
