mm39_v1_chr2_+_32511762_32511786	2.56863	CCUUGGC	ENSMUST00000113278.9|Ak1|ENSMUSG00000026817.15|adenylate kinase 1
mm39_v1_chr4_+_129030710_129030792	1.97679	CCUUGGC	ENSMUST00000102600.4|Fndc5|ENSMUSG00000001334.10|fibronectin type III domain containing 5
mm39_v1_chr4_+_141148068_141148109	1.27203	CCUUGGC	ENSMUST00000102486.5|Hspb7|ENSMUSG00000006221.8|heat shock protein family, member 7 (cardiovascular)
mm39_v1_chr4_+_48663504_48663525	1.15478	CCUUGGC	ENSMUST00000030033.5|Cavin4|ENSMUSG00000028348.8|caveolae associated 4
mm39_v1_chr15_+_102875229_102875248	0.855114	CCUUGGC	ENSMUST00000001699.8|Hoxc10|ENSMUSG00000022484.8|homeobox C10
mm39_v1_chr7_-_136916123_136916174	0.840524	CCUUGGC	ENSMUST00000106118.10|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000168203.2|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000169486.9|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000033378.13|Ebf3|ENSMUSG00000010476.15|early B cell factor 3
mm39_v1_chr1_-_72914036_72914050	0.784301	CCUUGGC	ENSMUST00000027377.9|Igfbp5|ENSMUSG00000026185.9|insulin-like growth factor binding protein 5
mm39_v1_chr3_+_101993731_101993763	0.737826	CCUUGGC	ENSMUST00000029454.12|Casq2|ENSMUSG00000027861.14|calsequestrin 2
mm39_v1_chr1_+_75522902_75522957	0.709611	CCUUGGC	ENSMUST00000124341.8|Slc4a3|ENSMUSG00000006576.17|solute carrier family 4 (anion exchanger), member 3
mm39_v1_chr1_-_135032972_135033014	0.658325	CCUUGGC	ENSMUST00000044828.14|Lgr6|ENSMUSG00000042793.14|leucine-rich repeat-containing G protein-coupled receptor 6
mm39_v1_chr19_+_10366753_10366847	0.63742	CCUUGGC	ENSMUST00000169121.9|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000076968.11|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000235479.2|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000223586.2|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000235784.2|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000224135.3|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000225452.3|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000237366.2|Syt7|ENSMUSG00000024743.17|synaptotagmin VII
mm39_v1_chr16_-_92156312_92156356	0.629304	CCUUGGC	ENSMUST00000051705.7|Kcne1|ENSMUSG00000039639.8|potassium voltage-gated channel, Isk-related subfamily, member 1
mm39_v1_chr3_+_151143524_151143551	0.625344	CCUUGGC	ENSMUST00000046977.12|Adgrl4|ENSMUSG00000039167.13|adhesion G protein-coupled receptor L4
mm39_v1_chr12_-_8550003_8550017	0.608935	CCUUGGC	ENSMUST00000067384.6|Rhob|ENSMUSG00000054364.6|ras homolog family member B
mm39_v1_chr7_+_26958150_26958240	0.586297	CCUUGGC	ENSMUST00000079258.7|Numbl|ENSMUSG00000063160.13|numb-like
mm39_v1_chr2_+_27776428_27776452	0.572872	CCUUGGC	ENSMUST00000028280.14|Col5a1|ENSMUSG00000026837.17|collagen, type V, alpha 1
mm39_v1_chr11_-_116545071_116545151	0.56416	CCUUGGC	ENSMUST00000021166.6|Cygb|ENSMUSG00000020810.6|cytoglobin
mm39_v1_chr1_+_164624200_164624218	0.558299	CCUUGGC	ENSMUST00000027861.6|Dpt|ENSMUSG00000026574.6|dermatopontin
mm39_v1_chr4_-_81360993_81361073	0.552466	CCUUGGC	ENSMUST00000107262.8|Mpdz|ENSMUSG00000028402.19|multiple PDZ domain crumbs cell polarity complex component	ENSMUST00000102830.10|Mpdz|ENSMUSG00000028402.19|multiple PDZ domain crumbs cell polarity complex component
mm39_v1_chr2_-_105229653_105229664	0.539751	CCUUGGC	ENSMUST00000006128.7|Rcn1|ENSMUSG00000005973.7|reticulocalbin 1
mm39_v1_chr11_+_73051228_73051411	0.528273	CCUUGGC	ENSMUST00000006104.10|P2rx5|ENSMUSG00000005950.15|purinergic receptor P2X, ligand-gated ion channel, 5	ENSMUST00000135202.8|P2rx5|ENSMUSG00000005950.15|purinergic receptor P2X, ligand-gated ion channel, 5	ENSMUST00000136894.3|P2rx5|ENSMUSG00000005950.15|purinergic receptor P2X, ligand-gated ion channel, 5
mm39_v1_chr2_+_106523532_106523624	0.52698	CCUUGGC	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chr10_-_80850712_80850779	0.520594	CCUUGGC	ENSMUST00000126317.2|Gng7|ENSMUSG00000048240.15|guanine nucleotide binding protein (G protein), gamma 7	ENSMUST00000092285.10|Gng7|ENSMUSG00000048240.15|guanine nucleotide binding protein (G protein), gamma 7	ENSMUST00000117805.8|Gng7|ENSMUSG00000048240.15|guanine nucleotide binding protein (G protein), gamma 7
mm39_v1_chr4_+_123127349_123127349	0.51821	CCUUGGC	ENSMUST00000040821.5|Heyl|ENSMUSG00000032744.5|hairy/enhancer-of-split related with YRPW motif-like
mm39_v1_chr17_+_87270504_87270537	0.517405	CCUUGGC	ENSMUST00000024956.15|Rhoq|ENSMUSG00000024143.16|ras homolog family member Q
mm39_v1_chr12_+_31315270_31315321	0.500034	CCUUGGC	ENSMUST00000002979.16|Lamb1|ENSMUSG00000002900.18|laminin B1	ENSMUST00000239496.2|Lamb1|ENSMUSG00000002900.18|laminin B1	ENSMUST00000170495.3|Lamb1|ENSMUSG00000002900.18|laminin B1
mm39_v1_chrX_+_165021897_165021909	0.498129	CCUUGGC	ENSMUST00000112235.8|Gpm6b|ENSMUSG00000031342.18|glycoprotein m6b
mm39_v1_chrX_+_6489313_6489349	0.485451	CCUUGGC	ENSMUST00000089520.3|Shroom4|ENSMUSG00000068270.16|shroom family member 4
mm39_v1_chrX_+_104807868_104807885	0.441652	CCUUGGC	ENSMUST00000033581.4|Fgf16|ENSMUSG00000031230.4|fibroblast growth factor 16
mm39_v1_chr2_-_152775122_152775138	0.43308	CCUUGGC	ENSMUST00000099200.3|Foxs1|ENSMUSG00000074676.3|forkhead box S1
mm39_v1_chr4_+_97665843_97665870	0.415622	CCUUGGC	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr11_-_61470462_61470533	0.412284	CCUUGGC	ENSMUST00000147501.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000146455.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108711.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108712.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000001063.15|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108713.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000179936.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000178202.8|Epn2|ENSMUSG00000001036.18|epsin 2
mm39_v1_chr11_+_68393845_68393902	0.409676	CCUUGGC	ENSMUST00000102613.8|Pik3r6|ENSMUSG00000046207.15|phosphoinositide-3-kinase regulatory subunit 5	ENSMUST00000060441.7|Pik3r6|ENSMUSG00000046207.15|phosphoinositide-3-kinase regulatory subunit 5
mm39_v1_chr2_+_49956441_49956481	0.399514	CCUUGGC	ENSMUST00000112712.10|Lypd6|ENSMUSG00000050447.16|LY6/PLAUR domain containing 6	ENSMUST00000128451.8|Lypd6|ENSMUSG00000050447.16|LY6/PLAUR domain containing 6	ENSMUST00000053208.14|Lypd6|ENSMUSG00000050447.16|LY6/PLAUR domain containing 6
mm39_v1_chr15_-_102630589_102630613	0.389687	CCUUGGC	ENSMUST00000023818.11|Calcoco1|ENSMUSG00000023055.11|calcium binding and coiled coil domain 1
mm39_v1_chr11_-_18968979_18968990	0.376308	CCUUGGC	ENSMUST00000144988.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr6_+_86826470_86826577	0.362014	CCUUGGC	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chr13_+_54519161_54519173	0.360687	CCUUGGC	ENSMUST00000026985.9|Cplx2|ENSMUSG00000025867.9|complexin 2
mm39_v1_chr11_-_6015736_6015755	0.360173	CCUUGGC	ENSMUST00000002817.12|Camk2b|ENSMUSG00000057897.15|calcium/calmodulin-dependent protein kinase II, beta	ENSMUST00000109813.9|Camk2b|ENSMUSG00000057897.15|calcium/calmodulin-dependent protein kinase II, beta	ENSMUST00000090443.10|Camk2b|ENSMUSG00000057897.15|calcium/calmodulin-dependent protein kinase II, beta
mm39_v1_chrX_+_72108393_72108393	0.357367	CCUUGGC	ENSMUST00000060418.8|Pnma3|ENSMUSG00000046287.8|paraneoplastic antigen MA3
mm39_v1_chr6_-_118174679_118174704	0.339099	CCUUGGC	ENSMUST00000088790.9|Ret|ENSMUSG00000030110.14|ret proto-oncogene
mm39_v1_chr2_+_38821987_38822019	0.332868	CCUUGGC	ENSMUST00000057279.6|Olfml2a|ENSMUSG00000046618.8|olfactomedin-like 2A
mm39_v1_chr6_-_145811028_145811085	0.330684	CCUUGGC	ENSMUST00000111703.2|Bhlhe41|ENSMUSG00000030256.12|basic helix-loop-helix family, member e41
mm39_v1_chr9_-_43017249_43017322	0.326856	CCUUGGC	ENSMUST00000165665.9|Arhgef12|ENSMUSG00000059495.15|Rho guanine nucleotide exchange factor (GEF) 12
mm39_v1_chr4_-_131565542_131565603	0.31698	CCUUGGC	ENSMUST00000030741.9|Ptpru|ENSMUSG00000028909.18|protein tyrosine phosphatase, receptor type, U	ENSMUST00000105987.9|Ptpru|ENSMUSG00000028909.18|protein tyrosine phosphatase, receptor type, U
mm39_v1_chr1_-_132470672_132470692	0.31531	CCUUGGC	ENSMUST00000086521.11|Cntn2|ENSMUSG00000053024.15|contactin 2
mm39_v1_chr19_+_10872778_10872790	0.313564	CCUUGGC	ENSMUST00000179297.3|Prpf19|ENSMUSG00000024735.14|pre-mRNA processing factor 19
mm39_v1_chr9_-_96993169_96993214	0.30854	CCUUGGC	ENSMUST00000085206.11|Slc25a36|ENSMUSG00000032449.14|solute carrier family 25, member 36
mm39_v1_chr18_+_42186713_42186732	0.305169	CCUUGGC	ENSMUST00000072008.11|Sh3rf2|ENSMUSG00000057719.12|SH3 domain containing ring finger 2
mm39_v1_chr6_-_24956296_24956296	0.299427	CCUUGGC	ENSMUST00000127247.4|Tmem229a|ENSMUSG00000048022.12|transmembrane protein 229A
mm39_v1_chr11_+_105480796_105480857	0.298856	CCUUGGC	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr1_+_194302123_194302141	0.296916	CCUUGGC	ENSMUST00000027952.12|Plxna2|ENSMUSG00000026640.13|plexin A2
mm39_v1_chr7_-_125799644_125799673	0.2962	CCUUGGC	ENSMUST00000168189.8|Xpo6|ENSMUSG00000000131.16|exportin 6
mm39_v1_chrX_+_72716756_72716848	0.290726	CCUUGGC	ENSMUST00000033752.14|Slc6a8|ENSMUSG00000019558.15|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	ENSMUST00000114467.9|Slc6a8|ENSMUSG00000019558.15|solute carrier family 6 (neurotransmitter transporter, creatine), member 8
mm39_v1_chr1_+_60448703_60448811	0.279368	CCUUGGC	ENSMUST00000052332.15|Abi2|ENSMUSG00000026782.16|abl interactor 2
mm39_v1_chr19_+_59446804_59446883	0.275869	CCUUGGC	ENSMUST00000062216.4|Emx2|ENSMUSG00000043969.5|empty spiracles homeobox 2
mm39_v1_chr2_-_156921135_156921196	0.268204	CCUUGGC	ENSMUST00000069098.7|Soga1|ENSMUSG00000055485.7|suppressor of glucose, autophagy associated 1
mm39_v1_chr4_+_135933676_135933719	0.259553	CCUUGGC	ENSMUST00000047526.8|Asap3|ENSMUSG00000036995.8|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
mm39_v1_chr19_+_8595369_8595421	0.257998	CCUUGGC	ENSMUST00000010250.4|Slc22a6|ENSMUSG00000024650.6|solute carrier family 22 (organic anion transporter), member 6
mm39_v1_chr2_+_30735071_30735071	0.255337	CCUUGGC	ENSMUST00000041659.7|Prrx2|ENSMUSG00000039476.14|paired related homeobox 2
mm39_v1_chr6_+_86055048_86055071	0.251436	CCUUGGC	ENSMUST00000032069.8|Add2|ENSMUSG00000030000.11|adducin 2 (beta)
mm39_v1_chr2_-_152256947_152256947	0.244105	CCUUGGC	ENSMUST00000099207.5|Zcchc3|ENSMUSG00000074682.5|zinc finger, CCHC domain containing 3
mm39_v1_chr16_+_16714333_16714462	0.241582	CCUUGGC	ENSMUST00000027373.12|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)	ENSMUST00000232247.2|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)
mm39_v1_chr5_-_151113619_151113734	0.234241	CCUUGGC	ENSMUST00000062015.15|Stard13|ENSMUSG00000016128.15|StAR-related lipid transfer (START) domain containing 13	ENSMUST00000110483.9|Stard13|ENSMUSG00000016128.15|StAR-related lipid transfer (START) domain containing 13
mm39_v1_chr10_-_127031578_127031610	0.232709	CCUUGGC	ENSMUST00000038217.14|Dtx3|ENSMUSG00000040415.16|deltex 3, E3 ubiquitin ligase	ENSMUST00000130855.8|Dtx3|ENSMUSG00000040415.16|deltex 3, E3 ubiquitin ligase	ENSMUST00000116229.2|Dtx3|ENSMUSG00000040415.16|deltex 3, E3 ubiquitin ligase	ENSMUST00000144322.8|Dtx3|ENSMUSG00000040415.16|deltex 3, E3 ubiquitin ligase
mm39_v1_chr7_-_78228116_78228157	0.227258	CCUUGGC	ENSMUST00000206268.2|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3	ENSMUST00000039431.14|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3
mm39_v1_chr14_-_31139617_31139634	0.22385	CCUUGGC	ENSMUST00000100730.10|Sh3bp5|ENSMUSG00000021892.15|SH3-domain binding protein 5 (BTK-associated)
mm39_v1_chr7_-_84059321_84059384	0.214604	CCUUGGC	ENSMUST00000085077.5|Arnt2|ENSMUSG00000015709.10|aryl hydrocarbon receptor nuclear translocator 2	ENSMUST00000207769.2|Arnt2|ENSMUSG00000015709.10|aryl hydrocarbon receptor nuclear translocator 2
mm39_v1_chr14_+_118374511_118374590	0.212584	CCUUGGC	ENSMUST00000022728.4|Gpr180|ENSMUSG00000022131.4|G protein-coupled receptor 180
mm39_v1_chr15_+_102885467_102885467	0.211957	CCUUGGC	ENSMUST00000001706.7|Hoxc9|ENSMUSG00000036139.7|homeobox C9
mm39_v1_chr7_+_18659787_18659826	0.211281	CCUUGGC	ENSMUST00000032571.10|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2	ENSMUST00000220302.2|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2
mm39_v1_chr1_-_170695328_170695354	0.209042	CCUUGGC	ENSMUST00000027974.7|Atf6|ENSMUSG00000026663.7|activating transcription factor 6
mm39_v1_chr19_+_44551280_44551318	0.199483	CCUUGGC	ENSMUST00000040455.5|Hif1an|ENSMUSG00000036450.5|hypoxia-inducible factor 1, alpha subunit inhibitor
mm39_v1_chr12_+_85335365_85335486	0.199043	CCUUGGC	ENSMUST00000059341.5|Zc2hc1c|ENSMUSG00000045064.6|zinc finger, C2HC-type containing 1C
mm39_v1_chr7_-_70010341_70010494	0.19693	CCUUGGC	ENSMUST00000032768.15|Nr2f2|ENSMUSG00000030551.15|nuclear receptor subfamily 2, group F, member 2
mm39_v1_chr4_+_62478062_62478084	0.195687	CCUUGGC	ENSMUST00000065870.14|Rgs3|ENSMUSG00000059810.19|regulator of G-protein signaling 3
mm39_v1_chr9_-_57460004_57460054	0.194614	CCUUGGC	ENSMUST00000034856.15|Mpi|ENSMUSG00000032306.15|mannose phosphate isomerase
mm39_v1_chr9_-_20888054_20888077	0.185619	CCUUGGC	ENSMUST00000054197.7|S1pr2|ENSMUSG00000043895.7|sphingosine-1-phosphate receptor 2
mm39_v1_chr12_+_4819277_4819337	0.185289	CCUUGGC	ENSMUST00000020967.11|Pfn4|ENSMUSG00000020639.15|profilin family, member 4
mm39_v1_chr14_+_60615128_60615153	0.181719	CCUUGGC	ENSMUST00000022561.9|Amer2|ENSMUSG00000021986.10|APC membrane recruitment 2
mm39_v1_chr17_+_64203017_64203059	0.181076	CCUUGGC	ENSMUST00000000129.14|Fer|ENSMUSG00000000127.16|fer (fms/fps related) protein kinase
mm39_v1_chr6_+_142332941_142333017	0.174599	CCUUGGC	ENSMUST00000032372.7|Golt1b|ENSMUSG00000030245.11|golgi transport 1B
mm39_v1_chr10_+_74802996_74803035	0.167088	CCUUGGC	ENSMUST00000037813.5|Gnaz|ENSMUSG00000040009.7|guanine nucleotide binding protein, alpha z subunit
mm39_v1_chr17_+_34148485_34148560	0.165198	CCUUGGC	ENSMUST00000047503.16|Rgl2|ENSMUSG00000041354.17|ral guanine nucleotide dissociation stimulator-like 2
mm39_v1_chr1_-_143652711_143652806	0.16451	CCUUGGC	ENSMUST00000159879.2|Ro60|ENSMUSG00000018199.10|Ro60, Y RNA binding protein
mm39_v1_chr10_+_13376745_13376787	0.16352	CCUUGGC	ENSMUST00000060212.13|Fuca2|ENSMUSG00000019810.16|fucosidase, alpha-L- 2, plasma	ENSMUST00000121465.3|Fuca2|ENSMUSG00000019810.16|fucosidase, alpha-L- 2, plasma
mm39_v1_chr3_+_96503944_96503979	0.156328	CCUUGGC	ENSMUST00000058943.8|Ankrd34a|ENSMUSG00000049097.10|ankyrin repeat domain 34A
mm39_v1_chr8_+_129085719_129085787	0.152436	CCUUGGC	ENSMUST00000026917.10|Nrp1|ENSMUSG00000025810.10|neuropilin 1
mm39_v1_chrY_-_1286623_1286635	0.152029	CCUUGGC	ENSMUST00000091190.12|Ddx3y|ENSMUSG00000069045.12|DEAD box helicase 3, Y-linked
mm39_v1_chr10_+_79722081_79722153	0.149993	CCUUGGC	ENSMUST00000046091.7|Elane|ENSMUSG00000020125.8|elastase, neutrophil expressed
mm39_v1_chr2_+_127112127_127112191	0.148704	CCUUGGC	ENSMUST00000110375.9|Stard7|ENSMUSG00000027367.17|START domain containing 7
mm39_v1_chr6_-_113172340_113172349	0.148554	CCUUGGC	ENSMUST00000162280.2|Lhfpl4|ENSMUSG00000042873.12|lipoma HMGIC fusion partner-like protein 4
mm39_v1_chr8_-_117648147_117648194	0.142097	CCUUGGC	ENSMUST00000078589.7|Cmc2|ENSMUSG00000014633.16|COX assembly mitochondrial protein 2	ENSMUST00000148235.8|Cmc2|ENSMUSG00000014633.16|COX assembly mitochondrial protein 2
mm39_v1_chr12_+_26519203_26519203	0.134054	CCUUGGC	ENSMUST00000020969.5|Cmpk2|ENSMUSG00000020638.9|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial
mm39_v1_chr7_-_119694400_119694535	0.133791	CCUUGGC	ENSMUST00000209154.3|Dnah3|ENSMUSG00000052273.5|dynein, axonemal, heavy chain 3	ENSMUST00000046993.4|Dnah3|ENSMUSG00000052273.5|dynein, axonemal, heavy chain 3
mm39_v1_chr11_+_106167541_106167574	0.130088	CCUUGGC	ENSMUST00000044462.4|Tcam1|ENSMUSG00000020712.12|testicular cell adhesion molecule 1
mm39_v1_chr4_-_154721288_154721330	0.121411	CCUUGGC	ENSMUST00000030902.13|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105637.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000070313.14|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105636.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105638.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000097759.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000124771.2|Prdm16|ENSMUSG00000039410.17|PR domain containing 16
mm39_v1_chr1_+_74324089_74324231	0.120539	CCUUGGC	ENSMUST00000113805.8|Pnkd|ENSMUSG00000026179.15|paroxysmal nonkinesiogenic dyskinesia	ENSMUST00000027370.13|Pnkd|ENSMUSG00000026179.15|paroxysmal nonkinesiogenic dyskinesia	ENSMUST00000087226.11|Pnkd|ENSMUSG00000026179.15|paroxysmal nonkinesiogenic dyskinesia
mm39_v1_chr2_+_119156265_119156298	0.116435	CCUUGGC	ENSMUST00000102517.4|Dll4|ENSMUSG00000027314.7|delta like canonical Notch ligand 4
mm39_v1_chr2_+_155617251_155617313	0.113988	CCUUGGC	ENSMUST00000029141.6|Mmp24|ENSMUSG00000027612.8|matrix metallopeptidase 24
mm39_v1_chr11_+_76563281_76563296	0.113879	CCUUGGC	ENSMUST00000056184.2|Bhlha9|ENSMUSG00000044243.4|basic helix-loop-helix family, member a9
mm39_v1_chr5_-_97540230_97540244	0.11265	CCUUGGC	ENSMUST00000060265.6|Naa11|ENSMUSG00000046000.6|N(alpha)-acetyltransferase 11, NatA catalytic subunit
mm39_v1_chr11_+_69737437_69737476	0.112399	CCUUGGC	ENSMUST00000152566.8|Plscr3|ENSMUSG00000019461.13|phospholipid scramblase 3	ENSMUST00000108633.9|Plscr3|ENSMUSG00000019461.13|phospholipid scramblase 3
mm39_v1_chr11_+_68906737_68906961	0.109924	CCUUGGC	ENSMUST00000021278.14|Ctc1|ENSMUSG00000020898.19|CTS telomere maintenance complex component 1	ENSMUST00000161455.8|Ctc1|ENSMUSG00000020898.19|CTS telomere maintenance complex component 1	ENSMUST00000116359.3|Ctc1|ENSMUSG00000020898.19|CTS telomere maintenance complex component 1
mm39_v1_chr11_+_3280401_3280541	0.109875	CCUUGGC	ENSMUST00000045153.11|Pik3ip1|ENSMUSG00000034614.15|phosphoinositide-3-kinase interacting protein 1
mm39_v1_chrX_+_99537897_99537975	0.108237	CCUUGGC	ENSMUST00000033570.6|Igbp1|ENSMUSG00000031221.8|immunoglobulin (CD79A) binding protein 1
mm39_v1_chr5_+_31125999_31126011	0.104511	CCUUGGC	ENSMUST00000006818.4|Tcf23|ENSMUSG00000006642.4|transcription factor 23
mm39_v1_chr6_-_72416531_72416548	0.104245	CCUUGGC	ENSMUST00000205335.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000206692.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000059472.10|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha
mm39_v1_chr13_+_49495025_49495099	0.103406	CCUUGGC	ENSMUST00000048544.14|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110084.4|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110085.11|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2
mm39_v1_chr16_+_32698149_32698230	0.100391	CCUUGGC	ENSMUST00000023489.11|Fyttd1|ENSMUSG00000022800.15|forty-two-three domain containing 1	ENSMUST00000171325.9|Fyttd1|ENSMUSG00000022800.15|forty-two-three domain containing 1
mm39_v1_chr14_-_61677258_61677323	0.0957597	CCUUGGC	ENSMUST00000022496.9|Kpna3|ENSMUSG00000021929.10|karyopherin (importin) alpha 3
mm39_v1_chr10_-_128727542_128727587	0.0957167	CCUUGGC	ENSMUST00000026408.7|Gdf11|ENSMUSG00000025352.7|growth differentiation factor 11
mm39_v1_chr3_-_65300000_65300044	0.0907687	CCUUGGC	ENSMUST00000029414.12|Ssr3|ENSMUSG00000027828.13|signal sequence receptor, gamma
mm39_v1_chr15_-_97665679_97665853	0.0906756	CCUUGGC	ENSMUST00000129223.9|Rapgef3|ENSMUSG00000022469.18|Rap guanine nucleotide exchange factor (GEF) 3	ENSMUST00000126854.9|Rapgef3|ENSMUSG00000022469.18|Rap guanine nucleotide exchange factor (GEF) 3	ENSMUST00000135080.2|Rapgef3|ENSMUSG00000022469.18|Rap guanine nucleotide exchange factor (GEF) 3
mm39_v1_chrX_+_100342749_100342808	0.0898643	CCUUGGC	ENSMUST00000118111.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3	ENSMUST00000130555.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3	ENSMUST00000151528.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3
mm39_v1_chr18_-_58343423_58343559	0.0876241	CCUUGGC	ENSMUST00000025497.8|Fbn2|ENSMUSG00000024598.10|fibrillin 2
mm39_v1_chr17_-_63188139_63188352	0.0847267	CCUUGGC	ENSMUST00000078839.5|Efna5|ENSMUSG00000048915.13|ephrin A5	ENSMUST00000076840.12|Efna5|ENSMUSG00000048915.13|ephrin A5
mm39_v1_chr7_+_92390811_92390923	0.0841857	CCUUGGC	ENSMUST00000032879.15|Rab30|ENSMUSG00000030643.15|RAB30, member RAS oncogene family
mm39_v1_chr5_-_124387812_124387845	0.0838505	CCUUGGC	ENSMUST00000162812.8|Pitpnm2|ENSMUSG00000029406.16|phosphatidylinositol transfer protein, membrane-associated 2
mm39_v1_chr3_+_92874366_92874369	0.0835931	CCUUGGC	ENSMUST00000098886.5|Lce3e|ENSMUSG00000074433.5|late cornified envelope 3E
mm39_v1_chr9_+_91260688_91260700	0.081596	CCUUGGC	ENSMUST00000066384.7|Zic4|ENSMUSG00000036972.15|zinc finger protein of the cerebellum 4
mm39_v1_chr5_-_135107078_135107165	0.0783368	CCUUGGC	ENSMUST00000067935.11|Vps37d|ENSMUSG00000043614.14|vacuolar protein sorting 37D	ENSMUST00000076203.3|Vps37d|ENSMUSG00000043614.14|vacuolar protein sorting 37D
mm39_v1_chr16_-_74208180_74208314	0.0781648	CCUUGGC	ENSMUST00000117200.8|Robo2|ENSMUSG00000052516.20|roundabout guidance receptor 2
mm39_v1_chr8_+_96078886_96078957	0.0769139	CCUUGGC	ENSMUST00000034243.7|Mmp15|ENSMUSG00000031790.9|matrix metallopeptidase 15
mm39_v1_chr7_+_12661337_12661366	0.0735355	CCUUGGC	ENSMUST00000045870.5|Rnf225|ENSMUSG00000033967.5|ring finger protein 225
mm39_v1_chrX_+_20714782_20714828	0.0712807	CCUUGGC	ENSMUST00000001155.11|Araf|ENSMUSG00000001127.13|Araf proto-oncogene, serine/threonine kinase	ENSMUST00000122312.8|Araf|ENSMUSG00000001127.13|Araf proto-oncogene, serine/threonine kinase	ENSMUST00000120356.8|Araf|ENSMUSG00000001127.13|Araf proto-oncogene, serine/threonine kinase	ENSMUST00000122850.2|Araf|ENSMUSG00000001127.13|Araf proto-oncogene, serine/threonine kinase
mm39_v1_chr18_-_35064906_35065066	0.0709222	CCUUGGC	ENSMUST00000025218.8|Etf1|ENSMUSG00000024360.9|eukaryotic translation termination factor 1
mm39_v1_chr2_+_30254239_30254316	0.0708946	CCUUGGC	ENSMUST00000077977.14|Miga2|ENSMUSG00000026858.19|mitoguardin 2	ENSMUST00000140075.9|Miga2|ENSMUSG00000026858.19|mitoguardin 2	ENSMUST00000142801.8|Miga2|ENSMUSG00000026858.19|mitoguardin 2	ENSMUST00000100214.10|Miga2|ENSMUSG00000026858.19|mitoguardin 2
mm39_v1_chr10_-_121312212_121312252	0.068275	CCUUGGC	ENSMUST00000026902.9|Rassf3|ENSMUSG00000025795.9|Ras association (RalGDS/AF-6) domain family member 3
mm39_v1_chr8_-_123425805_123425859	0.0660092	CCUUGGC	ENSMUST00000127984.9|Cbfa2t3|ENSMUSG00000006362.17|CBFA2/RUNX1 translocation partner 3
mm39_v1_chr16_-_10609959_10609976	0.0646606	CCUUGGC	ENSMUST00000037996.7|Prm2|ENSMUSG00000038015.7|protamine 2
mm39_v1_chr11_+_121593219_121593237	0.0608777	CCUUGGC	ENSMUST00000036742.14|Metrnl|ENSMUSG00000039208.16|meteorin, glial cell differentiation regulator-like
mm39_v1_chr1_-_14826208_14826222	0.0597783	CCUUGGC	ENSMUST00000027062.7|Msc|ENSMUSG00000025930.7|musculin
mm39_v1_chr8_+_12445287_12445295	0.0593243	CCUUGGC	ENSMUST00000180353.2|Sox1|ENSMUSG00000096014.2|SRY (sex determining region Y)-box 1
mm39_v1_chr8_-_86159398_86159465	0.0590681	CCUUGGC	ENSMUST00000047749.7|4921524J17Rik|ENSMUSG00000036934.10|RIKEN cDNA 4921524J17 gene
mm39_v1_chr19_+_42158995_42159096	0.058996	CCUUGGC	ENSMUST00000169536.8|Zfyve27|ENSMUSG00000018820.14|zinc finger, FYVE domain containing 27	ENSMUST00000099443.11|Zfyve27|ENSMUSG00000018820.14|zinc finger, FYVE domain containing 27
mm39_v1_chr12_-_51738666_51738738	0.0581289	CCUUGGC	ENSMUST00000013130.15|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3	ENSMUST00000169503.4|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3
mm39_v1_chr19_-_50667079_50667134	0.0529689	CCUUGGC	ENSMUST00000209413.2|Sorcs1|ENSMUSG00000043531.17|sortilin-related VPS10 domain containing receptor 1	ENSMUST00000072685.13|Sorcs1|ENSMUSG00000043531.17|sortilin-related VPS10 domain containing receptor 1	ENSMUST00000164039.9|Sorcs1|ENSMUSG00000043531.17|sortilin-related VPS10 domain containing receptor 1
mm39_v1_chr13_+_8252895_8252907	0.0502832	CCUUGGC	ENSMUST00000064473.13|Adarb2|ENSMUSG00000052551.17|adenosine deaminase, RNA-specific, B2
mm39_v1_chr11_+_32405367_32405438	0.0479162	CCUUGGC	ENSMUST00000051053.5|Ubtd2|ENSMUSG00000044949.5|ubiquitin domain containing 2
mm39_v1_chr14_+_55120875_55120972	0.0464387	CCUUGGC	ENSMUST00000134077.2|Gm20521|ENSMUSG00000092232.2|predicted gene 20521	ENSMUST00000172844.8|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000133397.4|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000227108.2|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2
mm39_v1_chr8_+_79755194_79755242	0.0450654	CCUUGGC	ENSMUST00000119254.8|Zfp827|ENSMUSG00000071064.16|zinc finger protein 827	ENSMUST00000238669.2|Zfp827|ENSMUSG00000071064.16|zinc finger protein 827
mm39_v1_chr4_+_41135730_41135743	0.0440317	CCUUGGC	ENSMUST00000040008.4|Ube2r2|ENSMUSG00000036241.4|ubiquitin-conjugating enzyme E2R 2
mm39_v1_chr11_-_85741159_85741159	0.0390611	CCUUGGC	ENSMUST00000146433.2|Gm11444|ENSMUSG00000069785.5|predicted gene 11444
mm39_v1_chr5_+_130477642_130477671	0.0348906	CCUUGGC	ENSMUST00000111288.4|Caln1|ENSMUSG00000060371.13|calneuron 1
mm39_v1_chr10_-_14420725_14420780	0.0346334	CCUUGGC	ENSMUST00000041168.6|Adgrg6|ENSMUSG00000039116.8|adhesion G protein-coupled receptor G6	ENSMUST00000238680.2|Adgrg6|ENSMUSG00000039116.8|adhesion G protein-coupled receptor G6
mm39_v1_chr1_-_123973223_123973308	0.0346217	CCUUGGC	ENSMUST00000112606.8|Dpp10|ENSMUSG00000036815.18|dipeptidylpeptidase 10
mm39_v1_chr4_-_120682859_120682904	0.0343974	CCUUGGC	ENSMUST00000134979.8|Nfyc|ENSMUSG00000032897.18|nuclear transcription factor-Y gamma	ENSMUST00000136236.8|Nfyc|ENSMUSG00000032897.18|nuclear transcription factor-Y gamma	ENSMUST00000043429.12|Nfyc|ENSMUSG00000032897.18|nuclear transcription factor-Y gamma	ENSMUST00000145658.2|Nfyc|ENSMUSG00000032897.18|nuclear transcription factor-Y gamma
mm39_v1_chr11_-_5492175_5492221	0.0335468	CCUUGGC	ENSMUST00000020776.5|Ccdc117|ENSMUSG00000020482.5|coiled-coil domain containing 117
mm39_v1_chr6_+_120643323_120643386	0.0332548	CCUUGGC	ENSMUST00000112686.8|Cecr2|ENSMUSG00000071226.12|CECR2, histone acetyl-lysine reader
mm39_v1_chr19_-_5610628_5610674	0.0327635	CCUUGGC	ENSMUST00000025861.3|Ovol1|ENSMUSG00000024922.3|ovo like zinc finger 1
mm39_v1_chr2_+_121859025_121859137	0.029484	CCUUGGC	ENSMUST00000028668.8|Eif3j1|ENSMUSG00000027236.9|eukaryotic translation initiation factor 3, subunit J1
mm39_v1_chr6_-_71800788_71800799	0.0268472	CCUUGGC	ENSMUST00000065103.4|Mrpl35|ENSMUSG00000052962.4|mitochondrial ribosomal protein L35
mm39_v1_chr16_+_20470402_20470462	0.0263075	CCUUGGC	ENSMUST00000007212.9|Psmd2|ENSMUSG00000006998.17|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	ENSMUST00000232629.2|Psmd2|ENSMUSG00000006998.17|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2
mm39_v1_chr1_-_80318197_80318229	0.0256961	CCUUGGC	ENSMUST00000163119.8|Cul3|ENSMUSG00000004364.15|cullin 3
mm39_v1_chr10_+_126814542_126814618	0.0233573	CCUUGGC	ENSMUST00000105256.10|Ctdsp2|ENSMUSG00000078429.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm39_v1_chr5_-_122402451_122402525	0.0230404	CCUUGGC	ENSMUST00000111738.8|Tctn1|ENSMUSG00000038593.19|tectonic family member 1
mm39_v1_chr12_-_5425682_5425705	0.0227154	CCUUGGC	ENSMUST00000020958.9|Klhl29|ENSMUSG00000020627.11|kelch-like 29
mm39_v1_chr2_-_25209107_25209182	0.021589	CCUUGGC	ENSMUST00000114318.10|Grin1|ENSMUSG00000026959.14|glutamate receptor, ionotropic, NMDA1 (zeta 1)	ENSMUST00000114310.10|Grin1|ENSMUSG00000026959.14|glutamate receptor, ionotropic, NMDA1 (zeta 1)	ENSMUST00000114308.10|Grin1|ENSMUSG00000026959.14|glutamate receptor, ionotropic, NMDA1 (zeta 1)	ENSMUST00000114317.10|Grin1|ENSMUSG00000026959.14|glutamate receptor, ionotropic, NMDA1 (zeta 1)	ENSMUST00000028335.13|Grin1|ENSMUSG00000026959.14|glutamate receptor, ionotropic, NMDA1 (zeta 1)	ENSMUST00000114314.10|Grin1|ENSMUSG00000026959.14|glutamate receptor, ionotropic, NMDA1 (zeta 1)	ENSMUST00000114307.8|Grin1|ENSMUSG00000026959.14|glutamate receptor, ionotropic, NMDA1 (zeta 1)
mm39_v1_chr17_-_28039588_28039662	0.0203971	CCUUGGC	ENSMUST00000114863.10|Ilrun|ENSMUSG00000056692.14|inflammation and lipid regulator with UBA-like and NBR1-like domains	ENSMUST00000233131.2|Ilrun|ENSMUSG00000056692.14|inflammation and lipid regulator with UBA-like and NBR1-like domains
mm39_v1_chr11_+_32592707_32592875	0.0173034	CCUUGGC	ENSMUST00000109366.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000093205.13|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000076383.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11
mm39_v1_chr1_+_176642226_176642226	0.0167085	CCUUGGC	ENSMUST00000056773.15|Sdccag8|ENSMUSG00000026504.18|serologically defined colon cancer antigen 8	ENSMUST00000027785.15|Sdccag8|ENSMUSG00000026504.18|serologically defined colon cancer antigen 8
mm39_v1_chr10_+_59715378_59715434	0.0162351	CCUUGGC	ENSMUST00000147914.8|Dnajb12|ENSMUSG00000020109.14|DnaJ heat shock protein family (Hsp40) member B12	ENSMUST00000146590.8|Dnajb12|ENSMUSG00000020109.14|DnaJ heat shock protein family (Hsp40) member B12
mm39_v1_chr2_+_28403255_28403338	0.0153182	CCUUGGC	ENSMUST00000028170.15|Ralgds|ENSMUSG00000026821.17|ral guanine nucleotide dissociation stimulator
mm39_v1_chr18_+_68066328_68066378	0.0136166	CCUUGGC	ENSMUST00000063775.5|Ldlrad4|ENSMUSG00000024544.10|low density lipoprotein receptor class A domain containing 4
mm39_v1_chr12_+_111132779_111132832	0.0124323	CCUUGGC	ENSMUST00000117269.8|Traf3|ENSMUSG00000021277.17|TNF receptor-associated factor 3
mm39_v1_chr10_+_85222677_85222704	0.00909365	CCUUGGC	ENSMUST00000105307.8|Btbd11|ENSMUSG00000020042.16|BTB (POZ) domain containing 11	ENSMUST00000020231.10|Btbd11|ENSMUSG00000020042.16|BTB (POZ) domain containing 11
mm39_v1_chr5_-_36853281_36853386	0.0076942	CCUUGGC	ENSMUST00000031091.13|D5Ertd579e|ENSMUSG00000029190.20|DNA segment, Chr 5, ERATO Doi 579, expressed	ENSMUST00000140653.2|D5Ertd579e|ENSMUSG00000029190.20|DNA segment, Chr 5, ERATO Doi 579, expressed
mm39_v1_chr9_+_40180726_40180737	0.00549184	CCUUGGC	ENSMUST00000171835.9|Scn3b|ENSMUSG00000049281.17|sodium channel, voltage-gated, type III, beta
