mm39_v1_chr2_-_84255602_84255755	2.76816	CCUUCAU	ENSMUST00000074262.9|Calcrl|ENSMUSG00000059588.14|calcitonin receptor-like
mm39_v1_chr10_-_128425519_128425542	2.01449	CCUUCAU	ENSMUST00000082059.7|Erbb3|ENSMUSG00000018166.9|erb-b2 receptor tyrosine kinase 3
mm39_v1_chr17_-_46342739_46342789	1.65027	CCUUCAU	ENSMUST00000024747.14|Vegfa|ENSMUSG00000023951.19|vascular endothelial growth factor A
mm39_v1_chr15_+_91557378_91557471	1.56796	CCUUCAU	ENSMUST00000060642.7|Lrrk2|ENSMUSG00000036273.16|leucine-rich repeat kinase 2
mm39_v1_chr10_-_70995485_70995537	1.52804	CCUUCAU	ENSMUST00000014473.6|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1	ENSMUST00000143791.8|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1
mm39_v1_chr6_+_86172196_86172224	1.43841	CCUUCAU	ENSMUST00000032066.13|Tgfa|ENSMUSG00000029999.15|transforming growth factor alpha
mm39_v1_chr8_-_122379631_122379652	1.41797	CCUUCAU	ENSMUST00000046386.5|Zcchc14|ENSMUSG00000061410.7|zinc finger, CCHC domain containing 14
mm39_v1_chr17_+_13980764_13980936	1.39693	CCUUCAU	ENSMUST00000139347.8|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor	ENSMUST00000156591.8|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor	ENSMUST00000170827.9|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor	ENSMUST00000139666.8|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor	ENSMUST00000137708.8|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor	ENSMUST00000137784.8|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor	ENSMUST00000150848.8|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor
mm39_v1_chr10_+_34359395_34359442	1.38153	CCUUCAU	ENSMUST00000019913.15|Frk|ENSMUSG00000019779.16|fyn-related kinase
mm39_v1_chr6_-_92920466_92920488	1.26178	CCUUCAU	ENSMUST00000113438.8|Adamts9|ENSMUSG00000030022.15|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9
mm39_v1_chr2_+_138098454_138098499	1.21273	CCUUCAU	ENSMUST00000091556.12|Btbd3|ENSMUSG00000062098.12|BTB (POZ) domain containing 3
mm39_v1_chr8_-_27664651_27664680	1.16871	CCUUCAU	ENSMUST00000054212.7|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)	ENSMUST00000033878.14|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)	ENSMUST00000209377.2|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)
mm39_v1_chr11_-_35871300_35871406	1.10435	CCUUCAU	ENSMUST00000018993.7|Wwc1|ENSMUSG00000018849.7|WW, C2 and coiled-coil domain containing 1
mm39_v1_chr1_+_182236728_182236750	0.939599	CCUUCAU	ENSMUST00000117245.2|Trp53bp2|ENSMUSG00000026510.11|transformation related protein 53 binding protein 2
mm39_v1_chr8_+_55407872_55407889	0.891787	CCUUCAU	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr1_+_187730018_187730031	0.842738	CCUUCAU	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr2_+_167922924_167922956	0.834815	CCUUCAU	ENSMUST00000052125.7|Pard6b|ENSMUSG00000044641.8|par-6 family cell polarity regulator beta
mm39_v1_chr15_-_60696790_60696929	0.818075	CCUUCAU	ENSMUST00000100635.5|Lratd2|ENSMUSG00000072568.5|LRAT domain containing 1
mm39_v1_chr2_-_73605684_73605723	0.809367	CCUUCAU	ENSMUST00000112024.10|Chn1|ENSMUSG00000056486.19|chimerin 1	ENSMUST00000180045.8|Chn1|ENSMUSG00000056486.19|chimerin 1
mm39_v1_chr18_+_32064358_32064401	0.774662	CCUUCAU	ENSMUST00000025254.9|Lims2|ENSMUSG00000024395.10|LIM and senescent cell antigen like domains 2
mm39_v1_chr6_+_72391283_72391302	0.739592	CCUUCAU	ENSMUST00000065906.9|Ggcx|ENSMUSG00000053460.9|gamma-glutamyl carboxylase
mm39_v1_chr9_+_50405817_50405833	0.708724	CCUUCAU	ENSMUST00000114474.8|Plet1|ENSMUSG00000032068.15|placenta expressed transcript 1	ENSMUST00000188047.2|Plet1|ENSMUSG00000032068.15|placenta expressed transcript 1
mm39_v1_chr16_+_4457805_4457842	0.707125	CCUUCAU	ENSMUST00000038770.4|Vasn|ENSMUSG00000039646.6|vasorin
mm39_v1_chr14_+_64181115_64181136	0.675155	CCUUCAU	ENSMUST00000079652.7|Sox7|ENSMUSG00000063060.7|SRY (sex determining region Y)-box 7
mm39_v1_chr19_+_4036562_4036661	0.651983	CCUUCAU	ENSMUST00000236224.2|Acy3|ENSMUSG00000024866.11|aspartoacylase (aminoacylase) 3	ENSMUST00000236510.2|Acy3|ENSMUSG00000024866.11|aspartoacylase (aminoacylase) 3	ENSMUST00000237910.2|Acy3|ENSMUSG00000024866.11|aspartoacylase (aminoacylase) 3	ENSMUST00000235612.2|Acy3|ENSMUSG00000024866.11|aspartoacylase (aminoacylase) 3	ENSMUST00000054030.8|Acy3|ENSMUSG00000024866.11|aspartoacylase (aminoacylase) 3
mm39_v1_chr5_+_89034666_89034684	0.617435	CCUUCAU	ENSMUST00000148750.8|Slc4a4|ENSMUSG00000060961.17|solute carrier family 4 (anion exchanger), member 4
mm39_v1_chr9_+_68561042_68561068	0.577046	CCUUCAU	ENSMUST00000034766.14|Rora|ENSMUSG00000032238.18|RAR-related orphan receptor alpha
mm39_v1_chr1_-_153208477_153208566	0.570178	CCUUCAU	ENSMUST00000027752.15|Lamc1|ENSMUSG00000026478.15|laminin, gamma 1
mm39_v1_chr9_+_47441471_47441671	0.546288	CCUUCAU	ENSMUST00000114548.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000152459.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000143026.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000085909.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000114547.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000239368.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000214542.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000034581.4|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1
mm39_v1_chr4_-_141966662_141966731	0.526209	CCUUCAU	ENSMUST00000036476.10|Kazn|ENSMUSG00000040606.15|kazrin, periplakin interacting protein
mm39_v1_chr18_+_74575567_74575608	0.499924	CCUUCAU	ENSMUST00000074157.13|Myo5b|ENSMUSG00000025885.19|myosin VB
mm39_v1_chr5_-_104169785_104169804	0.479415	CCUUCAU	ENSMUST00000031251.16|Hsd17b11|ENSMUSG00000029311.17|hydroxysteroid (17-beta) dehydrogenase 11
mm39_v1_chr4_+_150938376_150938525	0.477532	CCUUCAU	ENSMUST00000073600.9|Errfi1|ENSMUSG00000028967.11|ERBB receptor feedback inhibitor 1
mm39_v1_chr4_-_155430153_155430266	0.456294	CCUUCAU	ENSMUST00000103178.11|Prkcz|ENSMUSG00000029053.17|protein kinase C, zeta
mm39_v1_chr19_-_7460600_7460651	0.428627	CCUUCAU	ENSMUST00000235593.2|Rtn3|ENSMUSG00000024758.16|reticulon 3	ENSMUST00000088171.12|Rtn3|ENSMUSG00000024758.16|reticulon 3	ENSMUST00000065304.13|Rtn3|ENSMUSG00000024758.16|reticulon 3	ENSMUST00000025667.14|Rtn3|ENSMUSG00000024758.16|reticulon 3
mm39_v1_chr10_-_127457001_127457031	0.425135	CCUUCAU	ENSMUST00000049149.15|Lrp1|ENSMUSG00000040249.16|low density lipoprotein receptor-related protein 1
mm39_v1_chr7_+_112278520_112278532	0.416327	CCUUCAU	ENSMUST00000084705.13|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239442.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239404.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000059768.18|Tead1|ENSMUSG00000055320.19|TEA domain family member 1
mm39_v1_chr8_-_18791557_18791583	0.402646	CCUUCAU	ENSMUST00000033846.7|Angpt2|ENSMUSG00000031465.7|angiopoietin 2
mm39_v1_chr3_-_144275897_144275989	0.398043	CCUUCAU	ENSMUST00000043325.9|Hs2st1|ENSMUSG00000040151.10|heparan sulfate 2-O-sulfotransferase 1
mm39_v1_chr4_-_82423985_82424044	0.396467	CCUUCAU	ENSMUST00000107245.9|Nfib|ENSMUSG00000008575.18|nuclear factor I/B	ENSMUST00000107246.2|Nfib|ENSMUSG00000008575.18|nuclear factor I/B
mm39_v1_chr7_+_111825063_111825112	0.395737	CCUUCAU	ENSMUST00000050149.12|Mical2|ENSMUSG00000038244.15|microtubule associated monooxygenase, calponin and LIM domain containing 2
mm39_v1_chr1_-_168259465_168259474	0.38886	CCUUCAU	ENSMUST00000176540.8|Pbx1|ENSMUSG00000052534.16|pre B cell leukemia homeobox 1
mm39_v1_chr8_-_105122397_105122490	0.387949	CCUUCAU	ENSMUST00000179802.2|Cmtm4|ENSMUSG00000096188.2|CKLF-like MARVEL transmembrane domain containing 4
mm39_v1_chr7_-_110213968_110214135	0.37444	CCUUCAU	ENSMUST00000166020.8|Sbf2|ENSMUSG00000038371.16|SET binding factor 2	ENSMUST00000171218.8|Sbf2|ENSMUSG00000038371.16|SET binding factor 2	ENSMUST00000033058.14|Sbf2|ENSMUSG00000038371.16|SET binding factor 2	ENSMUST00000164759.8|Sbf2|ENSMUSG00000038371.16|SET binding factor 2
mm39_v1_chr4_-_58553311_58553357	0.355045	CCUUCAU	ENSMUST00000107571.8|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1	ENSMUST00000055018.11|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr9_-_43027809_43027866	0.351736	CCUUCAU	ENSMUST00000216126.2|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5	ENSMUST00000213544.2|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5	ENSMUST00000061833.6|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5
mm39_v1_chr3_-_104127676_104127695	0.350159	CCUUCAU	ENSMUST00000064371.14|Magi3|ENSMUSG00000052539.16|membrane associated guanylate kinase, WW and PDZ domain containing 3
mm39_v1_chrX_+_105070907_105070929	0.343982	CCUUCAU	ENSMUST00000055941.7|Atp7a|ENSMUSG00000033792.13|ATPase, Cu++ transporting, alpha polypeptide
mm39_v1_chr14_-_32110312_32110353	0.336034	CCUUCAU	ENSMUST00000100723.4|1700024G13Rik|ENSMUSG00000072473.5|RIKEN cDNA 1700024G13 gene
mm39_v1_chr9_+_106245792_106245839	0.331614	CCUUCAU	ENSMUST00000172306.3|Dusp7|ENSMUSG00000053716.10|dual specificity phosphatase 7
mm39_v1_chr3_+_37694094_37694229	0.325656	CCUUCAU	ENSMUST00000108109.8|Spry1|ENSMUSG00000037211.13|sprouty RTK signaling antagonist 1	ENSMUST00000038569.8|Spry1|ENSMUSG00000037211.13|sprouty RTK signaling antagonist 1	ENSMUST00000108107.2|Spry1|ENSMUSG00000037211.13|sprouty RTK signaling antagonist 1
mm39_v1_chr6_-_137626207_137626298	0.323674	CCUUCAU	ENSMUST00000134630.6|Eps8|ENSMUSG00000015766.15|epidermal growth factor receptor pathway substrate 8	ENSMUST00000058210.13|Eps8|ENSMUSG00000015766.15|epidermal growth factor receptor pathway substrate 8	ENSMUST00000111878.8|Eps8|ENSMUSG00000015766.15|epidermal growth factor receptor pathway substrate 8
mm39_v1_chr2_-_125624754_125624790	0.313096	CCUUCAU	ENSMUST00000053699.13|Secisbp2l|ENSMUSG00000035093.17|SECIS binding protein 2-like
mm39_v1_chr8_+_108020092_108020118	0.307146	CCUUCAU	ENSMUST00000169453.8|Nfat5|ENSMUSG00000003847.17|nuclear factor of activated T cells 5
mm39_v1_chr16_+_42727926_42728047	0.301023	CCUUCAU	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr5_+_32768515_32768589	0.295085	CCUUCAU	ENSMUST00000202543.4|Yes1|ENSMUSG00000014932.16|YES proto-oncogene 1, Src family tyrosine kinase	ENSMUST00000072311.13|Yes1|ENSMUSG00000014932.16|YES proto-oncogene 1, Src family tyrosine kinase
mm39_v1_chr16_+_90623630_90623645	0.286917	CCUUCAU	ENSMUST00000099548.10|Eva1c|ENSMUSG00000039903.19|eva-1 homolog C (C. elegans)
mm39_v1_chr2_-_65955338_65955486	0.282169	CCUUCAU	ENSMUST00000028378.4|Galnt3|ENSMUSG00000026994.10|polypeptide N-acetylgalactosaminyltransferase 3
mm39_v1_chr10_-_121883196_121883227	0.249945	CCUUCAU	ENSMUST00000020322.12|Srgap1|ENSMUSG00000020121.16|SLIT-ROBO Rho GTPase activating protein 1	ENSMUST00000081688.13|Srgap1|ENSMUSG00000020121.16|SLIT-ROBO Rho GTPase activating protein 1
mm39_v1_chrX_-_160942713_160942728	0.248748	CCUUCAU	ENSMUST00000087085.10|Nhs|ENSMUSG00000059493.14|NHS actin remodeling regulator
mm39_v1_chr6_+_55180366_55180444	0.242545	CCUUCAU	ENSMUST00000204842.3|Mindy4|ENSMUSG00000038022.12|MINDY lysine 48 deubiquitinase 4	ENSMUST00000053094.8|Mindy4|ENSMUSG00000038022.12|MINDY lysine 48 deubiquitinase 4
mm39_v1_chr12_+_82216193_82216220	0.235727	CCUUCAU	ENSMUST00000166429.9|Sipa1l1|ENSMUSG00000042700.17|signal-induced proliferation-associated 1 like 1	ENSMUST00000220963.2|Sipa1l1|ENSMUSG00000042700.17|signal-induced proliferation-associated 1 like 1
mm39_v1_chr8_-_103512274_103512408	0.235554	CCUUCAU	ENSMUST00000075190.5|Cdh11|ENSMUSG00000031673.7|cadherin 11
mm39_v1_chr14_+_27150750_27150830	0.233369	CCUUCAU	ENSMUST00000022450.6|Tasor|ENSMUSG00000040651.10|transcription activation suppressor
mm39_v1_chr16_+_32734464_32734512	0.218929	CCUUCAU	ENSMUST00000023491.13|Lrch3|ENSMUSG00000022801.14|leucine-rich repeats and calponin homology (CH) domain containing 3	ENSMUST00000170899.8|Lrch3|ENSMUSG00000022801.14|leucine-rich repeats and calponin homology (CH) domain containing 3	ENSMUST00000170201.8|Lrch3|ENSMUSG00000022801.14|leucine-rich repeats and calponin homology (CH) domain containing 3	ENSMUST00000165616.8|Lrch3|ENSMUSG00000022801.14|leucine-rich repeats and calponin homology (CH) domain containing 3	ENSMUST00000135193.9|Lrch3|ENSMUSG00000022801.14|leucine-rich repeats and calponin homology (CH) domain containing 3
mm39_v1_chr13_+_73615316_73615435	0.21637	CCUUCAU	ENSMUST00000022099.15|Lpcat1|ENSMUSG00000021608.16|lysophosphatidylcholine acyltransferase 1
mm39_v1_chr15_-_50753061_50753118	0.212184	CCUUCAU	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr11_-_11987391_11987407	0.201423	CCUUCAU	ENSMUST00000093321.12|Grb10|ENSMUSG00000020176.18|growth factor receptor bound protein 10
mm39_v1_chrX_+_158038778_158038894	0.201039	CCUUCAU	ENSMUST00000126686.8|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3	ENSMUST00000033671.13|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chrX_-_110606766_110606834	0.200557	CCUUCAU	ENSMUST00000113422.9|Hdx|ENSMUSG00000034551.13|highly divergent homeobox	ENSMUST00000038472.7|Hdx|ENSMUSG00000034551.13|highly divergent homeobox
mm39_v1_chr2_-_160714473_160714542	0.200528	CCUUCAU	ENSMUST00000103111.9|Zhx3|ENSMUSG00000035877.18|zinc fingers and homeoboxes 3
mm39_v1_chr10_+_82695013_82695051	0.198978	CCUUCAU	ENSMUST00000020484.9|Txnrd1|ENSMUSG00000020250.12|thioredoxin reductase 1	ENSMUST00000219962.3|Txnrd1|ENSMUSG00000020250.12|thioredoxin reductase 1
mm39_v1_chr19_-_28657477_28657523	0.1966	CCUUCAU	ENSMUST00000162022.8|Glis3|ENSMUSG00000052942.14|GLIS family zinc finger 3	ENSMUST00000112612.9|Glis3|ENSMUSG00000052942.14|GLIS family zinc finger 3
mm39_v1_chr16_+_38562616_38562683	0.19637	CCUUCAU	ENSMUST00000023482.13|B4galt4|ENSMUSG00000022793.18|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	ENSMUST00000114712.8|B4galt4|ENSMUSG00000022793.18|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	ENSMUST00000231655.2|B4galt4|ENSMUSG00000022793.18|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4
mm39_v1_chr5_+_43390513_43390580	0.19269	CCUUCAU	ENSMUST00000166713.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000169035.8|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000114065.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2
mm39_v1_chrX_+_98864627_98864627	0.189954	CCUUCAU	ENSMUST00000096363.3|Tmem28|ENSMUSG00000071719.3|transmembrane protein 28
mm39_v1_chr4_+_129941633_129941694	0.183978	CCUUCAU	ENSMUST00000044565.15|Col16a1|ENSMUSG00000040690.16|collagen, type XVI, alpha 1	ENSMUST00000132251.2|Col16a1|ENSMUSG00000040690.16|collagen, type XVI, alpha 1
mm39_v1_chrX_+_97192356_97192388	0.182308	CCUUCAU	ENSMUST00000052837.9|Ar|ENSMUSG00000046532.9|androgen receptor
mm39_v1_chr3_-_153430741_153430816	0.181715	CCUUCAU	ENSMUST00000064460.7|St6galnac3|ENSMUSG00000052544.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	ENSMUST00000200397.5|St6galnac3|ENSMUSG00000052544.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
mm39_v1_chr18_+_3507917_3507943	0.176661	CCUUCAU	ENSMUST00000025075.3|Bambi|ENSMUSG00000024232.3|BMP and activin membrane-bound inhibitor
mm39_v1_chr5_-_38842084_38842169	0.163337	CCUUCAU	ENSMUST00000057258.11|Zfp518b|ENSMUSG00000046572.11|zinc finger protein 518B	ENSMUST00000178760.2|Zfp518b|ENSMUSG00000046572.11|zinc finger protein 518B	ENSMUST00000179555.8|Zfp518b|ENSMUSG00000046572.11|zinc finger protein 518B	ENSMUST00000180214.8|Zfp518b|ENSMUSG00000046572.11|zinc finger protein 518B
mm39_v1_chr14_+_122344441_122344456	0.162874	CCUUCAU	ENSMUST00000026624.11|Tm9sf2|ENSMUSG00000025544.14|transmembrane 9 superfamily member 2
mm39_v1_chr3_+_92158054_92158054	0.162593	CCUUCAU	ENSMUST00000071805.4|Sprr2a2|ENSMUSG00000068893.6|small proline-rich protein 2A2
mm39_v1_chr8_+_40760499_40760499	0.162039	CCUUCAU	ENSMUST00000068999.14|Micu3|ENSMUSG00000039478.16|mitochondrial calcium uptake family, member 3
mm39_v1_chr18_-_20247824_20247839	0.160788	CCUUCAU	ENSMUST00000038710.6|Dsc1|ENSMUSG00000044322.8|desmocollin 1
mm39_v1_chr13_-_99027544_99027571	0.159057	CCUUCAU	ENSMUST00000109399.9|Tnpo1|ENSMUSG00000009470.18|transportin 1
mm39_v1_chrX_-_47297436_47297568	0.15846	CCUUCAU	ENSMUST00000037960.11|Zdhhc9|ENSMUSG00000036985.13|zinc finger, DHHC domain containing 9
mm39_v1_chrX_-_50294652_50294716	0.157889	CCUUCAU	ENSMUST00000114875.8|Mbnl3|ENSMUSG00000036109.18|muscleblind like splicing factor 3
mm39_v1_chr19_-_32365862_32365912	0.156672	CCUUCAU	ENSMUST00000099514.10|Sgms1|ENSMUSG00000040451.19|sphingomyelin synthase 1
mm39_v1_chr15_-_53209513_53209565	0.154408	CCUUCAU	ENSMUST00000077273.9|Ext1|ENSMUSG00000061731.10|exostosin glycosyltransferase 1
mm39_v1_chr13_-_39144800_39144859	0.154002	CCUUCAU	ENSMUST00000225432.2|Slc35b3|ENSMUSG00000021432.16|solute carrier family 35, member B3	ENSMUST00000021870.12|Slc35b3|ENSMUSG00000021432.16|solute carrier family 35, member B3
mm39_v1_chr2_-_9883391_9883418	0.153873	CCUUCAU	ENSMUST00000102976.4|Gata3|ENSMUSG00000015619.11|GATA binding protein 3
mm39_v1_chr3_-_107667499_107667572	0.152258	CCUUCAU	ENSMUST00000153114.2|Csf1|ENSMUSG00000014599.11|colony stimulating factor 1 (macrophage)	ENSMUST00000118593.8|Csf1|ENSMUSG00000014599.11|colony stimulating factor 1 (macrophage)	ENSMUST00000120243.8|Csf1|ENSMUSG00000014599.11|colony stimulating factor 1 (macrophage)
mm39_v1_chr8_-_112120442_112120465	0.151966	CCUUCAU	ENSMUST00000038475.9|Fa2h|ENSMUSG00000033579.17|fatty acid 2-hydroxylase
mm39_v1_chr2_-_45003270_45003296	0.151943	CCUUCAU	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr14_-_78774201_78774292	0.151616	CCUUCAU	ENSMUST00000123853.9|Akap11|ENSMUSG00000022016.18|A kinase (PRKA) anchor protein 11
mm39_v1_chr19_-_59932079_59932110	0.150798	CCUUCAU	ENSMUST00000171986.8|Rab11fip2|ENSMUSG00000040022.15|RAB11 family interacting protein 2 (class I)
mm39_v1_chr14_+_76741918_76741970	0.149801	CCUUCAU	ENSMUST00000022587.10|Tsc22d1|ENSMUSG00000022010.20|TSC22 domain family, member 1	ENSMUST00000134109.2|Tsc22d1|ENSMUSG00000022010.20|TSC22 domain family, member 1
mm39_v1_chr11_-_50216426_50216500	0.144697	CCUUCAU	ENSMUST00000179865.8|Canx|ENSMUSG00000020368.16|calnexin	ENSMUST00000020637.9|Canx|ENSMUSG00000020368.16|calnexin
mm39_v1_chrX_-_95000496_95000561	0.143425	CCUUCAU	ENSMUST00000079987.13|Las1l|ENSMUSG00000057421.13|LAS1-like (S. cerevisiae)	ENSMUST00000113864.3|Las1l|ENSMUSG00000057421.13|LAS1-like (S. cerevisiae)
mm39_v1_chr6_+_86826470_86826577	0.138798	CCUUCAU	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chr2_-_118380149_118380168	0.135882	CCUUCAU	ENSMUST00000090219.13|Bmf|ENSMUSG00000040093.17|BCL2 modifying factor
mm39_v1_chrX_+_161684563_161684640	0.13311	CCUUCAU	ENSMUST00000112303.8|Ctps2|ENSMUSG00000031360.15|cytidine 5'-triphosphate synthase 2	ENSMUST00000033727.14|Ctps2|ENSMUSG00000031360.15|cytidine 5'-triphosphate synthase 2
mm39_v1_chr4_-_57143437_57143626	0.132038	CCUUCAU	ENSMUST00000095076.10|Epb41l4b|ENSMUSG00000028434.13|erythrocyte membrane protein band 4.1 like 4b	ENSMUST00000030142.4|Epb41l4b|ENSMUSG00000028434.13|erythrocyte membrane protein band 4.1 like 4b
mm39_v1_chr17_-_64638887_64638951	0.128242	CCUUCAU	ENSMUST00000172818.8|Pja2|ENSMUSG00000024083.17|praja ring finger ubiquitin ligase 2
mm39_v1_chr15_-_35155896_35155959	0.127361	CCUUCAU	ENSMUST00000067033.8|Stk3|ENSMUSG00000022329.16|serine/threonine kinase 3	ENSMUST00000018476.14|Stk3|ENSMUSG00000022329.16|serine/threonine kinase 3
mm39_v1_chr12_-_81827893_81827949	0.124257	CCUUCAU	ENSMUST00000035987.9|Map3k9|ENSMUSG00000042724.9|mitogen-activated protein kinase kinase kinase 9
mm39_v1_chr8_-_68427217_68427248	0.122757	CCUUCAU	ENSMUST00000098696.10|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3	ENSMUST00000038959.16|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3	ENSMUST00000093469.11|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3
mm39_v1_chr6_-_134543876_134543959	0.120885	CCUUCAU	ENSMUST00000032322.15|Lrp6|ENSMUSG00000030201.16|low density lipoprotein receptor-related protein 6	ENSMUST00000126836.4|Lrp6|ENSMUSG00000030201.16|low density lipoprotein receptor-related protein 6
mm39_v1_chr3_-_115800989_115801060	0.119522	CCUUCAU	ENSMUST00000067485.4|Slc30a7|ENSMUSG00000054414.5|solute carrier family 30 (zinc transporter), member 7
mm39_v1_chr8_-_48443525_48443612	0.118843	CCUUCAU	ENSMUST00000057561.9|Wwc2|ENSMUSG00000031563.9|WW, C2 and coiled-coil domain containing 2
mm39_v1_chr3_+_58484057_58484125	0.117415	CCUUCAU	ENSMUST00000107924.3|Selenot|ENSMUSG00000075700.11|selenoprotein T
mm39_v1_chr1_+_171954316_171954349	0.116858	CCUUCAU	ENSMUST00000075895.9|Pex19|ENSMUSG00000003464.14|peroxisomal biogenesis factor 19	ENSMUST00000111252.4|Pex19|ENSMUSG00000003464.14|peroxisomal biogenesis factor 19
mm39_v1_chr1_+_121358778_121358853	0.108291	CCUUCAU	ENSMUST00000036025.16|Ccdc93|ENSMUSG00000026339.19|coiled-coil domain containing 93	ENSMUST00000112621.2|Ccdc93|ENSMUSG00000026339.19|coiled-coil domain containing 93
mm39_v1_chr4_-_154721288_154721330	0.1061	CCUUCAU	ENSMUST00000030902.13|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105637.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000070313.14|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105636.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105638.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000097759.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000124771.2|Prdm16|ENSMUSG00000039410.17|PR domain containing 16
mm39_v1_chr9_+_65536892_65536965	0.102684	CCUUCAU	ENSMUST00000169003.8|Rbpms2|ENSMUSG00000032387.16|RNA binding protein with multiple splicing 2
mm39_v1_chr13_+_56850795_56850925	0.101523	CCUUCAU	ENSMUST00000069557.14|Smad5|ENSMUSG00000021540.17|SMAD family member 5	ENSMUST00000109876.8|Smad5|ENSMUSG00000021540.17|SMAD family member 5
mm39_v1_chr10_-_62859661_62859686	0.0974114	CCUUCAU	ENSMUST00000020263.14|Hnrnph3|ENSMUSG00000020069.17|heterogeneous nuclear ribonucleoprotein H3	ENSMUST00000118898.8|Hnrnph3|ENSMUSG00000020069.17|heterogeneous nuclear ribonucleoprotein H3
mm39_v1_chr7_+_109617456_109617481	0.0970251	CCUUCAU	ENSMUST00000084731.5|Ipo7|ENSMUSG00000066232.5|importin 7
mm39_v1_chr2_+_74656145_74656223	0.0958424	CCUUCAU	ENSMUST00000028511.8|Mtx2|ENSMUSG00000027099.10|metaxin 2
mm39_v1_chr11_-_106679312_106679358	0.095769	CCUUCAU	ENSMUST00000021062.12|Ddx5|ENSMUSG00000020719.15|DEAD box helicase 5
mm39_v1_chr18_+_32296126_32296249	0.0947705	CCUUCAU	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chr3_+_92123106_92123227	0.0944697	CCUUCAU	ENSMUST00000074449.7|Sprr2a1|ENSMUSG00000078664.3|small proline-rich protein 2A1	ENSMUST00000090871.3|Sprr2a2|ENSMUSG00000068893.6|small proline-rich protein 2A2
mm39_v1_chr3_-_19217174_19217249	0.0932655	CCUUCAU	ENSMUST00000029125.10|Armc1|ENSMUSG00000027599.10|armadillo repeat containing 1
mm39_v1_chr5_+_91222470_91222487	0.0875802	CCUUCAU	ENSMUST00000031324.6|Ereg|ENSMUSG00000029377.6|epiregulin
mm39_v1_chr16_+_4704103_4704133	0.0841502	CCUUCAU	ENSMUST00000023159.10|Mgrn1|ENSMUSG00000022517.18|mahogunin, ring finger 1	ENSMUST00000070658.16|Mgrn1|ENSMUSG00000022517.18|mahogunin, ring finger 1	ENSMUST00000229038.2|Mgrn1|ENSMUSG00000022517.18|mahogunin, ring finger 1
mm39_v1_chr1_+_178626003_178626032	0.0804076	CCUUCAU	ENSMUST00000160789.2|Kif26b|ENSMUSG00000026494.13|kinesin family member 26B
mm39_v1_chr15_-_93173032_93173060	0.0757037	CCUUCAU	ENSMUST00000057896.5|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000049484.13|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000230063.2|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1
mm39_v1_chr11_+_83832888_83832958	0.0740943	CCUUCAU	ENSMUST00000049257.8|Ddx52|ENSMUSG00000020677.8|DExD box helicase 52
mm39_v1_chr4_-_126861918_126861947	0.0739011	CCUUCAU	ENSMUST00000106108.9|Zmym4|ENSMUSG00000042446.17|zinc finger, MYM-type 4
mm39_v1_chr11_+_105956867_105956926	0.0733591	CCUUCAU	ENSMUST00000002048.8|Taco1|ENSMUSG00000001983.8|translational activator of mitochondrially encoded cytochrome c oxidase I
mm39_v1_chr15_-_78657640_78657689	0.0716152	CCUUCAU	ENSMUST00000018313.6|Mfng|ENSMUSG00000018169.13|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm39_v1_chr4_+_120262455_120262625	0.0715031	CCUUCAU	ENSMUST00000000087.13|Scmh1|ENSMUSG00000000085.17|sex comb on midleg homolog 1	ENSMUST00000132116.8|Scmh1|ENSMUSG00000000085.17|sex comb on midleg homolog 1
mm39_v1_chr6_+_4600839_4600960	0.0713341	CCUUCAU	ENSMUST00000015333.12|Casd1|ENSMUSG00000015189.13|CAS1 domain containing 1	ENSMUST00000181734.8|Casd1|ENSMUSG00000015189.13|CAS1 domain containing 1
mm39_v1_chr7_+_66872321_66872383	0.0690242	CCUUCAU	ENSMUST00000207757.2|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000058771.13|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000207823.2|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000208698.2|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000208998.2|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000179106.3|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4
mm39_v1_chr19_+_59446804_59446883	0.0644209	CCUUCAU	ENSMUST00000062216.4|Emx2|ENSMUSG00000043969.5|empty spiracles homeobox 2
mm39_v1_chr7_+_90739904_90739959	0.0612862	CCUUCAU	ENSMUST00000107196.10|Dlg2|ENSMUSG00000052572.20|discs large MAGUK scaffold protein 2	ENSMUST00000074273.10|Dlg2|ENSMUSG00000052572.20|discs large MAGUK scaffold protein 2
mm39_v1_chr1_+_151220222_151220280	0.0607039	CCUUCAU	ENSMUST00000023918.13|Ivns1abp|ENSMUSG00000023150.15|influenza virus NS1A binding protein	ENSMUST00000111887.10|Ivns1abp|ENSMUSG00000023150.15|influenza virus NS1A binding protein	ENSMUST00000097543.8|Ivns1abp|ENSMUSG00000023150.15|influenza virus NS1A binding protein
mm39_v1_chr10_-_70435114_70435132	0.0603626	CCUUCAU	ENSMUST00000046513.10|Phyhipl|ENSMUSG00000037747.10|phytanoyl-CoA hydroxylase interacting protein-like
mm39_v1_chr4_-_148529187_148529241	0.0565916	CCUUCAU	ENSMUST00000051633.3|Ubiad1|ENSMUSG00000047719.3|UbiA prenyltransferase domain containing 1
mm39_v1_chr9_+_35332837_35332913	0.0564957	CCUUCAU	ENSMUST00000119129.10|Cdon|ENSMUSG00000038119.16|cell adhesion molecule-related/down-regulated by oncogenes
mm39_v1_chr1_-_10302895_10302895	0.055977	CCUUCAU	ENSMUST00000088615.11|Arfgef1|ENSMUSG00000067851.12|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	ENSMUST00000131556.2|Arfgef1|ENSMUSG00000067851.12|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
mm39_v1_chr7_-_73191484_73191503	0.0559065	CCUUCAU	ENSMUST00000197642.2|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000026895.14|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000169922.9|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2
mm39_v1_chr19_+_47568041_47568164	0.052788	CCUUCAU	ENSMUST00000026043.12|Slk|ENSMUSG00000025060.16|STE20-like kinase
mm39_v1_chr12_-_4527138_4527196	0.0514466	CCUUCAU	ENSMUST00000085814.5|Ncoa1|ENSMUSG00000020647.11|nuclear receptor coactivator 1
mm39_v1_chr14_+_59438658_59438716	0.0512792	CCUUCAU	ENSMUST00000173547.8|Rcbtb1|ENSMUSG00000035469.18|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	ENSMUST00000043227.13|Rcbtb1|ENSMUSG00000035469.18|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	ENSMUST00000022551.14|Rcbtb1|ENSMUSG00000035469.18|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
mm39_v1_chr2_+_158251761_158251783	0.0499089	CCUUCAU	ENSMUST00000109486.9|Ralgapb|ENSMUSG00000027652.16|Ral GTPase activating protein, beta subunit (non-catalytic)	ENSMUST00000046274.12|Ralgapb|ENSMUSG00000027652.16|Ral GTPase activating protein, beta subunit (non-catalytic)
mm39_v1_chr19_-_41252370_41252447	0.0490548	CCUUCAU	ENSMUST00000237871.2|Tm9sf3|ENSMUSG00000025016.12|transmembrane 9 superfamily member 3	ENSMUST00000025989.10|Tm9sf3|ENSMUSG00000025016.12|transmembrane 9 superfamily member 3
mm39_v1_chr15_-_103275190_103275225	0.0484891	CCUUCAU	ENSMUST00000023128.8|Itga5|ENSMUSG00000000555.9|integrin alpha 5 (fibronectin receptor alpha)
mm39_v1_chr1_+_40305738_40305843	0.0448387	CCUUCAU	ENSMUST00000114795.3|Il1r1|ENSMUSG00000026072.13|interleukin 1 receptor, type I
mm39_v1_chr6_+_37847721_37847892	0.0414971	CCUUCAU	ENSMUST00000031859.14|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24	ENSMUST00000120428.8|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24
mm39_v1_chr17_+_79244553_79244612	0.0411582	CCUUCAU	ENSMUST00000024887.6|Ndufaf7|ENSMUSG00000024082.6|NADH:ubiquinone oxidoreductase complex assembly factor 7	ENSMUST00000233068.2|Ndufaf7|ENSMUSG00000024082.6|NADH:ubiquinone oxidoreductase complex assembly factor 7	ENSMUST00000233777.2|Ndufaf7|ENSMUSG00000024082.6|NADH:ubiquinone oxidoreductase complex assembly factor 7
mm39_v1_chr18_+_67907946_67907985	0.0393949	CCUUCAU	ENSMUST00000025421.9|Seh1l|ENSMUSG00000079614.5|SEH1-like (S. cerevisiae
mm39_v1_chr17_+_26934617_26934698	0.0344063	CCUUCAU	ENSMUST00000062519.14|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000144221.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000142539.8|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000151681.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor
mm39_v1_chr3_+_41510160_41510195	0.0305167	CCUUCAU	ENSMUST00000026865.15|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1	ENSMUST00000194181.6|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1	ENSMUST00000195846.6|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1
mm39_v1_chr9_-_42383494_42383561	0.0301434	CCUUCAU	ENSMUST00000128959.8|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like	ENSMUST00000066148.12|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like	ENSMUST00000138506.8|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like
mm39_v1_chr13_-_49121461_49121603	0.0270631	CCUUCAU	ENSMUST00000060805.7|Fam120a|ENSMUSG00000038014.8|family with sequence similarity 120, member A
mm39_v1_chr8_-_80126120_80126168	0.0236127	CCUUCAU	ENSMUST00000066091.14|Smad1|ENSMUSG00000031681.17|SMAD family member 1	ENSMUST00000109885.8|Smad1|ENSMUSG00000031681.17|SMAD family member 1
mm39_v1_chr1_+_176642226_176642226	0.0216792	CCUUCAU	ENSMUST00000056773.15|Sdccag8|ENSMUSG00000026504.18|serologically defined colon cancer antigen 8	ENSMUST00000027785.15|Sdccag8|ENSMUSG00000026504.18|serologically defined colon cancer antigen 8
mm39_v1_chr2_-_73143045_73143068	0.020578	CCUUCAU	ENSMUST00000058615.10|Cir1|ENSMUSG00000041777.13|corepressor interacting with RBPJ, 1
mm39_v1_chr5_+_93241287_93241310	0.00825528	CCUUCAU	ENSMUST00000074733.11|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000201700.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202196.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202308.4|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chr6_-_11907392_11907496	0.00678671	CCUUCAU	ENSMUST00000204084.3|Ndufa4|ENSMUSG00000029632.8|Ndufa4, mitochondrial complex associated	ENSMUST00000031637.8|Ndufa4|ENSMUSG00000029632.8|Ndufa4, mitochondrial complex associated	ENSMUST00000204978.3|Ndufa4|ENSMUSG00000029632.8|Ndufa4, mitochondrial complex associated	ENSMUST00000204714.2|Ndufa4|ENSMUSG00000029632.8|Ndufa4, mitochondrial complex associated
mm39_v1_chr11_+_49916136_49916224	0.00488786	CCUUCAU	ENSMUST00000054684.14|Rnf130|ENSMUSG00000020376.18|ring finger protein 130	ENSMUST00000238748.2|Rnf130|ENSMUSG00000020376.18|ring finger protein 130	ENSMUST00000102776.5|Rnf130|ENSMUSG00000020376.18|ring finger protein 130
mm39_v1_chr13_-_65260716_65260803	0.00316531	CCUUCAU	ENSMUST00000054730.10|Mfsd14b|ENSMUSG00000038212.17|major facilitator superfamily domain containing 14B	ENSMUST00000155487.8|Mfsd14b|ENSMUSG00000038212.17|major facilitator superfamily domain containing 14B
mm39_v1_chr2_+_119727689_119727786	0.0031298	CCUUCAU	ENSMUST00000046717.13|Mga|ENSMUSG00000033943.16|MAX gene associated	ENSMUST00000079934.12|Mga|ENSMUSG00000033943.16|MAX gene associated	ENSMUST00000110774.8|Mga|ENSMUSG00000033943.16|MAX gene associated	ENSMUST00000110773.9|Mga|ENSMUSG00000033943.16|MAX gene associated	ENSMUST00000156510.2|Mga|ENSMUSG00000033943.16|MAX gene associated
