mm39_v1_chr2_+_117942357_117942380	0.511164	CUACAGU	ENSMUST00000039559.9|Thbs1|ENSMUSG00000040152.9|thrombospondin 1
mm39_v1_chr6_-_142453531_142453688	0.42846	CUACAGU	ENSMUST00000134191.3|Ldhb|ENSMUSG00000030246.13|lactate dehydrogenase B	ENSMUST00000239397.2|Ldhb|ENSMUSG00000030246.13|lactate dehydrogenase B	ENSMUST00000239395.2|Ldhb|ENSMUSG00000030246.13|lactate dehydrogenase B	ENSMUST00000032373.12|Ldhb|ENSMUSG00000030246.13|lactate dehydrogenase B
mm39_v1_chr6_+_55428963_55429042	0.403819	CUACAGU	ENSMUST00000070736.12|Adcyap1r1|ENSMUSG00000029778.13|adenylate cyclase activating polypeptide 1 receptor 1	ENSMUST00000070756.12|Adcyap1r1|ENSMUSG00000029778.13|adenylate cyclase activating polypeptide 1 receptor 1	ENSMUST00000166962.8|Adcyap1r1|ENSMUSG00000029778.13|adenylate cyclase activating polypeptide 1 receptor 1
mm39_v1_chr12_-_41536430_41536430	0.397211	CUACAGU	ENSMUST00000043884.6|Lrrn3|ENSMUSG00000036295.6|leucine rich repeat protein 3, neuronal
mm39_v1_chr8_-_58106057_58106074	0.359654	CUACAGU	ENSMUST00000034021.12|Galnt7|ENSMUSG00000031608.14|polypeptide N-acetylgalactosaminyltransferase 7
mm39_v1_chr6_+_141194886_141194995	0.340289	CUACAGU	ENSMUST00000043259.10|Pde3a|ENSMUSG00000041741.11|phosphodiesterase 3A, cGMP inhibited
mm39_v1_chrX_-_92875712_92875807	0.308246	CUACAGU	ENSMUST00000045748.7|Pdk3|ENSMUSG00000035232.9|pyruvate dehydrogenase kinase, isoenzyme 3
mm39_v1_chr12_-_111638722_111638772	0.294452	CUACAGU	ENSMUST00000001304.9|Ckb|ENSMUSG00000001270.10|creatine kinase, brain
mm39_v1_chr2_+_49509288_49509355	0.23043	CUACAGU	ENSMUST00000028102.14|Kif5c|ENSMUSG00000026764.16|kinesin family member 5C
mm39_v1_chrX_-_103244784_103244810	0.219073	CUACAGU	ENSMUST00000118314.8|Nexmif|ENSMUSG00000046449.16|neurite extension and migration factor
mm39_v1_chr8_-_116434517_116434533	0.213929	CUACAGU	ENSMUST00000109104.2|Maf|ENSMUSG00000055435.7|avian musculoaponeurotic fibrosarcoma oncogene homolog
mm39_v1_chr19_-_17814984_17815006	0.20509	CUACAGU	ENSMUST00000025618.16|Pcsk5|ENSMUSG00000024713.17|proprotein convertase subtilisin/kexin type 5	ENSMUST00000050715.10|Pcsk5|ENSMUSG00000024713.17|proprotein convertase subtilisin/kexin type 5
mm39_v1_chr2_-_65955338_65955486	0.189367	CUACAGU	ENSMUST00000028378.4|Galnt3|ENSMUSG00000026994.10|polypeptide N-acetylgalactosaminyltransferase 3
mm39_v1_chr2_+_65676111_65676142	0.168299	CUACAGU	ENSMUST00000122912.8|Csrnp3|ENSMUSG00000044647.17|cysteine-serine-rich nuclear protein 3
mm39_v1_chr14_-_121616616_121616746	0.16544	CUACAGU	ENSMUST00000079817.8|Stk24|ENSMUSG00000063410.9|serine/threonine kinase 24
mm39_v1_chr11_+_44508137_44508169	0.160746	CUACAGU	ENSMUST00000109268.2|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000101326.10|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000081265.12|Ebf1|ENSMUSG00000057098.15|early B cell factor 1
mm39_v1_chr10_-_117681864_117681940	0.160005	CUACAGU	ENSMUST00000064667.9|Rap1b|ENSMUSG00000052681.9|RAS related protein 1b
mm39_v1_chr14_-_103220066_103220081	0.143987	CUACAGU	ENSMUST00000184744.2|Kctd12|ENSMUSG00000098557.2|potassium channel tetramerisation domain containing 12
mm39_v1_chr12_-_21467437_21467638	0.120924	CUACAGU	ENSMUST00000103002.8|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	ENSMUST00000155480.9|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	ENSMUST00000135088.9|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta
mm39_v1_chr13_+_111822712_111822745	0.117276	CUACAGU	ENSMUST00000109272.9|Mier3|ENSMUSG00000032727.15|MIER family member 3
mm39_v1_chr11_-_6394385_6394443	0.0987927	CUACAGU	ENSMUST00000109737.9|H2az2|ENSMUSG00000041126.17|H2A.Z histone variant 2
mm39_v1_chr16_+_58228806_58228886	0.0984596	CUACAGU	ENSMUST00000046663.8|Dcbld2|ENSMUSG00000035107.14|discoidin, CUB and LCCL domain containing 2
mm39_v1_chrX_+_92330102_92330128	0.0965682	CUACAGU	ENSMUST00000046565.13|Arx|ENSMUSG00000035277.16|aristaless related homeobox	ENSMUST00000113947.6|Arx|ENSMUSG00000035277.16|aristaless related homeobox
mm39_v1_chrX_-_71699740_71699795	0.0954861	CUACAGU	ENSMUST00000055966.13|Gabra3|ENSMUSG00000031343.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
mm39_v1_chr12_+_69418886_69418946	0.0926181	CUACAGU	ENSMUST00000050063.9|Arf6|ENSMUSG00000044147.9|ADP-ribosylation factor 6
mm39_v1_chr4_-_41314877_41314889	0.0862706	CUACAGU	ENSMUST00000030145.9|Dcaf12|ENSMUSG00000028436.9|DDB1 and CUL4 associated factor 12
mm39_v1_chr11_-_84416340_84416369	0.0850109	CUACAGU	ENSMUST00000018842.14|Lhx1|ENSMUSG00000018698.16|LIM homeobox protein 1
mm39_v1_chr2_-_45003270_45003296	0.0779609	CUACAGU	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr8_-_111985824_111985858	0.0772046	CUACAGU	ENSMUST00000169020.8|Glg1|ENSMUSG00000003316.15|golgi apparatus protein 1	ENSMUST00000003404.9|Glg1|ENSMUSG00000003316.15|golgi apparatus protein 1
mm39_v1_chr17_+_74796473_74796570	0.0762725	CUACAGU	ENSMUST00000024873.7|Yipf4|ENSMUSG00000024072.10|Yip1 domain family, member 4
mm39_v1_chr16_+_41353360_41353429	0.0717862	CUACAGU	ENSMUST00000099761.10|Lsamp|ENSMUSG00000061080.12|limbic system-associated membrane protein
mm39_v1_chr6_-_38853097_38853167	0.0710314	CUACAGU	ENSMUST00000161779.8|Hipk2|ENSMUSG00000061436.16|homeodomain interacting protein kinase 2
mm39_v1_chr6_+_14901343_14901363	0.0685817	CUACAGU	ENSMUST00000115477.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr10_+_53473032_53473100	0.0685792	CUACAGU	ENSMUST00000020004.8|Asf1a|ENSMUSG00000019857.8|anti-silencing function 1A histone chaperone
mm39_v1_chr11_-_50216426_50216500	0.0611255	CUACAGU	ENSMUST00000179865.8|Canx|ENSMUSG00000020368.16|calnexin	ENSMUST00000020637.9|Canx|ENSMUSG00000020368.16|calnexin
mm39_v1_chr4_-_154721288_154721330	0.0602945	CUACAGU	ENSMUST00000030902.13|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105637.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000070313.14|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105636.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105638.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000097759.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000124771.2|Prdm16|ENSMUSG00000039410.17|PR domain containing 16
mm39_v1_chr9_+_120762466_120762638	0.0573916	CUACAGU	ENSMUST00000007130.15|Ctnnb1|ENSMUSG00000006932.18|catenin (cadherin associated protein), beta 1	ENSMUST00000178812.9|Ctnnb1|ENSMUSG00000006932.18|catenin (cadherin associated protein), beta 1
mm39_v1_chr10_+_95350975_95351043	0.0571766	CUACAGU	ENSMUST00000099329.5|Ube2n|ENSMUSG00000074781.6|ubiquitin-conjugating enzyme E2N
mm39_v1_chr4_+_155575792_155575877	0.0560022	CUACAGU	ENSMUST00000165335.8|Gnb1|ENSMUSG00000029064.16|guanine nucleotide binding protein (G protein), beta 1	ENSMUST00000105616.10|Gnb1|ENSMUSG00000029064.16|guanine nucleotide binding protein (G protein), beta 1	ENSMUST00000030940.14|Gnb1|ENSMUSG00000029064.16|guanine nucleotide binding protein (G protein), beta 1
mm39_v1_chr2_-_167503416_167503502	0.0537651	CUACAGU	ENSMUST00000125544.3|Gm20431|ENSMUSG00000089739.3|predicted gene 20431	ENSMUST00000006587.7|Tmem189|ENSMUSG00000090213.2|transmembrane protein 189
mm39_v1_chr9_-_31123083_31123120	0.0526095	CUACAGU	ENSMUST00000217641.2|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000072634.15|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000079758.9|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000213254.2|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2
mm39_v1_chr13_-_103470937_103471007	0.0513959	CUACAGU	ENSMUST00000167058.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4	ENSMUST00000164111.2|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr3_+_60408600_60408663	0.0499026	CUACAGU	ENSMUST00000099087.8|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr9_+_21527462_21527473	0.0458127	CUACAGU	ENSMUST00000034707.15|Smarca4|ENSMUSG00000032187.17|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	ENSMUST00000098948.10|Smarca4|ENSMUSG00000032187.17|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm39_v1_chr3_+_157653051_157653148	0.0441671	CUACAGU	ENSMUST00000164582.4|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c	ENSMUST00000040787.13|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c
mm39_v1_chr11_-_65160767_65160780	0.0437207	CUACAGU	ENSMUST00000102635.10|Myocd|ENSMUSG00000020542.19|myocardin
mm39_v1_chr6_-_38230890_38231089	0.0428548	CUACAGU	ENSMUST00000117556.8|D630045J12Rik|ENSMUSG00000063455.17|RIKEN cDNA D630045J12 gene	ENSMUST00000169256.5|D630045J12Rik|ENSMUSG00000063455.17|RIKEN cDNA D630045J12 gene
mm39_v1_chr3_+_52175757_52175827	0.0424005	CUACAGU	ENSMUST00000053764.7|Foxo1|ENSMUSG00000044167.7|forkhead box O1
mm39_v1_chr6_+_120643323_120643386	0.0406927	CUACAGU	ENSMUST00000112686.8|Cecr2|ENSMUSG00000071226.12|CECR2, histone acetyl-lysine reader
mm39_v1_chr17_+_78507669_78507687	0.0364514	CUACAGU	ENSMUST00000112498.3|Crim1|ENSMUSG00000024074.9|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm39_v1_chr6_+_136495784_136495808	0.0362272	CUACAGU	ENSMUST00000032335.13|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein	ENSMUST00000185724.7|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr13_-_47083194_47083276	0.0348626	CUACAGU	ENSMUST00000056978.8|Kif13a|ENSMUSG00000021375.12|kinesin family member 13A
mm39_v1_chr1_-_181039509_181039580	0.0348214	CUACAGU	ENSMUST00000162819.9|Wdr26|ENSMUSG00000038733.15|WD repeat domain 26	ENSMUST00000237749.2|Wdr26|ENSMUSG00000038733.15|WD repeat domain 26
mm39_v1_chr2_+_160487801_160487816	0.0334393	CUACAGU	ENSMUST00000109468.3|Top1|ENSMUSG00000070544.7|topoisomerase (DNA) I
mm39_v1_chr4_+_97665843_97665870	0.0301673	CUACAGU	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr11_+_60590584_60590671	0.0253507	CUACAGU	ENSMUST00000108719.4|Llgl1|ENSMUSG00000020536.13|LLGL1 scribble cell polarity complex component
mm39_v1_chrX_-_36253309_36253357	0.0245514	CUACAGU	ENSMUST00000060474.14|Septin6|ENSMUSG00000050379.16|septin 6	ENSMUST00000053456.11|Septin6|ENSMUSG00000050379.16|septin 6	ENSMUST00000115239.10|Septin6|ENSMUSG00000050379.16|septin 6
mm39_v1_chr4_+_131600918_131600992	0.0194144	CUACAGU	ENSMUST00000053819.6|Srsf4|ENSMUSG00000028911.17|serine and arginine-rich splicing factor 4
mm39_v1_chr5_+_115769960_115769992	0.0189308	CUACAGU	ENSMUST00000031492.15|Rab35|ENSMUSG00000029518.16|RAB35, member RAS oncogene family
mm39_v1_chr5_-_135963408_135963467	0.0180329	CUACAGU	ENSMUST00000198270.2|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	ENSMUST00000055808.6|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm39_v1_chr4_+_34550918_34550945	0.01766	CUACAGU	ENSMUST00000084299.6|Akirin2|ENSMUSG00000028291.8|akirin 2
mm39_v1_chr11_+_77985486_77985504	0.0120296	CUACAGU	ENSMUST00000073705.12|Fam222b|ENSMUSG00000037750.17|family with sequence similarity 222, member B
mm39_v1_chr8_+_107237483_107237557	0.011688	CUACAGU	ENSMUST00000080797.8|Cdh3|ENSMUSG00000061048.9|cadherin 3
mm39_v1_chr12_-_91556761_91556783	0.0102263	CUACAGU	ENSMUST00000021345.14|Gtf2a1|ENSMUSG00000020962.15|general transcription factor II A, 1
mm39_v1_chr2_-_167473892_167474015	0.00998582	CUACAGU	ENSMUST00000060645.13|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1	ENSMUST00000140216.2|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1	ENSMUST00000151365.8|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1	ENSMUST00000109207.10|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1
mm39_v1_chr13_+_81031512_81031543	0.00743912	CUACAGU	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr3_+_58322119_58322161	0.00538989	CUACAGU	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr9_-_117081518_117081557	0.00423128	CUACAGU	ENSMUST00000111773.10|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein	ENSMUST00000068962.14|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein	ENSMUST00000044901.14|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein
mm39_v1_chr19_-_60779077_60779105	0.00367326	CUACAGU	ENSMUST00000025955.8|Eif3a|ENSMUSG00000024991.9|eukaryotic translation initiation factor 3, subunit A
mm39_v1_chr2_+_131333800_131333864	0.0032823	CUACAGU	ENSMUST00000110179.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110189.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110182.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110183.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110186.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110188.8|Smox|ENSMUSG00000027333.19|spermine oxidase
mm39_v1_chr11_+_21189277_21189308	0.00252191	CUACAGU	ENSMUST00000109578.8|Vps54|ENSMUSG00000020128.16|VPS54 GARP complex subunit	ENSMUST00000006221.14|Vps54|ENSMUSG00000020128.16|VPS54 GARP complex subunit
mm39_v1_chr13_-_64300964_64301043	0.000505897	CUACAGU	ENSMUST00000059817.12|Zfp367|ENSMUSG00000044934.14|zinc finger protein 367	ENSMUST00000117241.2|Zfp367|ENSMUSG00000044934.14|zinc finger protein 367
mm39_v1_chr2_+_60040231_60040288	3.32152e-05	CUACAGU	ENSMUST00000102748.11|Marchf7|ENSMUSG00000026977.18|membrane associated ring-CH-type finger 7
