mm39_v1_chr3_-_106057077_106057108	3.23536	Foxg1	ENSMUST00000149836.2|Chil3|ENSMUSG00000040809.11|chitinase-like 3
mm39_v1_chr2_-_154400753_154400816	2.23658	Foxg1	ENSMUST00000109716.9|Necab3|ENSMUSG00000027489.16|N-terminal EF-hand calcium binding protein 3	ENSMUST00000000895.13|Necab3|ENSMUSG00000027489.16|N-terminal EF-hand calcium binding protein 3	ENSMUST00000125793.2|Necab3|ENSMUSG00000027489.16|N-terminal EF-hand calcium binding protein 3
mm39_v1_chr15_+_79775894_79775905	2.1377	Foxg1	ENSMUST00000177483.8|Apobec3|ENSMUSG00000009585.19|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3
mm39_v1_chr7_+_142558783_142558835	2.08711	Foxg1	ENSMUST00000009396.13|Tspan32|ENSMUSG00000000244.18|tetraspanin 32
mm39_v1_chr8_+_112263465_112263484	1.91568	Foxg1	ENSMUST00000095176.12|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1
mm39_v1_chr7_+_142558837_142558881	1.87193	Foxg1	ENSMUST00000207211.2|Tspan32|ENSMUSG00000000244.18|tetraspanin 32
mm39_v1_chr4_+_155045372_155045387	1.73612	Foxg1	ENSMUST00000049621.7|Hes5|ENSMUSG00000048001.8|hes family bHLH transcription factor 5
mm39_v1_chr15_+_79775819_79775878	1.69533	Foxg1	ENSMUST00000177350.8|Apobec3|ENSMUSG00000009585.19|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3
mm39_v1_chr8_+_112263632_112263752	1.69477	Foxg1	ENSMUST00000173506.8|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1
mm39_v1_chr3_-_50398027_50398063	1.65497	Foxg1	ENSMUST00000029297.6|Slc7a11|ENSMUSG00000027737.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	ENSMUST00000194462.6|Slc7a11|ENSMUSG00000027737.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm39_v1_chr1_-_79838897_79839020	1.43861	Foxg1	ENSMUST00000190724.2|Serpine2|ENSMUSG00000026249.11|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm39_v1_chr8_+_112262729_112262815	1.37515	Foxg1	ENSMUST00000172856.8|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1
mm39_v1_chr2_+_120331784_120331815	1.30789	Foxg1	ENSMUST00000151342.3|Capn3|ENSMUSG00000079110.13|calpain 3
mm39_v1_chr8_+_112263255_112263272	1.30683	Foxg1	ENSMUST00000171182.8|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1	ENSMUST00000168428.8|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1
mm39_v1_chr2_-_152672535_152672600	1.29493	Foxg1	ENSMUST00000146380.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000134902.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000134357.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000109820.5|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1
mm39_v1_chr18_+_68433422_68433493	1.28083	Foxg1	ENSMUST00000009679.11|Rnmt|ENSMUSG00000009535.14|RNA (guanine-7-) methyltransferase	ENSMUST00000131075.8|Rnmt|ENSMUSG00000009535.14|RNA (guanine-7-) methyltransferase	ENSMUST00000025427.14|Rnmt|ENSMUSG00000009535.14|RNA (guanine-7-) methyltransferase	ENSMUST00000139111.2|Rnmt|ENSMUSG00000009535.14|RNA (guanine-7-) methyltransferase
mm39_v1_chr9_+_13298301_13298348	1.18071	Foxg1	ENSMUST00000159294.9|Maml2|ENSMUSG00000031925.18|mastermind like transcriptional coactivator 2
mm39_v1_chr13_+_34346936_34347016	1.17609	Foxg1	ENSMUST00000124996.8|Psmg4|ENSMUSG00000071451.11|proteasome (prosome, macropain) assembly chaperone 4	ENSMUST00000147632.3|Psmg4|ENSMUSG00000071451.11|proteasome (prosome, macropain) assembly chaperone 4
mm39_v1_chr18_+_73992446_73992473	1.11379	Foxg1	ENSMUST00000120033.8|Mro|ENSMUSG00000064036.16|maestro	ENSMUST00000179472.8|Mro|ENSMUSG00000064036.16|maestro	ENSMUST00000119239.8|Mro|ENSMUSG00000064036.16|maestro
mm39_v1_chr3_+_84081411_84081411	1.06523	Foxg1	ENSMUST00000193882.2|Gm6525|ENSMUSG00000104043.2|predicted pseudogene 6525
mm39_v1_chr5_+_34527230_34527323	1.03017	Foxg1	ENSMUST00000180376.8|Fam193a|ENSMUSG00000037210.17|family with sequence homology 193, member A
mm39_v1_chr11_-_119932573_119932618	1.0163	Foxg1	ENSMUST00000103019.2|Aatk|ENSMUSG00000025375.16|apoptosis-associated tyrosine kinase
mm39_v1_chr5_-_142892457_142892509	0.954933	Foxg1	ENSMUST00000167721.8|Actb|ENSMUSG00000029580.15|actin, beta	ENSMUST00000163829.2|Actb|ENSMUSG00000029580.15|actin, beta	ENSMUST00000100497.11|Actb|ENSMUSG00000029580.15|actin, beta
mm39_v1_chr11_-_97635484_97635571	0.896585	Foxg1	ENSMUST00000018691.9|Pip4k2b|ENSMUSG00000018547.9|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm39_v1_chr17_+_81251997_81252073	0.850703	Foxg1	ENSMUST00000025092.5|Tmem178|ENSMUSG00000024245.5|transmembrane protein 178
mm39_v1_chr12_-_112964279_112964324	0.843807	Foxg1	ENSMUST00000011302.9|Brf1|ENSMUSG00000011158.9|BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
mm39_v1_chr15_-_85466009_85466022	0.835928	Foxg1	ENSMUST00000023015.15|Wnt7b|ENSMUSG00000022382.16|wingless-type MMTV integration site family, member 7B
mm39_v1_chr7_+_79848138_79848207	0.767707	Foxg1	ENSMUST00000205822.2|Sema4b|ENSMUSG00000030539.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm39_v1_chr6_-_72322116_72322189	0.762769	Foxg1	ENSMUST00000070345.5|Usp39|ENSMUSG00000056305.5|ubiquitin specific peptidase 39
mm39_v1_chr1_-_180641159_180641197	0.701581	Foxg1	ENSMUST00000162118.8|H3f3a|ENSMUSG00000060743.13|H3.3 histone A	ENSMUST00000159685.2|H3f3a|ENSMUSG00000060743.13|H3.3 histone A	ENSMUST00000161308.8|H3f3a|ENSMUSG00000060743.13|H3.3 histone A
mm39_v1_chr8_+_46616688_46616767	0.694579	Foxg1	ENSMUST00000034048.13|Cfap97|ENSMUSG00000031631.16|cilia and flagella associated protein 97	ENSMUST00000145229.2|Cfap97|ENSMUSG00000031631.16|cilia and flagella associated protein 97
mm39_v1_chr15_+_103148824_103148921	0.69048	Foxg1	ENSMUST00000036004.16|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1	ENSMUST00000087351.9|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1	ENSMUST00000231141.2|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1
mm39_v1_chr8_+_46616770_46616788	0.622849	Foxg1	ENSMUST00000110376.8|Cfap97|ENSMUSG00000031631.16|cilia and flagella associated protein 97
mm39_v1_chr6_-_129694095_129694095	0.565645	Foxg1	ENSMUST00000088046.2|Klri1|ENSMUSG00000067610.2|killer cell lectin-like receptor family I member 1
mm39_v1_chr9_+_106048116_106048153	0.540001	Foxg1	ENSMUST00000020490.13|Wdr82|ENSMUSG00000020257.14|WD repeat domain containing 82
mm39_v1_chr15_+_66449385_66449487	0.519177	Foxg1	ENSMUST00000230882.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000048188.10|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000230948.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000229160.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1
mm39_v1_chr7_+_75498058_75498189	0.467607	Foxg1	ENSMUST00000171155.4|Klhl25|ENSMUSG00000055652.15|kelch-like 25	ENSMUST00000092073.11|Klhl25|ENSMUSG00000055652.15|kelch-like 25	ENSMUST00000206019.2|Klhl25|ENSMUSG00000055652.15|kelch-like 25	ENSMUST00000205612.2|Klhl25|ENSMUSG00000055652.15|kelch-like 25	ENSMUST00000205887.2|Klhl25|ENSMUSG00000055652.15|kelch-like 25
mm39_v1_chr8_+_84793453_84793511	0.466514	Foxg1	ENSMUST00000211046.2|Rfx1|ENSMUSG00000031706.8|regulatory factor X, 1 (influences HLA class II expression)	ENSMUST00000005600.6|Rfx1|ENSMUSG00000031706.8|regulatory factor X, 1 (influences HLA class II expression)
mm39_v1_chr2_+_4394425_4394498	0.407352	Foxg1	ENSMUST00000115037.9|Frmd4a|ENSMUSG00000026657.18|FERM domain containing 4A
mm39_v1_chr16_+_88954838_88954841	0.406928	Foxg1	ENSMUST00000062524.6|Gm9789|ENSMUSG00000044227.6|predicted gene 9789
mm39_v1_chr4_-_108690805_108690827	0.404751	Foxg1	ENSMUST00000102742.11|Btf3l4|ENSMUSG00000028568.17|basic transcription factor 3-like 4
mm39_v1_chr3_-_94922525_94922572	0.39381	Foxg1	ENSMUST00000128438.2|Zfp687|ENSMUSG00000019338.14|zinc finger protein 687	ENSMUST00000149747.2|Zfp687|ENSMUSG00000019338.14|zinc finger protein 687	ENSMUST00000019482.8|Zfp687|ENSMUSG00000019338.14|zinc finger protein 687
mm39_v1_chr1_-_72914036_72914050	0.392707	Foxg1	ENSMUST00000027377.9|Igfbp5|ENSMUSG00000026185.9|insulin-like growth factor binding protein 5
mm39_v1_chr7_-_99345016_99345062	0.375629	Foxg1	ENSMUST00000107086.9|Slco2b1|ENSMUSG00000030737.18|solute carrier organic anion transporter family, member 2b1
mm39_v1_chr1_-_160405464_160405544	0.372324	Foxg1	ENSMUST00000238289.2|Gpr52|ENSMUSG00000118401.2|G protein-coupled receptor 52
mm39_v1_chr1_-_180641099_180641148	0.300562	Foxg1	ENSMUST00000159789.2|H3f3a|ENSMUSG00000060743.13|H3.3 histone A	ENSMUST00000081026.11|H3f3a|ENSMUSG00000060743.13|H3.3 histone A
mm39_v1_chr9_-_60557076_60557087	0.284909	Foxg1	ENSMUST00000053171.14|Lrrc49|ENSMUSG00000047766.16|leucine rich repeat containing 49
mm39_v1_chr5_-_106844396_106844516	0.280712	Foxg1	ENSMUST00000137285.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000124263.2|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000149128.3|Gm28039|ENSMUSG00000098302.2|predicted gene, 28039	ENSMUST00000112695.4|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000155495.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000135108.2|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644
mm39_v1_chr1_+_82817170_82817239	0.264339	Foxg1	ENSMUST00000189220.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000113444.8|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr4_-_108690741_108690794	0.24904	Foxg1	ENSMUST00000102740.8|Btf3l4|ENSMUSG00000028568.17|basic transcription factor 3-like 4	ENSMUST00000102741.8|Btf3l4|ENSMUSG00000028568.17|basic transcription factor 3-like 4
mm39_v1_chr1_+_82817388_82817455	0.24209	Foxg1	ENSMUST00000190052.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000063380.11|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000187899.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000186302.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000190046.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr7_-_99344832_99344860	0.213943	Foxg1	ENSMUST00000145381.8|Slco2b1|ENSMUSG00000030737.18|solute carrier organic anion transporter family, member 2b1
mm39_v1_chr7_+_23085312_23085326	0.200187	Foxg1	ENSMUST00000086341.12|Nlrp5|ENSMUSG00000015721.19|NLR family, pyrin domain containing 5	ENSMUST00000015866.14|Nlrp5|ENSMUSG00000015721.19|NLR family, pyrin domain containing 5
mm39_v1_chr15_-_76116245_76116254	0.169199	Foxg1	ENSMUST00000167754.8|Plec|ENSMUSG00000022565.16|plectin
mm39_v1_chr14_+_43156329_43156329	0.150075	Foxg1	ENSMUST00000228117.2|Gm9732|ENSMUSG00000115483.2|predicted gene 9732
mm39_v1_chr2_-_162929732_162929775	0.146905	Foxg1	ENSMUST00000094653.6|Gtsf1l|ENSMUSG00000070708.6|gametocyte specific factor 1-like
mm39_v1_chr2_-_152673032_152673246	0.146723	Foxg1	ENSMUST00000128172.3|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1
mm39_v1_chr1_-_180641430_180641508	0.134334	Foxg1	ENSMUST00000162814.8|H3f3a|ENSMUSG00000060743.13|H3.3 histone A
mm39_v1_chr2_+_88479038_88479038	0.131391	Foxg1	ENSMUST00000120518.4|Olfr1192-ps1|ENSMUSG00000111590.3|olfactory receptor 1192, pseudogene 1
mm39_v1_chr3_-_127019496_127019608	0.0830449	Foxg1	ENSMUST00000182064.9|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain	ENSMUST00000182452.8|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain
mm39_v1_chr1_-_120432477_120432497	0.0636298	Foxg1	ENSMUST00000186432.3|Marco|ENSMUSG00000026390.8|macrophage receptor with collagenous structure
mm39_v1_chr2_+_28403255_28403338	0.0513991	Foxg1	ENSMUST00000028170.15|Ralgds|ENSMUSG00000026821.17|ral guanine nucleotide dissociation stimulator
mm39_v1_chr4_+_141520923_141521046	0.0430324	Foxg1	ENSMUST00000097805.11|Casp9|ENSMUSG00000028914.14|caspase 9	ENSMUST00000030747.11|Casp9|ENSMUSG00000028914.14|caspase 9	ENSMUST00000153094.2|Casp9|ENSMUSG00000028914.14|caspase 9
mm39_v1_chr5_-_121329385_121329501	0.0380056	Foxg1	ENSMUST00000054547.9|Ptpn11|ENSMUSG00000043733.15|protein tyrosine phosphatase, non-receptor type 11	ENSMUST00000100770.9|Ptpn11|ENSMUSG00000043733.15|protein tyrosine phosphatase, non-receptor type 11
mm39_v1_chr14_-_121935829_121935860	0.0205257	Foxg1	ENSMUST00000040700.9|Dock9|ENSMUSG00000025558.20|dedicator of cytokinesis 9	ENSMUST00000212181.2|Dock9|ENSMUSG00000025558.20|dedicator of cytokinesis 9
mm39_v1_chr2_+_121120070_121120087	0.000350695	Foxg1	ENSMUST00000094639.10|Map1a|ENSMUSG00000027254.14|microtubule-associated protein 1 A
