mm39_v1_chr1_+_171052623_171052669	24.4503	Foxp2_Foxp3	ENSMUST00000111321.8|Apoa2|ENSMUSG00000005681.13|apolipoprotein A-II	ENSMUST00000005824.12|Apoa2|ENSMUSG00000005681.13|apolipoprotein A-II	ENSMUST00000111320.8|Apoa2|ENSMUSG00000005681.13|apolipoprotein A-II	ENSMUST00000111319.2|Apoa2|ENSMUSG00000005681.13|apolipoprotein A-II
mm39_v1_chr4_+_104623505_104623592	22.6901	Foxp2_Foxp3	ENSMUST00000031663.10|C8b|ENSMUSG00000029656.14|complement component 8, beta polypeptide	ENSMUST00000065072.7|C8b|ENSMUSG00000029656.14|complement component 8, beta polypeptide
mm39_v1_chr11_+_108286114_108286150	22.0555	Foxp2_Foxp3	ENSMUST00000000049.6|Apoh|ENSMUSG00000000049.12|apolipoprotein H
mm39_v1_chr15_-_78352801_78352843	16.8536	Foxp2_Foxp3	ENSMUST00000229124.2|Tmprss6|ENSMUSG00000016942.7|transmembrane serine protease 6	ENSMUST00000230226.2|Tmprss6|ENSMUSG00000016942.7|transmembrane serine protease 6	ENSMUST00000017086.5|Tmprss6|ENSMUSG00000016942.7|transmembrane serine protease 6
mm39_v1_chr11_+_69945157_69945187	13.9584	Foxp2_Foxp3	ENSMUST00000108585.9|Asgr1|ENSMUSG00000020884.16|asialoglycoprotein receptor 1	ENSMUST00000018699.13|Asgr1|ENSMUSG00000020884.16|asialoglycoprotein receptor 1
mm39_v1_chr11_+_69983459_69983470	13.5582	Foxp2_Foxp3	ENSMUST00000102572.8|Asgr2|ENSMUSG00000040963.16|asialoglycoprotein receptor 2
mm39_v1_chr11_+_69983479_69983526	12.4472	Foxp2_Foxp3	ENSMUST00000143772.8|Asgr2|ENSMUSG00000040963.16|asialoglycoprotein receptor 2
mm39_v1_chr2_-_134396268_134396289	12.2133	Foxp2_Foxp3	ENSMUST00000028704.3|Hao1|ENSMUSG00000027261.3|hydroxyacid oxidase 1, liver
mm39_v1_chr11_+_78389913_78389958	12.1535	Foxp2_Foxp3	ENSMUST00000017488.5|Vtn|ENSMUSG00000017344.5|vitronectin
mm39_v1_chr11_+_69983531_69983576	12.0119	Foxp2_Foxp3	ENSMUST00000124721.2|Asgr2|ENSMUSG00000040963.16|asialoglycoprotein receptor 2
mm39_v1_chr5_+_90608751_90608767	11.8996	Foxp2_Foxp3	ENSMUST00000031314.10|Alb|ENSMUSG00000029368.11|albumin
mm39_v1_chr6_+_121323577_121323630	11.7978	Foxp2_Foxp3	ENSMUST00000032200.16|Slc6a12|ENSMUSG00000030109.16|solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12
mm39_v1_chr5_-_145816774_145816867	11.2587	Foxp2_Foxp3	ENSMUST00000035918.8|Cyp3a11|ENSMUSG00000056035.9|cytochrome P450, family 3, subfamily a, polypeptide 11
mm39_v1_chr19_+_31846154_31846187	11.22	Foxp2_Foxp3	ENSMUST00000224564.2|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor	ENSMUST00000224304.2|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor	ENSMUST00000075838.8|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor	ENSMUST00000224400.2|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor
mm39_v1_chrX_+_100419965_100419984	11.2146	Foxp2_Foxp3	ENSMUST00000119080.8|Gjb1|ENSMUSG00000047797.15|gap junction protein, beta 1
mm39_v1_chr5_+_90708962_90709076	11.0374	Foxp2_Foxp3	ENSMUST00000094615.8|Albfm1|ENSMUSG00000070690.8|albumin superfamily member 1	ENSMUST00000200765.2|Albfm1|ENSMUSG00000070690.8|albumin superfamily member 1
mm39_v1_chr10_+_93324624_93324640	10.9324	Foxp2_Foxp3	ENSMUST00000129421.8|Hal|ENSMUSG00000020017.15|histidine ammonia lyase
mm39_v1_chr19_+_30210320_30210342	10.5338	Foxp2_Foxp3	ENSMUST00000025797.7|Mbl2|ENSMUSG00000024863.7|mannose-binding lectin (protein C) 2
mm39_v1_chr12_-_103871146_103871161	10.3754	Foxp2_Foxp3	ENSMUST00000074051.6|Serpina1c|ENSMUSG00000079015.3|serine (or cysteine) peptidase inhibitor, clade A, member 1C
mm39_v1_chr16_+_22710785_22710802	10.3066	Foxp2_Foxp3	ENSMUST00000023583.7|Ahsg|ENSMUSG00000022868.7|alpha-2-HS-glycoprotein	ENSMUST00000232098.2|Ahsg|ENSMUSG00000022868.7|alpha-2-HS-glycoprotein
mm39_v1_chr8_-_122671588_122671648	10.0465	Foxp2_Foxp3	ENSMUST00000057653.8|Car5a|ENSMUSG00000025317.8|carbonic anhydrase 5a, mitochondrial
mm39_v1_chr9_-_44714263_44714369	9.99594	Foxp2_Foxp3	ENSMUST00000044694.8|Ttc36|ENSMUSG00000039438.8|tetratricopeptide repeat domain 36
mm39_v1_chr12_-_103923145_103923164	9.85493	Foxp2_Foxp3	ENSMUST00000085054.5|Serpina1e|ENSMUSG00000072849.11|serine (or cysteine) peptidase inhibitor, clade A, member 1E
mm39_v1_chr1_-_130589349_130589374	9.73422	Foxp2_Foxp3	ENSMUST00000027657.14|C4bp|ENSMUSG00000026405.15|complement component 4 binding protein
mm39_v1_chr1_-_130589321_130589347	9.65452	Foxp2_Foxp3	ENSMUST00000137276.3|C4bp|ENSMUSG00000026405.15|complement component 4 binding protein
mm39_v1_chr19_-_43974990_43975001	9.47301	Foxp2_Foxp3	ENSMUST00000026210.5|Cpn1|ENSMUSG00000025196.5|carboxypeptidase N, polypeptide 1
mm39_v1_chr6_+_116627567_116627592	9.38604	Foxp2_Foxp3	ENSMUST00000067354.10|Depp1|ENSMUSG00000048489.13|DEPP1 autophagy regulator	ENSMUST00000178241.4|Depp1|ENSMUSG00000048489.13|DEPP1 autophagy regulator
mm39_v1_chr1_-_184543367_184543510	9.30098	Foxp2_Foxp3	ENSMUST00000048462.13|Mtarc1|ENSMUSG00000026621.14|mitochondrial amidoxime reducing component 1	ENSMUST00000110992.9|Mtarc1|ENSMUSG00000026621.14|mitochondrial amidoxime reducing component 1
mm39_v1_chr12_-_103623418_103623471	9.11377	Foxp2_Foxp3	ENSMUST00000044159.7|Serpina6|ENSMUSG00000060807.8|serine (or cysteine) peptidase inhibitor, clade A, member 6
mm39_v1_chr19_-_34856853_34856864	9.10696	Foxp2_Foxp3	ENSMUST00000036584.13|Pank1|ENSMUSG00000033610.17|pantothenate kinase 1
mm39_v1_chr4_-_104733580_104733602	8.99607	Foxp2_Foxp3	ENSMUST00000064873.9|C8a|ENSMUSG00000035031.16|complement component 8, alpha polypeptide	ENSMUST00000106808.10|C8a|ENSMUSG00000035031.16|complement component 8, alpha polypeptide	ENSMUST00000048947.15|C8a|ENSMUSG00000035031.16|complement component 8, alpha polypeptide
mm39_v1_chr2_-_110136074_110136100	8.75296	Foxp2_Foxp3	ENSMUST00000046233.9|Bbox1|ENSMUSG00000041660.9|butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)
mm39_v1_chr12_-_81014849_81014860	8.63899	Foxp2_Foxp3	ENSMUST00000095572.5|Slc10a1|ENSMUSG00000021135.9|solute carrier family 10 (sodium/bile acid cotransporter family), member 1
mm39_v1_chr3_+_146302832_146302920	8.47064	Foxp2_Foxp3	ENSMUST00000029837.14|Uox|ENSMUSG00000028186.15|urate oxidase	ENSMUST00000147409.2|Uox|ENSMUSG00000028186.15|urate oxidase	ENSMUST00000121133.2|Uox|ENSMUSG00000028186.15|urate oxidase
mm39_v1_chr14_-_52150804_52150945	8.39314	Foxp2_Foxp3	ENSMUST00000004673.15|Ndrg2|ENSMUSG00000004558.16|N-myc downstream regulated gene 2	ENSMUST00000111632.5|Ndrg2|ENSMUSG00000004558.16|N-myc downstream regulated gene 2
mm39_v1_chr14_-_52151537_52151615	7.88825	Foxp2_Foxp3	ENSMUST00000227402.2|Ndrg2|ENSMUSG00000004558.16|N-myc downstream regulated gene 2	ENSMUST00000227237.2|Ndrg2|ENSMUSG00000004558.16|N-myc downstream regulated gene 2
mm39_v1_chr9_+_46179899_46179931	7.82881	Foxp2_Foxp3	ENSMUST00000121598.8|Apoa5|ENSMUSG00000032079.13|apolipoprotein A-V
mm39_v1_chr16_+_17149235_17149292	7.72192	Foxp2_Foxp3	ENSMUST00000023450.15|Serpind1|ENSMUSG00000022766.15|serine (or cysteine) peptidase inhibitor, clade D, member 1	ENSMUST00000231884.2|Serpind1|ENSMUSG00000022766.15|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm39_v1_chr7_+_140343652_140343758	7.69264	Foxp2_Foxp3	ENSMUST00000026552.9|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1	ENSMUST00000209253.2|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1	ENSMUST00000210235.2|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1
mm39_v1_chr12_-_81014755_81014806	7.55839	Foxp2_Foxp3	ENSMUST00000218342.2|Slc10a1|ENSMUSG00000021135.9|solute carrier family 10 (sodium/bile acid cotransporter family), member 1
mm39_v1_chr2_+_58645189_58645224	7.52096	Foxp2_Foxp3	ENSMUST00000102755.4|Upp2|ENSMUSG00000026839.18|uridine phosphorylase 2	ENSMUST00000230627.2|Upp2|ENSMUSG00000026839.18|uridine phosphorylase 2	ENSMUST00000229923.2|Upp2|ENSMUSG00000026839.18|uridine phosphorylase 2
mm39_v1_chr15_+_54274151_54274193	7.42472	Foxp2_Foxp3	ENSMUST00000036737.4|Colec10|ENSMUSG00000038591.4|collectin sub-family member 10
mm39_v1_chr1_+_88334678_88334687	7.37258	Foxp2_Foxp3	ENSMUST00000027518.12|Spp2|ENSMUSG00000026295.13|secreted phosphoprotein 2
mm39_v1_chr14_-_52151026_52151035	7.34886	Foxp2_Foxp3	ENSMUST00000228164.2|Ndrg2|ENSMUSG00000004558.16|N-myc downstream regulated gene 2
mm39_v1_chr19_+_29078765_29078776	7.26158	Foxp2_Foxp3	ENSMUST00000064393.6|Rcl1|ENSMUSG00000024785.8|RNA terminal phosphate cyclase-like 1	ENSMUST00000235900.2|Rcl1|ENSMUSG00000024785.8|RNA terminal phosphate cyclase-like 1
mm39_v1_chr5_-_87572060_87572064	7.08062	Foxp2_Foxp3	ENSMUST00000072818.6|Ugt2b38|ENSMUSG00000061906.6|UDP glucuronosyltransferase 2 family, polypeptide B38
mm39_v1_chr10_-_89369432_89369452	6.98657	Foxp2_Foxp3	ENSMUST00000105297.2|Nr1h4|ENSMUSG00000047638.16|nuclear receptor subfamily 1, group H, member 4
mm39_v1_chr5_-_87716882_87716897	6.77142	Foxp2_Foxp3	ENSMUST00000113314.3|Sult1d1|ENSMUSG00000029273.11|sulfotransferase family 1D, member 1
mm39_v1_chr19_-_38113696_38113754	6.71387	Foxp2_Foxp3	ENSMUST00000025951.14|Rbp4|ENSMUSG00000024990.14|retinol binding protein 4, plasma	ENSMUST00000237287.2|Rbp4|ENSMUSG00000024990.14|retinol binding protein 4, plasma
mm39_v1_chr11_+_114741948_114741999	6.7025	Foxp2_Foxp3	ENSMUST00000133245.2|Gprc5c|ENSMUSG00000051043.17|G protein-coupled receptor, family C, group 5, member C	ENSMUST00000122967.3|Gprc5c|ENSMUSG00000051043.17|G protein-coupled receptor, family C, group 5, member C
mm39_v1_chr5_-_87402659_87402677	6.69477	Foxp2_Foxp3	ENSMUST00000075858.4|Ugt2b37|ENSMUSG00000057425.4|UDP glucuronosyltransferase 2 family, polypeptide B37
mm39_v1_chr14_-_66246652_66246684	6.68614	Foxp2_Foxp3	ENSMUST00000059970.9|Gulo|ENSMUSG00000034450.9|gulonolactone (L-) oxidase
mm39_v1_chr15_-_96947963_96947977	6.55015	Foxp2_Foxp3	ENSMUST00000230907.2|Slc38a4|ENSMUSG00000022464.15|solute carrier family 38, member 4
mm39_v1_chr6_+_116627635_116627657	6.32821	Foxp2_Foxp3	ENSMUST00000204555.2|Depp1|ENSMUSG00000048489.13|DEPP1 autophagy regulator
mm39_v1_chr2_+_58644922_58644954	6.27439	Foxp2_Foxp3	ENSMUST00000059102.13|Upp2|ENSMUSG00000026839.18|uridine phosphorylase 2
mm39_v1_chr4_-_19922599_19922614	6.21915	Foxp2_Foxp3	ENSMUST00000029900.6|Atp6v0d2|ENSMUSG00000028238.7|ATPase, H+ transporting, lysosomal V0 subunit D2
mm39_v1_chr5_-_145406533_145406533	6.00083	Foxp2_Foxp3	ENSMUST00000031633.5|Cyp3a16|ENSMUSG00000038656.6|cytochrome P450, family 3, subfamily a, polypeptide 16
mm39_v1_chr18_-_32271224_32271252	5.96216	Foxp2_Foxp3	ENSMUST00000234657.2|Proc|ENSMUSG00000024386.10|protein C	ENSMUST00000234386.2|Proc|ENSMUSG00000024386.10|protein C	ENSMUST00000234651.2|Proc|ENSMUSG00000024386.10|protein C
mm39_v1_chr11_+_70104929_70104959	5.79383	Foxp2_Foxp3	ENSMUST00000094055.10|Slc16a11|ENSMUSG00000040938.17|solute carrier family 16 (monocarboxylic acid transporters), member 11	ENSMUST00000126296.8|Slc16a11|ENSMUSG00000040938.17|solute carrier family 16 (monocarboxylic acid transporters), member 11	ENSMUST00000136328.2|Slc16a11|ENSMUSG00000040938.17|solute carrier family 16 (monocarboxylic acid transporters), member 11	ENSMUST00000153993.3|Slc16a11|ENSMUSG00000040938.17|solute carrier family 16 (monocarboxylic acid transporters), member 11
mm39_v1_chr14_+_33662976_33663011	5.73934	Foxp2_Foxp3	ENSMUST00000100720.2|Gdf2|ENSMUSG00000072625.2|growth differentiation factor 2
mm39_v1_chr4_-_49549489_49549546	5.70153	Foxp2_Foxp3	ENSMUST00000029987.10|Aldob|ENSMUSG00000028307.10|aldolase B, fructose-bisphosphate
mm39_v1_chr15_-_39720855_39720872	5.55816	Foxp2_Foxp3	ENSMUST00000022915.11|Dpys|ENSMUSG00000022304.14|dihydropyrimidinase	ENSMUST00000110306.9|Dpys|ENSMUSG00000022304.14|dihydropyrimidinase
mm39_v1_chr1_+_172525613_172525630	5.54096	Foxp2_Foxp3	ENSMUST00000038495.5|Crp|ENSMUSG00000037942.6|C-reactive protein, pentraxin-related
mm39_v1_chr15_+_3300249_3300488	5.42955	Foxp2_Foxp3	ENSMUST00000082424.12|Selenop|ENSMUSG00000064373.14|selenoprotein P	ENSMUST00000159158.9|Selenop|ENSMUSG00000064373.14|selenoprotein P	ENSMUST00000159216.10|Selenop|ENSMUSG00000064373.14|selenoprotein P	ENSMUST00000160311.3|Selenop|ENSMUSG00000064373.14|selenoprotein P
mm39_v1_chr11_-_53313950_53313997	5.27782	Foxp2_Foxp3	ENSMUST00000036045.6|Leap2|ENSMUSG00000036216.6|liver-expressed antimicrobial peptide 2
mm39_v1_chr15_-_96918203_96918216	5.2468	Foxp2_Foxp3	ENSMUST00000166223.2|Slc38a4|ENSMUSG00000022464.15|solute carrier family 38, member 4
mm39_v1_chr14_-_31362835_31362907	5.15409	Foxp2_Foxp3	ENSMUST00000167066.8|Hacl1|ENSMUSG00000021884.19|2-hydroxyacyl-CoA lyase 1	ENSMUST00000127204.9|Hacl1|ENSMUSG00000021884.19|2-hydroxyacyl-CoA lyase 1
mm39_v1_chr6_+_87405968_87405982	5.1349	Foxp2_Foxp3	ENSMUST00000032125.7|Bmp10|ENSMUSG00000030046.7|bone morphogenetic protein 10
mm39_v1_chr9_+_46139878_46140019	5.06602	Foxp2_Foxp3	ENSMUST00000034588.9|Apoa1|ENSMUSG00000032083.9|apolipoprotein A-I	ENSMUST00000132155.2|Apoa1|ENSMUSG00000032083.9|apolipoprotein A-I
mm39_v1_chr15_-_96917804_96917853	4.99569	Foxp2_Foxp3	ENSMUST00000231039.2|Slc38a4|ENSMUSG00000022464.15|solute carrier family 38, member 4
mm39_v1_chr9_-_103107460_103107478	4.87235	Foxp2_Foxp3	ENSMUST00000165296.8|Trf|ENSMUSG00000032554.16|transferrin	ENSMUST00000112645.8|Trf|ENSMUSG00000032554.16|transferrin
mm39_v1_chr17_+_25097199_25097239	4.84796	Foxp2_Foxp3	ENSMUST00000050714.8|Igfals|ENSMUSG00000046070.10|insulin-like growth factor binding protein, acid labile subunit
mm39_v1_chr6_-_83633064_83633169	4.80522	Foxp2_Foxp3	ENSMUST00000014686.3|Clec4f|ENSMUSG00000014542.4|C-type lectin domain family 4, member f
mm39_v1_chr1_-_180023518_180023640	4.76567	Foxp2_Foxp3	ENSMUST00000162769.8|Coq8a|ENSMUSG00000026489.14|coenzyme Q8A	ENSMUST00000161379.2|Coq8a|ENSMUSG00000026489.14|coenzyme Q8A	ENSMUST00000027766.13|Coq8a|ENSMUSG00000026489.14|coenzyme Q8A	ENSMUST00000161814.8|Coq8a|ENSMUSG00000026489.14|coenzyme Q8A
mm39_v1_chr9_-_103107495_103107643	4.68896	Foxp2_Foxp3	ENSMUST00000035158.16|Trf|ENSMUSG00000032554.16|transferrin
mm39_v1_chr6_-_23132977_23132991	4.68031	Foxp2_Foxp3	ENSMUST00000031707.14|Aass|ENSMUSG00000029695.14|aminoadipate-semialdehyde synthase
mm39_v1_chrX_+_100420873_100420887	4.67157	Foxp2_Foxp3	ENSMUST00000052130.14|Gjb1|ENSMUSG00000047797.15|gap junction protein, beta 1
mm39_v1_chr1_+_67162176_67162196	4.64954	Foxp2_Foxp3	ENSMUST00000027144.8|Cps1|ENSMUSG00000025991.9|carbamoyl-phosphate synthetase 1
mm39_v1_chr4_+_144619696_144619716	4.64365	Foxp2_Foxp3	ENSMUST00000142808.8|Dhrs3|ENSMUSG00000066026.15|dehydrogenase/reductase (SDR family) member 3
mm39_v1_chr15_+_99291100_99291151	4.6105	Foxp2_Foxp3	ENSMUST00000159209.8|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6
mm39_v1_chr1_-_180023467_180023511	4.57502	Foxp2_Foxp3	ENSMUST00000161746.2|Coq8a|ENSMUSG00000026489.14|coenzyme Q8A	ENSMUST00000160879.7|Coq8a|ENSMUSG00000026489.14|coenzyme Q8A
mm39_v1_chr4_+_138181616_138181643	4.49502	Foxp2_Foxp3	ENSMUST00000050918.4|Camk2n1|ENSMUSG00000046447.4|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm39_v1_chr10_+_87695352_87695473	4.48704	Foxp2_Foxp3	ENSMUST00000121952.8|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1	ENSMUST00000126490.8|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1
mm39_v1_chr1_+_9618173_9618326	4.41504	Foxp2_Foxp3	ENSMUST00000144177.8|Adhfe1|ENSMUSG00000025911.15|alcohol dehydrogenase, iron containing, 1
mm39_v1_chr12_+_8062331_8062359	4.39763	Foxp2_Foxp3	ENSMUST00000171239.2|Apob|ENSMUSG00000020609.15|apolipoprotein B
mm39_v1_chr3_+_107137924_107137933	4.34884	Foxp2_Foxp3	ENSMUST00000179399.3|A630076J17Rik|ENSMUSG00000094613.3|RIKEN cDNA A630076J17 gene
mm39_v1_chr14_-_31362909_31362928	4.2613	Foxp2_Foxp3	ENSMUST00000022437.16|Hacl1|ENSMUSG00000021884.19|2-hydroxyacyl-CoA lyase 1
mm39_v1_chr15_-_96929086_96929102	4.25425	Foxp2_Foxp3	ENSMUST00000230086.2|Slc38a4|ENSMUSG00000022464.15|solute carrier family 38, member 4
mm39_v1_chr15_+_99290832_99290903	4.24857	Foxp2_Foxp3	ENSMUST00000160635.8|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6	ENSMUST00000161250.8|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6	ENSMUST00000229392.2|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6	ENSMUST00000161778.8|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6
mm39_v1_chr10_-_86843878_86843894	4.17861	Foxp2_Foxp3	ENSMUST00000035288.17|Stab2|ENSMUSG00000035459.19|stabilin 2
mm39_v1_chr14_+_55797934_55797990	4.17396	Foxp2_Foxp3	ENSMUST00000121622.8|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11	ENSMUST00000143431.2|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11	ENSMUST00000150481.8|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11
mm39_v1_chr5_+_139375540_139375675	4.16441	Foxp2_Foxp3	ENSMUST00000100514.3|Gpr146|ENSMUSG00000044197.9|G protein-coupled receptor 146
mm39_v1_chr4_+_144619397_144619432	4.15785	Foxp2_Foxp3	ENSMUST00000105744.8|Dhrs3|ENSMUSG00000066026.15|dehydrogenase/reductase (SDR family) member 3	ENSMUST00000171001.8|Dhrs3|ENSMUSG00000066026.15|dehydrogenase/reductase (SDR family) member 3
mm39_v1_chr4_-_6275629_6275634	4.14966	Foxp2_Foxp3	ENSMUST00000029905.2|Cyp7a1|ENSMUSG00000028240.3|cytochrome P450, family 7, subfamily a, polypeptide 1
mm39_v1_chr17_-_12894716_12894731	4.11325	Foxp2_Foxp3	ENSMUST00000024596.10|Slc22a1|ENSMUSG00000023829.10|solute carrier family 22 (organic cation transporter), member 1
mm39_v1_chr19_+_46611826_46611890	4.05418	Foxp2_Foxp3	ENSMUST00000111855.5|Wbp1l|ENSMUSG00000047731.18|WW domain binding protein 1 like
mm39_v1_chr11_+_70104736_70104770	4.04937	Foxp2_Foxp3	ENSMUST00000171032.8|Slc16a11|ENSMUSG00000040938.17|solute carrier family 16 (monocarboxylic acid transporters), member 11
mm39_v1_chr19_-_58443830_58443889	4.01078	Foxp2_Foxp3	ENSMUST00000026076.14|Gfra1|ENSMUSG00000025089.16|glial cell line derived neurotrophic factor family receptor alpha 1
mm39_v1_chr4_+_144619647_144619673	4.01069	Foxp2_Foxp3	ENSMUST00000154208.8|Dhrs3|ENSMUSG00000066026.15|dehydrogenase/reductase (SDR family) member 3
mm39_v1_chr12_-_84497718_84497792	3.99557	Foxp2_Foxp3	ENSMUST00000085192.7|Aldh6a1|ENSMUSG00000021238.12|aldehyde dehydrogenase family 6, subfamily A1	ENSMUST00000220491.2|Aldh6a1|ENSMUSG00000021238.12|aldehyde dehydrogenase family 6, subfamily A1
mm39_v1_chr17_+_25059079_25059117	3.991	Foxp2_Foxp3	ENSMUST00000164251.8|Hagh|ENSMUSG00000024158.18|hydroxyacyl glutathione hydrolase
mm39_v1_chr14_+_55798362_55798432	3.9878	Foxp2_Foxp3	ENSMUST00000072530.11|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11	ENSMUST00000128490.9|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11
mm39_v1_chr3_-_102871440_102871453	3.98418	Foxp2_Foxp3	ENSMUST00000058899.13|Nr1h5|ENSMUSG00000048938.13|nuclear receptor subfamily 1, group H, member 5
mm39_v1_chr19_-_58443593_58443756	3.95932	Foxp2_Foxp3	ENSMUST00000135730.2|Gfra1|ENSMUSG00000025089.16|glial cell line derived neurotrophic factor family receptor alpha 1	ENSMUST00000152507.8|Gfra1|ENSMUSG00000025089.16|glial cell line derived neurotrophic factor family receptor alpha 1
mm39_v1_chr8_-_45715049_45715095	3.85462	Foxp2_Foxp3	ENSMUST00000034064.5|F11|ENSMUSG00000031645.5|coagulation factor XI
mm39_v1_chr6_+_134807170_134807241	3.82713	Foxp2_Foxp3	ENSMUST00000111937.2|Crebl2|ENSMUSG00000032652.14|cAMP responsive element binding protein-like 2
mm39_v1_chr19_-_34855278_34855323	3.76752	Foxp2_Foxp3	ENSMUST00000112460.3|Pank1|ENSMUSG00000033610.17|pantothenate kinase 1
mm39_v1_chrX_+_138701544_138701577	3.76654	Foxp2_Foxp3	ENSMUST00000054889.4|Cldn2|ENSMUSG00000047230.7|claudin 2
mm39_v1_chr18_+_36797113_36797177	3.76104	Foxp2_Foxp3	ENSMUST00000036765.8|Eif4ebp3|ENSMUSG00000090264.2|eukaryotic translation initiation factor 4E binding protein 3
mm39_v1_chr7_-_80052491_80052510	3.74129	Foxp2_Foxp3	ENSMUST00000122232.8|Furin|ENSMUSG00000030530.16|furin (paired basic amino acid cleaving enzyme)
mm39_v1_chr5_-_147259245_147259259	3.64431	Foxp2_Foxp3	ENSMUST00000100433.5|Urad|ENSMUSG00000075543.5|ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase
mm39_v1_chr10_-_25412010_25412165	3.60794	Foxp2_Foxp3	ENSMUST00000179685.3|Smlr1|ENSMUSG00000096546.3|small leucine-rich protein 1
mm39_v1_chr3_+_20011201_20011237	3.56405	Foxp2_Foxp3	ENSMUST00000091309.12|Cp|ENSMUSG00000003617.17|ceruloplasmin	ENSMUST00000108329.8|Cp|ENSMUSG00000003617.17|ceruloplasmin	ENSMUST00000003714.13|Cp|ENSMUSG00000003617.17|ceruloplasmin
mm39_v1_chr4_+_133280680_133280702	3.52148	Foxp2_Foxp3	ENSMUST00000042706.3|Nr0b2|ENSMUSG00000037583.3|nuclear receptor subfamily 0, group B, member 2
mm39_v1_chr7_+_141056305_141056315	3.47088	Foxp2_Foxp3	ENSMUST00000117634.2|Tspan4|ENSMUSG00000025511.16|tetraspanin 4
mm39_v1_chr11_+_114742619_114742706	3.46606	Foxp2_Foxp3	ENSMUST00000053361.12|Gprc5c|ENSMUSG00000051043.17|G protein-coupled receptor, family C, group 5, member C	ENSMUST00000021071.14|Gprc5c|ENSMUSG00000051043.17|G protein-coupled receptor, family C, group 5, member C	ENSMUST00000136785.2|Gprc5c|ENSMUSG00000051043.17|G protein-coupled receptor, family C, group 5, member C
mm39_v1_chr7_+_100966289_100966339	3.46092	Foxp2_Foxp3	ENSMUST00000163799.9|Stard10|ENSMUSG00000030688.16|START domain containing 10	ENSMUST00000164479.9|Stard10|ENSMUSG00000030688.16|START domain containing 10
mm39_v1_chr10_+_127734384_127734401	3.45488	Foxp2_Foxp3	ENSMUST00000047134.8|Sdr9c7|ENSMUSG00000040127.14|4short chain dehydrogenase/reductase family 9C, member 7
mm39_v1_chr6_+_134807097_134807146	3.37601	Foxp2_Foxp3	ENSMUST00000046303.12|Crebl2|ENSMUSG00000032652.14|cAMP responsive element binding protein-like 2
mm39_v1_chr14_+_55798517_55798528	3.34731	Foxp2_Foxp3	ENSMUST00000117701.8|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11
mm39_v1_chr19_-_34855242_34855261	3.32801	Foxp2_Foxp3	ENSMUST00000238065.2|Pank1|ENSMUSG00000033610.17|pantothenate kinase 1
mm39_v1_chrX_-_7547273_7547328	3.29107	Foxp2_Foxp3	ENSMUST00000115695.4|Magix|ENSMUSG00000031147.9|MAGI family member, X-linked
mm39_v1_chr4_+_148686985_148687041	3.25372	Foxp2_Foxp3	ENSMUST00000105701.9|Masp2|ENSMUSG00000028979.18|mannan-binding lectin serine peptidase 2	ENSMUST00000052060.7|Masp2|ENSMUSG00000028979.18|mannan-binding lectin serine peptidase 2
mm39_v1_chr3_+_20011251_20011296	3.17144	Foxp2_Foxp3	ENSMUST00000108328.8|Cp|ENSMUSG00000003617.17|ceruloplasmin
mm39_v1_chr3_+_20011405_20011448	3.16355	Foxp2_Foxp3	ENSMUST00000108325.9|Cp|ENSMUSG00000003617.17|ceruloplasmin
mm39_v1_chr15_+_102875229_102875248	3.11602	Foxp2_Foxp3	ENSMUST00000001699.8|Hoxc10|ENSMUSG00000022484.8|homeobox C10
mm39_v1_chr6_-_52617288_52617374	3.06981	Foxp2_Foxp3	ENSMUST00000031788.9|Hibadh|ENSMUSG00000029776.12|3-hydroxyisobutyrate dehydrogenase
mm39_v1_chr9_+_110162470_110162704	3.05864	Foxp2_Foxp3	ENSMUST00000198761.5|Scap|ENSMUSG00000032485.15|SREBF chaperone	ENSMUST00000197630.3|Scap|ENSMUSG00000032485.15|SREBF chaperone
mm39_v1_chr9_+_44951075_44951097	3.04805	Foxp2_Foxp3	ENSMUST00000217097.2|Mpzl2|ENSMUSG00000032092.6|myelin protein zero-like 2
mm39_v1_chr16_-_92196954_92196971	3.02051	Foxp2_Foxp3	ENSMUST00000023672.10|Rcan1|ENSMUSG00000022951.17|regulator of calcineurin 1
mm39_v1_chr13_+_81034214_81034320	3.01099	Foxp2_Foxp3	ENSMUST00000161441.2|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr10_+_87696339_87696468	3.0021	Foxp2_Foxp3	ENSMUST00000121161.8|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1
mm39_v1_chr7_+_127400016_127400113	2.98967	Foxp2_Foxp3	ENSMUST00000106271.2|Hsd3b7|ENSMUSG00000042289.12|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	ENSMUST00000138432.2|Hsd3b7|ENSMUSG00000042289.12|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm39_v1_chr6_-_71417607_71417630	2.91867	Foxp2_Foxp3	ENSMUST00000002292.15|Rmnd5a|ENSMUSG00000002222.15|required for meiotic nuclear division 5 homolog A
mm39_v1_chrX_-_137985960_137985974	2.90038	Foxp2_Foxp3	ENSMUST00000033626.15|Serpina7|ENSMUSG00000031271.15|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	ENSMUST00000060824.4|Serpina7|ENSMUSG00000031271.15|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
mm39_v1_chr10_-_67972401_67972469	2.89261	Foxp2_Foxp3	ENSMUST00000218532.2|Arid5b|ENSMUSG00000019947.11|AT rich interactive domain 5B (MRF1-like)
mm39_v1_chr10_+_52267702_52267706	2.86544	Foxp2_Foxp3	ENSMUST00000067085.7|Nepn|ENSMUSG00000038624.14|nephrocan
mm39_v1_chr5_-_87054796_87054815	2.86454	Foxp2_Foxp3	ENSMUST00000031181.16|Ugt2b34|ENSMUSG00000029260.16|UDP glucuronosyltransferase 2 family, polypeptide B34	ENSMUST00000113333.2|Ugt2b34|ENSMUSG00000029260.16|UDP glucuronosyltransferase 2 family, polypeptide B34
mm39_v1_chr4_+_34893772_34893788	2.85385	Foxp2_Foxp3	ENSMUST00000029975.10|Cga|ENSMUSG00000028298.11|glycoprotein hormones, alpha subunit	ENSMUST00000135871.8|Cga|ENSMUSG00000028298.11|glycoprotein hormones, alpha subunit	ENSMUST00000108130.2|Cga|ENSMUSG00000028298.11|glycoprotein hormones, alpha subunit
mm39_v1_chr3_+_137923521_137923538	2.8243	Foxp2_Foxp3	ENSMUST00000090171.7|Adh7|ENSMUSG00000055301.9|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
mm39_v1_chr3_-_146302343_146302367	2.80683	Foxp2_Foxp3	ENSMUST00000029836.9|Dnase2b|ENSMUSG00000028185.13|deoxyribonuclease II beta
mm39_v1_chr12_-_83643964_83644020	2.77265	Foxp2_Foxp3	ENSMUST00000048319.6|Zfyve1|ENSMUSG00000042628.9|zinc finger, FYVE domain containing 1
mm39_v1_chr2_+_67948057_67948057	2.75086	Foxp2_Foxp3	ENSMUST00000112346.3|B3galt1|ENSMUSG00000034780.7|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm39_v1_chr18_+_51250748_51250822	2.71419	Foxp2_Foxp3	ENSMUST00000116639.4|Prr16|ENSMUSG00000073565.6|proline rich 16
mm39_v1_chr18_-_66155651_66155671	2.68697	Foxp2_Foxp3	ENSMUST00000143990.2|Lman1|ENSMUSG00000041891.17|lectin, mannose-binding, 1
mm39_v1_chr12_-_16696958_16696977	2.67847	Foxp2_Foxp3	ENSMUST00000238839.2|Lpin1|ENSMUSG00000020593.17|lipin 1
mm39_v1_chr12_-_69771604_69771659	2.67664	Foxp2_Foxp3	ENSMUST00000021370.10|L2hgdh|ENSMUSG00000020988.10|L-2-hydroxyglutarate dehydrogenase
mm39_v1_chr19_-_46661321_46661413	2.63989	Foxp2_Foxp3	ENSMUST00000026012.8|Cyp17a1|ENSMUSG00000003555.9|cytochrome P450, family 17, subfamily a, polypeptide 1
mm39_v1_chr11_+_118913788_118913932	2.60853	Foxp2_Foxp3	ENSMUST00000026662.8|Cbx2|ENSMUSG00000025577.8|chromobox 2
mm39_v1_chr14_+_65595838_65595991	2.59331	Foxp2_Foxp3	ENSMUST00000224623.2|Zfp395|ENSMUSG00000034522.11|zinc finger protein 395
mm39_v1_chr11_-_43727071_43727159	2.56632	Foxp2_Foxp3	ENSMUST00000167574.2|Adra1b|ENSMUSG00000050541.15|adrenergic receptor, alpha 1b
mm39_v1_chr12_+_76353835_76353850	2.53672	Foxp2_Foxp3	ENSMUST00000220321.2|Mthfd1|ENSMUSG00000021048.8|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
mm39_v1_chr2_-_91025492_91025534	2.52199	Foxp2_Foxp3	ENSMUST00000111354.2|Nr1h3|ENSMUSG00000002108.11|nuclear receptor subfamily 1, group H, member 3
mm39_v1_chr11_+_114742331_114742380	2.51522	Foxp2_Foxp3	ENSMUST00000177952.8|Gprc5c|ENSMUSG00000051043.17|G protein-coupled receptor, family C, group 5, member C
mm39_v1_chr8_-_33374282_33374329	2.5071	Foxp2_Foxp3	ENSMUST00000209107.4|Nrg1|ENSMUSG00000062991.10|neuregulin 1	ENSMUST00000209022.3|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chr18_-_39051695_39051824	2.50271	Foxp2_Foxp3	ENSMUST00000040647.11|Fgf1|ENSMUSG00000036585.17|fibroblast growth factor 1
mm39_v1_chr15_+_8997480_8997495	2.49855	Foxp2_Foxp3	ENSMUST00000227191.3|Ranbp3l|ENSMUSG00000048424.19|RAN binding protein 3-like
mm39_v1_chr5_+_65505657_65505689	2.49809	Foxp2_Foxp3	ENSMUST00000031096.11|Klb|ENSMUSG00000029195.11|klotho beta
mm39_v1_chr12_-_103623354_103623371	2.49657	Foxp2_Foxp3	ENSMUST00000152517.2|Serpina6|ENSMUSG00000060807.8|serine (or cysteine) peptidase inhibitor, clade A, member 6
mm39_v1_chr12_-_83643883_83643895	2.49388	Foxp2_Foxp3	ENSMUST00000221919.2|Zfyve1|ENSMUSG00000042628.9|zinc finger, FYVE domain containing 1
mm39_v1_chr2_-_64806106_64806147	2.48194	Foxp2_Foxp3	ENSMUST00000156765.2|Grb14|ENSMUSG00000026888.15|growth factor receptor bound protein 14
mm39_v1_chr5_+_28370687_28370720	2.47793	Foxp2_Foxp3	ENSMUST00000036177.9|En2|ENSMUSG00000039095.9|engrailed 2
mm39_v1_chr10_-_95678786_95678808	2.47625	Foxp2_Foxp3	ENSMUST00000211096.2|Gm33543|ENSMUSG00000110353.2|predicted gene, 33543
mm39_v1_chr10_+_87695886_87695985	2.47341	Foxp2_Foxp3	ENSMUST00000062862.13|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1
mm39_v1_chr19_-_46661501_46661611	2.44814	Foxp2_Foxp3	ENSMUST00000236174.2|Cyp17a1|ENSMUSG00000003555.9|cytochrome P450, family 17, subfamily a, polypeptide 1
mm39_v1_chr10_+_85763545_85763545	2.42805	Foxp2_Foxp3	ENSMUST00000170396.3|Ascl4|ENSMUSG00000085111.4|achaete-scute family bHLH transcription factor 4
mm39_v1_chr3_+_5283577_5283604	2.41979	Foxp2_Foxp3	ENSMUST00000175866.8|Zfhx4|ENSMUSG00000025255.19|zinc finger homeodomain 4
mm39_v1_chr5_-_45607463_45607481	2.3941	Foxp2_Foxp3	ENSMUST00000197946.5|Qdpr|ENSMUSG00000015806.13|quinoid dihydropteridine reductase	ENSMUST00000127562.3|Qdpr|ENSMUSG00000015806.13|quinoid dihydropteridine reductase
mm39_v1_chr17_-_34846323_34846499	2.37707	Foxp2_Foxp3	ENSMUST00000168709.3|Gm20460|ENSMUSG00000092176.2|predicted gene 20460	ENSMUST00000064953.15|Ppt2|ENSMUSG00000015474.17|palmitoyl-protein thioesterase 2	ENSMUST00000170345.8|Ppt2|ENSMUSG00000015474.17|palmitoyl-protein thioesterase 2	ENSMUST00000171121.9|Ppt2|ENSMUSG00000015474.17|palmitoyl-protein thioesterase 2	ENSMUST00000168391.9|Ppt2|ENSMUSG00000015474.17|palmitoyl-protein thioesterase 2	ENSMUST00000169067.9|Ppt2|ENSMUSG00000015474.17|palmitoyl-protein thioesterase 2
mm39_v1_chr9_+_44309727_44309771	2.34165	Foxp2_Foxp3	ENSMUST00000213268.2|Slc37a4|ENSMUSG00000032114.10|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm39_v1_chr3_+_5283606_5283621	2.2892	Foxp2_Foxp3	ENSMUST00000026284.13|Zfhx4|ENSMUSG00000025255.19|zinc finger homeodomain 4
mm39_v1_chr18_-_60881679_60881768	2.26065	Foxp2_Foxp3	ENSMUST00000237783.2|Ndst1|ENSMUSG00000054008.10|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm39_v1_chr9_+_53212871_53212970	2.25978	Foxp2_Foxp3	ENSMUST00000051014.2|Exph5|ENSMUSG00000034584.4|exophilin 5
mm39_v1_chr11_+_114743044_114743145	2.24696	Foxp2_Foxp3	ENSMUST00000142262.2|Gprc5c|ENSMUSG00000051043.17|G protein-coupled receptor, family C, group 5, member C
mm39_v1_chr3_+_85946145_85946198	2.22808	Foxp2_Foxp3	ENSMUST00000238331.2|Sh3d19|ENSMUSG00000028082.15|SH3 domain protein D19
mm39_v1_chr2_+_4722956_4723017	2.21327	Foxp2_Foxp3	ENSMUST00000056914.7|Bend7|ENSMUSG00000048186.15|BEN domain containing 7
mm39_v1_chr3_+_94269745_94269745	2.20655	Foxp2_Foxp3	ENSMUST00000169433.3|C2cd4d|ENSMUSG00000091648.3|C2 calcium-dependent domain containing 4D
mm39_v1_chr14_+_48358267_48358285	2.17975	Foxp2_Foxp3	ENSMUST00000073150.6|Peli2|ENSMUSG00000021846.10|pellino 2
mm39_v1_chrX_+_7588505_7588601	2.15267	Foxp2_Foxp3	ENSMUST00000207675.2|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000116633.9|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000208996.2|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000144148.4|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000125991.9|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000148624.8|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45
mm39_v1_chr15_+_54434576_54434596	2.13807	Foxp2_Foxp3	ENSMUST00000025356.4|Mal2|ENSMUSG00000024479.4|mal, T cell differentiation protein 2
mm39_v1_chr8_-_49008305_49008348	2.13356	Foxp2_Foxp3	ENSMUST00000110346.9|Tenm3|ENSMUSG00000031561.17|teneurin transmembrane protein 3	ENSMUST00000211976.2|Tenm3|ENSMUSG00000031561.17|teneurin transmembrane protein 3
mm39_v1_chr10_-_95678748_95678758	2.13103	Foxp2_Foxp3	ENSMUST00000210336.2|Gm33543|ENSMUSG00000110353.2|predicted gene, 33543
mm39_v1_chr1_-_179373826_179373842	2.11928	Foxp2_Foxp3	ENSMUST00000027769.6|Tfb2m|ENSMUSG00000026492.12|transcription factor B2, mitochondrial
mm39_v1_chr19_-_58444336_58444346	2.10278	Foxp2_Foxp3	ENSMUST00000131877.2|Gfra1|ENSMUSG00000025089.16|glial cell line derived neurotrophic factor family receptor alpha 1
mm39_v1_chr4_+_134042423_134042437	2.09478	Foxp2_Foxp3	ENSMUST00000105875.8|Trim63|ENSMUSG00000028834.14|tripartite motif-containing 63	ENSMUST00000030638.7|Trim63|ENSMUSG00000028834.14|tripartite motif-containing 63
mm39_v1_chr8_+_46080746_46080791	2.08491	Foxp2_Foxp3	ENSMUST00000145458.9|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000134321.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr9_-_45866468_45866484	2.07339	Foxp2_Foxp3	ENSMUST00000162072.8|Sidt2|ENSMUSG00000034908.17|SID1 transmembrane family, member 2
mm39_v1_chr6_+_53550349_53550379	2.0599	Foxp2_Foxp3	ENSMUST00000203641.2|Creb5|ENSMUSG00000053007.10|cAMP responsive element binding protein 5
mm39_v1_chr17_-_34846122_34846166	2.04619	Foxp2_Foxp3	ENSMUST00000171376.8|Ppt2|ENSMUSG00000015474.17|palmitoyl-protein thioesterase 2	ENSMUST00000169287.2|Ppt2|ENSMUSG00000015474.17|palmitoyl-protein thioesterase 2
mm39_v1_chr15_+_9071655_9071713	2.03839	Foxp2_Foxp3	ENSMUST00000227682.3|Nadk2|ENSMUSG00000022253.18|NAD kinase 2, mitochondrial
mm39_v1_chrX_+_7588453_7588496	2.03642	Foxp2_Foxp3	ENSMUST00000043045.10|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000207386.2|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000116634.9|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000208072.2|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000207589.2|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000208618.2|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000208443.2|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000207541.2|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000208528.2|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000208156.2|Gm45208|ENSMUSG00000109493.2|predicted gene 45208	ENSMUST00000115689.10|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000131077.9|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45	ENSMUST00000115688.8|Wdr45|ENSMUSG00000039382.13|WD repeat domain 45
mm39_v1_chr5_-_115109118_115109138	2.02122	Foxp2_Foxp3	ENSMUST00000031535.12|Hnf1a|ENSMUSG00000029556.13|HNF1 homeobox A
mm39_v1_chr15_+_9071331_9071361	1.99758	Foxp2_Foxp3	ENSMUST00000190591.10|Nadk2|ENSMUSG00000022253.18|NAD kinase 2, mitochondrial
mm39_v1_chr1_-_138547403_138547497	1.98591	Foxp2_Foxp3	ENSMUST00000027642.5|Nek7|ENSMUSG00000026393.11|NIMA (never in mitosis gene a)-related expressed kinase 7	ENSMUST00000186017.7|Nek7|ENSMUSG00000026393.11|NIMA (never in mitosis gene a)-related expressed kinase 7
mm39_v1_chr8_-_46747629_46747708	1.97843	Foxp2_Foxp3	ENSMUST00000058636.9|Helt|ENSMUSG00000047171.9|helt bHLH transcription factor
mm39_v1_chr17_+_71511642_71511688	1.9753	Foxp2_Foxp3	ENSMUST00000126681.8|Lpin2|ENSMUSG00000024052.18|lipin 2
mm39_v1_chr15_+_99290763_99290785	1.96856	Foxp2_Foxp3	ENSMUST00000023749.15|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6
mm39_v1_chr2_+_38401826_38401896	1.90193	Foxp2_Foxp3	ENSMUST00000112895.8|Nek6|ENSMUSG00000026749.12|NIMA (never in mitosis gene a)-related expressed kinase 6
mm39_v1_chr8_+_46080840_46080866	1.89259	Foxp2_Foxp3	ENSMUST00000135336.9|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr15_-_53209513_53209565	1.86025	Foxp2_Foxp3	ENSMUST00000077273.9|Ext1|ENSMUSG00000061731.10|exostosin glycosyltransferase 1
mm39_v1_chr11_-_86698484_86698572	1.85871	Foxp2_Foxp3	ENSMUST00000018569.14|Dhx40|ENSMUSG00000018425.19|DEAH (Asp-Glu-Ala-His) box polypeptide 40
mm39_v1_chr9_+_119231140_119231335	1.85709	Foxp2_Foxp3	ENSMUST00000165044.3|Acvr2b|ENSMUSG00000061393.15|activin receptor IIB
mm39_v1_chr4_-_35845204_35845204	1.82889	Foxp2_Foxp3	ENSMUST00000164772.8|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2	ENSMUST00000065173.9|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2
mm39_v1_chr1_-_162726053_162726062	1.8263	Foxp2_Foxp3	ENSMUST00000143123.3|Fmo2|ENSMUSG00000040170.14|flavin containing monooxygenase 2
mm39_v1_chr12_+_72807985_72808090	1.82626	Foxp2_Foxp3	ENSMUST00000021514.10|Ppm1a|ENSMUSG00000021096.12|protein phosphatase 1A, magnesium dependent, alpha isoform
mm39_v1_chr10_+_116111441_116111481	1.80552	Foxp2_Foxp3	ENSMUST00000218553.2|Ptprb|ENSMUSG00000020154.11|protein tyrosine phosphatase, receptor type, B
mm39_v1_chr2_-_84652890_84652996	1.79524	Foxp2_Foxp3	ENSMUST00000028471.6|Smtnl1|ENSMUSG00000027077.8|smoothelin-like 1
mm39_v1_chr19_-_36714053_36714070	1.77587	Foxp2_Foxp3	ENSMUST00000087321.4|Ppp1r3c|ENSMUSG00000067279.4|protein phosphatase 1, regulatory subunit 3C
mm39_v1_chr6_+_15184630_15184661	1.76751	Foxp2_Foxp3	ENSMUST00000115470.3|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr2_-_147888816_147888912	1.76636	Foxp2_Foxp3	ENSMUST00000172928.2|Foxa2|ENSMUSG00000037025.12|forkhead box A2	ENSMUST00000047315.10|Foxa2|ENSMUSG00000037025.12|forkhead box A2
mm39_v1_chr2_+_121859025_121859137	1.76077	Foxp2_Foxp3	ENSMUST00000028668.8|Eif3j1|ENSMUSG00000027236.9|eukaryotic translation initiation factor 3, subunit J1
mm39_v1_chr6_-_40590244_40590244	1.75695	Foxp2_Foxp3	ENSMUST00000076565.3|Tas2r138|ENSMUSG00000058250.3|taste receptor, type 2, member 138
mm39_v1_chr13_-_53083494_53083533	1.75367	Foxp2_Foxp3	ENSMUST00000123599.8|Auh|ENSMUSG00000021460.18|AU RNA binding protein/enoyl-coenzyme A hydratase
mm39_v1_chr6_-_39702127_39702288	1.74882	Foxp2_Foxp3	ENSMUST00000101497.4|Braf|ENSMUSG00000002413.16|Braf transforming gene
mm39_v1_chr19_+_42078859_42078939	1.74764	Foxp2_Foxp3	ENSMUST00000235932.2|Pi4k2a|ENSMUSG00000025178.10|phosphatidylinositol 4-kinase type 2 alpha	ENSMUST00000066778.6|Pi4k2a|ENSMUSG00000025178.10|phosphatidylinositol 4-kinase type 2 alpha
mm39_v1_chr9_+_47441471_47441671	1.7394	Foxp2_Foxp3	ENSMUST00000114548.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000152459.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000143026.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000085909.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000114547.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000239368.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000214542.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000034581.4|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1
mm39_v1_chr1_+_75119419_75119443	1.7377	Foxp2_Foxp3	ENSMUST00000097694.11|Retreg2|ENSMUSG00000049339.17|reticulophagy regulator family member 2	ENSMUST00000190240.7|Retreg2|ENSMUSG00000049339.17|reticulophagy regulator family member 2
mm39_v1_chr4_+_97660971_97661090	1.72142	Foxp2_Foxp3	ENSMUST00000152023.8|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr14_+_31363004_31363039	1.71445	Foxp2_Foxp3	ENSMUST00000090147.7|Btd|ENSMUSG00000021900.11|biotinidase
mm39_v1_chrX_-_139443926_139443944	1.71108	Foxp2_Foxp3	ENSMUST00000055738.12|Tsc22d3|ENSMUSG00000031431.14|TSC22 domain family, member 3
mm39_v1_chr19_+_23118545_23118627	1.70698	Foxp2_Foxp3	ENSMUST00000036884.3|Klf9|ENSMUSG00000033863.3|Kruppel-like factor 9
mm39_v1_chr3_+_122277372_122277444	1.70687	Foxp2_Foxp3	ENSMUST00000197073.2|Bcar3|ENSMUSG00000028121.9|breast cancer anti-estrogen resistance 3
mm39_v1_chr13_+_16189041_16189060	1.70427	Foxp2_Foxp3	ENSMUST00000164993.2|Inhba|ENSMUSG00000041324.15|inhibin beta-A
mm39_v1_chr9_+_103917821_103917861	1.68004	Foxp2_Foxp3	ENSMUST00000216593.2|Nphp3|ENSMUSG00000032558.20|nephronophthisis 3 (adolescent)	ENSMUST00000147249.3|Gm28305|ENSMUSG00000101152.2|predicted gene 28305
mm39_v1_chr11_+_96920956_96920999	1.67227	Foxp2_Foxp3	ENSMUST00000153482.2|Scrn2|ENSMUSG00000020877.12|secernin 2
mm39_v1_chr15_+_59520493_59520536	1.66814	Foxp2_Foxp3	ENSMUST00000118228.2|Trib1|ENSMUSG00000032501.10|tribbles pseudokinase 1
mm39_v1_chr12_-_25147139_25147282	1.66347	Foxp2_Foxp3	ENSMUST00000221761.2|Id2|ENSMUSG00000020644.10|inhibitor of DNA binding 2
mm39_v1_chr10_+_23770586_23770586	1.63434	Foxp2_Foxp3	ENSMUST00000041416.8|Vnn1|ENSMUSG00000037440.9|vanin 1
mm39_v1_chr2_+_24866039_24866055	1.63332	Foxp2_Foxp3	ENSMUST00000045295.14|Pnpla7|ENSMUSG00000036833.17|patatin-like phospholipase domain containing 7
mm39_v1_chr11_+_98337655_98337694	1.62488	Foxp2_Foxp3	ENSMUST00000019456.5|Grb7|ENSMUSG00000019312.11|growth factor receptor bound protein 7
mm39_v1_chr6_+_88701810_88701908	1.60681	Foxp2_Foxp3	ENSMUST00000089449.5|Mgll|ENSMUSG00000033174.18|monoglyceride lipase
mm39_v1_chr1_+_131898325_131898347	1.6041	Foxp2_Foxp3	ENSMUST00000027695.8|Slc45a3|ENSMUSG00000026435.16|solute carrier family 45, member 3
mm39_v1_chr6_+_53264255_53264327	1.59495	Foxp2_Foxp3	ENSMUST00000203528.3|Creb5|ENSMUSG00000053007.10|cAMP responsive element binding protein 5
mm39_v1_chr3_+_129326004_129326089	1.59225	Foxp2_Foxp3	ENSMUST00000199910.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000197070.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000071402.7|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm39_v1_chr6_+_17491231_17491242	1.59041	Foxp2_Foxp3	ENSMUST00000080469.12|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr1_-_180073492_180073521	1.59034	Foxp2_Foxp3	ENSMUST00000010753.14|Psen2|ENSMUSG00000010609.16|presenilin 2
mm39_v1_chr10_-_107321938_107321995	1.58524	Foxp2_Foxp3	ENSMUST00000000445.2|Myf5|ENSMUSG00000000435.2|myogenic factor 5
mm39_v1_chr7_-_115423934_115423987	1.584	Foxp2_Foxp3	ENSMUST00000169129.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr1_-_120047868_120047924	1.56434	Foxp2_Foxp3	ENSMUST00000112648.8|Dbi|ENSMUSG00000026385.17|diazepam binding inhibitor
mm39_v1_chr13_+_30529498_30529540	1.54608	Foxp2_Foxp3	ENSMUST00000221743.2|Agtr1a|ENSMUSG00000049115.16|angiotensin II receptor, type 1a
mm39_v1_chr8_+_22996233_22996247	1.5448	Foxp2_Foxp3	ENSMUST00000210854.2|Slc20a2|ENSMUSG00000037656.10|solute carrier family 20, member 2
mm39_v1_chr5_-_90788323_90788397	1.53346	Foxp2_Foxp3	ENSMUST00000202784.4|Rassf6|ENSMUSG00000029370.11|Ras association (RalGDS/AF-6) domain family member 6	ENSMUST00000031317.10|Rassf6|ENSMUSG00000029370.11|Ras association (RalGDS/AF-6) domain family member 6	ENSMUST00000201370.2|Rassf6|ENSMUSG00000029370.11|Ras association (RalGDS/AF-6) domain family member 6
mm39_v1_chr13_-_53083674_53083717	1.52906	Foxp2_Foxp3	ENSMUST00000120535.8|Auh|ENSMUSG00000021460.18|AU RNA binding protein/enoyl-coenzyme A hydratase	ENSMUST00000119311.8|Auh|ENSMUSG00000021460.18|AU RNA binding protein/enoyl-coenzyme A hydratase	ENSMUST00000021913.16|Auh|ENSMUSG00000021460.18|AU RNA binding protein/enoyl-coenzyme A hydratase	ENSMUST00000110031.4|Auh|ENSMUSG00000021460.18|AU RNA binding protein/enoyl-coenzyme A hydratase
mm39_v1_chr9_-_45866264_45866285	1.52828	Foxp2_Foxp3	ENSMUST00000114573.9|Sidt2|ENSMUSG00000034908.17|SID1 transmembrane family, member 2
mm39_v1_chr16_-_4698148_4698179	1.49937	Foxp2_Foxp3	ENSMUST00000037843.7|Ubald1|ENSMUSG00000039568.7|UBA-like domain containing 1
mm39_v1_chr4_-_45012093_45012145	1.49833	Foxp2_Foxp3	ENSMUST00000131991.2|Zbtb5|ENSMUSG00000049657.10|zinc finger and BTB domain containing 5
mm39_v1_chr15_-_54783357_54783438	1.4928	Foxp2_Foxp3	ENSMUST00000167541.3|Enpp2|ENSMUSG00000022425.17|ectonucleotide pyrophosphatase/phosphodiesterase 2	ENSMUST00000171545.9|Enpp2|ENSMUSG00000022425.17|ectonucleotide pyrophosphatase/phosphodiesterase 2	ENSMUST00000041591.16|Enpp2|ENSMUSG00000022425.17|ectonucleotide pyrophosphatase/phosphodiesterase 2	ENSMUST00000173516.8|Enpp2|ENSMUSG00000022425.17|ectonucleotide pyrophosphatase/phosphodiesterase 2
mm39_v1_chr4_+_100336003_100336069	1.48892	Foxp2_Foxp3	ENSMUST00000133493.9|Ube2u|ENSMUSG00000069733.12|ubiquitin-conjugating enzyme E2U (putative)	ENSMUST00000092730.5|Ube2u|ENSMUSG00000069733.12|ubiquitin-conjugating enzyme E2U (putative)
mm39_v1_chr6_+_34840151_34840197	1.48139	Foxp2_Foxp3	ENSMUST00000202010.2|Tmem140|ENSMUSG00000057137.10|transmembrane protein 140
mm39_v1_chr12_-_72117865_72117899	1.47307	Foxp2_Foxp3	ENSMUST00000050649.6|Gpr135|ENSMUSG00000043398.6|G protein-coupled receptor 135
mm39_v1_chr18_-_39622932_39622969	1.47082	Foxp2_Foxp3	ENSMUST00000152853.2|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr3_+_129326285_129326376	1.46699	Foxp2_Foxp3	ENSMUST00000197235.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm39_v1_chr11_-_102298281_102298370	1.46324	Foxp2_Foxp3	ENSMUST00000107098.8|Slc25a39|ENSMUSG00000018677.10|solute carrier family 25, member 39	ENSMUST00000018821.9|Slc25a39|ENSMUSG00000018677.10|solute carrier family 25, member 39
mm39_v1_chr4_-_109013807_109013828	1.4622	Foxp2_Foxp3	ENSMUST00000161363.2|Osbpl9|ENSMUSG00000028559.18|oxysterol binding protein-like 9
mm39_v1_chr13_+_60749995_60750046	1.46035	Foxp2_Foxp3	ENSMUST00000044083.9|Dapk1|ENSMUSG00000021559.15|death associated protein kinase 1
mm39_v1_chr7_-_29935150_29935150	1.45799	Foxp2_Foxp3	ENSMUST00000189482.2|Ovol3|ENSMUSG00000100512.2|ovo like zinc finger 3
mm39_v1_chr2_+_73142945_73143009	1.44046	Foxp2_Foxp3	ENSMUST00000090811.11|Scrn3|ENSMUSG00000008226.15|secernin 3	ENSMUST00000112050.2|Scrn3|ENSMUSG00000008226.15|secernin 3
mm39_v1_chr3_-_51184895_51184996	1.4379	Foxp2_Foxp3	ENSMUST00000108051.8|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000108053.9|Elf2|ENSMUSG00000037174.19|E74-like factor 2
mm39_v1_chr15_+_59520199_59520217	1.43669	Foxp2_Foxp3	ENSMUST00000067543.8|Trib1|ENSMUSG00000032501.10|tribbles pseudokinase 1
mm39_v1_chr11_-_102298141_102298274	1.43307	Foxp2_Foxp3	ENSMUST00000149777.8|Slc25a39|ENSMUSG00000018677.10|solute carrier family 25, member 39	ENSMUST00000154001.8|Slc25a39|ENSMUSG00000018677.10|solute carrier family 25, member 39
mm39_v1_chr2_-_27365633_27365710	1.43015	Foxp2_Foxp3	ENSMUST00000138693.8|Brd3|ENSMUSG00000026918.17|bromodomain containing 3	ENSMUST00000113941.9|Brd3|ENSMUSG00000026918.17|bromodomain containing 3	ENSMUST00000077737.13|Brd3|ENSMUSG00000026918.17|bromodomain containing 3
mm39_v1_chr17_-_34000804_34000804	1.42674	Foxp2_Foxp3	ENSMUST00000002360.17|Angptl4|ENSMUSG00000002289.17|angiopoietin-like 4
mm39_v1_chr3_+_52175757_52175827	1.41559	Foxp2_Foxp3	ENSMUST00000053764.7|Foxo1|ENSMUSG00000044167.7|forkhead box O1
mm39_v1_chr4_-_14621669_14621786	1.40795	Foxp2_Foxp3	ENSMUST00000143105.2|Slc26a7|ENSMUSG00000040569.14|solute carrier family 26, member 7
mm39_v1_chr5_+_92702893_92702929	1.40407	Foxp2_Foxp3	ENSMUST00000146417.9|Fam47e|ENSMUSG00000057068.16|family with sequence similarity 47, member E
mm39_v1_chr14_+_48358331_48358403	1.39897	Foxp2_Foxp3	ENSMUST00000226513.2|Peli2|ENSMUSG00000021846.10|pellino 2
mm39_v1_chr12_-_32000169_32000196	1.39318	Foxp2_Foxp3	ENSMUST00000176520.8|Hbp1|ENSMUSG00000002996.18|high mobility group box transcription factor 1
mm39_v1_chr10_-_93146937_93147024	1.39167	Foxp2_Foxp3	ENSMUST00000008542.12|Elk3|ENSMUSG00000008398.17|ELK3, member of ETS oncogene family
mm39_v1_chr5_-_90788460_90788559	1.38194	Foxp2_Foxp3	ENSMUST00000202704.4|Rassf6|ENSMUSG00000029370.11|Ras association (RalGDS/AF-6) domain family member 6
mm39_v1_chr2_+_38401655_38401764	1.37822	Foxp2_Foxp3	ENSMUST00000054234.10|Nek6|ENSMUSG00000026749.12|NIMA (never in mitosis gene a)-related expressed kinase 6	ENSMUST00000112902.8|Nek6|ENSMUSG00000026749.12|NIMA (never in mitosis gene a)-related expressed kinase 6
mm39_v1_chr2_+_4887015_4887063	1.37064	Foxp2_Foxp3	ENSMUST00000115019.2|Sephs1|ENSMUSG00000026662.14|selenophosphate synthetase 1
mm39_v1_chr6_+_79794899_79794899	1.34886	Foxp2_Foxp3	ENSMUST00000179797.3|Gm20594|ENSMUSG00000096887.3|predicted gene, 20594
mm39_v1_chr12_-_32000209_32000245	1.34246	Foxp2_Foxp3	ENSMUST00000176084.2|Hbp1|ENSMUSG00000002996.18|high mobility group box transcription factor 1	ENSMUST00000176103.8|Hbp1|ENSMUSG00000002996.18|high mobility group box transcription factor 1	ENSMUST00000167458.9|Hbp1|ENSMUSG00000002996.18|high mobility group box transcription factor 1
mm39_v1_chr6_-_138056914_138056914	1.33102	Foxp2_Foxp3	ENSMUST00000171804.4|Slc15a5|ENSMUSG00000044378.13|solute carrier family 15, member 5
mm39_v1_chr2_+_28531239_28531274	1.32758	Foxp2_Foxp3	ENSMUST00000028155.12|Tsc1|ENSMUSG00000026812.17|TSC complex subunit 1	ENSMUST00000113869.8|Tsc1|ENSMUSG00000026812.17|TSC complex subunit 1	ENSMUST00000113867.9|Tsc1|ENSMUSG00000026812.17|TSC complex subunit 1
mm39_v1_chr19_+_44980565_44980575	1.31934	Foxp2_Foxp3	ENSMUST00000179305.2|Sema4g|ENSMUSG00000025207.17|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm39_v1_chr2_-_28806639_28806680	1.30893	Foxp2_Foxp3	ENSMUST00000113847.3|Barhl1|ENSMUSG00000026805.15|BarH like homeobox 1
mm39_v1_chr5_-_97259302_97259413	1.29756	Foxp2_Foxp3	ENSMUST00000196078.5|Paqr3|ENSMUSG00000055725.12|progestin and adipoQ receptor family member III
mm39_v1_chr14_-_71003973_71004005	1.28592	Foxp2_Foxp3	ENSMUST00000226448.2|Xpo7|ENSMUSG00000022100.15|exportin 7	ENSMUST00000022696.8|Xpo7|ENSMUSG00000022100.15|exportin 7
mm39_v1_chr15_-_80951210_80951221	1.28111	Foxp2_Foxp3	ENSMUST00000239267.2|Mrtfa|ENSMUSG00000042292.19|myocardin related transcription factor A
mm39_v1_chr6_+_15185202_15185223	1.27455	Foxp2_Foxp3	ENSMUST00000154448.2|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr1_-_180073322_180073477	1.27184	Foxp2_Foxp3	ENSMUST00000111104.2|Psen2|ENSMUSG00000010609.16|presenilin 2
mm39_v1_chr13_-_63721412_63721412	1.27043	Foxp2_Foxp3	ENSMUST00000195106.2|Ptch1|ENSMUSG00000021466.13|patched 1
mm39_v1_chr4_-_53159885_53159900	1.26339	Foxp2_Foxp3	ENSMUST00000030010.4|Abca1|ENSMUSG00000015243.5|ATP-binding cassette, sub-family A (ABC1), member 1
mm39_v1_chr14_+_79086492_79086662	1.26062	Foxp2_Foxp3	ENSMUST00000040990.7|Vwa8|ENSMUSG00000058997.9|von Willebrand factor A domain containing 8
mm39_v1_chr3_+_53396120_53396148	1.25072	Foxp2_Foxp3	ENSMUST00000029307.4|Stoml3|ENSMUSG00000027744.5|stomatin (Epb7.2)-like 3
mm39_v1_chr14_-_70445086_70445124	1.24637	Foxp2_Foxp3	ENSMUST00000022682.6|Sorbs3|ENSMUSG00000022091.7|sorbin and SH3 domain containing 3
mm39_v1_chr5_+_16758777_16758795	1.24099	Foxp2_Foxp3	ENSMUST00000030683.8|Hgf|ENSMUSG00000028864.8|hepatocyte growth factor
mm39_v1_chr1_-_162726234_162726297	1.23841	Foxp2_Foxp3	ENSMUST00000111510.8|Fmo2|ENSMUSG00000040170.14|flavin containing monooxygenase 2	ENSMUST00000045902.13|Fmo2|ENSMUSG00000040170.14|flavin containing monooxygenase 2
mm39_v1_chr8_+_91681898_91682043	1.23731	Foxp2_Foxp3	ENSMUST00000209746.2|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr18_-_39622829_39622921	1.23435	Foxp2_Foxp3	ENSMUST00000025300.13|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr17_+_34250757_34250826	1.22784	Foxp2_Foxp3	ENSMUST00000044858.16|Rxrb|ENSMUSG00000039656.18|retinoid X receptor beta	ENSMUST00000174299.9|Rxrb|ENSMUSG00000039656.18|retinoid X receptor beta
mm39_v1_chr7_-_101749433_101749466	1.22548	Foxp2_Foxp3	ENSMUST00000106937.8|Art5|ENSMUSG00000070424.13|ADP-ribosyltransferase 5
mm39_v1_chr11_-_107361525_107361554	1.22507	Foxp2_Foxp3	ENSMUST00000103064.10|Pitpnc1|ENSMUSG00000040430.19|phosphatidylinositol transfer protein, cytoplasmic 1
mm39_v1_chr6_-_84565613_84565629	1.22475	Foxp2_Foxp3	ENSMUST00000204146.3|Cyp26b1|ENSMUSG00000063415.13|cytochrome P450, family 26, subfamily b, polypeptide 1
mm39_v1_chr7_+_63937413_63937424	1.21852	Foxp2_Foxp3	ENSMUST00000032736.11|Mtmr10|ENSMUSG00000030522.15|myotubularin related protein 10
mm39_v1_chr3_+_135531409_135531425	1.21785	Foxp2_Foxp3	ENSMUST00000180196.8|Slc39a8|ENSMUSG00000053897.16|solute carrier family 39 (metal ion transporter), member 8
mm39_v1_chr13_-_63712349_63712349	1.19712	Foxp2_Foxp3	ENSMUST00000192155.6|Ptch1|ENSMUSG00000021466.13|patched 1
mm39_v1_chr12_-_57592907_57592926	1.18926	Foxp2_Foxp3	ENSMUST00000044380.8|Foxa1|ENSMUSG00000035451.8|forkhead box A1
mm39_v1_chr14_+_65596070_65596135	1.1831	Foxp2_Foxp3	ENSMUST00000066994.7|Zfp395|ENSMUSG00000034522.11|zinc finger protein 395
mm39_v1_chr6_+_34575435_34575521	1.18122	Foxp2_Foxp3	ENSMUST00000079391.10|Cald1|ENSMUSG00000029761.17|caldesmon 1	ENSMUST00000142512.8|Cald1|ENSMUSG00000029761.17|caldesmon 1	ENSMUST00000115027.8|Cald1|ENSMUSG00000029761.17|caldesmon 1	ENSMUST00000115026.8|Cald1|ENSMUSG00000029761.17|caldesmon 1
mm39_v1_chr17_+_12803019_12803082	1.18061	Foxp2_Foxp3	ENSMUST00000046959.9|Slc22a2|ENSMUSG00000040966.11|solute carrier family 22 (organic cation transporter), member 2	ENSMUST00000233066.2|Slc22a2|ENSMUSG00000040966.11|solute carrier family 22 (organic cation transporter), member 2
mm39_v1_chr15_-_5137951_5137971	1.16976	Foxp2_Foxp3	ENSMUST00000141020.2|Card6|ENSMUSG00000041849.8|caspase recruitment domain family, member 6
mm39_v1_chr12_-_71183371_71183475	1.16656	Foxp2_Foxp3	ENSMUST00000221367.2|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000220482.2|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000221892.2|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000221178.2|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000221559.2|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000166120.9|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000021486.10|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000221797.2|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000221815.2|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9
mm39_v1_chr6_+_14901439_14901531	1.16633	Foxp2_Foxp3	ENSMUST00000128567.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr7_+_16043502_16043567	1.15747	Foxp2_Foxp3	ENSMUST00000002152.13|Bbc3|ENSMUSG00000002083.14|BCL2 binding component 3
mm39_v1_chr5_-_38649291_38649305	1.14682	Foxp2_Foxp3	ENSMUST00000129099.8|Slc2a9|ENSMUSG00000005107.14|solute carrier family 2 (facilitated glucose transporter), member 9
mm39_v1_chr16_-_43836681_43836799	1.14632	Foxp2_Foxp3	ENSMUST00000036174.10|Gramd1c|ENSMUSG00000036292.15|GRAM domain containing 1C
mm39_v1_chr5_+_102629240_102629257	1.1445	Foxp2_Foxp3	ENSMUST00000073302.12|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24	ENSMUST00000094559.9|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24
mm39_v1_chr5_-_108022900_108022973	1.14372	Foxp2_Foxp3	ENSMUST00000138111.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5	ENSMUST00000112642.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5
mm39_v1_chr2_-_91274967_91275071	1.13818	Foxp2_Foxp3	ENSMUST00000064652.14|1110051M20Rik|ENSMUSG00000040591.19|RIKEN cDNA 1110051M20 gene	ENSMUST00000102594.11|1110051M20Rik|ENSMUSG00000040591.19|RIKEN cDNA 1110051M20 gene	ENSMUST00000094835.9|1110051M20Rik|ENSMUSG00000040591.19|RIKEN cDNA 1110051M20 gene
mm39_v1_chr7_+_40636967_40636983	1.13546	Foxp2_Foxp3	ENSMUST00000206529.2|4930433I11Rik|ENSMUSG00000091692.3|RIKEN cDNA 4930433I11 gene	ENSMUST00000171664.2|4930433I11Rik|ENSMUSG00000091692.3|RIKEN cDNA 4930433I11 gene
mm39_v1_chr10_+_62756426_62756461	1.12927	Foxp2_Foxp3	ENSMUST00000144459.2|Slc25a16|ENSMUSG00000071253.9|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
mm39_v1_chr12_-_84447702_84447721	1.12651	Foxp2_Foxp3	ENSMUST00000122194.8|Entpd5|ENSMUSG00000021236.17|ectonucleoside triphosphate diphosphohydrolase 5
mm39_v1_chr15_+_10177709_10177741	1.12617	Foxp2_Foxp3	ENSMUST00000124470.8|Prlr|ENSMUSG00000005268.21|prolactin receptor
mm39_v1_chr2_+_89808124_89808124	1.11365	Foxp2_Foxp3	ENSMUST00000061830.2|Olfr1260|ENSMUSG00000042894.12|olfactory receptor 1260
mm39_v1_chr13_+_42205790_42205880	1.10461	Foxp2_Foxp3	ENSMUST00000220525.2|Hivep1|ENSMUSG00000021366.9|human immunodeficiency virus type I enhancer binding protein 1
mm39_v1_chr1_+_106099482_106099598	1.09817	Foxp2_Foxp3	ENSMUST00000061047.7|Phlpp1|ENSMUSG00000044340.8|PH domain and leucine rich repeat protein phosphatase 1
mm39_v1_chr1_-_167294349_167294349	1.09443	Foxp2_Foxp3	ENSMUST00000036643.6|Lrrc52|ENSMUSG00000040485.6|leucine rich repeat containing 52
mm39_v1_chr11_-_73215442_73215467	1.09277	Foxp2_Foxp3	ENSMUST00000021119.9|Aspa|ENSMUSG00000020774.10|aspartoacylase
mm39_v1_chr13_-_63712140_63712140	1.09165	Foxp2_Foxp3	ENSMUST00000195756.6|Ptch1|ENSMUSG00000021466.13|patched 1
mm39_v1_chr3_-_148696155_148696197	1.08855	Foxp2_Foxp3	ENSMUST00000196526.5|Adgrl2|ENSMUSG00000028184.13|adhesion G protein-coupled receptor L2	ENSMUST00000200543.5|Adgrl2|ENSMUSG00000028184.13|adhesion G protein-coupled receptor L2	ENSMUST00000200154.5|Adgrl2|ENSMUSG00000028184.13|adhesion G protein-coupled receptor L2
mm39_v1_chr11_+_54329014_54329046	1.08447	Foxp2_Foxp3	ENSMUST00000046835.14|Fnip1|ENSMUSG00000035992.16|folliculin interacting protein 1
mm39_v1_chr5_+_3646066_3646256	1.08306	Foxp2_Foxp3	ENSMUST00000006061.13|Pex1|ENSMUSG00000005907.15|peroxisomal biogenesis factor 1	ENSMUST00000121291.8|Pex1|ENSMUSG00000005907.15|peroxisomal biogenesis factor 1	ENSMUST00000142516.2|Pex1|ENSMUSG00000005907.15|peroxisomal biogenesis factor 1
mm39_v1_chr14_-_31503869_31503892	1.08021	Foxp2_Foxp3	ENSMUST00000227089.2|Ankrd28|ENSMUSG00000014496.9|ankyrin repeat domain 28
mm39_v1_chrX_-_163763337_163763371	1.07099	Foxp2_Foxp3	ENSMUST00000112248.9|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2
mm39_v1_chr16_-_28748410_28748457	1.07068	Foxp2_Foxp3	ENSMUST00000100023.3|Mb21d2|ENSMUSG00000051065.10|Mab-21 domain containing 2
mm39_v1_chrX_-_163763273_163763333	1.07043	Foxp2_Foxp3	ENSMUST00000112247.9|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2	ENSMUST00000004715.2|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2
mm39_v1_chr12_+_84498196_84498292	1.05961	Foxp2_Foxp3	ENSMUST00000137170.3|Lin52|ENSMUSG00000085793.3|lin-52 homolog (C. elegans)
mm39_v1_chrX_+_71025128_71025128	1.0569	Foxp2_Foxp3	ENSMUST00000114569.2|Fate1|ENSMUSG00000053593.11|fetal and adult testis expressed 1
mm39_v1_chr7_+_126376319_126376350	1.0495	Foxp2_Foxp3	ENSMUST00000132643.2|Ypel3|ENSMUSG00000042675.16|yippee like 3
mm39_v1_chr7_-_37472979_37473066	1.04585	Foxp2_Foxp3	ENSMUST00000176534.8|Zfp536|ENSMUSG00000043456.18|zinc finger protein 536
mm39_v1_chr8_+_105996419_105996465	1.04574	Foxp2_Foxp3	ENSMUST00000036127.9|Hsf4|ENSMUSG00000033249.11|heat shock transcription factor 4	ENSMUST00000163734.9|Hsf4|ENSMUSG00000033249.11|heat shock transcription factor 4
mm39_v1_chr16_+_43056218_43056243	1.04409	Foxp2_Foxp3	ENSMUST00000146708.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr5_+_16758538_16758587	1.03889	Foxp2_Foxp3	ENSMUST00000199581.5|Hgf|ENSMUSG00000028864.8|hepatocyte growth factor
mm39_v1_chr14_+_26722319_26722463	1.0387	Foxp2_Foxp3	ENSMUST00000035433.10|Hesx1|ENSMUSG00000040726.11|homeobox gene expressed in ES cells
mm39_v1_chr1_+_157353696_157353724	1.03639	Foxp2_Foxp3	ENSMUST00000111700.8|Sec16b|ENSMUSG00000026589.15|SEC16 homolog B (S. cerevisiae)
mm39_v1_chr5_+_16758897_16758926	1.03537	Foxp2_Foxp3	ENSMUST00000196645.2|Hgf|ENSMUSG00000028864.8|hepatocyte growth factor
mm39_v1_chr11_-_50101592_50101654	1.03468	Foxp2_Foxp3	ENSMUST00000143379.2|Sqstm1|ENSMUSG00000015837.16|sequestosome 1	ENSMUST00000015981.12|Sqstm1|ENSMUSG00000015837.16|sequestosome 1	ENSMUST00000102774.11|Sqstm1|ENSMUSG00000015837.16|sequestosome 1
mm39_v1_chr2_+_24866057_24866122	1.03361	Foxp2_Foxp3	ENSMUST00000153618.8|Pnpla7|ENSMUSG00000036833.17|patatin-like phospholipase domain containing 7	ENSMUST00000152777.2|Pnpla7|ENSMUSG00000036833.17|patatin-like phospholipase domain containing 7
mm39_v1_chr17_+_37253802_37253816	1.03137	Foxp2_Foxp3	ENSMUST00000040498.12|Rnf39|ENSMUSG00000036492.13|ring finger protein 39
mm39_v1_chr11_+_85243970_85244045	1.0257	Foxp2_Foxp3	ENSMUST00000108056.8|Bcas3|ENSMUSG00000059439.16|breast carcinoma amplified sequence 3	ENSMUST00000108061.8|Bcas3|ENSMUSG00000059439.16|breast carcinoma amplified sequence 3	ENSMUST00000108062.8|Bcas3|ENSMUSG00000059439.16|breast carcinoma amplified sequence 3	ENSMUST00000138423.8|Bcas3|ENSMUSG00000059439.16|breast carcinoma amplified sequence 3	ENSMUST00000092821.10|Bcas3|ENSMUSG00000059439.16|breast carcinoma amplified sequence 3	ENSMUST00000074875.11|Bcas3|ENSMUSG00000059439.16|breast carcinoma amplified sequence 3
mm39_v1_chr10_+_63222338_63222369	1.02063	Foxp2_Foxp3	ENSMUST00000043317.7|Dnajc12|ENSMUSG00000036764.13|DnaJ heat shock protein family (Hsp40) member C12
mm39_v1_chr16_-_26345493_26345524	1.01991	Foxp2_Foxp3	ENSMUST00000165687.3|Tmem207|ENSMUSG00000091972.3|transmembrane protein 207
mm39_v1_chr1_+_167177545_167177622	1.01578	Foxp2_Foxp3	ENSMUST00000028004.11|Aldh9a1|ENSMUSG00000026687.15|aldehyde dehydrogenase 9, subfamily A1
mm39_v1_chr1_-_30912916_30913006	1.0019	Foxp2_Foxp3	ENSMUST00000188780.2|Phf3|ENSMUSG00000048874.16|PHD finger protein 3
mm39_v1_chr4_+_33132502_33132521	1.00085	Foxp2_Foxp3	ENSMUST00000029947.6|Gabrr1|ENSMUSG00000028280.10|gamma-aminobutyric acid (GABA) C receptor, subunit rho 1
mm39_v1_chr12_-_84447625_84447677	0.997474	Foxp2_Foxp3	ENSMUST00000117286.2|Entpd5|ENSMUSG00000021236.17|ectonucleoside triphosphate diphosphohydrolase 5
mm39_v1_chr11_+_118324652_118324689	0.996842	Foxp2_Foxp3	ENSMUST00000106286.3|C1qtnf1|ENSMUSG00000017446.15|C1q and tumor necrosis factor related protein 1
mm39_v1_chr13_-_18347125_18347125	0.996033	Foxp2_Foxp3	ENSMUST00000184299.2|Pou6f2|ENSMUSG00000009734.19|POU domain, class 6, transcription factor 2
mm39_v1_chr5_-_88823049_88823101	0.991986	Foxp2_Foxp3	ENSMUST00000133532.8|Grsf1|ENSMUSG00000044221.15|G-rich RNA sequence binding factor 1	ENSMUST00000150438.2|Grsf1|ENSMUSG00000044221.15|G-rich RNA sequence binding factor 1
mm39_v1_chr4_-_45012287_45012412	0.983379	Foxp2_Foxp3	ENSMUST00000055028.9|Zbtb5|ENSMUSG00000049657.10|zinc finger and BTB domain containing 5	ENSMUST00000180217.2|Zbtb5|ENSMUSG00000049657.10|zinc finger and BTB domain containing 5	ENSMUST00000107817.3|Zbtb5|ENSMUSG00000049657.10|zinc finger and BTB domain containing 5
mm39_v1_chr3_+_90161470_90161640	0.980441	Foxp2_Foxp3	ENSMUST00000029545.15|Crtc2|ENSMUSG00000027936.19|CREB regulated transcription coactivator 2
mm39_v1_chr14_+_73475335_73475447	0.978158	Foxp2_Foxp3	ENSMUST00000044405.8|Lpar6|ENSMUSG00000033446.8|lysophosphatidic acid receptor 6
mm39_v1_chr10_-_80513927_80513963	0.976647	Foxp2_Foxp3	ENSMUST00000199949.2|Mknk2|ENSMUSG00000020190.14|MAP kinase-interacting serine/threonine kinase 2
mm39_v1_chr9_-_42372710_42372757	0.97574	Foxp2_Foxp3	ENSMUST00000066179.14|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like
mm39_v1_chr8_+_71176713_71176727	0.971657	Foxp2_Foxp3	ENSMUST00000034307.14|Pde4c|ENSMUSG00000031842.16|phosphodiesterase 4C, cAMP specific	ENSMUST00000239435.2|Pde4c|ENSMUSG00000031842.16|phosphodiesterase 4C, cAMP specific	ENSMUST00000239487.2|Pde4c|ENSMUSG00000031842.16|phosphodiesterase 4C, cAMP specific	ENSMUST00000110095.3|Pde4c|ENSMUSG00000031842.16|phosphodiesterase 4C, cAMP specific
mm39_v1_chr11_+_110914678_110914699	0.959418	Foxp2_Foxp3	ENSMUST00000150902.8|Kcnj16|ENSMUSG00000051497.16|potassium inwardly-rectifying channel, subfamily J, member 16	ENSMUST00000178798.2|Kcnj16|ENSMUSG00000051497.16|potassium inwardly-rectifying channel, subfamily J, member 16
mm39_v1_chr14_-_40730180_40730232	0.953276	Foxp2_Foxp3	ENSMUST00000136661.8|Prxl2a|ENSMUSG00000021792.16|peroxiredoxin like 2A
mm39_v1_chr10_-_95159933_95159979	0.940523	Foxp2_Foxp3	ENSMUST00000053594.7|Cradd|ENSMUSG00000045867.11|CASP2 and RIPK1 domain containing adaptor with death domain
mm39_v1_chr14_-_62718581_62718604	0.938728	Foxp2_Foxp3	ENSMUST00000186010.8|Gm4131|ENSMUSG00000100486.8|predicted gene 4131
mm39_v1_chr10_+_62756409_62756425	0.938289	Foxp2_Foxp3	ENSMUST00000044977.10|Slc25a16|ENSMUSG00000071253.9|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
mm39_v1_chr11_-_107238956_107239005	0.935704	Foxp2_Foxp3	ENSMUST00000134763.2|Pitpnc1|ENSMUSG00000040430.19|phosphatidylinositol transfer protein, cytoplasmic 1
mm39_v1_chr12_-_56660054_56660113	0.929214	Foxp2_Foxp3	ENSMUST00000072631.6|Nkx2-9|ENSMUSG00000058669.8|NK2 homeobox 9
mm39_v1_chr18_+_5593566_5593602	0.925924	Foxp2_Foxp3	ENSMUST00000160910.2|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1
mm39_v1_chr4_+_32238950_32238964	0.922068	Foxp2_Foxp3	ENSMUST00000037416.13|Bach2|ENSMUSG00000040270.17|BTB and CNC homology, basic leucine zipper transcription factor 2
mm39_v1_chr19_-_27988534_27988581	0.919336	Foxp2_Foxp3	ENSMUST00000174850.8|Rfx3|ENSMUSG00000040929.18|regulatory factor X, 3 (influences HLA class II expression)
mm39_v1_chr3_-_51184730_51184866	0.916405	Foxp2_Foxp3	ENSMUST00000195432.2|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000091144.11|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000156983.3|Elf2|ENSMUSG00000037174.19|E74-like factor 2
mm39_v1_chr6_-_39534765_39534801	0.90692	Foxp2_Foxp3	ENSMUST00000036877.10|Dennd2a|ENSMUSG00000038456.10|DENN/MADD domain containing 2A	ENSMUST00000154149.2|Dennd2a|ENSMUSG00000038456.10|DENN/MADD domain containing 2A
mm39_v1_chr8_-_85500010_85500052	0.884644	Foxp2_Foxp3	ENSMUST00000109764.8|Nfix|ENSMUSG00000001911.17|nuclear factor I/X
mm39_v1_chr16_+_95058895_95059063	0.882215	Foxp2_Foxp3	ENSMUST00000113859.8|Kcnj15|ENSMUSG00000062609.15|potassium inwardly-rectifying channel, subfamily J, member 15	ENSMUST00000152516.2|Kcnj15|ENSMUSG00000062609.15|potassium inwardly-rectifying channel, subfamily J, member 15
mm39_v1_chr17_+_34251041_34251170	0.881474	Foxp2_Foxp3	ENSMUST00000173354.9|Rxrb|ENSMUSG00000039656.18|retinoid X receptor beta
mm39_v1_chr1_+_75119472_75119624	0.873835	Foxp2_Foxp3	ENSMUST00000189650.7|Retreg2|ENSMUSG00000049339.17|reticulophagy regulator family member 2
mm39_v1_chr8_-_71964379_71964405	0.868546	Foxp2_Foxp3	ENSMUST00000048452.6|Plvap|ENSMUSG00000034845.7|plasmalemma vesicle associated protein
mm39_v1_chr14_+_52818032_52818122	0.864164	Foxp2_Foxp3	ENSMUST00000103569.3|Trav3-1|ENSMUSG00000076760.3|T cell receptor alpha variable 3-1
mm39_v1_chr15_+_101371353_101371359	0.860891	Foxp2_Foxp3	ENSMUST00000088049.5|Krt86|ENSMUSG00000067614.6|keratin 86
mm39_v1_chrM_+_5319_5333	0.853002	Foxp2_Foxp3	ENSMUST00000082402.1|mt-Co1|ENSMUSG00000064351.1|mitochondrially encoded cytochrome c oxidase I
mm39_v1_chr5_+_102629365_102629425	0.84947	Foxp2_Foxp3	ENSMUST00000112854.8|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24
mm39_v1_chr4_-_117744476_117744553	0.845404	Foxp2_Foxp3	ENSMUST00000132073.2|Atp6v0b|ENSMUSG00000033379.14|ATPase, H+ transporting, lysosomal V0 subunit B	ENSMUST00000150204.8|Atp6v0b|ENSMUSG00000033379.14|ATPase, H+ transporting, lysosomal V0 subunit B	ENSMUST00000147845.2|Atp6v0b|ENSMUSG00000033379.14|ATPase, H+ transporting, lysosomal V0 subunit B	ENSMUST00000036380.14|Atp6v0b|ENSMUSG00000033379.14|ATPase, H+ transporting, lysosomal V0 subunit B	ENSMUST00000136596.2|Atp6v0b|ENSMUSG00000033379.14|ATPase, H+ transporting, lysosomal V0 subunit B
mm39_v1_chr6_-_50631418_50631427	0.843008	Foxp2_Foxp3	ENSMUST00000031853.8|Npvf|ENSMUSG00000029831.8|neuropeptide VF precursor
mm39_v1_chr6_-_87786736_87786769	0.833486	Foxp2_Foxp3	ENSMUST00000032134.9|Rab43|ENSMUSG00000030055.17|RAB43, member RAS oncogene family
mm39_v1_chr1_+_53100796_53100816	0.831503	Foxp2_Foxp3	ENSMUST00000027269.7|Mstn|ENSMUSG00000026100.7|myostatin	ENSMUST00000191197.2|Mstn|ENSMUSG00000026100.7|myostatin
mm39_v1_chr7_-_141850806_141850855	0.826642	Foxp2_Foxp3	ENSMUST00000084413.7|Krtap5-1|ENSMUSG00000066100.8|keratin associated protein 5-1	ENSMUST00000188274.2|Krtap5-1|ENSMUSG00000066100.8|keratin associated protein 5-1
mm39_v1_chr11_-_99433984_99434048	0.823249	Foxp2_Foxp3	ENSMUST00000107443.8|Krt40|ENSMUSG00000059169.10|keratin 40	ENSMUST00000074253.4|Krt40|ENSMUSG00000059169.10|keratin 40
mm39_v1_chr15_+_25940931_25941021	0.820858	Foxp2_Foxp3	ENSMUST00000110438.3|Retreg1|ENSMUSG00000022270.17|reticulophagy regulator 1
mm39_v1_chr1_+_42734889_42734937	0.819366	Foxp2_Foxp3	ENSMUST00000054883.4|Pou3f3|ENSMUSG00000045515.5|POU domain, class 3, transcription factor 3
mm39_v1_chr15_+_92495007_92495051	0.809923	Foxp2_Foxp3	ENSMUST00000035399.10|Pdzrn4|ENSMUSG00000036218.17|PDZ domain containing RING finger 4
mm39_v1_chr6_-_106777014_106777056	0.808916	Foxp2_Foxp3	ENSMUST00000013882.10|Crbn|ENSMUSG00000005362.15|cereblon	ENSMUST00000113239.10|Crbn|ENSMUSG00000005362.15|cereblon
mm39_v1_chr4_-_119217079_119217095	0.806648	Foxp2_Foxp3	ENSMUST00000143494.3|Ccdc30|ENSMUSG00000028637.17|coiled-coil domain containing 30	ENSMUST00000154606.9|Ccdc30|ENSMUSG00000028637.17|coiled-coil domain containing 30
mm39_v1_chr3_-_129597679_129597746	0.806171	Foxp2_Foxp3	ENSMUST00000185462.7|Lrit3|ENSMUSG00000093865.8|leucine-rich repeat, immunoglobulin-like and transmembrane domains 3	ENSMUST00000179187.2|Lrit3|ENSMUSG00000093865.8|leucine-rich repeat, immunoglobulin-like and transmembrane domains 3
mm39_v1_chr16_+_91022300_91022345	0.804387	Foxp2_Foxp3	ENSMUST00000035608.10|Olig2|ENSMUSG00000039830.10|oligodendrocyte transcription factor 2
mm39_v1_chr2_-_103858632_103858660	0.802842	Foxp2_Foxp3	ENSMUST00000056170.4|4931422A03Rik|ENSMUSG00000046085.8|RIKEN cDNA 4931422A03 gene
mm39_v1_chr2_-_25124240_25124376	0.800833	Foxp2_Foxp3	ENSMUST00000006638.8|Slc34a3|ENSMUSG00000006469.14|solute carrier family 34 (sodium phosphate), member 3
mm39_v1_chr18_+_36661198_36661210	0.791152	Foxp2_Foxp3	ENSMUST00000237174.2|Slc4a9|ENSMUSG00000024485.17|solute carrier family 4, sodium bicarbonate cotransporter, member 9	ENSMUST00000236124.2|Slc4a9|ENSMUSG00000024485.17|solute carrier family 4, sodium bicarbonate cotransporter, member 9	ENSMUST00000236779.2|Slc4a9|ENSMUSG00000024485.17|solute carrier family 4, sodium bicarbonate cotransporter, member 9	ENSMUST00000235181.2|Slc4a9|ENSMUSG00000024485.17|solute carrier family 4, sodium bicarbonate cotransporter, member 9	ENSMUST00000074298.13|Slc4a9|ENSMUSG00000024485.17|solute carrier family 4, sodium bicarbonate cotransporter, member 9	ENSMUST00000115694.3|Slc4a9|ENSMUSG00000024485.17|solute carrier family 4, sodium bicarbonate cotransporter, member 9	ENSMUST00000236126.2|Slc4a9|ENSMUSG00000024485.17|solute carrier family 4, sodium bicarbonate cotransporter, member 9
mm39_v1_chr14_-_50425655_50425655	0.790212	Foxp2_Foxp3	ENSMUST00000205837.3|Olfr730|ENSMUSG00000109835.3|olfactory receptor 730
mm39_v1_chr2_-_73722874_73722900	0.789451	Foxp2_Foxp3	ENSMUST00000136958.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112010.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000128531.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112017.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr6_+_3993774_3993792	0.787242	Foxp2_Foxp3	ENSMUST00000031673.7|Gngt1|ENSMUSG00000029663.11|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
mm39_v1_chr1_-_136888118_136888234	0.786344	Foxp2_Foxp3	ENSMUST00000192357.6|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2	ENSMUST00000027649.14|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2
mm39_v1_chr6_-_41535292_41535305	0.781519	Foxp2_Foxp3	ENSMUST00000103300.3|Trbv31|ENSMUSG00000076499.4|T cell receptor beta, variable 31
mm39_v1_chr16_+_16031182_16031228	0.761741	Foxp2_Foxp3	ENSMUST00000039408.3|Pkp2|ENSMUSG00000041957.16|plakophilin 2
mm39_v1_chr11_+_82802079_82802120	0.761597	Foxp2_Foxp3	ENSMUST00000018989.14|Unc45b|ENSMUSG00000018845.15|unc-45 myosin chaperone B	ENSMUST00000164945.3|Unc45b|ENSMUSG00000018845.15|unc-45 myosin chaperone B
mm39_v1_chr19_+_6096606_6096692	0.761471	Foxp2_Foxp3	ENSMUST00000138532.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin	ENSMUST00000129081.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin	ENSMUST00000156550.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin
mm39_v1_chr6_+_42382368_42382368	0.751823	Foxp2_Foxp3	ENSMUST00000070178.5|Tas2r135|ENSMUSG00000056203.5|taste receptor, type 2, member 135
mm39_v1_chr1_+_52158693_52158710	0.743061	Foxp2_Foxp3	ENSMUST00000189347.7|Stat1|ENSMUSG00000026104.15|signal transducer and activator of transcription 1
mm39_v1_chr11_-_58521327_58521327	0.741953	Foxp2_Foxp3	ENSMUST00000214132.2|Olfr323|ENSMUSG00000043880.6|olfactory receptor 323
mm39_v1_chr7_-_12829100_12829100	0.741116	Foxp2_Foxp3	ENSMUST00000209822.3|Vmn1r85|ENSMUSG00000070817.4|vomeronasal 1 receptor 85	ENSMUST00000235753.2|Vmn1r85|ENSMUSG00000070817.4|vomeronasal 1 receptor 85
mm39_v1_chrX_-_166906307_166906330	0.739552	Foxp2_Foxp3	ENSMUST00000112149.9|Frmpd4|ENSMUSG00000049176.17|FERM and PDZ domain containing 4
mm39_v1_chr11_+_78067537_78067587	0.738581	Foxp2_Foxp3	ENSMUST00000098545.12|Tlcd1|ENSMUSG00000019437.18|TLC domain containing 1
mm39_v1_chr13_-_21257469_21257469	0.72697	Foxp2_Foxp3	ENSMUST00000058168.2|Olfr1370|ENSMUSG00000042869.3|olfactory receptor 1370
mm39_v1_chr10_-_128532126_128532142	0.724549	Foxp2_Foxp3	ENSMUST00000000727.4|Rab5b|ENSMUSG00000000711.4|RAB5B, member RAS oncogene family
mm39_v1_chr18_-_39622295_39622350	0.719959	Foxp2_Foxp3	ENSMUST00000131885.2|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr9_+_43705418_43705454	0.718171	Foxp2_Foxp3	ENSMUST00000216893.2|Nectin1|ENSMUSG00000032012.10|nectin cell adhesion molecule 1
mm39_v1_chr6_-_28126124_28126194	0.718099	Foxp2_Foxp3	ENSMUST00000115324.9|Grm8|ENSMUSG00000024211.16|glutamate receptor, metabotropic 8	ENSMUST00000090512.10|Grm8|ENSMUSG00000024211.16|glutamate receptor, metabotropic 8
mm39_v1_chr18_+_47245204_47245214	0.71537	Foxp2_Foxp3	ENSMUST00000234633.2|Hspe1-rs1|ENSMUSG00000117621.2|heat shock protein 1 (chaperonin 10), related sequence 1
mm39_v1_chr5_+_31205971_31206129	0.713144	Foxp2_Foxp3	ENSMUST00000013766.13|Atraid|ENSMUSG00000013622.16|all-trans retinoic acid induced differentiation factor	ENSMUST00000201773.4|Atraid|ENSMUSG00000013622.16|all-trans retinoic acid induced differentiation factor	ENSMUST00000200748.4|Atraid|ENSMUSG00000013622.16|all-trans retinoic acid induced differentiation factor	ENSMUST00000201136.2|Atraid|ENSMUSG00000013622.16|all-trans retinoic acid induced differentiation factor
mm39_v1_chr16_-_4377640_4377718	0.712653	Foxp2_Foxp3	ENSMUST00000005862.9|Tfap4|ENSMUSG00000005718.9|transcription factor AP4
mm39_v1_chr14_-_70449438_70449498	0.712388	Foxp2_Foxp3	ENSMUST00000227929.2|Sorbs3|ENSMUSG00000022091.7|sorbin and SH3 domain containing 3
mm39_v1_chr7_+_44499005_44499061	0.709991	Foxp2_Foxp3	ENSMUST00000150335.2|Akt1s1|ENSMUSG00000011096.18|AKT1 substrate 1 (proline-rich)	ENSMUST00000107882.8|Akt1s1|ENSMUSG00000011096.18|AKT1 substrate 1 (proline-rich)
mm39_v1_chr10_+_33071964_33071972	0.709254	Foxp2_Foxp3	ENSMUST00000219211.2|Trdn|ENSMUSG00000019787.10|triadin
mm39_v1_chr9_+_13677266_13677339	0.707817	Foxp2_Foxp3	ENSMUST00000152532.8|Mtmr2|ENSMUSG00000031918.17|myotubularin related protein 2
mm39_v1_chr9_+_57818384_57818399	0.707512	Foxp2_Foxp3	ENSMUST00000217129.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)
mm39_v1_chr11_-_99494134_99494134	0.706982	Foxp2_Foxp3	ENSMUST00000072306.4|Gm11938|ENSMUSG00000057674.4|predicted gene 11938
mm39_v1_chr7_+_40682143_40682143	0.704152	Foxp2_Foxp3	ENSMUST00000164422.2|Gm4884|ENSMUSG00000048312.8|predicted gene 4884
mm39_v1_chr11_+_98489117_98489117	0.698612	Foxp2_Foxp3	ENSMUST00000142268.3|Lrrc3c|ENSMUSG00000086545.5|leucine rich repeat containing 3C
mm39_v1_chr11_-_20691440_20691545	0.690586	Foxp2_Foxp3	ENSMUST00000177543.8|Aftph|ENSMUSG00000049659.16|aftiphilin
mm39_v1_chr7_-_39062584_39062584	0.686343	Foxp2_Foxp3	ENSMUST00000108017.2|Gm5114|ENSMUSG00000053742.9|predicted gene 5114
mm39_v1_chr14_+_54418031_54418031	0.686082	Foxp2_Foxp3	ENSMUST00000103704.2|Traj38|ENSMUSG00000076892.2|T cell receptor alpha joining 38
mm39_v1_chrX_+_102400061_102400094	0.68357	Foxp2_Foxp3	ENSMUST00000116547.3|Chic1|ENSMUSG00000031327.11|cysteine-rich hydrophobic domain 1
mm39_v1_chr14_-_4488167_4488189	0.679965	Foxp2_Foxp3	ENSMUST00000022304.12|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta
mm39_v1_chr15_+_102012782_102012860	0.679935	Foxp2_Foxp3	ENSMUST00000230474.2|Tns2|ENSMUSG00000037003.17|tensin 2
mm39_v1_chr1_-_180524587_180524599	0.678025	Foxp2_Foxp3	ENSMUST00000027778.8|Mixl1|ENSMUSG00000026497.8|Mix1 homeobox-like 1 (Xenopus laevis)
mm39_v1_chr7_+_126376353_126376385	0.67652	Foxp2_Foxp3	ENSMUST00000106356.2|Ypel3|ENSMUSG00000042675.16|yippee like 3
mm39_v1_chr3_+_85878376_85878482	0.676497	Foxp2_Foxp3	ENSMUST00000238443.2|Sh3d19|ENSMUSG00000028082.15|SH3 domain protein D19
mm39_v1_chr18_-_78249612_78249655	0.670744	Foxp2_Foxp3	ENSMUST00000163367.3|Slc14a2|ENSMUSG00000024552.17|solute carrier family 14 (urea transporter), member 2
mm39_v1_chr10_-_41455203_41455203	0.66875	Foxp2_Foxp3	ENSMUST00000095227.10|Ccdc162|ENSMUSG00000075225.16|coiled-coil domain containing 162
mm39_v1_chr3_+_101917392_101917439	0.66735	Foxp2_Foxp3	ENSMUST00000196324.2|Nhlh2|ENSMUSG00000048540.9|nescient helix loop helix 2
mm39_v1_chr19_+_5927821_5927869	0.66639	Foxp2_Foxp3	ENSMUST00000145200.8|Slc25a45|ENSMUSG00000024818.16|solute carrier family 25, member 45	ENSMUST00000025732.14|Slc25a45|ENSMUSG00000024818.16|solute carrier family 25, member 45	ENSMUST00000125114.8|Slc25a45|ENSMUSG00000024818.16|solute carrier family 25, member 45	ENSMUST00000155697.8|Slc25a45|ENSMUSG00000024818.16|solute carrier family 25, member 45
mm39_v1_chrX_+_93278203_93278210	0.664329	Foxp2_Foxp3	ENSMUST00000153900.8|Klhl15|ENSMUSG00000043929.17|kelch-like 15
mm39_v1_chr2_-_152239966_152239997	0.663023	Foxp2_Foxp3	ENSMUST00000063332.9|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12	ENSMUST00000182625.2|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12
mm39_v1_chr8_-_32408864_32408913	0.653709	Foxp2_Foxp3	ENSMUST00000073884.7|Nrg1|ENSMUSG00000062991.10|neuregulin 1	ENSMUST00000238812.2|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chr15_+_32177435_32177435	0.6491	Foxp2_Foxp3	ENSMUST00000057633.4|Tas2r119|ENSMUSG00000045267.4|taste receptor, type 2, member 119
mm39_v1_chr18_-_80751327_80751395	0.64894	Foxp2_Foxp3	ENSMUST00000236310.2|Nfatc1|ENSMUSG00000033016.17|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	ENSMUST00000167977.8|Nfatc1|ENSMUSG00000033016.17|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	ENSMUST00000035800.8|Nfatc1|ENSMUSG00000033016.17|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1
mm39_v1_chr6_+_139987275_139987288	0.642554	Foxp2_Foxp3	ENSMUST00000043797.6|Capza3|ENSMUSG00000041791.7|capping protein (actin filament) muscle Z-line, alpha 3
mm39_v1_chr1_+_19282278_19282330	0.637372	Foxp2_Foxp3	ENSMUST00000064976.6|Tfap2b|ENSMUSG00000025927.14|transcription factor AP-2 beta
mm39_v1_chr7_-_141719474_141719490	0.636154	Foxp2_Foxp3	ENSMUST00000168049.2|Gm4553|ENSMUSG00000090471.3|predicted gene 4553	ENSMUST00000210925.2|Gm4553|ENSMUSG00000090471.3|predicted gene 4553
mm39_v1_chr1_+_177272297_177272308	0.635436	Foxp2_Foxp3	ENSMUST00000193440.2|Zbtb18|ENSMUSG00000063659.12|zinc finger and BTB domain containing 18
mm39_v1_chr17_+_34159633_34159684	0.633265	Foxp2_Foxp3	ENSMUST00000025170.11|Wdr46|ENSMUSG00000024312.11|WD repeat domain 46
mm39_v1_chrX_-_138683102_138683118	0.632427	Foxp2_Foxp3	ENSMUST00000101217.4|Ripply1|ENSMUSG00000072945.4|ripply transcriptional repressor 1
mm39_v1_chr4_+_102427247_102427306	0.630197	Foxp2_Foxp3	ENSMUST00000097950.9|Pde4b|ENSMUSG00000028525.17|phosphodiesterase 4B, cAMP specific
mm39_v1_chr3_+_96740534_96740572	0.629795	Foxp2_Foxp3	ENSMUST00000128789.2|Pdzk1|ENSMUSG00000038298.15|PDZ domain containing 1
mm39_v1_chrX_+_138464065_138464088	0.629736	Foxp2_Foxp3	ENSMUST00000113027.8|Rnf128|ENSMUSG00000031438.12|ring finger protein 128
mm39_v1_chr12_+_113038376_113038392	0.629394	Foxp2_Foxp3	ENSMUST00000109729.3|Tex22|ENSMUSG00000012211.14|testis expressed gene 22
mm39_v1_chr7_+_44117475_44117496	0.628554	Foxp2_Foxp3	ENSMUST00000118493.8|Josd2|ENSMUSG00000038695.14|Josephin domain containing 2
mm39_v1_chr1_+_87501721_87501768	0.621228	Foxp2_Foxp3	ENSMUST00000166259.8|Neu2|ENSMUSG00000079434.9|neuraminidase 2	ENSMUST00000172222.8|Neu2|ENSMUSG00000079434.9|neuraminidase 2	ENSMUST00000163606.8|Neu2|ENSMUSG00000079434.9|neuraminidase 2
mm39_v1_chr3_-_64252048_64252048	0.620511	Foxp2_Foxp3	ENSMUST00000234658.2|Vmn2r128|ENSMUSG00000091967.6|vomeronasal 2 receptor 128
mm39_v1_chr9_+_102594867_102594929	0.619055	Foxp2_Foxp3	ENSMUST00000035121.14|Amotl2|ENSMUSG00000032531.16|angiomotin-like 2
mm39_v1_chr1_-_87501548_87501592	0.617489	Foxp2_Foxp3	ENSMUST00000068681.12|Ngef|ENSMUSG00000026259.15|neuronal guanine nucleotide exchange factor
mm39_v1_chr15_+_25940912_25940929	0.615898	Foxp2_Foxp3	ENSMUST00000226438.2|Retreg1|ENSMUSG00000022270.17|reticulophagy regulator 1
mm39_v1_chr14_+_4230569_4230642	0.614677	Foxp2_Foxp3	ENSMUST00000090543.6|Nr1d2|ENSMUSG00000021775.12|nuclear receptor subfamily 1, group D, member 2
mm39_v1_chr16_+_43330630_43330671	0.613682	Foxp2_Foxp3	ENSMUST00000114695.3|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr16_+_43184507_43184567	0.610438	Foxp2_Foxp3	ENSMUST00000148775.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr7_+_126376099_126376256	0.609755	Foxp2_Foxp3	ENSMUST00000038614.12|Ypel3|ENSMUSG00000042675.16|yippee like 3	ENSMUST00000170882.8|Ypel3|ENSMUSG00000042675.16|yippee like 3	ENSMUST00000106359.2|Ypel3|ENSMUSG00000042675.16|yippee like 3	ENSMUST00000106357.8|Ypel3|ENSMUSG00000042675.16|yippee like 3	ENSMUST00000145762.8|Ypel3|ENSMUSG00000042675.16|yippee like 3
mm39_v1_chr11_+_70430870_70430896	0.609178	Foxp2_Foxp3	ENSMUST00000157075.8|Pld2|ENSMUSG00000020828.14|phospholipase D2
mm39_v1_chr5_+_3978032_3978178	0.608676	Foxp2_Foxp3	ENSMUST00000143365.8|Akap9|ENSMUSG00000040407.19|A kinase (PRKA) anchor protein (yotiao) 9
mm39_v1_chr6_-_39702381_39702413	0.60798	Foxp2_Foxp3	ENSMUST00000002487.15|Braf|ENSMUSG00000002413.16|Braf transforming gene
mm39_v1_chr6_+_83720022_83720076	0.604096	Foxp2_Foxp3	ENSMUST00000206911.2|Atp6v1b1|ENSMUSG00000006269.8|ATPase, H+ transporting, lysosomal V1 subunit B1	ENSMUST00000205763.2|Atp6v1b1|ENSMUSG00000006269.8|ATPase, H+ transporting, lysosomal V1 subunit B1
mm39_v1_chr17_+_85265420_85265451	0.602831	Foxp2_Foxp3	ENSMUST00000080217.14|Ppm1b|ENSMUSG00000061130.14|protein phosphatase 1B, magnesium dependent, beta isoform	ENSMUST00000112304.10|Ppm1b|ENSMUSG00000061130.14|protein phosphatase 1B, magnesium dependent, beta isoform
mm39_v1_chr11_-_84058292_84058338	0.599953	Foxp2_Foxp3	ENSMUST00000050771.8|Gm11437|ENSMUSG00000051452.9|predicted gene 11437
mm39_v1_chr15_+_25940859_25940895	0.599412	Foxp2_Foxp3	ENSMUST00000226750.2|Retreg1|ENSMUSG00000022270.17|reticulophagy regulator 1
mm39_v1_chr6_+_34686373_34686381	0.597119	Foxp2_Foxp3	ENSMUST00000115021.8|Cald1|ENSMUSG00000029761.17|caldesmon 1
mm39_v1_chr11_-_106811185_106811469	0.595455	Foxp2_Foxp3	ENSMUST00000167787.2|Smurf2|ENSMUSG00000018363.17|SMAD specific E3 ubiquitin protein ligase 2	ENSMUST00000092517.9|Smurf2|ENSMUSG00000018363.17|SMAD specific E3 ubiquitin protein ligase 2
mm39_v1_chr16_+_87350202_87350230	0.595356	Foxp2_Foxp3	ENSMUST00000026700.8|Map3k7cl|ENSMUSG00000025610.8|Map3k7 C-terminal like
mm39_v1_chr4_+_108704982_108705092	0.594725	Foxp2_Foxp3	ENSMUST00000102738.4|Kti12|ENSMUSG00000073775.5|KTI12 homolog, chromatin associated
mm39_v1_chr14_+_54413727_54413742	0.594616	Foxp2_Foxp3	ENSMUST00000103701.2|Traj41|ENSMUSG00000076889.2|T cell receptor alpha joining 41
mm39_v1_chr3_+_102981352_102981369	0.594519	Foxp2_Foxp3	ENSMUST00000176440.2|Ampd1|ENSMUSG00000070385.13|adenosine monophosphate deaminase 1
mm39_v1_chr1_+_150195158_150195200	0.590123	Foxp2_Foxp3	ENSMUST00000165062.8|Pdc|ENSMUSG00000006007.15|phosducin	ENSMUST00000191228.7|Pdc|ENSMUSG00000006007.15|phosducin	ENSMUST00000186572.7|Pdc|ENSMUSG00000006007.15|phosducin	ENSMUST00000185698.2|Pdc|ENSMUSG00000006007.15|phosducin
mm39_v1_chr6_+_40470463_40470463	0.589178	Foxp2_Foxp3	ENSMUST00000038750.7|Tas2r108|ENSMUSG00000037140.7|taste receptor, type 2, member 108
mm39_v1_chr1_+_52158599_52158660	0.587244	Foxp2_Foxp3	ENSMUST00000186574.7|Stat1|ENSMUSG00000026104.15|signal transducer and activator of transcription 1	ENSMUST00000070968.14|Stat1|ENSMUSG00000026104.15|signal transducer and activator of transcription 1	ENSMUST00000191435.7|Stat1|ENSMUSG00000026104.15|signal transducer and activator of transcription 1	ENSMUST00000186857.7|Stat1|ENSMUSG00000026104.15|signal transducer and activator of transcription 1	ENSMUST00000188681.7|Stat1|ENSMUSG00000026104.15|signal transducer and activator of transcription 1
mm39_v1_chr7_-_103674780_103674780	0.586831	Foxp2_Foxp3	ENSMUST00000218535.2|Olfr640|ENSMUSG00000066262.5|olfactory receptor 640
mm39_v1_chr2_+_19662529_19662616	0.585478	Foxp2_Foxp3	ENSMUST00000052168.6|Otud1|ENSMUSG00000043415.6|OTU domain containing 1
mm39_v1_chr1_+_82902636_82902641	0.584998	Foxp2_Foxp3	ENSMUST00000223400.2|A030014E15Rik|ENSMUSG00000113973.2|RIKEN cDNA A030014E15 gene
mm39_v1_chr16_+_95059121_95059161	0.579575	Foxp2_Foxp3	ENSMUST00000113858.3|Kcnj15|ENSMUSG00000062609.15|potassium inwardly-rectifying channel, subfamily J, member 15
mm39_v1_chr5_-_123127148_123127194	0.577995	Foxp2_Foxp3	ENSMUST00000046073.16|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr9_-_103243039_103243100	0.574924	Foxp2_Foxp3	ENSMUST00000035484.11|Cdv3|ENSMUSG00000032803.16|carnitine deficiency-associated gene expressed in ventricle 3
mm39_v1_chr2_-_73722932_73722983	0.574889	Foxp2_Foxp3	ENSMUST00000154456.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000090802.11|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000055833.12|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112007.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112016.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr1_-_138547879_138547965	0.574855	Foxp2_Foxp3	ENSMUST00000187407.7|Nek7|ENSMUSG00000026393.11|NIMA (never in mitosis gene a)-related expressed kinase 7
mm39_v1_chr3_-_37286714_37286786	0.574022	Foxp2_Foxp3	ENSMUST00000161015.2|Il21|ENSMUSG00000027718.9|interleukin 21	ENSMUST00000029273.8|Il21|ENSMUSG00000027718.9|interleukin 21
mm39_v1_chr11_+_74255497_74255497	0.572206	Foxp2_Foxp3	ENSMUST00000077794.4|Olfr412|ENSMUSG00000058275.4|olfactory receptor 412
mm39_v1_chr6_+_34686543_34686569	0.572072	Foxp2_Foxp3	ENSMUST00000031775.13|Cald1|ENSMUSG00000029761.17|caldesmon 1
mm39_v1_chr9_-_112016966_112017005	0.568099	Foxp2_Foxp3	ENSMUST00000178410.2|Arpp21|ENSMUSG00000032503.19|cyclic AMP-regulated phosphoprotein, 21	ENSMUST00000172380.10|Arpp21|ENSMUSG00000032503.19|cyclic AMP-regulated phosphoprotein, 21
mm39_v1_chr6_+_42117870_42117870	0.561873	Foxp2_Foxp3	ENSMUST00000057686.5|Tas2r139|ENSMUSG00000047102.5|taste receptor, type 2, member 139
mm39_v1_chr6_-_99073156_99073201	0.560745	Foxp2_Foxp3	ENSMUST00000175886.8|Foxp1|ENSMUSG00000030067.18|forkhead box P1
mm39_v1_chr17_-_47093566_47093603	0.558568	Foxp2_Foxp3	ENSMUST00000078286.6|Rpl7l1|ENSMUSG00000063888.8|ribosomal protein L7-like 1	ENSMUST00000233192.2|Rpl7l1|ENSMUSG00000063888.8|ribosomal protein L7-like 1	ENSMUST00000233349.2|Rpl7l1|ENSMUSG00000063888.8|ribosomal protein L7-like 1
mm39_v1_chrX_+_67722230_67722245	0.558199	Foxp2_Foxp3	ENSMUST00000114656.8|Fmr1|ENSMUSG00000000838.18|FMRP translational regulator 1
mm39_v1_chr1_+_191709329_191709349	0.557632	Foxp2_Foxp3	ENSMUST00000180463.3|Rd3|ENSMUSG00000049353.18|retinal degeneration 3	ENSMUST00000181512.8|Rd3|ENSMUSG00000049353.18|retinal degeneration 3
mm39_v1_chr6_-_41535322_41535386	0.55396	Foxp2_Foxp3	ENSMUST00000193003.2|Trbv31|ENSMUSG00000076499.4|T cell receptor beta, variable 31
mm39_v1_chr14_+_61844899_61844931	0.552661	Foxp2_Foxp3	ENSMUST00000225582.2|Kcnrg|ENSMUSG00000046168.10|potassium channel regulator	ENSMUST00000051184.10|Kcnrg|ENSMUSG00000046168.10|potassium channel regulator
mm39_v1_chr4_-_14621805_14621819	0.55074	Foxp2_Foxp3	ENSMUST00000042221.14|Slc26a7|ENSMUSG00000040569.14|solute carrier family 26, member 7
mm39_v1_chr6_+_90443293_90443382	0.549228	Foxp2_Foxp3	ENSMUST00000203607.2|Klf15|ENSMUSG00000030087.12|Kruppel-like factor 15
mm39_v1_chr7_-_37472290_37472316	0.548408	Foxp2_Foxp3	ENSMUST00000176205.8|Zfp536|ENSMUSG00000043456.18|zinc finger protein 536
mm39_v1_chr13_-_104314899_104314991	0.542759	Foxp2_Foxp3	ENSMUST00000179891.2|Trappc13|ENSMUSG00000021711.18|trafficking protein particle complex 13	ENSMUST00000022224.16|Trappc13|ENSMUSG00000021711.18|trafficking protein particle complex 13	ENSMUST00000141557.8|Trappc13|ENSMUSG00000021711.18|trafficking protein particle complex 13	ENSMUST00000133280.2|Shld3|ENSMUSG00000118537.2|shieldin complex subunit 3	ENSMUST00000144060.8|Trappc13|ENSMUSG00000021711.18|trafficking protein particle complex 13
mm39_v1_chr4_+_119590971_119590999	0.5383	Foxp2_Foxp3	ENSMUST00000084306.5|Hivep3|ENSMUSG00000028634.18|human immunodeficiency virus type I enhancer binding protein 3
mm39_v1_chr6_-_121080479_121080515	0.536218	Foxp2_Foxp3	ENSMUST00000207968.2|Mical3|ENSMUSG00000051586.18|microtubule associated monooxygenase, calponin and LIM domain containing 3
mm39_v1_chr10_-_67120959_67121093	0.533412	Foxp2_Foxp3	ENSMUST00000159002.2|Nrbf2|ENSMUSG00000075000.12|nuclear receptor binding factor 2	ENSMUST00000077839.13|Nrbf2|ENSMUSG00000075000.12|nuclear receptor binding factor 2
mm39_v1_chr4_+_52825399_52825399	0.525463	Foxp2_Foxp3	ENSMUST00000095085.2|Olfr275|ENSMUSG00000089717.3|olfactory receptor 275
mm39_v1_chr10_-_93146825_93146851	0.523848	Foxp2_Foxp3	ENSMUST00000151153.2|Elk3|ENSMUSG00000008398.17|ELK3, member of ETS oncogene family
mm39_v1_chrX_-_37653396_37653432	0.521874	Foxp2_Foxp3	ENSMUST00000016681.15|Cul4b|ENSMUSG00000031095.16|cullin 4B
mm39_v1_chrX_+_93278588_93278603	0.516822	Foxp2_Foxp3	ENSMUST00000096369.10|Klhl15|ENSMUSG00000043929.17|kelch-like 15	ENSMUST00000113911.9|Klhl15|ENSMUSG00000043929.17|kelch-like 15
mm39_v1_chr3_-_101743539_101743554	0.516444	Foxp2_Foxp3	ENSMUST00000061831.11|Mab21l3|ENSMUSG00000044313.14|mab-21-like 3
mm39_v1_chr5_+_142615292_142615348	0.515539	Foxp2_Foxp3	ENSMUST00000036872.16|Wipi2|ENSMUSG00000029578.16|WD repeat domain, phosphoinositide interacting 2	ENSMUST00000110778.2|Wipi2|ENSMUSG00000029578.16|WD repeat domain, phosphoinositide interacting 2
mm39_v1_chr13_+_23930717_23930746	0.514298	Foxp2_Foxp3	ENSMUST00000099703.5|H2bc3|ENSMUSG00000075031.5|H2B clustered histone 3
mm39_v1_chr7_+_16044336_16044380	0.508655	Foxp2_Foxp3	ENSMUST00000136781.2|Bbc3|ENSMUSG00000002083.14|BCL2 binding component 3
mm39_v1_chr13_-_21823691_21823691	0.506839	Foxp2_Foxp3	ENSMUST00000043081.3|Olfr11|ENSMUSG00000036658.5|olfactory receptor 11
mm39_v1_chr1_+_87332638_87332686	0.506752	Foxp2_Foxp3	ENSMUST00000173152.2|Gigyf2|ENSMUSG00000048000.16|GRB10 interacting GYF protein 2	ENSMUST00000173663.2|Gigyf2|ENSMUSG00000048000.16|GRB10 interacting GYF protein 2
mm39_v1_chr9_+_39853511_39853511	0.503475	Foxp2_Foxp3	ENSMUST00000062833.6|Olfr974|ENSMUSG00000051493.8|olfactory receptor 974
mm39_v1_chr8_+_47192911_47193063	0.502758	Foxp2_Foxp3	ENSMUST00000208433.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2
mm39_v1_chr11_-_82719850_82719869	0.500189	Foxp2_Foxp3	ENSMUST00000021036.13|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein	ENSMUST00000074515.11|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein	ENSMUST00000103218.3|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein
mm39_v1_chr11_+_110289941_110289982	0.499608	Foxp2_Foxp3	ENSMUST00000020949.12|Map2k6|ENSMUSG00000020623.12|mitogen-activated protein kinase kinase 6	ENSMUST00000100260.2|Map2k6|ENSMUSG00000020623.12|mitogen-activated protein kinase kinase 6
mm39_v1_chr2_-_52448552_52448583	0.498523	Foxp2_Foxp3	ENSMUST00000102760.10|Cacnb4|ENSMUSG00000017412.16|calcium channel, voltage-dependent, beta 4 subunit	ENSMUST00000102761.9|Cacnb4|ENSMUSG00000017412.16|calcium channel, voltage-dependent, beta 4 subunit
mm39_v1_chr3_+_30800474_30800489	0.495674	Foxp2_Foxp3	ENSMUST00000108262.10|Samd7|ENSMUSG00000051860.14|sterile alpha motif domain containing 7
mm39_v1_chr1_+_156443472_156443503	0.491613	Foxp2_Foxp3	ENSMUST00000190749.2|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm39_v1_chr3_-_75359125_75359125	0.491364	Foxp2_Foxp3	ENSMUST00000204341.3|Wdr49|ENSMUSG00000104301.4|WD repeat domain 49
mm39_v1_chr1_+_16758731_16758742	0.489583	Foxp2_Foxp3	ENSMUST00000190366.2|Ly96|ENSMUSG00000025779.11|lymphocyte antigen 96
mm39_v1_chr1_+_16758629_16758715	0.488714	Foxp2_Foxp3	ENSMUST00000026881.11|Ly96|ENSMUSG00000025779.11|lymphocyte antigen 96
mm39_v1_chr6_+_41192984_41193007	0.486755	Foxp2_Foxp3	ENSMUST00000193997.6|Trbv23|ENSMUSG00000076478.8|T cell receptor beta, variable V23	ENSMUST00000103279.3|Trbv23|ENSMUSG00000076478.8|T cell receptor beta, variable V23
mm39_v1_chrX_+_106193060_106193089	0.484556	Foxp2_Foxp3	ENSMUST00000125676.8|P2ry10b|ENSMUSG00000054293.11|purinergic receptor P2Y, G-protein coupled 10B	ENSMUST00000180182.2|P2ry10b|ENSMUSG00000054293.11|purinergic receptor P2Y, G-protein coupled 10B
mm39_v1_chr9_+_32305259_32305281	0.48388	Foxp2_Foxp3	ENSMUST00000172015.3|Kcnj1|ENSMUSG00000041248.10|potassium inwardly-rectifying channel, subfamily J, member 1
mm39_v1_chr12_-_31549538_31549615	0.481566	Foxp2_Foxp3	ENSMUST00000064240.14|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000185739.8|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000188326.3|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000101499.10|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000085487.12|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1
mm39_v1_chr18_+_77153332_77153515	0.479315	Foxp2_Foxp3	ENSMUST00000114776.4|Pias2|ENSMUSG00000025423.17|protein inhibitor of activated STAT 2	ENSMUST00000168882.9|Pias2|ENSMUSG00000025423.17|protein inhibitor of activated STAT 2
mm39_v1_chr7_+_100435548_100435582	0.477725	Foxp2_Foxp3	ENSMUST00000216021.2|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A
mm39_v1_chr5_-_146158201_146158230	0.476972	Foxp2_Foxp3	ENSMUST00000161574.8|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6
mm39_v1_chr14_+_54436898_54436898	0.471065	Foxp2_Foxp3	ENSMUST00000103721.3|Traj20|ENSMUSG00000076909.3|T cell receptor alpha joining 20
mm39_v1_chr14_+_53210216_53210216	0.470762	Foxp2_Foxp3	ENSMUST00000103599.3|Trav3d-3|ENSMUSG00000093953.3|T cell receptor alpha variable 3D-3
mm39_v1_chr13_-_98951627_98951716	0.469869	Foxp2_Foxp3	ENSMUST00000224992.2|Fcho2|ENSMUSG00000041685.17|FCH domain only 2	ENSMUST00000225840.2|Fcho2|ENSMUSG00000041685.17|FCH domain only 2
mm39_v1_chrX_+_67722147_67722159	0.469404	Foxp2_Foxp3	ENSMUST00000088546.12|Fmr1|ENSMUSG00000000838.18|FMRP translational regulator 1
mm39_v1_chr14_+_54423447_54423558	0.469397	Foxp2_Foxp3	ENSMUST00000103709.2|Traj32|ENSMUSG00000076897.2|T cell receptor alpha joining 32
mm39_v1_chr2_+_26471062_26471074	0.465509	Foxp2_Foxp3	ENSMUST00000238951.2|Egfl7|ENSMUSG00000026921.21|EGF-like domain 7	ENSMUST00000166920.10|Egfl7|ENSMUSG00000026921.21|EGF-like domain 7
mm39_v1_chr9_+_102593871_102594001	0.465263	Foxp2_Foxp3	ENSMUST00000145913.2|Amotl2|ENSMUSG00000032531.16|angiomotin-like 2	ENSMUST00000153965.8|Amotl2|ENSMUSG00000032531.16|angiomotin-like 2
mm39_v1_chr12_-_98703664_98703774	0.463076	Foxp2_Foxp3	ENSMUST00000170188.8|Ptpn21|ENSMUSG00000021009.16|protein tyrosine phosphatase, non-receptor type 21
mm39_v1_chr4_-_21767116_21767217	0.46233	Foxp2_Foxp3	ENSMUST00000029915.6|Tstd3|ENSMUSG00000028251.6|thiosulfate sulfurtransferase (rhodanese)-like domain containing 3
mm39_v1_chr8_+_46081213_46081258	0.460707	Foxp2_Foxp3	ENSMUST00000130850.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr11_+_87457544_87457628	0.459027	Foxp2_Foxp3	ENSMUST00000060360.7|Septin4|ENSMUSG00000020486.20|septin 4
mm39_v1_chr12_-_91712783_91712863	0.4575	Foxp2_Foxp3	ENSMUST00000166967.2|Ston2|ENSMUSG00000020961.16|stonin 2
mm39_v1_chr16_-_90866032_90866081	0.457395	Foxp2_Foxp3	ENSMUST00000035689.8|4932438H23Rik|ENSMUSG00000039851.12|RIKEN cDNA 4932438H23 gene	ENSMUST00000114076.2|4932438H23Rik|ENSMUSG00000039851.12|RIKEN cDNA 4932438H23 gene
mm39_v1_chr10_-_66932685_66932738	0.45701	Foxp2_Foxp3	ENSMUST00000020023.9|Reep3|ENSMUSG00000019873.9|receptor accessory protein 3
mm39_v1_chr1_+_171157137_171157221	0.455208	Foxp2_Foxp3	ENSMUST00000142063.8|Dedd|ENSMUSG00000013973.13|death effector domain-containing	ENSMUST00000129116.8|Dedd|ENSMUSG00000013973.13|death effector domain-containing
mm39_v1_chr6_+_83719966_83719977	0.451651	Foxp2_Foxp3	ENSMUST00000006431.8|Atp6v1b1|ENSMUSG00000006269.8|ATPase, H+ transporting, lysosomal V1 subunit B1
mm39_v1_chr4_-_131664478_131664526	0.4514	Foxp2_Foxp3	ENSMUST00000155990.8|Epb41|ENSMUSG00000028906.18|erythrocyte membrane protein band 4.1
mm39_v1_chr1_+_61017057_61017096	0.451383	Foxp2_Foxp3	ENSMUST00000027162.12|Icos|ENSMUSG00000026009.15|inducible T cell co-stimulator	ENSMUST00000102827.4|Icos|ENSMUSG00000026009.15|inducible T cell co-stimulator
mm39_v1_chr7_-_67913949_67913981	0.450781	Foxp2_Foxp3	ENSMUST00000032770.4|Pgpep1l|ENSMUSG00000030553.4|pyroglutamyl-peptidase I-like	ENSMUST00000207874.2|Pgpep1l|ENSMUSG00000030553.4|pyroglutamyl-peptidase I-like
mm39_v1_chrM_+_11735_11751	0.450468	Foxp2_Foxp3	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm39_v1_chr2_-_57942844_57942881	0.448456	Foxp2_Foxp3	ENSMUST00000090940.6|Ermn|ENSMUSG00000026830.10|ermin, ERM-like protein
mm39_v1_chr19_+_25649767_25649789	0.448193	Foxp2_Foxp3	ENSMUST00000053068.7|Dmrt2|ENSMUSG00000048138.11|doublesex and mab-3 related transcription factor 2
mm39_v1_chr6_+_15185562_15185595	0.447901	Foxp2_Foxp3	ENSMUST00000137628.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr18_+_34891941_34891959	0.447871	Foxp2_Foxp3	ENSMUST00000049281.12|Fam53c|ENSMUSG00000034300.18|family with sequence similarity 53, member C
mm39_v1_chr5_+_149942140_149942264	0.444644	Foxp2_Foxp3	ENSMUST00000065745.10|Rxfp2|ENSMUSG00000053368.14|relaxin/insulin-like family peptide receptor 2	ENSMUST00000110496.5|Rxfp2|ENSMUSG00000053368.14|relaxin/insulin-like family peptide receptor 2	ENSMUST00000201612.2|Rxfp2|ENSMUSG00000053368.14|relaxin/insulin-like family peptide receptor 2
mm39_v1_chr11_-_95037089_95037089	0.442882	Foxp2_Foxp3	ENSMUST00000021241.8|Dlx4|ENSMUSG00000020871.9|distal-less homeobox 4
mm39_v1_chr10_+_79951613_79951661	0.442262	Foxp2_Foxp3	ENSMUST00000003152.14|Stk11|ENSMUSG00000003068.18|serine/threonine kinase 11
mm39_v1_chr8_-_32408786_32408830	0.44175	Foxp2_Foxp3	ENSMUST00000239000.2|Nrg1|ENSMUSG00000118541.2|neuregulin 1
mm39_v1_chr6_-_139987135_139987192	0.441635	Foxp2_Foxp3	ENSMUST00000032356.13|Plcz1|ENSMUSG00000030230.16|phospholipase C, zeta 1
mm39_v1_chr17_+_47815998_47816009	0.440546	Foxp2_Foxp3	ENSMUST00000183210.2|Ccnd3|ENSMUSG00000034165.17|cyclin D3
mm39_v1_chr8_+_106785434_106785472	0.440525	Foxp2_Foxp3	ENSMUST00000212742.2|Nfatc3|ENSMUSG00000031902.11|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	ENSMUST00000211991.2|Nfatc3|ENSMUSG00000031902.11|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
mm39_v1_chr14_-_62998561_62998570	0.439222	Foxp2_Foxp3	ENSMUST00000053959.7|Ints6|ENSMUSG00000035161.8|integrator complex subunit 6	ENSMUST00000223585.2|Ints6|ENSMUSG00000035161.8|integrator complex subunit 6
mm39_v1_chr5_-_87847268_87847286	0.437301	Foxp2_Foxp3	ENSMUST00000196869.5|Csn2|ENSMUSG00000063157.10|casein beta	ENSMUST00000199624.5|Csn2|ENSMUSG00000063157.10|casein beta	ENSMUST00000198057.5|Csn2|ENSMUSG00000063157.10|casein beta	ENSMUST00000082370.10|Csn2|ENSMUSG00000063157.10|casein beta
mm39_v1_chr14_+_53270305_53270305	0.435951	Foxp2_Foxp3	ENSMUST00000179512.3|Trav13d-3|ENSMUSG00000095643.3|T cell receptor alpha variable 13D-3
mm39_v1_chr7_+_44117404_44117438	0.435659	Foxp2_Foxp3	ENSMUST00000035844.11|Josd2|ENSMUSG00000038695.14|Josephin domain containing 2
mm39_v1_chrX_+_100298134_100298186	0.433016	Foxp2_Foxp3	ENSMUST00000062000.6|Foxo4|ENSMUSG00000042903.9|forkhead box O4
mm39_v1_chr6_+_104469751_104469926	0.430831	Foxp2_Foxp3	ENSMUST00000161446.2|Cntn6|ENSMUSG00000030092.15|contactin 6	ENSMUST00000161070.8|Cntn6|ENSMUSG00000030092.15|contactin 6	ENSMUST00000089215.12|Cntn6|ENSMUSG00000030092.15|contactin 6
mm39_v1_chr19_+_8718777_8718820	0.430597	Foxp2_Foxp3	ENSMUST00000176381.8|Stx5a|ENSMUSG00000010110.18|syntaxin 5A
mm39_v1_chr10_+_128067964_128068003	0.429522	Foxp2_Foxp3	ENSMUST00000125289.8|Timeless|ENSMUSG00000039994.16|timeless circadian clock 1	ENSMUST00000105242.8|Timeless|ENSMUSG00000039994.16|timeless circadian clock 1
mm39_v1_chr12_-_110662256_110662385	0.424558	Foxp2_Foxp3	ENSMUST00000149189.2|Hsp90aa1|ENSMUSG00000021270.14|heat shock protein 90, alpha (cytosolic), class A member 1
mm39_v1_chr6_-_71376277_71376332	0.423329	Foxp2_Foxp3	ENSMUST00000149415.2|Rmnd5a|ENSMUSG00000002222.15|required for meiotic nuclear division 5 homolog A
mm39_v1_chr16_+_65320163_65320200	0.423171	Foxp2_Foxp3	ENSMUST00000184525.2|Pou1f1|ENSMUSG00000004842.19|POU domain, class 1, transcription factor 1
mm39_v1_chr17_-_25105277_25105327	0.423082	Foxp2_Foxp3	ENSMUST00000234583.2|Nubp2|ENSMUSG00000039183.7|nucleotide binding protein 2	ENSMUST00000234968.2|Nubp2|ENSMUSG00000039183.7|nucleotide binding protein 2	ENSMUST00000044252.7|Nubp2|ENSMUSG00000039183.7|nucleotide binding protein 2
mm39_v1_chr18_+_82928782_82928803	0.42255	Foxp2_Foxp3	ENSMUST00000235793.2|Zfp516|ENSMUSG00000058881.14|zinc finger protein 516
mm39_v1_chr1_+_52158721_52158783	0.422096	Foxp2_Foxp3	ENSMUST00000186057.7|Stat1|ENSMUSG00000026104.15|signal transducer and activator of transcription 1
mm39_v1_chr9_+_57818243_57818334	0.420825	Foxp2_Foxp3	ENSMUST00000216925.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000163329.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000213654.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000217132.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000216841.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000214086.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)
mm39_v1_chr1_+_177272215_177272235	0.418372	Foxp2_Foxp3	ENSMUST00000192851.2|Zbtb18|ENSMUSG00000063659.12|zinc finger and BTB domain containing 18	ENSMUST00000193480.2|Zbtb18|ENSMUSG00000063659.12|zinc finger and BTB domain containing 18	ENSMUST00000195388.2|Zbtb18|ENSMUSG00000063659.12|zinc finger and BTB domain containing 18
mm39_v1_chr9_-_45818196_45818219	0.417943	Foxp2_Foxp3	ENSMUST00000160699.9|Rnf214|ENSMUSG00000042790.17|ring finger protein 214
mm39_v1_chr15_+_25940781_25940818	0.416138	Foxp2_Foxp3	ENSMUST00000227275.2|Retreg1|ENSMUSG00000022270.17|reticulophagy regulator 1
mm39_v1_chr3_+_84500854_84500881	0.411509	Foxp2_Foxp3	ENSMUST00000062623.4|Tigd4|ENSMUSG00000047819.4|tigger transposable element derived 4
mm39_v1_chr1_-_30912662_30912738	0.410366	Foxp2_Foxp3	ENSMUST00000186733.7|Phf3|ENSMUSG00000048874.16|PHD finger protein 3
mm39_v1_chr3_+_102981326_102981349	0.408162	Foxp2_Foxp3	ENSMUST00000090715.13|Ampd1|ENSMUSG00000070385.13|adenosine monophosphate deaminase 1	ENSMUST00000155034.6|Ampd1|ENSMUSG00000070385.13|adenosine monophosphate deaminase 1
mm39_v1_chr11_+_9143415_9143451	0.40796	Foxp2_Foxp3	ENSMUST00000151522.2|Abca13|ENSMUSG00000004668.15|ATP-binding cassette, sub-family A (ABC1), member 13
mm39_v1_chr13_+_36301331_36301395	0.40487	Foxp2_Foxp3	ENSMUST00000021857.13|Fars2|ENSMUSG00000021420.14|phenylalanine-tRNA synthetase 2 (mitochondrial)
mm39_v1_chr1_-_152500963_152500971	0.403123	Foxp2_Foxp3	ENSMUST00000027760.14|Rgl1|ENSMUSG00000026482.14|ral guanine nucleotide dissociation stimulator,-like 1
mm39_v1_chr6_-_72876686_72876826	0.402126	Foxp2_Foxp3	ENSMUST00000206378.2|Kcmf1|ENSMUSG00000055239.11|potassium channel modulatory factor 1
mm39_v1_chr11_-_88608958_88609022	0.401767	Foxp2_Foxp3	ENSMUST00000107908.2|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr7_-_89630141_89630219	0.39905	Foxp2_Foxp3	ENSMUST00000238981.2|Eed|ENSMUSG00000030619.11|embryonic ectoderm development	ENSMUST00000208977.2|Eed|ENSMUSG00000030619.11|embryonic ectoderm development	ENSMUST00000107234.3|Eed|ENSMUSG00000030619.11|embryonic ectoderm development
mm39_v1_chr14_+_52680447_52680508	0.397107	Foxp2_Foxp3	ENSMUST00000205900.3|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509	ENSMUST00000215030.2|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509	ENSMUST00000206100.2|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509	ENSMUST00000206718.2|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509
mm39_v1_chr5_+_91175323_91175351	0.396591	Foxp2_Foxp3	ENSMUST00000202724.4|Epgn|ENSMUSG00000035020.12|epithelial mitogen	ENSMUST00000041516.9|Epgn|ENSMUSG00000035020.12|epithelial mitogen
mm39_v1_chr11_-_99884818_99884821	0.396208	Foxp2_Foxp3	ENSMUST00000105049.2|Krtap17-1|ENSMUSG00000078252.2|keratin associated protein 17-1
mm39_v1_chr19_+_5927876_5927899	0.393638	Foxp2_Foxp3	ENSMUST00000235340.2|Slc25a45|ENSMUSG00000024818.16|solute carrier family 25, member 45
mm39_v1_chr2_-_101451383_101451410	0.393141	Foxp2_Foxp3	ENSMUST00000090513.11|Iftap|ENSMUSG00000027165.17|intraflagellar transport associated protein
mm39_v1_chr7_-_38227617_38227617	0.391623	Foxp2_Foxp3	ENSMUST00000079759.6|Gm5591|ENSMUSG00000060565.6|predicted gene 5591
mm39_v1_chrX_+_56088434_56088434	0.3906	Foxp2_Foxp3	ENSMUST00000033464.4|Brs3|ENSMUSG00000031130.4|bombesin-like receptor 3
mm39_v1_chrX_+_106193167_106193221	0.390056	Foxp2_Foxp3	ENSMUST00000137107.2|P2ry10b|ENSMUSG00000054293.11|purinergic receptor P2Y, G-protein coupled 10B	ENSMUST00000067249.3|P2ry10b|ENSMUSG00000054293.11|purinergic receptor P2Y, G-protein coupled 10B
mm39_v1_chr7_+_119499322_119499331	0.388974	Foxp2_Foxp3	ENSMUST00000106516.2|Lyrm1|ENSMUSG00000030922.13|LYR motif containing 1
mm39_v1_chr6_+_136931519_136931527	0.388563	Foxp2_Foxp3	ENSMUST00000137768.2|Pde6h|ENSMUSG00000064330.10|phosphodiesterase 6H, cGMP-specific, cone, gamma
mm39_v1_chr15_-_5137975_5138050	0.386527	Foxp2_Foxp3	ENSMUST00000118365.3|Card6|ENSMUSG00000041849.8|caspase recruitment domain family, member 6
mm39_v1_chr11_+_49170977_49170977	0.38542	Foxp2_Foxp3	ENSMUST00000078932.2|Olfr1393|ENSMUSG00000059864.3|olfactory receptor 1393
mm39_v1_chr8_-_25528972_25528986	0.384294	Foxp2_Foxp3	ENSMUST00000084031.6|Htra4|ENSMUSG00000037406.8|HtrA serine peptidase 4
mm39_v1_chr17_+_37253916_37253947	0.383623	Foxp2_Foxp3	ENSMUST00000173072.2|Rnf39|ENSMUSG00000036492.13|ring finger protein 39
mm39_v1_chr14_-_70666821_70666866	0.383554	Foxp2_Foxp3	ENSMUST00000226229.2|Piwil2|ENSMUSG00000033644.6|piwi-like RNA-mediated gene silencing 2
mm39_v1_chr8_+_55003359_55003375	0.382562	Foxp2_Foxp3	ENSMUST00000033918.4|Asb5|ENSMUSG00000031519.5|ankyrin repeat and SOCs box-containing 5
mm39_v1_chrX_-_23151771_23151817	0.379205	Foxp2_Foxp3	ENSMUST00000115319.9|Klhl13|ENSMUSG00000036782.14|kelch-like 13
mm39_v1_chr6_+_83985897_83985931	0.378749	Foxp2_Foxp3	ENSMUST00000168387.8|Dysf|ENSMUSG00000033788.16|dysferlin
mm39_v1_chr2_+_153716958_153716965	0.378463	Foxp2_Foxp3	ENSMUST00000028983.3|Bpifb2|ENSMUSG00000027481.3|BPI fold containing family B, member 2
mm39_v1_chr18_+_52748978_52749068	0.377916	Foxp2_Foxp3	ENSMUST00000072666.4|Zfp474|ENSMUSG00000046886.7|zinc finger protein 474	ENSMUST00000209270.2|Zfp474|ENSMUSG00000046886.7|zinc finger protein 474
mm39_v1_chr5_-_137529465_137529559	0.376182	Foxp2_Foxp3	ENSMUST00000150063.9|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2
mm39_v1_chr9_-_37627519_37627546	0.374639	Foxp2_Foxp3	ENSMUST00000215727.2|Olfr160|ENSMUSG00000061165.10|olfactory receptor 160	ENSMUST00000211952.3|Olfr160|ENSMUSG00000061165.10|olfactory receptor 160
mm39_v1_chr19_+_4905158_4905298	0.374151	Foxp2_Foxp3	ENSMUST00000119694.3|Ctsf|ENSMUSG00000083282.4|cathepsin F	ENSMUST00000237504.2|Ctsf|ENSMUSG00000083282.4|cathepsin F	ENSMUST00000237011.2|Ctsf|ENSMUSG00000083282.4|cathepsin F
mm39_v1_chr6_-_28133128_28133128	0.372707	Foxp2_Foxp3	ENSMUST00000132755.2|Grm8|ENSMUSG00000024211.16|glutamate receptor, metabotropic 8
mm39_v1_chrX_+_93278526_93278578	0.371185	Foxp2_Foxp3	ENSMUST00000113908.8|Klhl15|ENSMUSG00000043929.17|kelch-like 15	ENSMUST00000113916.10|Klhl15|ENSMUSG00000043929.17|kelch-like 15
mm39_v1_chrX_+_7775781_7775781	0.367904	Foxp2_Foxp3	ENSMUST00000086274.3|Gm10490|ENSMUSG00000073290.2|predicted gene 10490
mm39_v1_chr8_+_75760301_75760381	0.365005	Foxp2_Foxp3	ENSMUST00000165630.3|Tom1|ENSMUSG00000042870.16|target of myb1 trafficking protein	ENSMUST00000212651.2|Tom1|ENSMUSG00000042870.16|target of myb1 trafficking protein	ENSMUST00000212388.2|Tom1|ENSMUSG00000042870.16|target of myb1 trafficking protein	ENSMUST00000212299.2|Tom1|ENSMUSG00000042870.16|target of myb1 trafficking protein	ENSMUST00000078847.13|Tom1|ENSMUSG00000042870.16|target of myb1 trafficking protein	ENSMUST00000211869.2|Tom1|ENSMUSG00000042870.16|target of myb1 trafficking protein
mm39_v1_chr7_+_44117511_44117547	0.364804	Foxp2_Foxp3	ENSMUST00000121922.3|Josd2|ENSMUSG00000038695.14|Josephin domain containing 2	ENSMUST00000208117.2|Josd2|ENSMUSG00000038695.14|Josephin domain containing 2
mm39_v1_chr2_+_146697746_146697845	0.362998	Foxp2_Foxp3	ENSMUST00000099278.9|Kiz|ENSMUSG00000074749.11|kizuna centrosomal protein	ENSMUST00000156232.2|Kiz|ENSMUSG00000074749.11|kizuna centrosomal protein
mm39_v1_chr1_-_160898181_160898244	0.362508	Foxp2_Foxp3	ENSMUST00000035430.4|Dars2|ENSMUSG00000026709.11|aspartyl-tRNA synthetase 2 (mitochondrial)
mm39_v1_chr10_+_29020055_29020162	0.361398	Foxp2_Foxp3	ENSMUST00000216757.2|Soga3|ENSMUSG00000038916.8|SOGA family member 3
mm39_v1_chr5_-_146157711_146157801	0.359888	Foxp2_Foxp3	ENSMUST00000169407.9|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6	ENSMUST00000161331.8|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6	ENSMUST00000159074.3|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6	ENSMUST00000067837.10|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6
mm39_v1_chr2_-_104542467_104542525	0.35618	Foxp2_Foxp3	ENSMUST00000111118.8|Tcp11l1|ENSMUSG00000027175.11|t-complex 11 like 1	ENSMUST00000028597.4|Tcp11l1|ENSMUSG00000027175.11|t-complex 11 like 1
mm39_v1_chr5_+_64969679_64969727	0.356156	Foxp2_Foxp3	ENSMUST00000166409.6|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)	ENSMUST00000197879.2|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr10_-_63257568_63257568	0.35595	Foxp2_Foxp3	ENSMUST00000054760.6|Gm7075|ENSMUSG00000048185.6|predicted gene 7075
mm39_v1_chr2_-_111908072_111908188	0.354328	Foxp2_Foxp3	ENSMUST00000213577.2|Olfr1313|ENSMUSG00000074946.6|olfactory receptor 1313	ENSMUST00000216071.2|Olfr1313|ENSMUSG00000074946.6|olfactory receptor 1313
mm39_v1_chr15_+_28203872_28203898	0.354116	Foxp2_Foxp3	ENSMUST00000067048.8|Dnah5|ENSMUSG00000022262.9|dynein, axonemal, heavy chain 5
mm39_v1_chr8_-_64659004_64659045	0.346278	Foxp2_Foxp3	ENSMUST00000066166.6|Tll1|ENSMUSG00000053626.6|tolloid-like
mm39_v1_chr18_+_13139992_13140094	0.346164	Foxp2_Foxp3	ENSMUST00000041676.3|Hrh4|ENSMUSG00000037346.6|histamine receptor H4	ENSMUST00000234084.2|Hrh4|ENSMUSG00000037346.6|histamine receptor H4	ENSMUST00000234565.2|Hrh4|ENSMUSG00000037346.6|histamine receptor H4
mm39_v1_chr3_+_101917455_101917487	0.344016	Foxp2_Foxp3	ENSMUST00000066187.6|Nhlh2|ENSMUSG00000048540.9|nescient helix loop helix 2	ENSMUST00000198675.2|Nhlh2|ENSMUSG00000048540.9|nescient helix loop helix 2
mm39_v1_chrX_+_150303650_150303677	0.343911	Foxp2_Foxp3	ENSMUST00000112666.8|Phf8|ENSMUSG00000041229.16|PHD finger protein 8	ENSMUST00000112662.9|Phf8|ENSMUSG00000041229.16|PHD finger protein 8	ENSMUST00000168501.8|Phf8|ENSMUSG00000041229.16|PHD finger protein 8
mm39_v1_chr2_+_153742294_153742315	0.343265	Foxp2_Foxp3	ENSMUST00000088955.12|Bpifb6|ENSMUSG00000068009.12|BPI fold containing family B, member 6	ENSMUST00000135501.3|Bpifb6|ENSMUSG00000068009.12|BPI fold containing family B, member 6
mm39_v1_chr6_+_14901343_14901363	0.340115	Foxp2_Foxp3	ENSMUST00000115477.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr12_-_54742597_54742682	0.334625	Foxp2_Foxp3	ENSMUST00000110713.10|Eapp|ENSMUSG00000054302.16|E2F-associated phosphoprotein	ENSMUST00000162106.8|Eapp|ENSMUSG00000054302.16|E2F-associated phosphoprotein	ENSMUST00000160085.2|Eapp|ENSMUSG00000054302.16|E2F-associated phosphoprotein	ENSMUST00000161592.8|Eapp|ENSMUSG00000054302.16|E2F-associated phosphoprotein	ENSMUST00000163433.8|Eapp|ENSMUSG00000054302.16|E2F-associated phosphoprotein	ENSMUST00000067272.9|Eapp|ENSMUSG00000054302.16|E2F-associated phosphoprotein
mm39_v1_chr19_+_8718837_8718867	0.332895	Foxp2_Foxp3	ENSMUST00000177373.8|Stx5a|ENSMUSG00000010110.18|syntaxin 5A	ENSMUST00000010254.16|Stx5a|ENSMUSG00000010110.18|syntaxin 5A
mm39_v1_chr5_+_115373895_115373895	0.332867	Foxp2_Foxp3	ENSMUST00000081497.13|Pop5|ENSMUSG00000060152.15|processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
mm39_v1_chr6_-_28133324_28133324	0.330816	Foxp2_Foxp3	ENSMUST00000131897.2|Grm8|ENSMUSG00000024211.16|glutamate receptor, metabotropic 8
mm39_v1_chr15_-_101441254_101441259	0.330271	Foxp2_Foxp3	ENSMUST00000023720.8|Krt84|ENSMUSG00000044294.9|keratin 84
mm39_v1_chr2_+_76480606_76480627	0.328653	Foxp2_Foxp3	ENSMUST00000099986.3|Pjvk|ENSMUSG00000075267.10|pejvakin
mm39_v1_chr4_-_128699838_128699966	0.327911	Foxp2_Foxp3	ENSMUST00000106072.9|Zfp362|ENSMUSG00000028799.16|zinc finger protein 362	ENSMUST00000170934.3|Zfp362|ENSMUSG00000028799.16|zinc finger protein 362
mm39_v1_chr3_+_125197722_125197780	0.32657	Foxp2_Foxp3	ENSMUST00000173932.8|Ndst4|ENSMUSG00000027971.17|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm39_v1_chr13_-_40441487_40441487	0.324696	Foxp2_Foxp3	ENSMUST00000054635.8|Ofcc1|ENSMUSG00000047094.10|orofacial cleft 1 candidate 1
mm39_v1_chr17_-_34337446_34337475	0.32249	Foxp2_Foxp3	ENSMUST00000095347.13|Brd2|ENSMUSG00000024335.21|bromodomain containing 2
mm39_v1_chr4_+_11579648_11579674	0.321682	Foxp2_Foxp3	ENSMUST00000180239.2|Fsbp|ENSMUSG00000094595.2|fibrinogen silencer binding protein
mm39_v1_chr14_-_71004019_71004088	0.321127	Foxp2_Foxp3	ENSMUST00000167242.8|Xpo7|ENSMUSG00000022100.15|exportin 7
mm39_v1_chr1_-_4566619_4566643	0.319492	Foxp2_Foxp3	ENSMUST00000192913.2|Sox17|ENSMUSG00000025902.14|SRY (sex determining region Y)-box 17	ENSMUST00000027035.10|Sox17|ENSMUSG00000025902.14|SRY (sex determining region Y)-box 17
mm39_v1_chrX_+_20529137_20529148	0.317702	Foxp2_Foxp3	ENSMUST00000001989.9|Uba1|ENSMUSG00000001924.16|ubiquitin-like modifier activating enzyme 1
mm39_v1_chr14_-_52728503_52728503	0.316686	Foxp2_Foxp3	ENSMUST00000073571.6|Olfr1507|ENSMUSG00000059887.8|olfactory receptor 1507
mm39_v1_chr13_-_93636224_93636333	0.313848	Foxp2_Foxp3	ENSMUST00000220513.2|Jmy|ENSMUSG00000021690.11|junction-mediating and regulatory protein	ENSMUST00000065537.9|Jmy|ENSMUSG00000021690.11|junction-mediating and regulatory protein
mm39_v1_chr14_-_96756503_96756538	0.311377	Foxp2_Foxp3	ENSMUST00000022666.9|Klhl1|ENSMUSG00000022076.11|kelch-like 1
mm39_v1_chr4_-_110148081_110148110	0.310449	Foxp2_Foxp3	ENSMUST00000142722.2|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4
mm39_v1_chrX_+_70707271_70707277	0.309553	Foxp2_Foxp3	ENSMUST00000070449.6|Gpr50|ENSMUSG00000056380.14|G-protein-coupled receptor 50
mm39_v1_chr6_+_113214804_113214836	0.30861	Foxp2_Foxp3	ENSMUST00000113146.9|Mtmr14|ENSMUSG00000030269.15|myotubularin related protein 14
mm39_v1_chr3_-_89008406_89008406	0.307504	Foxp2_Foxp3	ENSMUST00000200659.2|Gm43738|ENSMUSG00000105204.2|predicted gene 43738
mm39_v1_chr18_+_48179711_48179714	0.304818	Foxp2_Foxp3	ENSMUST00000235307.2|Eno1b|ENSMUSG00000059040.6|enolase 1B, retrotransposed
mm39_v1_chr9_-_108526548_108526605	0.300833	Foxp2_Foxp3	ENSMUST00000013338.14|Arih2|ENSMUSG00000064145.13|ariadne RBR E3 ubiquitin protein ligase 2	ENSMUST00000193197.6|Arih2|ENSMUSG00000064145.13|ariadne RBR E3 ubiquitin protein ligase 2
mm39_v1_chr6_-_139478919_139478974	0.300398	Foxp2_Foxp3	ENSMUST00000170650.3|Rergl|ENSMUSG00000092164.3|RERG/RAS-like
mm39_v1_chr3_-_64049349_64049349	0.297058	Foxp2_Foxp3	ENSMUST00000177151.9|Vmn2r2|ENSMUSG00000043897.14|vomeronasal 2, receptor 2
mm39_v1_chr11_+_68779372_68779388	0.295404	Foxp2_Foxp3	ENSMUST00000065213.5|Rnf222|ENSMUSG00000046490.8|ring finger protein 222
mm39_v1_chr1_-_4566553_4566612	0.293519	Foxp2_Foxp3	ENSMUST00000191647.2|Sox17|ENSMUSG00000025902.14|SRY (sex determining region Y)-box 17	ENSMUST00000116652.8|Sox17|ENSMUSG00000025902.14|SRY (sex determining region Y)-box 17
mm39_v1_chr9_+_37829844_37829844	0.293049	Foxp2_Foxp3	ENSMUST00000212878.2|Olfr878|ENSMUSG00000066747.7|olfactory receptor 878	ENSMUST00000086061.4|Olfr878|ENSMUSG00000066747.7|olfactory receptor 878
mm39_v1_chr4_-_88798438_88798465	0.292282	Foxp2_Foxp3	ENSMUST00000056014.3|Ifne|ENSMUSG00000045364.3|interferon epsilon
mm39_v1_chr15_-_101459092_101459102	0.291313	Foxp2_Foxp3	ENSMUST00000023713.10|Krt82|ENSMUSG00000049548.10|keratin 82
mm39_v1_chr10_-_23226034_23226149	0.290013	Foxp2_Foxp3	ENSMUST00000219315.2|Eya4|ENSMUSG00000010461.17|EYA transcriptional coactivator and phosphatase 4
mm39_v1_chr19_+_8797330_8797398	0.288838	Foxp2_Foxp3	ENSMUST00000096753.5|Hnrnpul2|ENSMUSG00000071659.5|heterogeneous nuclear ribonucleoprotein U-like 2
mm39_v1_chr14_-_55762432_55762443	0.287622	Foxp2_Foxp3	ENSMUST00000062232.15|Nrl|ENSMUSG00000040632.17|neural retina leucine zipper gene
mm39_v1_chr6_+_53550285_53550334	0.283314	Foxp2_Foxp3	ENSMUST00000205120.3|Creb5|ENSMUSG00000053007.10|cAMP responsive element binding protein 5
mm39_v1_chr12_-_11258973_11258973	0.282589	Foxp2_Foxp3	ENSMUST00000049877.3|Msgn1|ENSMUSG00000047002.3|mesogenin 1
mm39_v1_chr14_-_55762395_55762415	0.282008	Foxp2_Foxp3	ENSMUST00000228287.2|Nrl|ENSMUSG00000040632.17|neural retina leucine zipper gene
mm39_v1_chr12_-_32000534_32000558	0.281033	Foxp2_Foxp3	ENSMUST00000172314.9|Hbp1|ENSMUSG00000002996.18|high mobility group box transcription factor 1
mm39_v1_chr11_-_99241924_99241937	0.277698	Foxp2_Foxp3	ENSMUST00000017732.3|Krt27|ENSMUSG00000017588.3|keratin 27
mm39_v1_chr11_+_77656414_77656468	0.275211	Foxp2_Foxp3	ENSMUST00000164315.2|Myo18a|ENSMUSG00000000631.21|myosin XVIIIA
mm39_v1_chr4_-_59549243_59549303	0.274805	Foxp2_Foxp3	ENSMUST00000173699.8|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3	ENSMUST00000173884.8|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3	ENSMUST00000102883.11|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3	ENSMUST00000174586.8|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3
mm39_v1_chr15_+_102381929_102381976	0.273588	Foxp2_Foxp3	ENSMUST00000229746.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000230211.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000230539.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2
mm39_v1_chr6_-_72876882_72876980	0.271774	Foxp2_Foxp3	ENSMUST00000068697.11|Kcmf1|ENSMUSG00000055239.11|potassium channel modulatory factor 1
mm39_v1_chr15_+_102381705_102381927	0.270542	Foxp2_Foxp3	ENSMUST00000229958.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229184.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000230728.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000230114.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2
mm39_v1_chrX_+_111150171_111150280	0.270483	Foxp2_Foxp3	ENSMUST00000164272.3|4933403O08Rik|ENSMUSG00000079460.12|RIKEN cDNA 4933403O08 gene	ENSMUST00000132037.2|4933403O08Rik|ENSMUSG00000079460.12|RIKEN cDNA 4933403O08 gene
mm39_v1_chr5_-_148865429_148865480	0.268868	Foxp2_Foxp3	ENSMUST00000149169.3|Katnal1|ENSMUSG00000041298.16|katanin p60 subunit A-like 1	ENSMUST00000047257.15|Katnal1|ENSMUSG00000041298.16|katanin p60 subunit A-like 1
mm39_v1_chr7_-_141698342_141698346	0.268773	Foxp2_Foxp3	ENSMUST00000210537.2|Gm45337|ENSMUSG00000110061.2|predicted gene 45337
mm39_v1_chr9_+_65268304_65268343	0.264742	Foxp2_Foxp3	ENSMUST00000147185.3|Ubap1l|ENSMUSG00000086228.4|ubiquitin-associated protein 1-like
mm39_v1_chr6_-_83808717_83808732	0.264563	Foxp2_Foxp3	ENSMUST00000058383.9|Paip2b|ENSMUSG00000045896.15|poly(A) binding protein interacting protein 2B
mm39_v1_chr8_+_47193275_47193310	0.264031	Foxp2_Foxp3	ENSMUST00000207571.3|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2
mm39_v1_chrX_-_91643178_91643178	0.263854	Foxp2_Foxp3	ENSMUST00000113955.2|Mageb18|ENSMUSG00000067649.4|MAGE family member B18
mm39_v1_chr5_+_102916637_102916681	0.258321	Foxp2_Foxp3	ENSMUST00000112852.8|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24
mm39_v1_chr11_+_110858882_110858896	0.257803	Foxp2_Foxp3	ENSMUST00000125692.2|Kcnj16|ENSMUSG00000051497.16|potassium inwardly-rectifying channel, subfamily J, member 16
mm39_v1_chr13_+_58305455_58305503	0.256869	Foxp2_Foxp3	ENSMUST00000226010.2|Idnk|ENSMUSG00000050002.15|idnK gluconokinase homolog (E. coli)	ENSMUST00000051490.15|Idnk|ENSMUSG00000050002.15|idnK gluconokinase homolog (E. coli)	ENSMUST00000109868.4|Idnk|ENSMUSG00000050002.15|idnK gluconokinase homolog (E. coli)
mm39_v1_chr11_-_99996452_99996471	0.254246	Foxp2_Foxp3	ENSMUST00000107416.3|Krt36|ENSMUSG00000020916.9|keratin 36
mm39_v1_chr11_-_96720309_96720328	0.251047	Foxp2_Foxp3	ENSMUST00000167149.8|Nfe2l1|ENSMUSG00000038615.18|nuclear factor, erythroid derived 2,-like 1
mm39_v1_chr1_-_136273811_136273884	0.249942	Foxp2_Foxp3	ENSMUST00000048309.12|Camsap2|ENSMUSG00000041570.15|calmodulin regulated spectrin-associated protein family, member 2
mm39_v1_chr11_-_103529678_103529721	0.24731	Foxp2_Foxp3	ENSMUST00000107014.8|Lyzl6|ENSMUSG00000020945.14|lysozyme-like 6	ENSMUST00000021328.8|Lyzl6|ENSMUSG00000020945.14|lysozyme-like 6
mm39_v1_chr2_+_120398168_120398219	0.246509	Foxp2_Foxp3	ENSMUST00000028743.10|Snap23|ENSMUSG00000027287.15|synaptosomal-associated protein 23	ENSMUST00000116437.8|Snap23|ENSMUSG00000027287.15|synaptosomal-associated protein 23	ENSMUST00000153580.8|Snap23|ENSMUSG00000027287.15|synaptosomal-associated protein 23	ENSMUST00000142278.2|Snap23|ENSMUSG00000027287.15|synaptosomal-associated protein 23
mm39_v1_chr13_-_50597906_50597948	0.246053	Foxp2_Foxp3	ENSMUST00000225905.2|Gm47429|ENSMUSG00000114559.2|predicted gene, 47429
mm39_v1_chr9_-_90152759_90152898	0.24541	Foxp2_Foxp3	ENSMUST00000041767.14|Tbc1d2b|ENSMUSG00000037410.14|TBC1 domain family, member 2B	ENSMUST00000128874.3|Tbc1d2b|ENSMUSG00000037410.14|TBC1 domain family, member 2B
mm39_v1_chr2_-_102231208_102231314	0.243174	Foxp2_Foxp3	ENSMUST00000102573.8|Trim44|ENSMUSG00000027189.17|tripartite motif-containing 44
mm39_v1_chr6_+_51409657_51409763	0.242762	Foxp2_Foxp3	ENSMUST00000160133.2|Nfe2l3|ENSMUSG00000029832.17|nuclear factor, erythroid derived 2, like 3
mm39_v1_chr14_-_55762416_55762423	0.239906	Foxp2_Foxp3	ENSMUST00000178694.3|Nrl|ENSMUSG00000040632.17|neural retina leucine zipper gene
mm39_v1_chr3_-_89121147_89121230	0.239149	Foxp2_Foxp3	ENSMUST00000173477.8|Mtx1|ENSMUSG00000064068.16|metaxin 1	ENSMUST00000119222.9|Mtx1|ENSMUSG00000064068.16|metaxin 1
mm39_v1_chr2_-_51039112_51039127	0.235198	Foxp2_Foxp3	ENSMUST00000154545.2|Rnd3|ENSMUSG00000017144.9|Rho family GTPase 3	ENSMUST00000017288.9|Rnd3|ENSMUSG00000017144.9|Rho family GTPase 3
mm39_v1_chr17_+_46991972_46992096	0.232854	Foxp2_Foxp3	ENSMUST00000002845.8|Mea1|ENSMUSG00000002768.9|male enhanced antigen 1
mm39_v1_chr6_+_34840057_34840137	0.231792	Foxp2_Foxp3	ENSMUST00000074949.4|Tmem140|ENSMUSG00000057137.10|transmembrane protein 140
mm39_v1_chr5_+_31265651_31265678	0.231155	Foxp2_Foxp3	ENSMUST00000201740.4|Dnajc5g|ENSMUSG00000053856.8|DnaJ heat shock protein family (Hsp40) member C5 gamma	ENSMUST00000066544.5|Dnajc5g|ENSMUSG00000053856.8|DnaJ heat shock protein family (Hsp40) member C5 gamma
mm39_v1_chr6_+_17749169_17749266	0.230958	Foxp2_Foxp3	ENSMUST00000053148.14|St7|ENSMUSG00000029534.18|suppression of tumorigenicity 7	ENSMUST00000115417.4|St7|ENSMUSG00000029534.18|suppression of tumorigenicity 7
mm39_v1_chr11_-_58629939_58630038	0.228899	Foxp2_Foxp3	ENSMUST00000215513.2|Olfr317|ENSMUSG00000060030.6|olfactory receptor 317	ENSMUST00000216196.2|Olfr317|ENSMUSG00000060030.6|olfactory receptor 317
mm39_v1_chr10_+_116822219_116822219	0.228649	Foxp2_Foxp3	ENSMUST00000020378.5|Best3|ENSMUSG00000020169.5|bestrophin 3
mm39_v1_chr2_+_84670543_84670708	0.228645	Foxp2_Foxp3	ENSMUST00000111624.8|Slc43a1|ENSMUSG00000027075.17|solute carrier family 43, member 1
mm39_v1_chr14_-_49763310_49763503	0.228386	Foxp2_Foxp3	ENSMUST00000146164.2|Slc35f4|ENSMUSG00000021852.15|solute carrier family 35, member F4	ENSMUST00000138884.8|Slc35f4|ENSMUSG00000021852.15|solute carrier family 35, member F4	ENSMUST00000074368.11|Slc35f4|ENSMUSG00000021852.15|solute carrier family 35, member F4	ENSMUST00000123534.2|Slc35f4|ENSMUSG00000021852.15|solute carrier family 35, member F4
mm39_v1_chr19_-_37184692_37184907	0.227794	Foxp2_Foxp3	ENSMUST00000132580.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000079754.11|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000136286.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000126188.8|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3	ENSMUST00000126781.2|Cpeb3|ENSMUSG00000039652.17|cytoplasmic polyadenylation element binding protein 3
mm39_v1_chr2_+_167380112_167380130	0.22712	Foxp2_Foxp3	ENSMUST00000052631.8|Snai1|ENSMUSG00000042821.8|snail family zinc finger 1
mm39_v1_chr17_+_46992101_46992110	0.226906	Foxp2_Foxp3	ENSMUST00000233612.2|Mea1|ENSMUSG00000002768.9|male enhanced antigen 1
mm39_v1_chr19_-_57170725_57170747	0.226457	Foxp2_Foxp3	ENSMUST00000133369.2|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr17_-_65143066_65143066	0.224247	Foxp2_Foxp3	ENSMUST00000024896.4|4930583I09Rik|ENSMUSG00000024088.5|RIKEN cDNA 4930583I09 gene
mm39_v1_chr2_+_110551976_110551993	0.221848	Foxp2_Foxp3	ENSMUST00000090332.5|Muc15|ENSMUSG00000050808.14|mucin 15
mm39_v1_chr7_-_141729738_141729744	0.220608	Foxp2_Foxp3	ENSMUST00000190456.2|Krtap5-2|ENSMUSG00000054759.7|keratin associated protein 5-2	ENSMUST00000067978.6|Krtap5-2|ENSMUSG00000054759.7|keratin associated protein 5-2
mm39_v1_chr7_-_65020655_65020763	0.220325	Foxp2_Foxp3	ENSMUST00000032729.8|Tjp1|ENSMUSG00000030516.15|tight junction protein 1
mm39_v1_chr1_-_37955569_37955576	0.219629	Foxp2_Foxp3	ENSMUST00000078307.7|Lyg2|ENSMUSG00000061584.7|lysozyme G-like 2
mm39_v1_chr2_+_67004178_67004218	0.219232	Foxp2_Foxp3	ENSMUST00000239009.2|Xirp2|ENSMUSG00000027022.15|xin actin-binding repeat containing 2	ENSMUST00000238912.2|Xirp2|ENSMUSG00000027022.15|xin actin-binding repeat containing 2
mm39_v1_chr1_+_87331427_87331448	0.21823	Foxp2_Foxp3	ENSMUST00000172736.8|Gigyf2|ENSMUSG00000048000.16|GRB10 interacting GYF protein 2
mm39_v1_chr2_+_15054206_15054258	0.217799	Foxp2_Foxp3	ENSMUST00000017562.13|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B
mm39_v1_chrX_-_49517375_49517375	0.217238	Foxp2_Foxp3	ENSMUST00000215270.2|Olfr1324|ENSMUSG00000048173.6|olfactory receptor 1324
mm39_v1_chr1_+_59621555_59621555	0.217123	Foxp2_Foxp3	ENSMUST00000212835.2|Gm973|ENSMUSG00000047361.17|predicted gene 973
mm39_v1_chr11_+_97576619_97576673	0.214533	Foxp2_Foxp3	ENSMUST00000107584.8|Cisd3|ENSMUSG00000078695.9|CDGSH iron sulfur domain 3	ENSMUST00000107585.9|Cisd3|ENSMUSG00000078695.9|CDGSH iron sulfur domain 3
mm39_v1_chr7_+_40933751_40933751	0.214404	Foxp2_Foxp3	ENSMUST00000097044.3|Gm5592|ENSMUSG00000072259.4|predicted gene 5592
mm39_v1_chr2_+_120398133_120398158	0.213	Foxp2_Foxp3	ENSMUST00000110711.9|Snap23|ENSMUSG00000027287.15|synaptosomal-associated protein 23
mm39_v1_chr5_-_123127346_123127401	0.212405	Foxp2_Foxp3	ENSMUST00000118027.8|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr1_-_174078542_174078542	0.211823	Foxp2_Foxp3	ENSMUST00000061990.5|Olfr419|ENSMUSG00000050788.6|olfactory receptor 419
mm39_v1_chr14_+_54444010_54444010	0.210235	Foxp2_Foxp3	ENSMUST00000103729.2|Traj12|ENSMUSG00000076917.2|T cell receptor alpha joining 12
mm39_v1_chr7_-_65020955_65021041	0.209327	Foxp2_Foxp3	ENSMUST00000102592.10|Tjp1|ENSMUSG00000030516.15|tight junction protein 1
mm39_v1_chr10_+_127256736_127256786	0.209009	Foxp2_Foxp3	ENSMUST00000064793.13|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr1_+_134343107_134343146	0.206428	Foxp2_Foxp3	ENSMUST00000027727.15|Adipor1|ENSMUSG00000026457.15|adiponectin receptor 1
mm39_v1_chr18_+_69726654_69726678	0.206172	Foxp2_Foxp3	ENSMUST00000200921.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr5_+_65288418_65288501	0.205531	Foxp2_Foxp3	ENSMUST00000101191.10|Klhl5|ENSMUSG00000054920.13|kelch-like 5	ENSMUST00000204348.3|Klhl5|ENSMUSG00000054920.13|kelch-like 5
mm39_v1_chr5_-_77262968_77263003	0.203301	Foxp2_Foxp3	ENSMUST00000081964.7|Hopx|ENSMUSG00000059325.15|HOP homeobox
mm39_v1_chr3_-_151899470_151899482	0.201456	Foxp2_Foxp3	ENSMUST00000050073.13|Dnajb4|ENSMUSG00000028035.14|DnaJ heat shock protein family (Hsp40) member B4
mm39_v1_chr17_+_46991926_46991937	0.201142	Foxp2_Foxp3	ENSMUST00000233491.2|Mea1|ENSMUSG00000002768.9|male enhanced antigen 1
mm39_v1_chr18_+_20509771_20509797	0.20047	Foxp2_Foxp3	ENSMUST00000076737.7|Dsg1b|ENSMUSG00000061928.7|desmoglein 1 beta
mm39_v1_chr1_+_74832522_74832522	0.200117	Foxp2_Foxp3	ENSMUST00000187238.2|Wnt10a|ENSMUSG00000026167.15|wingless-type MMTV integration site family, member 10A
mm39_v1_chr9_-_58009554_58009585	0.200071	Foxp2_Foxp3	ENSMUST00000042205.13|Ccdc33|ENSMUSG00000037716.16|coiled-coil domain containing 33
mm39_v1_chr10_-_23225781_23225817	0.19862	Foxp2_Foxp3	ENSMUST00000092665.12|Eya4|ENSMUSG00000010461.17|EYA transcriptional coactivator and phosphatase 4
mm39_v1_chr19_+_12834647_12834647	0.198166	Foxp2_Foxp3	ENSMUST00000213606.2|Olfr1444|ENSMUSG00000046272.5|olfactory receptor 1444
mm39_v1_chr2_+_124452493_124452534	0.197447	Foxp2_Foxp3	ENSMUST00000103239.10|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	ENSMUST00000103240.9|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm39_v1_chr12_+_8997929_8997979	0.193716	Foxp2_Foxp3	ENSMUST00000020899.5|Matn3|ENSMUSG00000020583.5|matrilin 3
mm39_v1_chr11_-_93856783_93856869	0.193342	Foxp2_Foxp3	ENSMUST00000021220.10|Nme1|ENSMUSG00000037601.12|NME/NM23 nucleoside diphosphate kinase 1
mm39_v1_chr1_-_160986880_160986889	0.191631	Foxp2_Foxp3	ENSMUST00000135643.8|Tex50|ENSMUSG00000049160.16|testis expressed 50	ENSMUST00000178511.3|Tex50|ENSMUSG00000049160.16|testis expressed 50
mm39_v1_chrX_+_30768610_30768610	0.191427	Foxp2_Foxp3	ENSMUST00000179532.2|Btbd35f29|ENSMUSG00000094391.2|BTB domain containing 35, family member 29
mm39_v1_chr2_-_120119544_120119678	0.189335	Foxp2_Foxp3	ENSMUST00000094665.5|Pla2g4d|ENSMUSG00000070719.5|phospholipase A2, group IVD
mm39_v1_chr2_+_181408833_181408866	0.188466	Foxp2_Foxp3	ENSMUST00000108756.8|Myt1|ENSMUSG00000010505.17|myelin transcription factor 1
mm39_v1_chr5_-_31205357_31205423	0.18836	Foxp2_Foxp3	ENSMUST00000200816.2|Slc5a6|ENSMUSG00000006641.13|solute carrier family 5 (sodium-dependent vitamin transporter), member 6
mm39_v1_chr5_-_137529251_137529349	0.188182	Foxp2_Foxp3	ENSMUST00000132525.8|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2
mm39_v1_chr2_+_181409075_181409117	0.186643	Foxp2_Foxp3	ENSMUST00000108757.9|Myt1|ENSMUSG00000010505.17|myelin transcription factor 1
mm39_v1_chr6_-_90201420_90201420	0.185363	Foxp2_Foxp3	ENSMUST00000076086.3|Vmn1r53|ENSMUSG00000057697.3|vomeronasal 1 receptor 53
mm39_v1_chr11_+_105072619_105072808	0.185324	Foxp2_Foxp3	ENSMUST00000092537.10|Tlk2|ENSMUSG00000020694.18|tousled-like kinase 2 (Arabidopsis)	ENSMUST00000015107.13|Tlk2|ENSMUSG00000020694.18|tousled-like kinase 2 (Arabidopsis)	ENSMUST00000145048.8|Tlk2|ENSMUSG00000020694.18|tousled-like kinase 2 (Arabidopsis)
mm39_v1_chr15_+_6451721_6451813	0.184641	Foxp2_Foxp3	ENSMUST00000163082.2|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein
mm39_v1_chr7_+_107497109_107497109	0.18457	Foxp2_Foxp3	ENSMUST00000209670.4|Olfr472|ENSMUSG00000073893.7|olfactory receptor 472	ENSMUST00000216937.3|Olfr472|ENSMUSG00000073893.7|olfactory receptor 472
mm39_v1_chr5_-_72800070_72800095	0.183041	Foxp2_Foxp3	ENSMUST00000087213.12|Cnga1|ENSMUSG00000067220.13|cyclic nucleotide gated channel alpha 1
mm39_v1_chr17_-_46991709_46991860	0.182397	Foxp2_Foxp3	ENSMUST00000233524.2|Klhdc3|ENSMUSG00000063576.13|kelch domain containing 3	ENSMUST00000233733.2|Klhdc3|ENSMUSG00000063576.13|kelch domain containing 3	ENSMUST00000071841.7|Klhdc3|ENSMUSG00000063576.13|kelch domain containing 3	ENSMUST00000165007.9|Klhdc3|ENSMUSG00000063576.13|kelch domain containing 3
mm39_v1_chr1_+_173983199_173983199	0.182285	Foxp2_Foxp3	ENSMUST00000213748.2|Olfr420|ENSMUSG00000055033.5|olfactory receptor 420
mm39_v1_chr2_-_172296662_172296662	0.181515	Foxp2_Foxp3	ENSMUST00000161334.2|Gcnt7|ENSMUSG00000074569.5|glucosaminyl (N-acetyl) transferase family member 7
mm39_v1_chr13_+_19374502_19374538	0.179124	Foxp2_Foxp3	ENSMUST00000198330.2|Trgv6|ENSMUSG00000076746.4|T cell receptor gamma, variable 6	ENSMUST00000103555.3|Trgv6|ENSMUSG00000076746.4|T cell receptor gamma, variable 6
mm39_v1_chr18_+_36431732_36431732	0.178134	Foxp2_Foxp3	ENSMUST00000210490.3|Igip|ENSMUSG00000110185.3|IgA inducing protein
mm39_v1_chr1_+_134343152_134343242	0.17776	Foxp2_Foxp3	ENSMUST00000112237.2|Adipor1|ENSMUSG00000026457.15|adiponectin receptor 1
mm39_v1_chr4_-_97472844_97472880	0.177253	Foxp2_Foxp3	ENSMUST00000107067.8|E130114P18Rik|ENSMUSG00000048747.15|RIKEN cDNA E130114P18 gene	ENSMUST00000107068.9|E130114P18Rik|ENSMUSG00000048747.15|RIKEN cDNA E130114P18 gene
mm39_v1_chr1_+_175526152_175526167	0.17367	Foxp2_Foxp3	ENSMUST00000094288.10|Wdr64|ENSMUSG00000026523.15|WD repeat domain 64	ENSMUST00000171939.8|Wdr64|ENSMUSG00000026523.15|WD repeat domain 64
mm39_v1_chr11_-_99313078_99313086	0.172666	Foxp2_Foxp3	ENSMUST00000017741.4|Krt12|ENSMUSG00000020912.5|keratin 12
mm39_v1_chr4_+_94627755_94627774	0.17068	Foxp2_Foxp3	ENSMUST00000071168.6|Tek|ENSMUSG00000006386.16|TEK receptor tyrosine kinase
mm39_v1_chr7_+_99384352_99384352	0.1691	Foxp2_Foxp3	ENSMUST00000098264.2|Olfr520|ENSMUSG00000073998.3|olfactory receptor 520
mm39_v1_chr6_-_70895899_70895911	0.16887	Foxp2_Foxp3	ENSMUST00000063456.5|Tex37|ENSMUSG00000051896.5|testis expressed 37
mm39_v1_chr6_+_43149074_43149074	0.167769	Foxp2_Foxp3	ENSMUST00000216179.2|Olfr13|ENSMUSG00000043605.6|olfactory receptor 13
mm39_v1_chr14_+_50618620_50618620	0.167255	Foxp2_Foxp3	ENSMUST00000215263.2|Olfr736|ENSMUSG00000047716.5|olfactory receptor 736	ENSMUST00000213402.2|Olfr736|ENSMUSG00000047716.5|olfactory receptor 736	ENSMUST00000213755.2|Olfr736|ENSMUSG00000047716.5|olfactory receptor 736	ENSMUST00000215227.2|Olfr736|ENSMUSG00000047716.5|olfactory receptor 736
mm39_v1_chr7_+_44117444_44117469	0.166423	Foxp2_Foxp3	ENSMUST00000206887.2|Josd2|ENSMUSG00000038695.14|Josephin domain containing 2	ENSMUST00000117324.8|Josd2|ENSMUSG00000038695.14|Josephin domain containing 2	ENSMUST00000120852.8|Josd2|ENSMUSG00000038695.14|Josephin domain containing 2	ENSMUST00000134398.3|Josd2|ENSMUSG00000038695.14|Josephin domain containing 2	ENSMUST00000118628.8|Josd2|ENSMUSG00000038695.14|Josephin domain containing 2
mm39_v1_chr2_-_126639730_126639766	0.163629	Foxp2_Foxp3	ENSMUST00000136964.2|Trpm7|ENSMUSG00000027365.15|transient receptor potential cation channel, subfamily M, member 7
mm39_v1_chr16_-_17711950_17711969	0.162603	Foxp2_Foxp3	ENSMUST00000155943.9|Dgcr2|ENSMUSG00000003166.21|DiGeorge syndrome critical region gene 2
mm39_v1_chr19_+_4281953_4281982	0.160888	Foxp2_Foxp3	ENSMUST00000025773.5|Pold4|ENSMUSG00000024854.5|polymerase (DNA-directed), delta 4
mm39_v1_chr15_+_80595486_80595541	0.159964	Foxp2_Foxp3	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr6_-_106725895_106725919	0.159855	Foxp2_Foxp3	ENSMUST00000205004.2|Il5ra|ENSMUSG00000005364.12|interleukin 5 receptor, alpha
mm39_v1_chr18_-_20247824_20247839	0.159372	Foxp2_Foxp3	ENSMUST00000038710.6|Dsc1|ENSMUSG00000044322.8|desmocollin 1
mm39_v1_chr6_+_117883732_117883762	0.158891	Foxp2_Foxp3	ENSMUST00000179224.8|Hnrnpf|ENSMUSG00000042079.14|heterogeneous nuclear ribonucleoprotein F	ENSMUST00000035493.14|Hnrnpf|ENSMUSG00000042079.14|heterogeneous nuclear ribonucleoprotein F
mm39_v1_chr9_+_50515207_50515257	0.157919	Foxp2_Foxp3	ENSMUST00000044051.6|Timm8b|ENSMUSG00000039016.6|translocase of inner mitochondrial membrane 8B
mm39_v1_chr6_+_117883783_117883810	0.156708	Foxp2_Foxp3	ENSMUST00000177918.8|Hnrnpf|ENSMUSG00000042079.14|heterogeneous nuclear ribonucleoprotein F	ENSMUST00000163168.9|Hnrnpf|ENSMUSG00000042079.14|heterogeneous nuclear ribonucleoprotein F
mm39_v1_chr12_-_98540944_98540981	0.154022	Foxp2_Foxp3	ENSMUST00000221305.2|Kcnk10|ENSMUSG00000033854.11|potassium channel, subfamily K, member 10
mm39_v1_chr17_-_38618461_38618461	0.153649	Foxp2_Foxp3	ENSMUST00000213505.2|Olfr137|ENSMUSG00000054940.7|olfactory receptor 137
mm39_v1_chr6_-_121107953_121107964	0.15202	Foxp2_Foxp3	ENSMUST00000204248.2|Mical3|ENSMUSG00000051586.18|microtubule associated monooxygenase, calponin and LIM domain containing 3
mm39_v1_chr1_-_4479445_4479513	0.151319	Foxp2_Foxp3	ENSMUST00000208660.2|Rp1|ENSMUSG00000025900.14|retinitis pigmentosa 1 (human)
mm39_v1_chr11_+_5578738_5578753	0.148159	Foxp2_Foxp3	ENSMUST00000137933.2|Ankrd36|ENSMUSG00000020481.16|ankyrin repeat domain 36
mm39_v1_chr19_+_8719033_8719177	0.147461	Foxp2_Foxp3	ENSMUST00000176314.8|Stx5a|ENSMUSG00000010110.18|syntaxin 5A	ENSMUST00000073430.14|Stx5a|ENSMUSG00000010110.18|syntaxin 5A	ENSMUST00000175901.8|Stx5a|ENSMUSG00000010110.18|syntaxin 5A
mm39_v1_chr14_+_4230658_4230743	0.147309	Foxp2_Foxp3	ENSMUST00000225491.2|Nr1d2|ENSMUSG00000021775.12|nuclear receptor subfamily 1, group D, member 2
mm39_v1_chr9_-_58009508_58009553	0.147013	Foxp2_Foxp3	ENSMUST00000119665.2|Ccdc33|ENSMUSG00000037716.16|coiled-coil domain containing 33
mm39_v1_chr17_+_38482279_38482279	0.146948	Foxp2_Foxp3	ENSMUST00000215900.2|Olfr134|ENSMUSG00000096009.3|olfactory receptor 134
mm39_v1_chr5_-_31065036_31065132	0.146821	Foxp2_Foxp3	ENSMUST00000132034.5|Ost4|ENSMUSG00000038803.8|oligosaccharyltransferase complex subunit 4 (non-catalytic)	ENSMUST00000132253.5|Ost4|ENSMUSG00000038803.8|oligosaccharyltransferase complex subunit 4 (non-catalytic)
mm39_v1_chr18_+_21135079_21135152	0.146645	Foxp2_Foxp3	ENSMUST00000234545.2|Rnf138|ENSMUSG00000024317.16|ring finger protein 138
mm39_v1_chr1_-_14380032_14380060	0.141326	Foxp2_Foxp3	ENSMUST00000187790.2|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1
mm39_v1_chr9_+_38312994_38313016	0.141158	Foxp2_Foxp3	ENSMUST00000214648.3|Olfr147|ENSMUSG00000049098.5|olfactory receptor 147	ENSMUST00000056364.3|Olfr147|ENSMUSG00000049098.5|olfactory receptor 147
mm39_v1_chr6_+_70699533_70699553	0.14048	Foxp2_Foxp3	ENSMUST00000103405.2|Igkj1|ENSMUSG00000076604.2|immunoglobulin kappa joining 1
mm39_v1_chr19_-_45772230_45772276	0.139651	Foxp2_Foxp3	ENSMUST00000235448.2|Oga|ENSMUSG00000025220.9|O-GlcNAcase
mm39_v1_chr8_+_105897542_105897577	0.138643	Foxp2_Foxp3	ENSMUST00000109394.3|Cbfb|ENSMUSG00000031885.15|core binding factor beta
mm39_v1_chr10_+_127257077_127257104	0.137807	Foxp2_Foxp3	ENSMUST00000168780.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr17_-_58049214_58049214	0.136909	Foxp2_Foxp3	ENSMUST00000178907.2|Gm21834|ENSMUSG00000095330.2|predicted gene, 21834
mm39_v1_chr17_-_59298338_59298370	0.136875	Foxp2_Foxp3	ENSMUST00000025064.14|Pdzph1|ENSMUSG00000024227.15|PDZ and pleckstrin homology domains 1
mm39_v1_chr7_+_44498415_44498538	0.133316	Foxp2_Foxp3	ENSMUST00000107885.8|Akt1s1|ENSMUSG00000011096.18|AKT1 substrate 1 (proline-rich)
mm39_v1_chr17_+_34251322_34251381	0.133107	Foxp2_Foxp3	ENSMUST00000116612.3|Rxrb|ENSMUSG00000039656.18|retinoid X receptor beta
mm39_v1_chr5_+_76631887_76631887	0.131825	Foxp2_Foxp3	ENSMUST00000191515.8|Gm7271|ENSMUSG00000091204.9|predicted gene 7271
mm39_v1_chr9_+_7347369_7347445	0.129478	Foxp2_Foxp3	ENSMUST00000005950.12|Mmp12|ENSMUSG00000049723.15|matrix metallopeptidase 12	ENSMUST00000065079.6|Mmp12|ENSMUSG00000049723.15|matrix metallopeptidase 12
mm39_v1_chr16_+_93574129_93574289	0.126382	Foxp2_Foxp3	ENSMUST00000228261.2|Dop1b|ENSMUSG00000022946.11|DOP1 leucine zipper like protein B
mm39_v1_chr6_-_24527545_24527584	0.125507	Foxp2_Foxp3	ENSMUST00000118558.5|Ndufa5|ENSMUSG00000023089.13|NADH:ubiquinone oxidoreductase subunit A5
mm39_v1_chr11_-_120881697_120881864	0.12521	Foxp2_Foxp3	ENSMUST00000154483.8|Csnk1d|ENSMUSG00000025162.19|casein kinase 1, delta
mm39_v1_chr4_-_19122526_19122533	0.124187	Foxp2_Foxp3	ENSMUST00000137780.2|Cnbd1|ENSMUSG00000073991.5|cyclic nucleotide binding domain containing 1
mm39_v1_chr14_-_40907106_40907128	0.1235	Foxp2_Foxp3	ENSMUST00000077136.5|Sftpd|ENSMUSG00000021795.11|surfactant associated protein D
mm39_v1_chr5_+_104473195_104473234	0.123434	Foxp2_Foxp3	ENSMUST00000066207.4|Mepe|ENSMUSG00000053863.4|matrix extracellular phosphoglycoprotein with ASARM motif (bone)
mm39_v1_chr6_-_106725929_106725998	0.121604	Foxp2_Foxp3	ENSMUST00000204659.3|Il5ra|ENSMUSG00000005364.12|interleukin 5 receptor, alpha
mm39_v1_chr17_+_46991906_46991922	0.121092	Foxp2_Foxp3	ENSMUST00000233430.2|Mea1|ENSMUSG00000002768.9|male enhanced antigen 1
mm39_v1_chr12_-_85317359_85317430	0.120972	Foxp2_Foxp3	ENSMUST00000166821.8|Mlh3|ENSMUSG00000021245.16|mutL homolog 3	ENSMUST00000019378.8|Mlh3|ENSMUSG00000021245.16|mutL homolog 3	ENSMUST00000220854.2|Mlh3|ENSMUSG00000021245.16|mutL homolog 3
mm39_v1_chr7_-_86044743_86044743	0.120904	Foxp2_Foxp3	ENSMUST00000053958.6|Olfr303|ENSMUSG00000039608.7|olfactory receptor 303
mm39_v1_chr7_-_44498305_44498333	0.119624	Foxp2_Foxp3	ENSMUST00000207293.2|Tbc1d17|ENSMUSG00000038520.16|TBC1 domain family, member 17	ENSMUST00000207532.2|Tbc1d17|ENSMUSG00000038520.16|TBC1 domain family, member 17
mm39_v1_chr1_+_20801127_20801132	0.118668	Foxp2_Foxp3	ENSMUST00000027061.5|Il17a|ENSMUSG00000025929.5|interleukin 17A
mm39_v1_chr10_+_89906956_89906982	0.117985	Foxp2_Foxp3	ENSMUST00000183109.2|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B
mm39_v1_chr19_-_8196196_8196263	0.117767	Foxp2_Foxp3	ENSMUST00000113298.9|Slc22a29|ENSMUSG00000075044.15|solute carrier family 22. member 29
mm39_v1_chr7_-_62069887_62069905	0.117662	Foxp2_Foxp3	ENSMUST00000094340.4|Mkrn3|ENSMUSG00000070527.4|makorin, ring finger protein, 3
mm39_v1_chr9_-_53159351_53159362	0.115809	Foxp2_Foxp3	ENSMUST00000065630.8|Ddx10|ENSMUSG00000053289.9|DEAD box helicase 10
mm39_v1_chr6_-_93890520_93890544	0.112221	Foxp2_Foxp3	ENSMUST00000203688.3|Magi1|ENSMUSG00000045095.17|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm39_v1_chr2_-_87524291_87524291	0.111744	Foxp2_Foxp3	ENSMUST00000077471.5|Olfr1136|ENSMUSG00000075151.7|olfactory receptor 1136
mm39_v1_chrX_+_4703838_4703838	0.110842	Foxp2_Foxp3	ENSMUST00000105011.4|Btbd35f4|ENSMUSG00000078213.4|BTB domain containing 35, family member 4
mm39_v1_chrX_+_3942699_3942699	0.108551	Foxp2_Foxp3	ENSMUST00000140300.2|Btbd35f3|ENSMUSG00000078218.3|BTB domain containing 35, family member 3
mm39_v1_chr17_+_46991350_46991404	0.107425	Foxp2_Foxp3	ENSMUST00000232732.2|Mea1|ENSMUSG00000002768.9|male enhanced antigen 1
mm39_v1_chr16_+_36030773_36030773	0.107091	Foxp2_Foxp3	ENSMUST00000089628.4|Csta3|ENSMUSG00000094733.2|cystatin A family member 3
mm39_v1_chr18_-_20247928_20247941	0.106414	Foxp2_Foxp3	ENSMUST00000226115.2|Dsc1|ENSMUSG00000044322.8|desmocollin 1
mm39_v1_chrX_-_105884178_105884250	0.105743	Foxp2_Foxp3	ENSMUST00000062010.10|Rtl3|ENSMUSG00000047686.10|retrotransposon Gag like 3
mm39_v1_chr11_-_57963742_57963858	0.105684	Foxp2_Foxp3	ENSMUST00000137124.3|Gm12248|ENSMUSG00000086962.5|predicted gene 12248
mm39_v1_chr11_+_105072353_105072424	0.103057	Foxp2_Foxp3	ENSMUST00000106941.9|Tlk2|ENSMUSG00000020694.18|tousled-like kinase 2 (Arabidopsis)
mm39_v1_chr9_-_16289527_16289527	0.10018	Foxp2_Foxp3	ENSMUST00000082170.6|Fat3|ENSMUSG00000074505.7|FAT atypical cadherin 3
mm39_v1_chr3_+_69914946_69914989	0.0996923	Foxp2_Foxp3	ENSMUST00000053013.6|Otol1|ENSMUSG00000027788.7|otolin 1
mm39_v1_chr15_+_34838195_34838195	0.0994445	Foxp2_Foxp3	ENSMUST00000228725.2|Kcns2|ENSMUSG00000050963.8|K+ voltage-gated channel, subfamily S, 2
mm39_v1_chr17_+_43671314_43671345	0.0993819	Foxp2_Foxp3	ENSMUST00000226087.2|Adgrf5|ENSMUSG00000056492.7|adhesion G protein-coupled receptor F5
mm39_v1_chrX_+_56133466_56133466	0.0975277	Foxp2_Foxp3	ENSMUST00000033465.10|Vgll1|ENSMUSG00000031131.12|vestigial like family member 1
mm39_v1_chr2_-_72817060_72817060	0.0957637	Foxp2_Foxp3	ENSMUST00000112062.2|Gm11084|ENSMUSG00000079286.2|predicted gene 11084
mm39_v1_chr6_-_134768288_134768303	0.094856	Foxp2_Foxp3	ENSMUST00000149776.3|Dusp16|ENSMUSG00000030203.18|dual specificity phosphatase 16
mm39_v1_chr10_-_105410280_105410313	0.0944266	Foxp2_Foxp3	ENSMUST00000061506.9|Tmtc2|ENSMUSG00000036019.9|transmembrane and tetratricopeptide repeat containing 2
mm39_v1_chr11_-_70128462_70128504	0.0942797	Foxp2_Foxp3	ENSMUST00000100950.10|0610010K14Rik|ENSMUSG00000020831.19|RIKEN cDNA 0610010K14 gene
mm39_v1_chr2_+_154455217_154455290	0.0937859	Foxp2_Foxp3	ENSMUST00000081926.13|Zfp341|ENSMUSG00000059842.13|zinc finger protein 341	ENSMUST00000109702.2|Zfp341|ENSMUSG00000059842.13|zinc finger protein 341
mm39_v1_chr6_+_31375670_31375795	0.0933791	Foxp2_Foxp3	ENSMUST00000026699.15|Mkln1|ENSMUSG00000025609.16|muskelin 1, intracellular mediator containing kelch motifs
mm39_v1_chr14_-_54651442_54651542	0.0902073	Foxp2_Foxp3	ENSMUST00000227334.2|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm39_v1_chrX_+_31839202_31839202	0.0877661	Foxp2_Foxp3	ENSMUST00000179991.3|Btbd35f2|ENSMUSG00000096194.3|BTB domain containing 35, family member 2
mm39_v1_chr19_+_26728339_26728367	0.0857766	Foxp2_Foxp3	ENSMUST00000175953.3|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm39_v1_chr11_+_11065782_11065851	0.0846921	Foxp2_Foxp3	ENSMUST00000056344.5|Vwc2|ENSMUSG00000050830.18|von Willebrand factor C domain containing 2
mm39_v1_chr11_-_73217298_73217304	0.0842269	Foxp2_Foxp3	ENSMUST00000155630.9|Aspa|ENSMUSG00000020774.10|aspartoacylase
mm39_v1_chr19_+_36325683_36325715	0.084191	Foxp2_Foxp3	ENSMUST00000225920.2|Pcgf5|ENSMUSG00000024805.17|polycomb group ring finger 5
mm39_v1_chr12_+_69343450_69343574	0.0839139	Foxp2_Foxp3	ENSMUST00000021362.5|Klhdc2|ENSMUSG00000020978.11|kelch domain containing 2
mm39_v1_chr2_+_121787131_121787145	0.0834169	Foxp2_Foxp3	ENSMUST00000110574.8|Ctdspl2|ENSMUSG00000033411.17|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm39_v1_chr3_+_137573839_137573927	0.0829442	Foxp2_Foxp3	ENSMUST00000197711.2|Dnajb14|ENSMUSG00000074212.8|DnaJ heat shock protein family (Hsp40) member B14
mm39_v1_chrX_-_101294380_101294415	0.0813645	Foxp2_Foxp3	ENSMUST00000130589.2|Cited1|ENSMUSG00000051159.17|Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1
mm39_v1_chr9_-_39486831_39486865	0.0805574	Foxp2_Foxp3	ENSMUST00000216298.2|Olfr959|ENSMUSG00000059366.4|olfactory receptor 959	ENSMUST00000215194.2|Olfr959|ENSMUSG00000059366.4|olfactory receptor 959
mm39_v1_chr2_-_86640362_86640362	0.0768973	Foxp2_Foxp3	ENSMUST00000216117.2|Olfr141|ENSMUSG00000078420.7|olfactory receptor 141
mm39_v1_chr1_-_194813843_194813895	0.076522	Foxp2_Foxp3	ENSMUST00000075451.12|Cr1l|ENSMUSG00000016481.16|complement component (3b/4b) receptor 1-like	ENSMUST00000191775.2|Cr1l|ENSMUSG00000016481.16|complement component (3b/4b) receptor 1-like
mm39_v1_chr2_+_3771709_3771745	0.0764316	Foxp2_Foxp3	ENSMUST00000177037.2|Fam107b|ENSMUSG00000026655.16|family with sequence similarity 107, member B
mm39_v1_chr11_+_87628356_87628419	0.0759274	Foxp2_Foxp3	ENSMUST00000093955.12|Supt4a|ENSMUSG00000020485.15|SPT4A, DSIF elongation factor subunit
mm39_v1_chr6_+_40416022_40416022	0.075701	Foxp2_Foxp3	ENSMUST00000202464.4|Wee2|ENSMUSG00000037159.12|WEE1 homolog 2 (S. pombe)
mm39_v1_chr16_-_22258320_22258351	0.0747315	Foxp2_Foxp3	ENSMUST00000170393.2|Etv5|ENSMUSG00000013089.16|ets variant 5
mm39_v1_chr9_+_49179872_49179872	0.0744436	Foxp2_Foxp3	ENSMUST00000067007.8|Gm4894|ENSMUSG00000054156.9|predicted gene 4894
mm39_v1_chr11_+_83363905_83363949	0.0730553	Foxp2_Foxp3	ENSMUST00000021018.11|Taf15|ENSMUSG00000020680.16|TATA-box binding protein associated factor 15
mm39_v1_chr9_+_56982622_56982727	0.0722512	Foxp2_Foxp3	ENSMUST00000167715.8|Sin3a|ENSMUSG00000042557.15|transcriptional regulator, SIN3A (yeast)
mm39_v1_chr1_+_34574708_34574736	0.0714662	Foxp2_Foxp3	ENSMUST00000027298.5|Cfc1|ENSMUSG00000026124.5|cripto, FRL-1, cryptic family 1
mm39_v1_chr6_+_24733239_24733248	0.0712823	Foxp2_Foxp3	ENSMUST00000031690.6|Hyal6|ENSMUSG00000029679.8|hyaluronoglucosaminidase 6
mm39_v1_chr6_+_21986445_21986595	0.0704002	Foxp2_Foxp3	ENSMUST00000115382.8|Cped1|ENSMUSG00000062980.16|cadherin-like and PC-esterase domain containing 1
mm39_v1_chr7_-_101714251_101714366	0.0701165	Foxp2_Foxp3	ENSMUST00000130074.2|Rnf121|ENSMUSG00000070426.13|ring finger protein 121	ENSMUST00000131104.3|Rnf121|ENSMUSG00000070426.13|ring finger protein 121	ENSMUST00000096639.12|Rnf121|ENSMUSG00000070426.13|ring finger protein 121
mm39_v1_chr2_-_73143045_73143068	0.0697362	Foxp2_Foxp3	ENSMUST00000058615.10|Cir1|ENSMUSG00000041777.13|corepressor interacting with RBPJ, 1
mm39_v1_chr10_-_4338032_4338108	0.0695962	Foxp2_Foxp3	ENSMUST00000100078.10|Zbtb2|ENSMUSG00000075327.11|zinc finger and BTB domain containing 2
mm39_v1_chr2_+_90817948_90818091	0.0695466	Foxp2_Foxp3	ENSMUST00000111452.8|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000111455.9|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1
mm39_v1_chr11_-_106605772_106605899	0.0687394	Foxp2_Foxp3	ENSMUST00000124958.3|Pecam1|ENSMUSG00000020717.20|platelet/endothelial cell adhesion molecule 1
mm39_v1_chr11_+_46641330_46641362	0.0686207	Foxp2_Foxp3	ENSMUST00000109223.8|Havcr1|ENSMUSG00000040405.14|hepatitis A virus cellular receptor 1
mm39_v1_chr6_+_141470261_141470312	0.0662139	Foxp2_Foxp3	ENSMUST00000203140.2|Slco1c1|ENSMUSG00000030235.18|solute carrier organic anion transporter family, member 1c1
mm39_v1_chr18_-_20247666_20247677	0.0649966	Foxp2_Foxp3	ENSMUST00000224432.2|Dsc1|ENSMUSG00000044322.8|desmocollin 1
mm39_v1_chr11_+_59503792_59503792	0.064972	Foxp2_Foxp3	ENSMUST00000055276.6|Olfr225|ENSMUSG00000044061.8|olfactory receptor 225
mm39_v1_chr6_+_48604157_48604215	0.0647669	Foxp2_Foxp3	ENSMUST00000203088.3|AI854703|ENSMUSG00000053297.15|expressed sequence AI854703	ENSMUST00000204958.2|AI854703|ENSMUSG00000053297.15|expressed sequence AI854703
mm39_v1_chr3_+_31956656_31956808	0.0645011	Foxp2_Foxp3	ENSMUST00000119310.8|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm39_v1_chr18_+_77981636_77981692	0.0638197	Foxp2_Foxp3	ENSMUST00000044622.7|Epg5|ENSMUSG00000039840.9|ectopic P-granules autophagy protein 5 homolog (C. elegans)
mm39_v1_chr6_-_134874778_134874888	0.0587245	Foxp2_Foxp3	ENSMUST00000165392.8|Gpr19|ENSMUSG00000032641.19|G protein-coupled receptor 19	ENSMUST00000204880.3|Gpr19|ENSMUSG00000032641.19|G protein-coupled receptor 19	ENSMUST00000203409.3|Gpr19|ENSMUSG00000032641.19|G protein-coupled receptor 19	ENSMUST00000046255.14|Gpr19|ENSMUSG00000032641.19|G protein-coupled receptor 19	ENSMUST00000111932.8|Gpr19|ENSMUSG00000032641.19|G protein-coupled receptor 19	ENSMUST00000149375.8|Gpr19|ENSMUSG00000032641.19|G protein-coupled receptor 19	ENSMUST00000116515.9|Gpr19|ENSMUSG00000032641.19|G protein-coupled receptor 19
mm39_v1_chr11_-_99869879_99869927	0.0581407	Foxp2_Foxp3	ENSMUST00000105051.2|Krtap29-1|ENSMUSG00000078254.2|keratin associated protein 29-1
mm39_v1_chr5_+_37271128_37271128	0.0579276	Foxp2_Foxp3	ENSMUST00000212997.2|ENSMUSG00000113373.2|ENSMUSG00000113373.2|novel protein
mm39_v1_chr9_+_37829250_37829250	0.0574903	Foxp2_Foxp3	ENSMUST00000214263.2|Olfr878|ENSMUSG00000066747.7|olfactory receptor 878
mm39_v1_chr8_-_37420293_37420314	0.0574736	Foxp2_Foxp3	ENSMUST00000179501.2|Dlc1|ENSMUSG00000031523.17|deleted in liver cancer 1
mm39_v1_chr4_+_102617332_102617381	0.0563587	Foxp2_Foxp3	ENSMUST00000066824.14|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1
mm39_v1_chr3_-_33136153_33136217	0.0547746	Foxp2_Foxp3	ENSMUST00000108225.10|Pex5l|ENSMUSG00000027674.17|peroxisomal biogenesis factor 5-like
mm39_v1_chr7_+_40803265_40803265	0.0528731	Foxp2_Foxp3	ENSMUST00000206490.2|Gm5592|ENSMUSG00000072259.4|predicted gene 5592
mm39_v1_chr6_+_116263513_116263544	0.0525178	Foxp2_Foxp3	ENSMUST00000221069.2|Zfand4|ENSMUSG00000042213.18|zinc finger, AN1-type domain 4
mm39_v1_chr14_+_54446850_54446850	0.0523864	Foxp2_Foxp3	ENSMUST00000103731.2|Traj9|ENSMUSG00000076919.2|T cell receptor alpha joining 9
mm39_v1_chr11_+_11439266_11439266	0.051757	Foxp2_Foxp3	ENSMUST00000109678.3|Spata48|ENSMUSG00000020191.12|spermatogenesis associated 48
mm39_v1_chr11_-_99474480_99474508	0.0512336	Foxp2_Foxp3	ENSMUST00000100479.3|Krtap1-4|ENSMUSG00000075567.5|keratin associated protein 1-4
mm39_v1_chr8_-_70340337_70340337	0.0507777	Foxp2_Foxp3	ENSMUST00000057831.8|Cilp2|ENSMUSG00000044006.9|cartilage intermediate layer protein 2
mm39_v1_chr17_-_90217868_90217877	0.0496281	Foxp2_Foxp3	ENSMUST00000086423.6|Gm10184|ENSMUSG00000066878.6|predicted pseudogene 10184
mm39_v1_chr14_-_50538979_50538979	0.0487099	Foxp2_Foxp3	ENSMUST00000216195.2|Olfr733|ENSMUSG00000090874.3|olfactory receptor 733	ENSMUST00000214372.2|Olfr733|ENSMUSG00000090874.3|olfactory receptor 733	ENSMUST00000214756.2|Olfr733|ENSMUSG00000090874.3|olfactory receptor 733
mm39_v1_chr15_-_60696790_60696929	0.0458724	Foxp2_Foxp3	ENSMUST00000100635.5|Lratd2|ENSMUSG00000072568.5|LRAT domain containing 1
mm39_v1_chr11_+_69047815_69047877	0.0458445	Foxp2_Foxp3	ENSMUST00000036424.3|Alox12b|ENSMUSG00000032807.6|arachidonate 12-lipoxygenase, 12R type
mm39_v1_chr17_+_75772567_75772586	0.0445619	Foxp2_Foxp3	ENSMUST00000234660.2|Rasgrp3|ENSMUSG00000071042.13|RAS, guanyl releasing protein 3
mm39_v1_chr3_+_40594899_40594939	0.0440152	Foxp2_Foxp3	ENSMUST00000091186.7|Intu|ENSMUSG00000060798.8|inturned planar cell polarity protein
mm39_v1_chr5_-_99400698_99400786	0.0430911	Foxp2_Foxp3	ENSMUST00000031276.15|Rasgef1b|ENSMUSG00000089809.10|RasGEF domain family, member 1B	ENSMUST00000168092.8|Rasgef1b|ENSMUSG00000089809.10|RasGEF domain family, member 1B
mm39_v1_chr2_+_18069375_18069516	0.0423509	Foxp2_Foxp3	ENSMUST00000114671.8|Mllt10|ENSMUSG00000026743.17|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	ENSMUST00000114680.9|Mllt10|ENSMUSG00000026743.17|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
mm39_v1_chr18_+_65831324_65831355	0.0421757	Foxp2_Foxp3	ENSMUST00000115097.8|Oacyl|ENSMUSG00000046610.16|O-acyltransferase like	ENSMUST00000117694.2|Oacyl|ENSMUSG00000046610.16|O-acyltransferase like	ENSMUST00000235962.2|Oacyl|ENSMUSG00000046610.16|O-acyltransferase like
mm39_v1_chr6_-_52211882_52211940	0.0398405	Foxp2_Foxp3	ENSMUST00000125581.2|Hoxa10|ENSMUSG00000000938.12|homeobox A10
mm39_v1_chr10_+_4432488_4432521	0.0387936	Foxp2_Foxp3	ENSMUST00000138112.8|Ccdc170|ENSMUSG00000019767.13|coiled-coil domain containing 170
mm39_v1_chr1_-_16727133_16727146	0.0383507	Foxp2_Foxp3	ENSMUST00000185771.7|Eloc|ENSMUSG00000079658.10|elongin C
mm39_v1_chr6_-_29609606_29609652	0.0363507	Foxp2_Foxp3	ENSMUST00000115251.8|Tnpo3|ENSMUSG00000012535.15|transportin 3
mm39_v1_chr10_+_127256993_127257073	0.0362046	Foxp2_Foxp3	ENSMUST00000170336.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr12_+_113038098_113038143	0.0345893	Foxp2_Foxp3	ENSMUST00000012355.14|Tex22|ENSMUSG00000012211.14|testis expressed gene 22	ENSMUST00000146107.8|Tex22|ENSMUSG00000012211.14|testis expressed gene 22
mm39_v1_chr3_+_137329791_137329831	0.0325892	Foxp2_Foxp3	ENSMUST00000165845.2|Ddit4l|ENSMUSG00000046818.8|DNA-damage-inducible transcript 4-like
mm39_v1_chr5_-_31205339_31205353	0.0324178	Foxp2_Foxp3	ENSMUST00000202520.4|Slc5a6|ENSMUSG00000006641.13|solute carrier family 5 (sodium-dependent vitamin transporter), member 6	ENSMUST00000202556.4|Slc5a6|ENSMUSG00000006641.13|solute carrier family 5 (sodium-dependent vitamin transporter), member 6
mm39_v1_chr9_+_100956145_100956165	0.0316255	Foxp2_Foxp3	ENSMUST00000189616.2|Msl2|ENSMUSG00000066415.5|MSL complex subunit 2
mm39_v1_chrX_+_3076875_3076875	0.0294215	Foxp2_Foxp3	ENSMUST00000189190.2|Btbd35f23|ENSMUSG00000100249.2|BTB domain containing 35, family member 23
mm39_v1_chr8_-_120285457_120285506	0.0258119	Foxp2_Foxp3	ENSMUST00000098362.11|Mbtps1|ENSMUSG00000031835.17|membrane-bound transcription factor peptidase, site 1	ENSMUST00000081381.6|Mbtps1|ENSMUSG00000031835.17|membrane-bound transcription factor peptidase, site 1
mm39_v1_chrX_+_150304137_150304203	0.0255636	Foxp2_Foxp3	ENSMUST00000112670.8|Phf8|ENSMUSG00000041229.16|PHD finger protein 8	ENSMUST00000046962.11|Phf8|ENSMUSG00000041229.16|PHD finger protein 8	ENSMUST00000112668.9|Phf8|ENSMUSG00000041229.16|PHD finger protein 8	ENSMUST00000046950.13|Phf8|ENSMUSG00000041229.16|PHD finger protein 8
mm39_v1_chr11_+_58549642_58549642	0.0254474	Foxp2_Foxp3	ENSMUST00000214392.2|Olfr322|ENSMUSG00000063549.5|olfactory receptor 322
mm39_v1_chr10_+_76284907_76284943	0.0245654	Foxp2_Foxp3	ENSMUST00000092406.12|2610028H24Rik|ENSMUSG00000009114.18|RIKEN cDNA 2610028H24 gene
mm39_v1_chr7_+_141342696_141342748	0.0236314	Foxp2_Foxp3	ENSMUST00000155534.9|Muc5ac|ENSMUSG00000037974.17|mucin 5, subtypes A and C, tracheobronchial/gastric	ENSMUST00000041924.14|Muc5ac|ENSMUSG00000037974.17|mucin 5, subtypes A and C, tracheobronchial/gastric	ENSMUST00000163321.3|Muc5ac|ENSMUSG00000037974.17|mucin 5, subtypes A and C, tracheobronchial/gastric
mm39_v1_chr12_-_98700886_98700952	0.0228304	Foxp2_Foxp3	ENSMUST00000085116.4|Ptpn21|ENSMUSG00000021009.16|protein tyrosine phosphatase, non-receptor type 21
mm39_v1_chr14_-_14389372_14389457	0.0227868	Foxp2_Foxp3	ENSMUST00000023924.4|Rpp14|ENSMUSG00000023156.5|ribonuclease P 14 subunit
mm39_v1_chr3_-_79645101_79645203	0.0224897	Foxp2_Foxp3	ENSMUST00000078527.13|Rxfp1|ENSMUSG00000034009.15|relaxin/insulin-like family peptide receptor 1
mm39_v1_chr1_+_10127147_10127151	0.0224259	Foxp2_Foxp3	ENSMUST00000149214.3|Cspp1|ENSMUSG00000056763.17|centrosome and spindle pole associated protein 1
mm39_v1_chr14_+_54427323_54427323	0.0219775	Foxp2_Foxp3	ENSMUST00000103711.2|Traj30|ENSMUSG00000076899.2|T cell receptor alpha joining 30
mm39_v1_chr16_-_18695267_18695320	0.0202171	Foxp2_Foxp3	ENSMUST00000119273.2|Mrpl40|ENSMUSG00000022706.17|mitochondrial ribosomal protein L40
mm39_v1_chr2_+_166634445_166634456	0.0189473	Foxp2_Foxp3	ENSMUST00000065753.2|Trp53rkb|ENSMUSG00000042854.10|transformation related protein 53 regulating kinase B
mm39_v1_chr1_-_14380327_14380348	0.0184129	Foxp2_Foxp3	ENSMUST00000080664.14|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1
mm39_v1_chr6_+_39848367_39848440	0.0174306	Foxp2_Foxp3	ENSMUST00000239008.2|Tmem178b|ENSMUSG00000057716.8|transmembrane protein 178B
mm39_v1_chr1_-_156766351_156766379	0.0170623	Foxp2_Foxp3	ENSMUST00000189648.2|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2
mm39_v1_chr15_-_56557920_56557950	0.0166291	Foxp2_Foxp3	ENSMUST00000050544.8|Has2|ENSMUSG00000022367.8|hyaluronan synthase 2
mm39_v1_chr8_-_33374825_33374944	0.0161269	Foxp2_Foxp3	ENSMUST00000238791.2|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chr2_-_71198091_71198142	0.015392	Foxp2_Foxp3	ENSMUST00000151937.8|Slc25a12|ENSMUSG00000027010.17|solute carrier family 25 (mitochondrial carrier, Aralar), member 12
mm39_v1_chr5_-_96312006_96312060	0.0139681	Foxp2_Foxp3	ENSMUST00000137207.2|Cnot6l|ENSMUSG00000034724.19|CCR4-NOT transcription complex, subunit 6-like
mm39_v1_chr17_+_28945057_28945057	0.0127841	Foxp2_Foxp3	ENSMUST00000233003.2|Gm4356|ENSMUSG00000117145.2|predicted gene 4356
mm39_v1_chr14_-_52252318_52252369	0.0117072	Foxp2_Foxp3	ENSMUST00000228051.2|Zfp219|ENSMUSG00000049295.18|zinc finger protein 219
mm39_v1_chr14_-_70945434_70945486	0.00946566	Foxp2_Foxp3	ENSMUST00000228346.2|Xpo7|ENSMUSG00000022100.15|exportin 7
mm39_v1_chr10_-_128996851_128996851	0.00682294	Foxp2_Foxp3	ENSMUST00000078914.3|Olfr771|ENSMUSG00000061367.4|olfactory receptor 771
mm39_v1_chr1_+_83022653_83022653	0.00642907	Foxp2_Foxp3	ENSMUST00000222567.2|Gm47969|ENSMUSG00000113267.2|predicted gene, 47969
mm39_v1_chr1_+_132155922_132155922	0.00603388	Foxp2_Foxp3	ENSMUST00000191418.2|Lemd1|ENSMUSG00000079330.10|LEM domain containing 1
mm39_v1_chr9_-_102231884_102231898	0.00530546	Foxp2_Foxp3	ENSMUST00000035129.14|Ephb1|ENSMUSG00000032537.16|Eph receptor B1	ENSMUST00000085169.12|Ephb1|ENSMUSG00000032537.16|Eph receptor B1	ENSMUST00000149800.3|Ephb1|ENSMUSG00000032537.16|Eph receptor B1
mm39_v1_chr4_+_118384183_118384221	0.00491418	Foxp2_Foxp3	ENSMUST00000106367.8|2610528J11Rik|ENSMUSG00000028536.13|RIKEN cDNA 2610528J11 gene
mm39_v1_chr7_+_107264518_107264588	0.00170195	Foxp2_Foxp3	ENSMUST00000239294.2|Ppfibp2|ENSMUSG00000036528.17|PTPRF interacting protein, binding protein 2 (liprin beta 2)
mm39_v1_chr7_-_25488060_25488135	0.000796873	Foxp2_Foxp3	ENSMUST00000002677.11|Axl|ENSMUSG00000002602.17|AXL receptor tyrosine kinase	ENSMUST00000085948.11|Axl|ENSMUSG00000002602.17|AXL receptor tyrosine kinase
mm39_v1_chr2_+_84880776_84880847	0.000578017	Foxp2_Foxp3	ENSMUST00000111605.9|Tnks1bp1|ENSMUSG00000033955.14|tankyrase 1 binding protein 1
