mm39_v1_chr7_+_130633776_130633806	17.8824	Cdx2	ENSMUST00000084509.7|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1	ENSMUST00000213064.3|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1	ENSMUST00000208311.4|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1
mm39_v1_chr17_-_31348576_31348620	15.8567	Cdx2	ENSMUST00000024827.5|Tff3|ENSMUSG00000024029.5|trefoil factor 3, intestinal
mm39_v1_chr6_+_71176811_71176872	13.755	Cdx2	ENSMUST00000067492.8|Fabp1|ENSMUSG00000054422.8|fatty acid binding protein 1, liver
mm39_v1_chr11_-_99328969_99328985	10.9094	Cdx2	ENSMUST00000017743.3|Krt20|ENSMUSG00000035775.3|keratin 20
mm39_v1_chr16_-_48232770_48232785	10.4	Cdx2	ENSMUST00000212197.2|Gm5485|ENSMUSG00000110573.2|predicted gene 5485
mm39_v1_chr3_+_57332735_57332873	9.27255	Cdx2	ENSMUST00000029377.8|Tm4sf4|ENSMUSG00000027801.8|transmembrane 4 superfamily member 4
mm39_v1_chr3_-_14843512_14843526	8.35528	Cdx2	ENSMUST00000094365.11|Car1|ENSMUSG00000027556.16|carbonic anhydrase 1
mm39_v1_chr3_+_3699205_3699221	8.25615	Cdx2	ENSMUST00000108394.3|Hnf4g|ENSMUSG00000017688.15|hepatocyte nuclear factor 4, gamma
mm39_v1_chr9_-_65330231_65330243	8.11621	Cdx2	ENSMUST00000065894.7|Slc51b|ENSMUSG00000053862.7|solute carrier family 51, beta subunit
mm39_v1_chr1_-_45542442_45542442	7.03779	Cdx2	ENSMUST00000086430.5|Col5a2|ENSMUSG00000026042.17|collagen, type V, alpha 2
mm39_v1_chr3_-_10273628_10273646	6.62237	Cdx2	ENSMUST00000029041.6|Fabp4|ENSMUSG00000062515.4|fatty acid binding protein 4, adipocyte
mm39_v1_chr11_+_96085118_96085142	6.46875	Cdx2	ENSMUST00000062709.4|Hoxb13|ENSMUSG00000049604.4|homeobox B13
mm39_v1_chrX_+_21581135_21581290	5.7177	Cdx2	ENSMUST00000033414.8|Slc6a14|ENSMUSG00000031089.8|solute carrier family 6 (neurotransmitter transporter), member 14
mm39_v1_chrX_+_95498965_95499017	5.61045	Cdx2	ENSMUST00000033553.14|Heph|ENSMUSG00000031209.15|hephaestin
mm39_v1_chr10_+_97400990_97400990	5.55702	Cdx2	ENSMUST00000038160.6|Lum|ENSMUSG00000036446.6|lumican
mm39_v1_chr11_+_67128843_67128871	5.38211	Cdx2	ENSMUST00000018632.11|Myh4|ENSMUSG00000057003.13|myosin, heavy polypeptide 4, skeletal muscle
mm39_v1_chr11_+_94102255_94102280	5.08002	Cdx2	ENSMUST00000041589.6|Tob1|ENSMUSG00000037573.6|transducer of ErbB-2.1
mm39_v1_chr6_+_17491231_17491242	4.88449	Cdx2	ENSMUST00000080469.12|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr11_+_96214078_96214152	4.6301	Cdx2	ENSMUST00000093944.10|Hoxb3|ENSMUSG00000048763.12|homeobox B3
mm39_v1_chr6_-_52190299_52190323	4.59399	Cdx2	ENSMUST00000128102.4|Gm28308|ENSMUSG00000101298.2|predicted gene 28308
mm39_v1_chr2_+_74552322_74552418	4.14858	Cdx2	ENSMUST00000047904.4|Hoxd4|ENSMUSG00000101174.9|homeobox D4
mm39_v1_chrX_+_138585728_138585833	4.00504	Cdx2	ENSMUST00000096313.4|Tbc1d8b|ENSMUSG00000042473.9|TBC1 domain family, member 8B
mm39_v1_chr7_+_140343652_140343758	3.90835	Cdx2	ENSMUST00000026552.9|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1	ENSMUST00000209253.2|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1	ENSMUST00000210235.2|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1
mm39_v1_chr8_-_34333573_34333699	3.64958	Cdx2	ENSMUST00000183062.2|Rbpms|ENSMUSG00000031586.18|RNA binding protein gene with multiple splicing
mm39_v1_chr8_-_5155347_5155358	3.64484	Cdx2	ENSMUST00000023835.3|Slc10a2|ENSMUSG00000023073.3|solute carrier family 10, member 2
mm39_v1_chrX_+_162923474_162923614	3.56391	Cdx2	ENSMUST00000073973.11|Ace2|ENSMUSG00000015405.16|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
mm39_v1_chr10_+_52267702_52267706	3.53132	Cdx2	ENSMUST00000067085.7|Nepn|ENSMUSG00000038624.14|nephrocan
mm39_v1_chr4_-_63965161_63965252	3.27199	Cdx2	ENSMUST00000107377.10|Tnc|ENSMUSG00000028364.16|tenascin C
mm39_v1_chr3_-_92393193_92393208	3.12957	Cdx2	ENSMUST00000054599.8|Sprr1a|ENSMUSG00000050359.8|small proline-rich protein 1A
mm39_v1_chr8_+_15107646_15107660	2.94882	Cdx2	ENSMUST00000033842.4|Myom2|ENSMUSG00000031461.5|myomesin 2
mm39_v1_chr8_+_55003359_55003375	2.30595	Cdx2	ENSMUST00000033918.4|Asb5|ENSMUSG00000031519.5|ankyrin repeat and SOCs box-containing 5
mm39_v1_chr5_-_135773047_135773138	2.29513	Cdx2	ENSMUST00000153399.2|Tmem120a|ENSMUSG00000039886.9|transmembrane protein 120A
mm39_v1_chr14_+_54923655_54923695	2.18705	Cdx2	ENSMUST00000038539.8|1700123O20Rik|ENSMUSG00000040822.8|RIKEN cDNA 1700123O20 gene	ENSMUST00000228027.2|1700123O20Rik|ENSMUSG00000040822.8|RIKEN cDNA 1700123O20 gene
mm39_v1_chr1_-_144124871_144124980	2.15371	Cdx2	ENSMUST00000189061.7|Rgs1|ENSMUSG00000026358.14|regulator of G-protein signaling 1
mm39_v1_chr17_-_71305003_71305049	2.14636	Cdx2	ENSMUST00000024846.13|Myl12a|ENSMUSG00000024048.16|myosin, light chain 12A, regulatory, non-sarcomeric	ENSMUST00000232766.2|Myl12a|ENSMUSG00000024048.16|myosin, light chain 12A, regulatory, non-sarcomeric
mm39_v1_chr15_+_3300249_3300488	2.131	Cdx2	ENSMUST00000082424.12|Selenop|ENSMUSG00000064373.14|selenoprotein P	ENSMUST00000159158.9|Selenop|ENSMUSG00000064373.14|selenoprotein P	ENSMUST00000159216.10|Selenop|ENSMUSG00000064373.14|selenoprotein P	ENSMUST00000160311.3|Selenop|ENSMUSG00000064373.14|selenoprotein P
mm39_v1_chr14_+_80237691_80237749	2.08343	Cdx2	ENSMUST00000228749.2|Olfm4|ENSMUSG00000022026.8|olfactomedin 4	ENSMUST00000088735.4|Olfm4|ENSMUSG00000022026.8|olfactomedin 4
mm39_v1_chr4_-_9643636_9643717	2.02209	Cdx2	ENSMUST00000108333.8|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase	ENSMUST00000108334.8|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase	ENSMUST00000108335.8|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase	ENSMUST00000152526.8|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase	ENSMUST00000103004.10|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase
mm39_v1_chr3_+_81904229_81904229	1.92181	Cdx2	ENSMUST00000029641.10|Asic5|ENSMUSG00000028008.11|acid-sensing (proton-gated) ion channel family member 5
mm39_v1_chrX_-_50294867_50294911	1.71191	Cdx2	ENSMUST00000114876.9|Mbnl3|ENSMUSG00000036109.18|muscleblind like splicing factor 3
mm39_v1_chr1_+_139429430_139429466	1.65587	Cdx2	ENSMUST00000027615.7|F13b|ENSMUSG00000026368.7|coagulation factor XIII, beta subunit
mm39_v1_chrM_+_8603_8615	1.64409	Cdx2	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm39_v1_chr16_-_43836681_43836799	1.59542	Cdx2	ENSMUST00000036174.10|Gramd1c|ENSMUSG00000036292.15|GRAM domain containing 1C
mm39_v1_chr15_-_101441254_101441259	1.52656	Cdx2	ENSMUST00000023720.8|Krt84|ENSMUSG00000044294.9|keratin 84
mm39_v1_chr4_-_109059414_109059469	1.50752	Cdx2	ENSMUST00000160774.8|Osbpl9|ENSMUSG00000028559.18|oxysterol binding protein-like 9	ENSMUST00000194478.6|Osbpl9|ENSMUSG00000028559.18|oxysterol binding protein-like 9	ENSMUST00000030288.14|Osbpl9|ENSMUSG00000028559.18|oxysterol binding protein-like 9	ENSMUST00000162787.9|Osbpl9|ENSMUSG00000028559.18|oxysterol binding protein-like 9
mm39_v1_chr17_-_71153283_71153321	1.50014	Cdx2	ENSMUST00000156484.2|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr11_-_99501015_99501079	1.48047	Cdx2	ENSMUST00000076478.2|Gm11937|ENSMUSG00000058725.2|predicted gene 11937
mm39_v1_chr2_-_51039112_51039127	1.45959	Cdx2	ENSMUST00000154545.2|Rnd3|ENSMUSG00000017144.9|Rho family GTPase 3	ENSMUST00000017288.9|Rnd3|ENSMUSG00000017144.9|Rho family GTPase 3
mm39_v1_chr11_-_99996452_99996471	1.43797	Cdx2	ENSMUST00000107416.3|Krt36|ENSMUSG00000020916.9|keratin 36
mm39_v1_chr8_+_95113066_95113135	1.36282	Cdx2	ENSMUST00000161576.8|Herpud1|ENSMUSG00000031770.17|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	ENSMUST00000034220.8|Herpud1|ENSMUSG00000031770.17|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
mm39_v1_chr1_-_144124787_144124806	1.36168	Cdx2	ENSMUST00000185714.2|Rgs1|ENSMUSG00000026358.14|regulator of G-protein signaling 1
mm39_v1_chr12_-_102844537_102844709	1.08312	Cdx2	ENSMUST00000045652.8|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7	ENSMUST00000223554.2|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7
mm39_v1_chr14_-_50425655_50425655	0.975084	Cdx2	ENSMUST00000205837.3|Olfr730|ENSMUSG00000109835.3|olfactory receptor 730
mm39_v1_chr2_-_69542805_69542950	0.972819	Cdx2	ENSMUST00000102706.4|Fastkd1|ENSMUSG00000027086.17|FAST kinase domains 1	ENSMUST00000073152.13|Fastkd1|ENSMUSG00000027086.17|FAST kinase domains 1
mm39_v1_chr15_-_101482320_101482349	0.963162	Cdx2	ENSMUST00000042957.6|Krt75|ENSMUSG00000022986.6|keratin 75
mm39_v1_chr3_+_93052089_93052106	0.941978	Cdx2	ENSMUST00000107300.7|Crnn|ENSMUSG00000078657.7|cornulin	ENSMUST00000195515.2|Crnn|ENSMUSG00000078657.7|cornulin
mm39_v1_chr13_-_24118139_24118212	0.901116	Cdx2	ENSMUST00000052776.4|H2bc1|ENSMUSG00000050799.4|H2B clustered histone 1
mm39_v1_chr10_-_33920289_33920295	0.871779	Cdx2	ENSMUST00000218239.2|Calhm4|ENSMUSG00000039508.7|calcium homeostasis modulator family member 4
mm39_v1_chr9_+_95519654_95519685	0.859681	Cdx2	ENSMUST00000015498.9|Pcolce2|ENSMUSG00000015354.9|procollagen C-endopeptidase enhancer 2
mm39_v1_chr2_+_153742294_153742315	0.858288	Cdx2	ENSMUST00000088955.12|Bpifb6|ENSMUSG00000068009.12|BPI fold containing family B, member 6	ENSMUST00000135501.3|Bpifb6|ENSMUSG00000068009.12|BPI fold containing family B, member 6
mm39_v1_chrX_+_162873183_162873197	0.827654	Cdx2	ENSMUST00000015545.10|Cltrn|ENSMUSG00000015401.13|collectrin, amino acid transport regulator
mm39_v1_chr8_-_106660470_106660494	0.812775	Cdx2	ENSMUST00000034368.8|Ctrl|ENSMUSG00000031896.8|chymotrypsin-like
mm39_v1_chr2_+_142920386_142920401	0.743702	Cdx2	ENSMUST00000028902.3|Otor|ENSMUSG00000027416.3|otoraplin
mm39_v1_chr18_-_79152504_79152606	0.743637	Cdx2	ENSMUST00000025430.11|Setbp1|ENSMUSG00000024548.12|SET binding protein 1
mm39_v1_chr1_-_37996838_37996841	0.674056	Cdx2	ENSMUST00000027254.10|Lyg1|ENSMUSG00000026085.12|lysozyme G-like 1	ENSMUST00000114894.2|Lyg1|ENSMUSG00000026085.12|lysozyme G-like 1
mm39_v1_chr16_-_88609108_88609124	0.586981	Cdx2	ENSMUST00000232664.2|Gm20741|ENSMUSG00000116636.2|predicted gene, 20741
mm39_v1_chr11_-_99869879_99869927	0.585508	Cdx2	ENSMUST00000105051.2|Krtap29-1|ENSMUSG00000078254.2|keratin associated protein 29-1
mm39_v1_chr3_+_126391046_126391076	0.502277	Cdx2	ENSMUST00000106401.8|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta
mm39_v1_chr10_-_33920300_33920315	0.478134	Cdx2	ENSMUST00000048052.7|Calhm4|ENSMUSG00000039508.7|calcium homeostasis modulator family member 4
mm39_v1_chr14_-_4506874_4506894	0.45115	Cdx2	ENSMUST00000224934.2|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta
mm39_v1_chr3_+_126390951_126390964	0.449187	Cdx2	ENSMUST00000171289.8|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta
mm39_v1_chr11_-_99932373_99932387	0.429676	Cdx2	ENSMUST00000056362.3|Krt34|ENSMUSG00000043485.3|keratin 34
mm39_v1_chr1_-_186437760_186437897	0.394784	Cdx2	ENSMUST00000195201.2|Tgfb2|ENSMUSG00000039239.15|transforming growth factor, beta 2
mm39_v1_chr15_-_50746202_50746218	0.383495	Cdx2	ENSMUST00000184885.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chrM_+_7758_7775	0.372067	Cdx2	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.1|mitochondrially encoded ATP synthase 8
mm39_v1_chr19_-_34856853_34856864	0.369308	Cdx2	ENSMUST00000036584.13|Pank1|ENSMUSG00000033610.17|pantothenate kinase 1
mm39_v1_chr14_-_63221950_63221965	0.369251	Cdx2	ENSMUST00000100493.3|Defb48|ENSMUSG00000075574.3|defensin beta 48
mm39_v1_chr19_+_8828132_8828149	0.32987	Cdx2	ENSMUST00000235683.2|Lrrn4cl|ENSMUSG00000071656.8|LRRN4 C-terminal like	ENSMUST00000096257.3|Lrrn4cl|ENSMUSG00000071656.8|LRRN4 C-terminal like
mm39_v1_chrM_+_7779_7927	0.307381	Cdx2	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm39_v1_chr19_-_47680528_47680535	0.303502	Cdx2	ENSMUST00000026045.14|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1	ENSMUST00000086923.6|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1
mm39_v1_chr14_-_54923517_54923625	0.290104	Cdx2	ENSMUST00000125265.2|Acin1|ENSMUSG00000022185.20|apoptotic chromatin condensation inducer 1
mm39_v1_chr13_+_23765546_23765581	0.285454	Cdx2	ENSMUST00000102968.3|H4c4|ENSMUSG00000061482.8|H4 clustered histone 4
mm39_v1_chr17_-_65143066_65143066	0.27363	Cdx2	ENSMUST00000024896.4|4930583I09Rik|ENSMUSG00000024088.5|RIKEN cDNA 4930583I09 gene
mm39_v1_chr11_-_99884818_99884821	0.268316	Cdx2	ENSMUST00000105049.2|Krtap17-1|ENSMUSG00000078252.2|keratin associated protein 17-1
mm39_v1_chr14_+_64229914_64229955	0.265175	Cdx2	ENSMUST00000058229.6|Rp1l1|ENSMUSG00000046049.8|retinitis pigmentosa 1 homolog like 1
mm39_v1_chr2_-_25982160_25982189	0.264163	Cdx2	ENSMUST00000114159.9|Nacc2|ENSMUSG00000026932.15|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm39_v1_chr13_-_22219738_22219774	0.25109	Cdx2	ENSMUST00000091742.6|H2ac12|ENSMUSG00000069302.6|H2A clustered histone 12
mm39_v1_chr10_+_118040729_118040847	0.248181	Cdx2	ENSMUST00000096691.5|Il22|ENSMUSG00000074695.4|interleukin 22
mm39_v1_chr14_+_54453748_54453748	0.186023	Cdx2	ENSMUST00000103736.2|Traj4|ENSMUSG00000076924.2|T cell receptor alpha joining 4
mm39_v1_chr6_+_42263644_42263790	0.151647	Cdx2	ENSMUST00000163936.8|Clcn1|ENSMUSG00000029862.17|chloride channel, voltage-sensitive 1
