mm39_v1_chr5_+_135135735_135135772	9.16519	En2	ENSMUST00000201977.4|Mlxipl|ENSMUSG00000005373.14|MLX interacting protein-like	ENSMUST00000005507.10|Mlxipl|ENSMUSG00000005373.14|MLX interacting protein-like
mm39_v1_chrM_+_10167_10167	6.83477	En2	ENSMUST00000082414.1|mt-Nd4|ENSMUSG00000064363.1|mitochondrially encoded NADH dehydrogenase 4
mm39_v1_chr7_+_51528788_51528813	6.54053	En2	ENSMUST00000107591.9|Gas2|ENSMUSG00000030498.16|growth arrest specific 2
mm39_v1_chr1_+_127657142_127657155	6.43875	En2	ENSMUST00000038006.8|Acmsd|ENSMUSG00000026348.8|amino carboxymuconate semialdehyde decarboxylase
mm39_v1_chr17_-_84154173_84154186	5.2781	En2	ENSMUST00000000687.9|Haao|ENSMUSG00000000673.10|3-hydroxyanthranilate 3,4-dioxygenase
mm39_v1_chr17_-_84154196_84154241	4.88689	En2	ENSMUST00000234214.2|Haao|ENSMUSG00000000673.10|3-hydroxyanthranilate 3,4-dioxygenase
mm39_v1_chrM_+_9870_9885	4.78846	En2	ENSMUST00000084013.1|mt-Nd4l|ENSMUSG00000065947.1|mitochondrially encoded NADH dehydrogenase 4L
mm39_v1_chrM_+_3906_3942	4.65516	En2	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm39_v1_chr12_-_84497718_84497792	4.6151	En2	ENSMUST00000085192.7|Aldh6a1|ENSMUSG00000021238.12|aldehyde dehydrogenase family 6, subfamily A1	ENSMUST00000220491.2|Aldh6a1|ENSMUSG00000021238.12|aldehyde dehydrogenase family 6, subfamily A1
mm39_v1_chr4_-_63072367_63072410	4.59555	En2	ENSMUST00000030041.5|Ambp|ENSMUSG00000028356.5|alpha 1 microglobulin/bikunin precursor
mm39_v1_chr7_-_4909515_4909515	4.50086	En2	ENSMUST00000210663.2|Gm36210|ENSMUSG00000110221.2|predicted gene, 36210
mm39_v1_chr14_+_32043944_32043999	4.48886	En2	ENSMUST00000022480.8|Ogdhl|ENSMUSG00000021913.9|oxoglutarate dehydrogenase-like	ENSMUST00000228529.2|Ogdhl|ENSMUSG00000021913.9|oxoglutarate dehydrogenase-like
mm39_v1_chr3_+_59989282_59989297	4.35456	En2	ENSMUST00000029326.6|Sucnr1|ENSMUSG00000027762.7|succinate receptor 1
mm39_v1_chr14_+_55797468_55797503	3.65274	En2	ENSMUST00000147981.2|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11	ENSMUST00000133256.8|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11
mm39_v1_chr15_+_100251030_100251081	3.64585	En2	ENSMUST00000075675.7|Methig1|ENSMUSG00000093789.4|methyltransferase hypoxia inducible domain containing 1	ENSMUST00000088142.6|Mettl7a2|ENSMUSG00000056487.9|methyltransferase like 7A2	ENSMUST00000176287.2|Mettl7a2|ENSMUSG00000056487.9|methyltransferase like 7A2
mm39_v1_chr10_-_107321938_107321995	3.58915	En2	ENSMUST00000000445.2|Myf5|ENSMUSG00000000435.2|myogenic factor 5
mm39_v1_chrM_+_11735_11751	3.40423	En2	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm39_v1_chr15_+_21111428_21111538	3.32567	En2	ENSMUST00000075132.8|Cdh12|ENSMUSG00000040452.10|cadherin 12
mm39_v1_chr11_+_114741948_114741999	3.27553	En2	ENSMUST00000133245.2|Gprc5c|ENSMUSG00000051043.17|G protein-coupled receptor, family C, group 5, member C	ENSMUST00000122967.3|Gprc5c|ENSMUSG00000051043.17|G protein-coupled receptor, family C, group 5, member C
mm39_v1_chr3_-_129518723_129518751	3.09385	En2	ENSMUST00000199615.5|Egf|ENSMUSG00000028017.8|epidermal growth factor	ENSMUST00000197079.5|Egf|ENSMUSG00000028017.8|epidermal growth factor
mm39_v1_chr15_+_39522905_39522982	3.03986	En2	ENSMUST00000226410.2|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2
mm39_v1_chr17_+_7437500_7437532	2.99547	En2	ENSMUST00000024575.8|Rps6ka2|ENSMUSG00000023809.11|ribosomal protein S6 kinase, polypeptide 2
mm39_v1_chr8_+_84728123_84728206	2.99235	En2	ENSMUST00000060357.15|1700067K01Rik|ENSMUSG00000046408.16|RIKEN cDNA 1700067K01 gene	ENSMUST00000239176.2|1700067K01Rik|ENSMUSG00000046408.16|RIKEN cDNA 1700067K01 gene
mm39_v1_chr9_+_32027335_32027432	2.94253	En2	ENSMUST00000174641.8|Arhgap32|ENSMUSG00000041444.15|Rho GTPase activating protein 32
mm39_v1_chr11_+_114742331_114742380	2.70525	En2	ENSMUST00000177952.8|Gprc5c|ENSMUSG00000051043.17|G protein-coupled receptor, family C, group 5, member C
mm39_v1_chr2_+_118692435_118692481	2.67579	En2	ENSMUST00000028807.6|Ivd|ENSMUSG00000027332.12|isovaleryl coenzyme A dehydrogenase
mm39_v1_chr14_+_33662976_33663011	2.6666	En2	ENSMUST00000100720.2|Gdf2|ENSMUSG00000072625.2|growth differentiation factor 2
mm39_v1_chr15_+_100262423_100262454	2.63648	En2	ENSMUST00000175683.8|Higd1c|ENSMUSG00000093550.8|HIG1 domain family, member 1C	ENSMUST00000177211.2|Higd1c|ENSMUSG00000093550.8|HIG1 domain family, member 1C
mm39_v1_chr7_+_126550009_126550138	2.62778	En2	ENSMUST00000106332.3|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chr7_+_126549692_126549756	2.608	En2	ENSMUST00000106335.8|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2	ENSMUST00000146017.3|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chr7_+_44240310_44240344	2.53944	En2	ENSMUST00000107906.6|Kcnc3|ENSMUSG00000062785.15|potassium voltage gated channel, Shaw-related subfamily, member 3
mm39_v1_chr9_+_103940575_103940614	2.50798	En2	ENSMUST00000120854.8|Acad11|ENSMUSG00000090150.11|acyl-Coenzyme A dehydrogenase family, member 11
mm39_v1_chr13_+_23728222_23728222	2.49946	En2	ENSMUST00000075558.5|H3c7|ENSMUSG00000100210.3|H3 clustered histone 7
mm39_v1_chrM_+_7758_7775	2.4982	En2	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.1|mitochondrially encoded ATP synthase 8
mm39_v1_chr19_-_7943365_7943401	2.42157	En2	ENSMUST00000182102.8|Slc22a27|ENSMUSG00000067656.14|solute carrier family 22, member 27	ENSMUST00000075619.5|Slc22a27|ENSMUSG00000067656.14|solute carrier family 22, member 27
mm39_v1_chr14_+_55797934_55797990	2.40635	En2	ENSMUST00000121622.8|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11	ENSMUST00000143431.2|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11	ENSMUST00000150481.8|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11
mm39_v1_chrM_+_7779_7927	2.37219	En2	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm39_v1_chr15_+_100232810_100232810	2.36082	En2	ENSMUST00000075420.6|Mettl7a3|ENSMUSG00000058057.6|methyltransferase like 7A3
mm39_v1_chr3_+_75464837_75464869	2.35478	En2	ENSMUST00000161776.8|Serpini1|ENSMUSG00000027834.16|serine (or cysteine) peptidase inhibitor, clade I, member 1	ENSMUST00000029423.9|Serpini1|ENSMUSG00000027834.16|serine (or cysteine) peptidase inhibitor, clade I, member 1
mm39_v1_chr14_+_67953584_67953677	2.35389	En2	ENSMUST00000145542.8|Kctd9|ENSMUSG00000034327.18|potassium channel tetramerisation domain containing 9	ENSMUST00000125212.2|Kctd9|ENSMUSG00000034327.18|potassium channel tetramerisation domain containing 9
mm39_v1_chr8_+_94879235_94879379	2.29746	En2	ENSMUST00000034211.10|Mt3|ENSMUSG00000031760.10|metallothionein 3	ENSMUST00000211930.2|Mt3|ENSMUSG00000031760.10|metallothionein 3	ENSMUST00000211915.2|Mt3|ENSMUSG00000031760.10|metallothionein 3
mm39_v1_chr5_+_88731386_88731449	2.24629	En2	ENSMUST00000031229.11|Rufy3|ENSMUSG00000029291.12|RUN and FYVE domain containing 3
mm39_v1_chr14_+_58308004_58308004	2.22557	En2	ENSMUST00000165526.9|Fgf9|ENSMUSG00000021974.16|fibroblast growth factor 9
mm39_v1_chr13_-_113800172_113800212	2.21553	En2	ENSMUST00000054650.5|Hspb3|ENSMUSG00000051456.5|heat shock protein 3
mm39_v1_chrM_+_9459_9459	2.21088	En2	ENSMUST00000082411.1|mt-Nd3|ENSMUSG00000064360.1|mitochondrially encoded NADH dehydrogenase 3
mm39_v1_chr5_+_88731366_88731382	2.18322	En2	ENSMUST00000199312.5|Rufy3|ENSMUSG00000029291.12|RUN and FYVE domain containing 3
mm39_v1_chr12_+_52746158_52746186	2.14986	En2	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr14_+_67953547_67953571	2.14175	En2	ENSMUST00000078053.13|Kctd9|ENSMUSG00000034327.18|potassium channel tetramerisation domain containing 9
mm39_v1_chr19_-_56378309_56378443	2.13815	En2	ENSMUST00000166203.2|Nrap|ENSMUSG00000049134.16|nebulin-related anchoring protein	ENSMUST00000167239.8|Nrap|ENSMUSG00000049134.16|nebulin-related anchoring protein
mm39_v1_chr12_-_85197985_85198049	2.13749	En2	ENSMUST00000019379.9|Rps6kl1|ENSMUSG00000019235.10|ribosomal protein S6 kinase-like 1	ENSMUST00000221972.2|Rps6kl1|ENSMUSG00000019235.10|ribosomal protein S6 kinase-like 1
mm39_v1_chr18_+_84869456_84869473	2.08515	En2	ENSMUST00000160180.9|Cyb5a|ENSMUSG00000024646.15|cytochrome b5 type A (microsomal)
mm39_v1_chr12_-_108145469_108145484	2.00273	En2	ENSMUST00000125916.3|Setd3|ENSMUSG00000056770.16|SET domain containing 3	ENSMUST00000109879.8|Setd3|ENSMUSG00000056770.16|SET domain containing 3
mm39_v1_chr3_+_63203516_63203615	1.98951	En2	ENSMUST00000029400.7|Mme|ENSMUSG00000027820.13|membrane metallo endopeptidase
mm39_v1_chr16_-_45544960_45544982	1.96258	En2	ENSMUST00000096057.5|Tagln3|ENSMUSG00000022658.11|transgelin 3
mm39_v1_chr14_+_67953687_67953733	1.94995	En2	ENSMUST00000150768.8|Kctd9|ENSMUSG00000034327.18|potassium channel tetramerisation domain containing 9
mm39_v1_chr12_-_108145498_108145594	1.92752	En2	ENSMUST00000071095.14|Setd3|ENSMUSG00000056770.16|SET domain containing 3
mm39_v1_chr12_+_84498196_84498292	1.92583	En2	ENSMUST00000137170.3|Lin52|ENSMUSG00000085793.3|lin-52 homolog (C. elegans)
mm39_v1_chr2_+_9887427_9887455	1.90468	En2	ENSMUST00000114919.2|4930412O13Rik|ENSMUSG00000025783.3|RIKEN cDNA 4930412O13 gene
mm39_v1_chr6_-_54969843_54969926	1.89956	En2	ENSMUST00000203208.2|Ggct|ENSMUSG00000002797.10|gamma-glutamyl cyclotransferase
mm39_v1_chr6_-_54969928_54969942	1.89357	En2	ENSMUST00000131475.2|Ggct|ENSMUSG00000002797.10|gamma-glutamyl cyclotransferase
mm39_v1_chr10_+_50770836_50770857	1.86978	En2	ENSMUST00000219436.2|Sim1|ENSMUSG00000019913.5|single-minded family bHLH transcription factor 1
mm39_v1_chr14_+_55798362_55798432	1.86201	En2	ENSMUST00000072530.11|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11	ENSMUST00000128490.9|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11
mm39_v1_chr3_+_94320548_94320708	1.8554	En2	ENSMUST00000166032.8|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000200486.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000196386.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000045245.10|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000197901.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000198041.2|Gm42463|ENSMUSG00000106032.2|predicted gene 42463
mm39_v1_chr7_+_141503411_141503540	1.81993	En2	ENSMUST00000078200.12|Brsk2|ENSMUSG00000053046.17|BR serine/threonine kinase 2	ENSMUST00000018971.15|Brsk2|ENSMUSG00000053046.17|BR serine/threonine kinase 2
mm39_v1_chr14_+_19801333_19801360	1.80783	En2	ENSMUST00000022340.5|Nid2|ENSMUSG00000021806.5|nidogen 2
mm39_v1_chr11_-_99213769_99213783	1.79324	En2	ENSMUST00000038004.3|Krt25|ENSMUSG00000035831.3|keratin 25
mm39_v1_chr12_+_108145802_108145842	1.7891	En2	ENSMUST00000221167.2|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr5_-_84565218_84565248	1.67631	En2	ENSMUST00000113401.4|Epha5|ENSMUSG00000029245.17|Eph receptor A5
mm39_v1_chr10_+_88721854_88721872	1.6609	En2	ENSMUST00000020255.8|Slc5a8|ENSMUSG00000020062.8|solute carrier family 5 (iodide transporter), member 8
mm39_v1_chr17_+_3447465_3447482	1.66	En2	ENSMUST00000072156.7|Tiam2|ENSMUSG00000023800.16|T cell lymphoma invasion and metastasis 2
mm39_v1_chr9_+_107440445_107440479	1.63575	En2	ENSMUST00000010198.5|Tusc2|ENSMUSG00000010054.5|tumor suppressor 2, mitochondrial calcium regulator
mm39_v1_chr19_+_25649767_25649789	1.63298	En2	ENSMUST00000053068.7|Dmrt2|ENSMUSG00000048138.11|doublesex and mab-3 related transcription factor 2
mm39_v1_chr5_-_131645437_131645450	1.62108	En2	ENSMUST00000161804.9|Auts2|ENSMUSG00000029673.20|autism susceptibility candidate 2
mm39_v1_chr6_+_92793440_92793465	1.59785	En2	ENSMUST00000057977.4|A730049H05Rik|ENSMUSG00000048636.8|RIKEN cDNA A730049H05 gene
mm39_v1_chr14_+_55797443_55797465	1.56295	En2	ENSMUST00000117236.8|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11
mm39_v1_chr12_+_111780604_111780678	1.55608	En2	ENSMUST00000021714.9|Zfyve21|ENSMUSG00000021286.9|zinc finger, FYVE domain containing 21	ENSMUST00000223211.2|Zfyve21|ENSMUSG00000021286.9|zinc finger, FYVE domain containing 21	ENSMUST00000222843.2|Zfyve21|ENSMUSG00000021286.9|zinc finger, FYVE domain containing 21	ENSMUST00000221375.2|Zfyve21|ENSMUSG00000021286.9|zinc finger, FYVE domain containing 21
mm39_v1_chr12_+_38830812_38830847	1.5208	En2	ENSMUST00000160856.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr12_+_38830283_38830348	1.51475	En2	ENSMUST00000162563.8|Etv1|ENSMUSG00000004151.18|ets variant 1	ENSMUST00000161164.8|Etv1|ENSMUSG00000004151.18|ets variant 1	ENSMUST00000160996.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr4_+_150322151_150322162	1.50452	En2	ENSMUST00000141931.2|Eno1|ENSMUSG00000063524.14|enolase 1, alpha non-neuron
mm39_v1_chr11_+_67689094_67689113	1.45927	En2	ENSMUST00000168612.8|Dhrs7c|ENSMUSG00000033044.13|dehydrogenase/reductase (SDR family) member 7C
mm39_v1_chr2_+_30254239_30254316	1.45581	En2	ENSMUST00000077977.14|Miga2|ENSMUSG00000026858.19|mitoguardin 2	ENSMUST00000140075.9|Miga2|ENSMUSG00000026858.19|mitoguardin 2	ENSMUST00000142801.8|Miga2|ENSMUSG00000026858.19|mitoguardin 2	ENSMUST00000100214.10|Miga2|ENSMUSG00000026858.19|mitoguardin 2
mm39_v1_chr9_+_107440484_107440569	1.43611	En2	ENSMUST00000193418.2|Tusc2|ENSMUSG00000010054.5|tumor suppressor 2, mitochondrial calcium regulator
mm39_v1_chrM_+_7006_7021	1.43259	En2	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm39_v1_chr14_+_60615128_60615153	1.42088	En2	ENSMUST00000022561.9|Amer2|ENSMUSG00000021986.10|APC membrane recruitment 2
mm39_v1_chr8_+_121842902_121842916	1.39328	En2	ENSMUST00000054691.8|Foxc2|ENSMUSG00000046714.8|forkhead box C2
mm39_v1_chr11_-_107228382_107228463	1.37815	En2	ENSMUST00000040380.13|Pitpnc1|ENSMUSG00000040430.19|phosphatidylinositol transfer protein, cytoplasmic 1
mm39_v1_chr19_-_28945194_28945253	1.35124	En2	ENSMUST00000162110.8|Spata6l|ENSMUSG00000064202.16|spermatogenesis associated 6 like
mm39_v1_chr11_+_75422925_75422938	1.30868	En2	ENSMUST00000169547.9|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2
mm39_v1_chr8_+_94763826_94763919	1.3067	En2	ENSMUST00000109556.9|Ogfod1|ENSMUSG00000033009.16|2-oxoglutarate and iron-dependent oxygenase domain containing 1	ENSMUST00000093301.9|Ogfod1|ENSMUSG00000033009.16|2-oxoglutarate and iron-dependent oxygenase domain containing 1	ENSMUST00000060632.8|Ogfod1|ENSMUSG00000033009.16|2-oxoglutarate and iron-dependent oxygenase domain containing 1
mm39_v1_chr2_+_122016747_122016769	1.28061	En2	ENSMUST00000028661.6|Terb2|ENSMUSG00000027229.6|telomere repeat binding bouquet formation protein 2
mm39_v1_chr5_-_143846600_143846665	1.26977	En2	ENSMUST00000031613.11|Aimp2|ENSMUSG00000029610.14|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	ENSMUST00000100483.3|Aimp2|ENSMUSG00000029610.14|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2
mm39_v1_chr12_+_108145997_108146089	1.26598	En2	ENSMUST00000101055.5|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr10_-_8632519_8632533	1.25076	En2	ENSMUST00000212869.2|Sash1|ENSMUSG00000015305.7|SAM and SH3 domain containing 1
mm39_v1_chr11_-_109502243_109502258	1.22401	En2	ENSMUST00000103060.10|Wipi1|ENSMUSG00000041895.16|WD repeat domain, phosphoinositide interacting 1	ENSMUST00000047186.10|Wipi1|ENSMUSG00000041895.16|WD repeat domain, phosphoinositide interacting 1	ENSMUST00000106689.2|Wipi1|ENSMUSG00000041895.16|WD repeat domain, phosphoinositide interacting 1
mm39_v1_chr3_-_54962899_54962911	1.20796	En2	ENSMUST00000199144.5|Ccna1|ENSMUSG00000027793.7|cyclin A1
mm39_v1_chr11_+_75422953_75422979	1.20436	En2	ENSMUST00000127226.3|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2
mm39_v1_chr5_-_146158235_146158365	1.20226	En2	ENSMUST00000161859.8|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6
mm39_v1_chr16_+_37909363_37909426	1.16502	En2	ENSMUST00000023507.13|Gsk3b|ENSMUSG00000022812.15|glycogen synthase kinase 3 beta
mm39_v1_chr12_+_76450941_76451038	1.16409	En2	ENSMUST00000080449.7|Hspa2|ENSMUSG00000059970.8|heat shock protein 2
mm39_v1_chr14_-_70666513_70666545	1.14268	En2	ENSMUST00000226426.2|Piwil2|ENSMUSG00000033644.6|piwi-like RNA-mediated gene silencing 2	ENSMUST00000048129.6|Piwil2|ENSMUSG00000033644.6|piwi-like RNA-mediated gene silencing 2
mm39_v1_chr12_+_76451177_76451201	1.12169	En2	ENSMUST00000219555.2|Hspa2|ENSMUSG00000059970.8|heat shock protein 2
mm39_v1_chrM_+_8603_8615	1.11332	En2	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm39_v1_chr7_+_25380263_25380286	1.10892	En2	ENSMUST00000205325.2|B9d2|ENSMUSG00000063439.8|B9 protein domain 2	ENSMUST00000206913.2|B9d2|ENSMUSG00000063439.8|B9 protein domain 2
mm39_v1_chr6_+_8948608_8948619	1.10117	En2	ENSMUST00000160300.2|Nxph1|ENSMUSG00000046178.4|neurexophilin 1
mm39_v1_chr11_+_75422516_75422569	1.10011	En2	ENSMUST00000149727.8|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2	ENSMUST00000108433.8|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2	ENSMUST00000042561.14|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2	ENSMUST00000143035.8|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2
mm39_v1_chr5_-_146158201_146158230	1.09955	En2	ENSMUST00000161574.8|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6
mm39_v1_chr2_-_84545504_84545562	1.09789	En2	ENSMUST00000035840.6|Zdhhc5|ENSMUSG00000034075.11|zinc finger, DHHC domain containing 5
mm39_v1_chr3_+_75982890_75982890	1.09218	En2	ENSMUST00000160261.8|Fstl5|ENSMUSG00000034098.15|follistatin-like 5
mm39_v1_chr2_+_22959452_22959467	1.09197	En2	ENSMUST00000155602.4|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5
mm39_v1_chr8_-_84321069_84321113	1.08713	En2	ENSMUST00000019382.17|Tecr|ENSMUSG00000031708.18|trans-2,3-enoyl-CoA reductase	ENSMUST00000212630.2|Tecr|ENSMUSG00000031708.18|trans-2,3-enoyl-CoA reductase	ENSMUST00000165740.9|Tecr|ENSMUSG00000031708.18|trans-2,3-enoyl-CoA reductase
mm39_v1_chr12_-_56660054_56660113	1.08125	En2	ENSMUST00000072631.6|Nkx2-9|ENSMUSG00000058669.8|NK2 homeobox 9
mm39_v1_chr7_-_12096691_12096691	1.06953	En2	ENSMUST00000086228.3|Vmn1r84|ENSMUSG00000066803.3|vomeronasal 1 receptor 84
mm39_v1_chr4_+_150938376_150938525	1.06495	En2	ENSMUST00000073600.9|Errfi1|ENSMUSG00000028967.11|ERBB receptor feedback inhibitor 1
mm39_v1_chr18_-_43610829_43610868	1.06486	En2	ENSMUST00000057110.11|Eif3j2|ENSMUSG00000043424.11|eukaryotic translation initiation factor 3, subunit J2
mm39_v1_chr1_+_104696235_104696254	1.03687	En2	ENSMUST00000062528.9|Cdh20|ENSMUSG00000050840.9|cadherin 20
mm39_v1_chr8_-_45835234_45835328	1.03257	En2	ENSMUST00000093526.13|Fam149a|ENSMUSG00000070044.16|family with sequence similarity 149, member A
mm39_v1_chr9_+_56858162_56858217	1.0126	En2	ENSMUST00000068856.5|Snupn|ENSMUSG00000055334.5|snurportin 1
mm39_v1_chr10_+_73657689_73657715	0.995093	En2	ENSMUST00000064562.14|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000193174.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000105426.10|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000129404.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000131321.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000126920.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000147189.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000105424.10|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000092420.13|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000105429.10|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000193361.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000131724.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000152655.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000151116.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000155701.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000152819.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000125517.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000124046.8|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000146682.8|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000177107.8|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000149977.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000191854.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15
mm39_v1_chr6_+_37847721_37847892	0.989179	En2	ENSMUST00000031859.14|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24	ENSMUST00000120428.8|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24
mm39_v1_chr10_+_128173603_128173628	0.977743	En2	ENSMUST00000005826.9|Cs|ENSMUSG00000005683.9|citrate synthase
mm39_v1_chr2_+_27055245_27055245	0.975055	En2	ENSMUST00000000910.7|Dbh|ENSMUSG00000000889.9|dopamine beta hydroxylase
mm39_v1_chr8_+_21382681_21382685	0.948329	En2	ENSMUST00000098908.4|Defb33|ENSMUSG00000074454.4|defensin beta 33
mm39_v1_chr5_-_143279378_143279378	0.93646	En2	ENSMUST00000212715.2|Zfp853|ENSMUSG00000093910.3|zinc finger protein 853
mm39_v1_chr6_-_131662707_131662707	0.927588	En2	ENSMUST00000072404.3|Tas2r104|ENSMUSG00000061977.3|taste receptor, type 2, member 104
mm39_v1_chr2_+_49956441_49956481	0.927055	En2	ENSMUST00000112712.10|Lypd6|ENSMUSG00000050447.16|LY6/PLAUR domain containing 6	ENSMUST00000128451.8|Lypd6|ENSMUSG00000050447.16|LY6/PLAUR domain containing 6	ENSMUST00000053208.14|Lypd6|ENSMUSG00000050447.16|LY6/PLAUR domain containing 6
mm39_v1_chr9_+_78355474_78355510	0.925187	En2	ENSMUST00000034896.13|Mto1|ENSMUSG00000032342.14|mitochondrial tRNA translation optimization 1
mm39_v1_chr10_-_40018243_40018256	0.918831	En2	ENSMUST00000092566.8|Slc16a10|ENSMUSG00000019838.12|solute carrier family 16 (monocarboxylic acid transporters), member 10	ENSMUST00000213488.2|Slc16a10|ENSMUSG00000019838.12|solute carrier family 16 (monocarboxylic acid transporters), member 10
mm39_v1_chr2_-_122016670_122016670	0.895406	En2	ENSMUST00000028665.5|Patl2|ENSMUSG00000027233.5|protein associated with topoisomerase II homolog 2 (yeast)
mm39_v1_chr11_+_68986043_68986115	0.875655	En2	ENSMUST00000101004.9|Per1|ENSMUSG00000020893.18|period circadian clock 1
mm39_v1_chr17_+_69746321_69746321	0.87394	En2	ENSMUST00000169935.2|Akain1|ENSMUSG00000091636.3|A kinase (PRKA) anchor inhibitor 1
mm39_v1_chr18_+_23548192_23548270	0.864871	En2	ENSMUST00000222515.2|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha
mm39_v1_chr12_+_72488625_72488640	0.863039	En2	ENSMUST00000161284.3|Lrrc9|ENSMUSG00000021090.17|leucine rich repeat containing 9	ENSMUST00000162159.8|Lrrc9|ENSMUSG00000021090.17|leucine rich repeat containing 9
mm39_v1_chr11_-_99494134_99494134	0.854522	En2	ENSMUST00000072306.4|Gm11938|ENSMUSG00000057674.4|predicted gene 11938
mm39_v1_chr2_-_17465410_17465446	0.853159	En2	ENSMUST00000145492.2|Nebl|ENSMUSG00000053702.17|nebulette
mm39_v1_chr11_+_102175985_102176089	0.842924	En2	ENSMUST00000156326.2|Tmub2|ENSMUSG00000034757.16|transmembrane and ubiquitin-like domain containing 2
mm39_v1_chr11_-_69127848_69127865	0.839264	En2	ENSMUST00000021259.9|Gucy2e|ENSMUSG00000020890.12|guanylate cyclase 2e	ENSMUST00000108665.8|Gucy2e|ENSMUSG00000020890.12|guanylate cyclase 2e	ENSMUST00000108664.2|Gucy2e|ENSMUSG00000020890.12|guanylate cyclase 2e
mm39_v1_chrX_+_20554193_20554279	0.835123	En2	ENSMUST00000115364.8|Cdk16|ENSMUSG00000031065.15|cyclin-dependent kinase 16
mm39_v1_chr2_+_177760959_177760977	0.833693	En2	ENSMUST00000108916.8|Phactr3|ENSMUSG00000027525.19|phosphatase and actin regulator 3
mm39_v1_chr12_-_85327136_85327209	0.83296	En2	ENSMUST00000065913.8|Acyp1|ENSMUSG00000008822.16|acylphosphatase 1, erythrocyte (common) type	ENSMUST00000008966.13|Acyp1|ENSMUSG00000008822.16|acylphosphatase 1, erythrocyte (common) type
mm39_v1_chr2_+_109522781_109522889	0.828368	En2	ENSMUST00000111050.10|Bdnf|ENSMUSG00000048482.15|brain derived neurotrophic factor
mm39_v1_chr5_-_146157711_146157801	0.819463	En2	ENSMUST00000169407.9|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6	ENSMUST00000161331.8|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6	ENSMUST00000159074.3|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6	ENSMUST00000067837.10|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6
mm39_v1_chr18_+_39126325_39126336	0.815324	En2	ENSMUST00000137497.9|Arhgap26|ENSMUSG00000036452.19|Rho GTPase activating protein 26
mm39_v1_chr6_-_41752111_41752111	0.813523	En2	ENSMUST00000214976.3|Olfr459|ENSMUSG00000045479.8|olfactory receptor 459
mm39_v1_chr10_+_73657753_73657810	0.785497	En2	ENSMUST00000134009.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000177420.7|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000125006.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15
mm39_v1_chr2_-_88559941_88559941	0.761087	En2	ENSMUST00000099815.2|Olfr1197|ENSMUSG00000075119.3|olfactory receptor 1197
mm39_v1_chr10_-_25076008_25076076	0.759015	En2	ENSMUST00000100012.3|Akap7|ENSMUSG00000039166.17|A kinase (PRKA) anchor protein 7
mm39_v1_chrX_-_111315519_111315519	0.745367	En2	ENSMUST00000124335.8|Satl1|ENSMUSG00000025527.10|spermidine/spermine N1-acetyl transferase-like 1
mm39_v1_chr2_+_59442378_59442453	0.742667	En2	ENSMUST00000112568.8|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	ENSMUST00000037526.11|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm39_v1_chr9_+_20193647_20193647	0.7406	En2	ENSMUST00000071725.4|Olfr39|ENSMUSG00000059623.7|olfactory receptor 39	ENSMUST00000212983.3|Olfr39|ENSMUSG00000059623.7|olfactory receptor 39
mm39_v1_chr18_+_39126178_39126240	0.722185	En2	ENSMUST00000097593.9|Arhgap26|ENSMUSG00000036452.19|Rho GTPase activating protein 26
mm39_v1_chr8_-_35432783_35432869	0.715487	En2	ENSMUST00000033929.6|Tnks|ENSMUSG00000031529.6|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm39_v1_chr7_-_119494669_119494766	0.713201	En2	ENSMUST00000098080.9|Dcun1d3|ENSMUSG00000048787.14|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm39_v1_chr1_-_92412835_92412835	0.699203	En2	ENSMUST00000214928.3|Olfr1416|ENSMUSG00000067064.5|olfactory receptor 1416
mm39_v1_chr4_+_109835224_109835250	0.692521	En2	ENSMUST00000061187.4|Dmrta2|ENSMUSG00000047143.4|doublesex and mab-3 related transcription factor like family A2
mm39_v1_chr11_+_68950533_68950571	0.68822	En2	ENSMUST00000051888.4|Borcs6|ENSMUSG00000045176.4|BLOC-1 related complex subunit 6
mm39_v1_chr12_-_91815855_91815931	0.677287	En2	ENSMUST00000167466.2|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)	ENSMUST00000021347.12|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)	ENSMUST00000178462.8|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)
mm39_v1_chr4_+_108576846_108576846	0.675944	En2	ENSMUST00000178992.2|3110021N24Rik|ENSMUSG00000094958.2|RIKEN cDNA 3110021N24 gene
mm39_v1_chr3_+_103739877_103739917	0.66564	En2	ENSMUST00000062945.12|Bcl2l15|ENSMUSG00000044165.13|BCLl2-like 15
mm39_v1_chr8_-_84321032_84321061	0.663547	En2	ENSMUST00000163837.2|Tecr|ENSMUSG00000031708.18|trans-2,3-enoyl-CoA reductase
mm39_v1_chr17_+_26342474_26342530	0.663517	En2	ENSMUST00000025014.10|Mrpl28|ENSMUSG00000024181.10|mitochondrial ribosomal protein L28	ENSMUST00000236166.2|Mrpl28|ENSMUSG00000024181.10|mitochondrial ribosomal protein L28	ENSMUST00000127647.3|Mrpl28|ENSMUSG00000024181.10|mitochondrial ribosomal protein L28
mm39_v1_chr16_-_89368059_89368076	0.647586	En2	ENSMUST00000171542.2|Krtap11-1|ENSMUSG00000091212.2|keratin associated protein 11-1
mm39_v1_chr8_+_107757847_107757862	0.636763	En2	ENSMUST00000034388.10|Vps4a|ENSMUSG00000031913.10|vacuolar protein sorting 4A
mm39_v1_chr7_-_4815542_4815589	0.634802	En2	ENSMUST00000079496.9|Ube2s|ENSMUSG00000060860.9|ubiquitin-conjugating enzyme E2S
mm39_v1_chr6_-_23650297_23650308	0.615738	En2	ENSMUST00000063548.4|Rnf133|ENSMUSG00000051956.5|ring finger protein 133
mm39_v1_chr2_+_177760768_177760955	0.597551	En2	ENSMUST00000108917.8|Phactr3|ENSMUSG00000027525.19|phosphatase and actin regulator 3
mm39_v1_chr2_+_20742115_20742152	0.581381	En2	ENSMUST00000114606.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4	ENSMUST00000114608.3|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr4_+_116078830_116078872	0.561938	En2	ENSMUST00000030464.14|Pik3r3|ENSMUSG00000028698.14|phosphoinositide-3-kinase regulatory subunit 3
mm39_v1_chr2_-_111100733_111100733	0.555162	En2	ENSMUST00000099619.6|Olfr1277|ENSMUSG00000074965.6|olfactory receptor 1277
mm39_v1_chr18_+_37433852_37433888	0.545078	En2	ENSMUST00000051754.2|Pcdhb3|ENSMUSG00000045498.2|protocadherin beta 3
mm39_v1_chr19_-_6919755_6919818	0.538528	En2	ENSMUST00000099782.10|Gpr137|ENSMUSG00000024958.14|G protein-coupled receptor 137
mm39_v1_chr5_-_138185438_138185499	0.537945	En2	ENSMUST00000110937.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000139276.2|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000048698.14|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000123415.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6
mm39_v1_chr9_-_97252011_97252075	0.534762	En2	ENSMUST00000035026.5|Trim42|ENSMUSG00000032451.7|tripartite motif-containing 42
mm39_v1_chr9_+_38841385_38841385	0.533536	En2	ENSMUST00000058789.7|Olfr930|ENSMUSG00000063221.7|olfactory receptor 930
mm39_v1_chr3_-_92441809_92441826	0.527107	En2	ENSMUST00000193521.2|2310046K23Rik|ENSMUSG00000102308.2|RIKEN cDNA 2310046K23 gene
mm39_v1_chr1_-_169796709_169796810	0.523806	En2	ENSMUST00000027989.13|Hsd17b7|ENSMUSG00000026675.13|hydroxysteroid (17-beta) dehydrogenase 7	ENSMUST00000111353.4|Hsd17b7|ENSMUSG00000026675.13|hydroxysteroid (17-beta) dehydrogenase 7
mm39_v1_chr10_+_85222677_85222704	0.522968	En2	ENSMUST00000105307.8|Btbd11|ENSMUSG00000020042.16|BTB (POZ) domain containing 11	ENSMUST00000020231.10|Btbd11|ENSMUSG00000020042.16|BTB (POZ) domain containing 11
mm39_v1_chr7_-_25454177_25454197	0.520216	En2	ENSMUST00000206832.2|Hnrnpul1|ENSMUSG00000040725.14|heterogeneous nuclear ribonucleoprotein U-like 1
mm39_v1_chr7_-_10488291_10488291	0.501421	En2	ENSMUST00000226874.2|Vmn1r71|ENSMUSG00000059206.5|vomeronasal 1 receptor 71	ENSMUST00000227003.2|Vmn1r71|ENSMUSG00000059206.5|vomeronasal 1 receptor 71	ENSMUST00000228561.2|Vmn1r71|ENSMUSG00000059206.5|vomeronasal 1 receptor 71	ENSMUST00000228248.2|Vmn1r71|ENSMUSG00000059206.5|vomeronasal 1 receptor 71	ENSMUST00000228526.2|Vmn1r71|ENSMUSG00000059206.5|vomeronasal 1 receptor 71	ENSMUST00000228098.2|Vmn1r71|ENSMUSG00000059206.5|vomeronasal 1 receptor 71	ENSMUST00000227940.2|Vmn1r71|ENSMUSG00000059206.5|vomeronasal 1 receptor 71	ENSMUST00000228374.2|Vmn1r71|ENSMUSG00000059206.5|vomeronasal 1 receptor 71	ENSMUST00000227702.2|Vmn1r71|ENSMUSG00000059206.5|vomeronasal 1 receptor 71
mm39_v1_chr9_-_96601574_96601618	0.4928	En2	ENSMUST00000128269.8|Zbtb38|ENSMUSG00000040433.17|zinc finger and BTB domain containing 38
mm39_v1_chr1_-_79417732_79417837	0.491324	En2	ENSMUST00000185234.2|Scg2|ENSMUSG00000050711.8|secretogranin II	ENSMUST00000049972.6|Scg2|ENSMUSG00000050711.8|secretogranin II
mm39_v1_chr11_-_99241924_99241937	0.484732	En2	ENSMUST00000017732.3|Krt27|ENSMUSG00000017588.3|keratin 27
mm39_v1_chr6_-_87827993_87828088	0.482842	En2	ENSMUST00000204890.3|Cnbp|ENSMUSG00000030057.16|cellular nucleic acid binding protein	ENSMUST00000113617.3|Cnbp|ENSMUSG00000030057.16|cellular nucleic acid binding protein	ENSMUST00000113619.8|Cnbp|ENSMUSG00000030057.16|cellular nucleic acid binding protein	ENSMUST00000204653.3|Cnbp|ENSMUSG00000030057.16|cellular nucleic acid binding protein	ENSMUST00000032138.15|Cnbp|ENSMUSG00000030057.16|cellular nucleic acid binding protein
mm39_v1_chr4_-_43823866_43823895	0.481221	En2	ENSMUST00000215406.2|Olfr156|ENSMUSG00000110970.3|olfactory receptor 156	ENSMUST00000079234.6|Olfr156|ENSMUSG00000110970.3|olfactory receptor 156	ENSMUST00000214843.2|Olfr156|ENSMUSG00000110970.3|olfactory receptor 156
mm39_v1_chr15_-_79658608_79658673	0.478438	En2	ENSMUST00000229644.2|Dnal4|ENSMUSG00000022420.17|dynein, axonemal, light chain 4	ENSMUST00000023055.8|Dnal4|ENSMUSG00000022420.17|dynein, axonemal, light chain 4
mm39_v1_chr13_+_34918820_34918846	0.47702	En2	ENSMUST00000039605.8|Fam50b|ENSMUSG00000038246.8|family with sequence similarity 50, member B
mm39_v1_chr7_+_25380195_25380258	0.47123	En2	ENSMUST00000205658.2|B9d2|ENSMUSG00000063439.8|B9 protein domain 2
mm39_v1_chr9_-_40039335_40039335	0.470111	En2	ENSMUST00000060345.6|Olfr985|ENSMUSG00000049073.8|olfactory receptor 985
mm39_v1_chr17_+_38104420_38104420	0.459813	En2	ENSMUST00000216051.3|Olfr123|ENSMUSG00000045202.7|olfactory receptor 123
mm39_v1_chr5_-_124387812_124387845	0.458012	En2	ENSMUST00000162812.8|Pitpnm2|ENSMUSG00000029406.16|phosphatidylinositol transfer protein, membrane-associated 2
mm39_v1_chr2_-_86109346_86109432	0.444743	En2	ENSMUST00000217294.2|Olfr1051|ENSMUSG00000075193.3|olfactory receptor 1051	ENSMUST00000217245.2|Olfr1051|ENSMUSG00000075193.3|olfactory receptor 1051	ENSMUST00000216432.2|Olfr1051|ENSMUSG00000075193.3|olfactory receptor 1051
mm39_v1_chr16_-_22676264_22676419	0.438496	En2	ENSMUST00000232075.2|Tbccd1|ENSMUSG00000004462.8|TBCC domain containing 1	ENSMUST00000004576.8|Tbccd1|ENSMUSG00000004462.8|TBCC domain containing 1
mm39_v1_chr1_-_132318039_132318105	0.43566	En2	ENSMUST00000132435.2|Tmcc2|ENSMUSG00000042066.17|transmembrane and coiled-coil domains 2
mm39_v1_chr5_-_74692327_74692420	0.433075	En2	ENSMUST00000072857.13|Scfd2|ENSMUSG00000062110.15|Sec1 family domain containing 2	ENSMUST00000113542.9|Scfd2|ENSMUSG00000062110.15|Sec1 family domain containing 2	ENSMUST00000151474.3|Scfd2|ENSMUSG00000062110.15|Sec1 family domain containing 2
mm39_v1_chr4_+_115747862_115747863	0.424066	En2	ENSMUST00000132221.3|6430628N08Rik|ENSMUSG00000034185.10|RIKEN cDNA 6430628N08 gene	ENSMUST00000165938.2|6430628N08Rik|ENSMUSG00000034185.10|RIKEN cDNA 6430628N08 gene
mm39_v1_chr15_-_79658584_79658603	0.420092	En2	ENSMUST00000069877.12|Dnal4|ENSMUSG00000022420.17|dynein, axonemal, light chain 4
mm39_v1_chr18_+_23548534_23548567	0.419874	En2	ENSMUST00000221880.2|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha	ENSMUST00000220904.2|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha	ENSMUST00000047954.15|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha
mm39_v1_chr17_-_37409147_37409170	0.414276	En2	ENSMUST00000216376.2|Olfr91|ENSMUSG00000095377.3|olfactory receptor 91	ENSMUST00000217372.2|Olfr91|ENSMUSG00000095377.3|olfactory receptor 91
mm39_v1_chr7_-_25454126_25454176	0.408641	En2	ENSMUST00000108401.3|Hnrnpul1|ENSMUSG00000040725.14|heterogeneous nuclear ribonucleoprotein U-like 1	ENSMUST00000043765.14|Hnrnpul1|ENSMUSG00000040725.14|heterogeneous nuclear ribonucleoprotein U-like 1
mm39_v1_chr17_-_36773221_36773226	0.407297	En2	ENSMUST00000169950.2|H2-M10.4|ENSMUSG00000048231.15|histocompatibility 2, M region locus 10.4	ENSMUST00000057502.14|H2-M10.4|ENSMUSG00000048231.15|histocompatibility 2, M region locus 10.4
mm39_v1_chr11_-_99228756_99228793	0.404249	En2	ENSMUST00000100482.3|Krt26|ENSMUSG00000075570.3|keratin 26
mm39_v1_chr11_-_99441687_99441693	0.3937	En2	ENSMUST00000092700.5|Krtap3-3|ENSMUSG00000069722.5|keratin associated protein 3-3
mm39_v1_chr9_+_18354752_18354752	0.374493	En2	ENSMUST00000051008.9|Mbd3l2|ENSMUSG00000047508.10|methyl-CpG binding domain protein 3-like 2
mm39_v1_chr2_-_87322762_87322762	0.371361	En2	ENSMUST00000026957.4|Pramel7|ENSMUSG00000025839.4|PRAME like 7
mm39_v1_chr14_-_63221950_63221965	0.368793	En2	ENSMUST00000100493.3|Defb48|ENSMUSG00000075574.3|defensin beta 48
mm39_v1_chr7_+_63835154_63835207	0.366096	En2	ENSMUST00000177102.8|Trpm1|ENSMUSG00000030523.19|transient receptor potential cation channel, subfamily M, member 1
mm39_v1_chr10_-_76276278_76276278	0.363984	En2	ENSMUST00000235907.2|ENSMUSG00000117965.2|ENSMUSG00000117965.2|novel protein
mm39_v1_chr11_+_116734104_116734104	0.359306	En2	ENSMUST00000106370.10|Mettl23|ENSMUSG00000090266.11|methyltransferase like 23
mm39_v1_chr11_+_120358461_120358545	0.354587	En2	ENSMUST00000140862.7|Hgs|ENSMUSG00000025793.18|HGF-regulated tyrosine kinase substrate	ENSMUST00000106205.9|Hgs|ENSMUSG00000025793.18|HGF-regulated tyrosine kinase substrate	ENSMUST00000106203.9|Hgs|ENSMUSG00000025793.18|HGF-regulated tyrosine kinase substrate
mm39_v1_chr17_+_38104635_38104635	0.333356	En2	ENSMUST00000214770.3|Olfr123|ENSMUSG00000045202.7|olfactory receptor 123
mm39_v1_chr12_-_83609217_83609241	0.333151	En2	ENSMUST00000222448.2|Zfyve1|ENSMUSG00000042628.9|zinc finger, FYVE domain containing 1
mm39_v1_chr3_+_103740056_103740156	0.321327	En2	ENSMUST00000106822.2|Bcl2l15|ENSMUSG00000044165.13|BCLl2-like 15
mm39_v1_chr2_+_14878480_14878520	0.320661	En2	ENSMUST00000114719.7|Cacnb2|ENSMUSG00000057914.16|calcium channel, voltage-dependent, beta 2 subunit
mm39_v1_chr5_-_138185686_138185724	0.313431	En2	ENSMUST00000110936.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6
mm39_v1_chr5_-_150441629_150441629	0.31279	En2	ENSMUST00000118769.2|Zar1l|ENSMUSG00000056586.9|zygote arrest 1-like
mm39_v1_chr9_+_37829844_37829844	0.311873	En2	ENSMUST00000212878.2|Olfr878|ENSMUSG00000066747.7|olfactory receptor 878	ENSMUST00000086061.4|Olfr878|ENSMUSG00000066747.7|olfactory receptor 878
mm39_v1_chr10_-_128918779_128918779	0.311594	En2	ENSMUST00000213579.2|Olfr767|ENSMUSG00000059762.5|olfactory receptor 767
mm39_v1_chr11_-_73290321_73290440	0.305844	En2	ENSMUST00000131253.2|Olfr1|ENSMUSG00000069823.12|olfactory receptor 1	ENSMUST00000120303.9|Olfr1|ENSMUSG00000069823.12|olfactory receptor 1
mm39_v1_chr15_+_82230155_82230304	0.305667	En2	ENSMUST00000023086.15|Smdt1|ENSMUSG00000022452.17|single-pass membrane protein with aspartate rich tail 1
mm39_v1_chr8_+_95807814_95807833	0.303828	En2	ENSMUST00000034239.9|Katnb1|ENSMUSG00000031787.9|katanin p80 (WD40-containing) subunit B 1
mm39_v1_chr9_+_19716202_19716204	0.287768	En2	ENSMUST00000212540.3|Olfr859|ENSMUSG00000095448.4|olfactory receptor 859	ENSMUST00000217280.2|Olfr859|ENSMUSG00000095448.4|olfactory receptor 859
mm39_v1_chr7_+_101545547_101545638	0.283915	En2	ENSMUST00000035395.14|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000106973.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000144207.9|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr6_-_50433064_50433155	0.279436	En2	ENSMUST00000146341.4|Osbpl3|ENSMUSG00000029822.16|oxysterol binding protein-like 3	ENSMUST00000071728.11|Osbpl3|ENSMUSG00000029822.16|oxysterol binding protein-like 3
mm39_v1_chr4_+_42949814_42949924	0.279032	En2	ENSMUST00000037872.10|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5	ENSMUST00000098112.9|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5
mm39_v1_chr18_+_24737009_24737051	0.274772	En2	ENSMUST00000234266.2|Elp2|ENSMUSG00000024271.9|elongator acetyltransferase complex subunit 2	ENSMUST00000025120.8|Elp2|ENSMUSG00000024271.9|elongator acetyltransferase complex subunit 2
mm39_v1_chr2_+_85838122_85838122	0.268748	En2	ENSMUST00000062166.2|Olfr1032|ENSMUSG00000042796.3|olfactory receptor 1032
mm39_v1_chr1_+_92545510_92545510	0.264944	En2	ENSMUST00000213247.2|Olfr12|ENSMUSG00000061616.6|olfactory receptor 12
mm39_v1_chr1_-_131455039_131455123	0.264318	En2	ENSMUST00000097588.9|Srgap2|ENSMUSG00000026425.16|SLIT-ROBO Rho GTPase activating protein 2	ENSMUST00000186543.7|Srgap2|ENSMUSG00000026425.16|SLIT-ROBO Rho GTPase activating protein 2
mm39_v1_chr14_+_50360643_50360643	0.26241	En2	ENSMUST00000215317.2|Olfr727|ENSMUSG00000059488.4|olfactory receptor 727
mm39_v1_chr16_+_3410262_3410262	0.254014	En2	ENSMUST00000061541.2|Olfr161|ENSMUSG00000051003.3|olfactory receptor 161
mm39_v1_chr2_+_90229027_90229027	0.250972	En2	ENSMUST00000216111.3|Olfr1274|ENSMUSG00000082980.6|olfactory receptor 1274
mm39_v1_chr3_-_32546380_32546380	0.24788	En2	ENSMUST00000164954.3|Kcnmb3|ENSMUSG00000091091.3|potassium large conductance calcium-activated channel, subfamily M, beta member 3
mm39_v1_chr1_+_131455635_131455661	0.231215	En2	ENSMUST00000068613.5|Fam72a|ENSMUSG00000055184.5|family with sequence similarity 72, member A
mm39_v1_chr10_-_126956991_126957019	0.225731	En2	ENSMUST00000080975.6|Os9|ENSMUSG00000040462.14|amplified in osteosarcoma	ENSMUST00000164259.9|Os9|ENSMUSG00000040462.14|amplified in osteosarcoma
mm39_v1_chr19_+_12364643_12364664	0.209341	En2	ENSMUST00000217062.3|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440	ENSMUST00000216145.2|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440	ENSMUST00000213657.2|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440
mm39_v1_chr16_+_22676589_22676664	0.209164	En2	ENSMUST00000004574.14|Dnajb11|ENSMUSG00000004460.18|DnaJ heat shock protein family (Hsp40) member B11	ENSMUST00000178320.2|Dnajb11|ENSMUSG00000004460.18|DnaJ heat shock protein family (Hsp40) member B11	ENSMUST00000166487.10|Dnajb11|ENSMUSG00000004460.18|DnaJ heat shock protein family (Hsp40) member B11
mm39_v1_chr17_+_21031817_21031880	0.198933	En2	ENSMUST00000232810.2|Vmn1r229|ENSMUSG00000117148.2|vomeronasal 1 receptor 229	ENSMUST00000233712.2|Vmn1r229|ENSMUSG00000117148.2|vomeronasal 1 receptor 229	ENSMUST00000232852.2|Vmn1r229|ENSMUSG00000117148.2|vomeronasal 1 receptor 229
mm39_v1_chr18_+_23885390_23885458	0.189436	En2	ENSMUST00000170802.8|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2	ENSMUST00000155708.8|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2	ENSMUST00000118826.9|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2
mm39_v1_chr8_+_10299288_10299367	0.179907	En2	ENSMUST00000214643.2|Myo16|ENSMUSG00000039057.12|myosin XVI
mm39_v1_chr2_+_153780138_153780143	0.179836	En2	ENSMUST00000109757.8|Bpifb4|ENSMUSG00000074665.12|BPI fold containing family B, member 4	ENSMUST00000154281.3|Bpifb4|ENSMUSG00000074665.12|BPI fold containing family B, member 4
mm39_v1_chr2_+_89821818_89821818	0.175695	En2	ENSMUST00000216953.3|Olfr1261|ENSMUSG00000061295.6|olfactory receptor 1261
mm39_v1_chr17_-_37511885_37511885	0.169351	En2	ENSMUST00000222190.2|Olfr94|ENSMUSG00000043827.10|olfactory receptor 94
mm39_v1_chr11_+_60428788_60428810	0.169287	En2	ENSMUST00000044250.4|Alkbh5|ENSMUSG00000042650.4|alkB homolog 5, RNA demethylase
mm39_v1_chr14_-_36820304_36820321	0.163721	En2	ENSMUST00000022337.11|Cdhr1|ENSMUSG00000021803.11|cadherin-related family member 1
mm39_v1_chr12_+_99930757_99930798	0.161685	En2	ENSMUST00000160413.8|Kcnk13|ENSMUSG00000045404.17|potassium channel, subfamily K, member 13	ENSMUST00000177549.8|Kcnk13|ENSMUSG00000045404.17|potassium channel, subfamily K, member 13	ENSMUST00000049788.9|Kcnk13|ENSMUSG00000045404.17|potassium channel, subfamily K, member 13
mm39_v1_chr7_-_115797722_115797796	0.15079	En2	ENSMUST00000181981.8|Plekha7|ENSMUSG00000045659.19|pleckstrin homology domain containing, family A member 7
mm39_v1_chrX_+_101847829_101847829	0.141016	En2	ENSMUST00000131451.2|Dmrtc1c1|ENSMUSG00000067562.12|DMRT-like family C1c1
mm39_v1_chr11_-_20282684_20282770	0.140013	En2	ENSMUST00000004634.7|Slc1a4|ENSMUSG00000020142.13|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	ENSMUST00000109594.8|Slc1a4|ENSMUSG00000020142.13|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm39_v1_chr7_+_106630381_106630381	0.139502	En2	ENSMUST00000213623.2|Olfr713|ENSMUSG00000073898.4|olfactory receptor 713
mm39_v1_chr3_+_19242274_19242288	0.132752	En2	ENSMUST00000130645.8|Mtfr1|ENSMUSG00000027601.14|mitochondrial fission regulator 1
mm39_v1_chr1_-_92446383_92446383	0.127589	En2	ENSMUST00000062353.12|Olfr1414|ENSMUSG00000042849.12|olfactory receptor 1414
mm39_v1_chr5_-_36641456_36641650	0.115096	En2	ENSMUST00000119916.2|Tada2b|ENSMUSG00000029196.10|transcriptional adaptor 2B	ENSMUST00000031097.8|Tada2b|ENSMUSG00000029196.10|transcriptional adaptor 2B
mm39_v1_chr11_-_115078147_115078216	0.11139	En2	ENSMUST00000103038.8|Nat9|ENSMUSG00000015542.18|N-acetyltransferase 9 (GCN5-related, putative)	ENSMUST00000103039.2|Nat9|ENSMUSG00000015542.18|N-acetyltransferase 9 (GCN5-related, putative)	ENSMUST00000103040.11|Nat9|ENSMUSG00000015542.18|N-acetyltransferase 9 (GCN5-related, putative)
mm39_v1_chr8_-_3674993_3675015	0.106577	En2	ENSMUST00000142431.8|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chr1_+_161322219_161322225	0.102902	En2	ENSMUST00000086084.2|Tnfsf18|ENSMUSG00000066755.3|tumor necrosis factor (ligand) superfamily, member 18
mm39_v1_chr5_-_106844685_106844707	0.0992207	En2	ENSMUST00000127434.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112696.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112698.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644
mm39_v1_chr17_+_87979951_87980037	0.0968306	En2	ENSMUST00000172855.2|Msh2|ENSMUSG00000024151.14|mutS homolog 2
mm39_v1_chr13_-_22227114_22227139	0.0965549	En2	ENSMUST00000091741.6|H2ac11|ENSMUSG00000069301.6|H2A clustered histone 11
mm39_v1_chr9_-_20247390_20247390	0.0927928	En2	ENSMUST00000212943.4|Olfr18|ENSMUSG00000066896.7|olfactory receptor 18	ENSMUST00000086473.4|Olfr18|ENSMUSG00000066896.7|olfactory receptor 18
mm39_v1_chr6_-_23650205_23650271	0.0901583	En2	ENSMUST00000115354.2|Rnf133|ENSMUSG00000051956.5|ring finger protein 133
mm39_v1_chr14_+_52892115_52892274	0.0753531	En2	ENSMUST00000198019.2|Trav7-1|ENSMUSG00000104620.2|T cell receptor alpha variable 7-1
mm39_v1_chr6_-_71609881_71609974	0.071328	En2	ENSMUST00000065509.11|Kdm3a|ENSMUSG00000053470.14|lysine (K)-specific demethylase 3A	ENSMUST00000207023.2|Kdm3a|ENSMUSG00000053470.14|lysine (K)-specific demethylase 3A
mm39_v1_chr9_+_37683933_37683933	0.0654661	En2	ENSMUST00000080634.4|Olfr875|ENSMUSG00000058628.5|olfactory receptor 875
mm39_v1_chr19_-_15901919_15901986	0.062065	En2	ENSMUST00000162053.8|Psat1|ENSMUSG00000024640.10|phosphoserine aminotransferase 1
mm39_v1_chr7_+_63835285_63835349	0.0610467	En2	ENSMUST00000206263.2|Trpm1|ENSMUSG00000030523.19|transient receptor potential cation channel, subfamily M, member 1	ENSMUST00000206107.2|Trpm1|ENSMUSG00000030523.19|transient receptor potential cation channel, subfamily M, member 1	ENSMUST00000205731.2|Trpm1|ENSMUSG00000030523.19|transient receptor potential cation channel, subfamily M, member 1	ENSMUST00000206706.2|Trpm1|ENSMUSG00000030523.19|transient receptor potential cation channel, subfamily M, member 1	ENSMUST00000205690.2|Trpm1|ENSMUSG00000030523.19|transient receptor potential cation channel, subfamily M, member 1
mm39_v1_chr12_-_104439589_104439633	0.0578968	En2	ENSMUST00000021513.6|Gsc|ENSMUSG00000021095.6|goosecoid homeobox
mm39_v1_chr14_-_52273600_52273600	0.0562432	En2	ENSMUST00000214342.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221
mm39_v1_chr17_-_37430949_37430975	0.0492717	En2	ENSMUST00000214994.2|Olfr92|ENSMUSG00000096477.3|olfactory receptor 92	ENSMUST00000216341.2|Olfr92|ENSMUSG00000096477.3|olfactory receptor 92
mm39_v1_chr3_-_141687987_141688025	0.0477637	En2	ENSMUST00000029948.15|Bmpr1b|ENSMUSG00000052430.16|bone morphogenetic protein receptor, type 1B
mm39_v1_chr10_+_73782857_73782903	0.0462482	En2	ENSMUST00000191709.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000193739.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000195531.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15
mm39_v1_chrX_+_128650486_128650574	0.0325589	En2	ENSMUST00000167619.9|Diaph2|ENSMUSG00000034480.19|diaphanous related formin 2	ENSMUST00000037854.15|Diaph2|ENSMUSG00000034480.19|diaphanous related formin 2
mm39_v1_chr6_+_28480336_28480369	0.031634	En2	ENSMUST00000001460.14|Snd1|ENSMUSG00000001424.15|staphylococcal nuclease and tudor domain containing 1	ENSMUST00000167201.2|Snd1|ENSMUSG00000001424.15|staphylococcal nuclease and tudor domain containing 1
mm39_v1_chr19_+_6096606_6096692	0.0295526	En2	ENSMUST00000138532.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin	ENSMUST00000129081.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin	ENSMUST00000156550.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin
mm39_v1_chr1_+_150195158_150195200	0.0260939	En2	ENSMUST00000165062.8|Pdc|ENSMUSG00000006007.15|phosducin	ENSMUST00000191228.7|Pdc|ENSMUSG00000006007.15|phosducin	ENSMUST00000186572.7|Pdc|ENSMUSG00000006007.15|phosducin	ENSMUST00000185698.2|Pdc|ENSMUSG00000006007.15|phosducin
mm39_v1_chr5_+_36641922_36641964	0.0180344	En2	ENSMUST00000060100.3|Ccdc96|ENSMUSG00000050677.3|coiled-coil domain containing 96
mm39_v1_chr4_-_52856572_52856572	0.0117838	En2	ENSMUST00000051520.3|Olfr273|ENSMUSG00000049648.5|olfactory receptor 273
mm39_v1_chr16_+_3648742_3648762	0.0115624	En2	ENSMUST00000214238.2|Olfr15|ENSMUSG00000059043.3|olfactory receptor 15	ENSMUST00000214590.2|Olfr15|ENSMUSG00000059043.3|olfactory receptor 15
mm39_v1_chr13_-_22017677_22017677	0.0113959	En2	ENSMUST00000081342.7|H2ac24|ENSMUSG00000094777.3|H2A clustered histone 24
mm39_v1_chr2_-_88531671_88531671	0.00918402	En2	ENSMUST00000104892.2|Olfr1196|ENSMUSG00000075120.5|olfactory receptor 1196
mm39_v1_chr2_+_111355548_111355548	0.00910389	En2	ENSMUST00000217845.3|Olfr1293-ps|ENSMUSG00000108908.5|olfactory receptor 1293, pseudogene
mm39_v1_chr14_+_53328803_53328803	0.00887995	En2	ENSMUST00000103609.2|Trav7n-4|ENSMUSG00000095736.2|T cell receptor alpha variable 7N-4
mm39_v1_chr3_-_151953894_151953912	0.00571017	En2	ENSMUST00000196529.5|Nexn|ENSMUSG00000039103.13|nexilin
mm39_v1_chrX_+_94942639_94942639	0.00477009	En2	ENSMUST00000082183.8|Zc3h12b|ENSMUSG00000035045.18|zinc finger CCCH-type containing 12B
mm39_v1_chr6_+_132928065_132928065	0.00320768	En2	ENSMUST00000070991.5|Tas2r129|ENSMUSG00000063762.6|taste receptor, type 2, member 129
