mm39_v1_chrX_+_97192356_97192388	0.124929	GAGAACU	ENSMUST00000052837.9|Ar|ENSMUSG00000046532.9|androgen receptor
mm39_v1_chr5_-_69699965_69699991	0.104153	GAGAACU	ENSMUST00000031045.10|Yipf7|ENSMUSG00000029158.10|Yip1 domain family, member 7
mm39_v1_chr2_+_33106062_33106096	0.0945183	GAGAACU	ENSMUST00000004208.7|Angptl2|ENSMUSG00000004105.9|angiopoietin-like 2
mm39_v1_chr7_+_89281897_89281939	0.0874854	GAGAACU	ENSMUST00000032856.13|Me3|ENSMUSG00000030621.18|malic enzyme 3, NADP(+)-dependent, mitochondrial
mm39_v1_chr7_+_113365235_113365276	0.0829476	GAGAACU	ENSMUST00000046687.16|Spon1|ENSMUSG00000038156.17|spondin 1, (f-spondin) extracellular matrix protein
mm39_v1_chr15_+_81686622_81686779	0.0730813	GAGAACU	ENSMUST00000109553.10|Tef|ENSMUSG00000022389.16|thyrotroph embryonic factor
mm39_v1_chr9_-_43027809_43027866	0.0729796	GAGAACU	ENSMUST00000216126.2|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5	ENSMUST00000213544.2|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5	ENSMUST00000061833.6|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5
mm39_v1_chr16_-_56706494_56706539	0.0639574	GAGAACU	ENSMUST00000023435.6|Tmem45a|ENSMUSG00000022754.7|transmembrane protein 45a
mm39_v1_chr7_-_34353767_34353823	0.0617741	GAGAACU	ENSMUST00000206501.2|Kctd15|ENSMUSG00000030499.10|potassium channel tetramerisation domain containing 15	ENSMUST00000108069.8|Kctd15|ENSMUSG00000030499.10|potassium channel tetramerisation domain containing 15
mm39_v1_chr2_-_30364219_30364239	0.0545476	GAGAACU	ENSMUST00000065134.4|Ier5l|ENSMUSG00000089762.4|immediate early response 5-like
mm39_v1_chr16_+_4457805_4457842	0.0502623	GAGAACU	ENSMUST00000038770.4|Vasn|ENSMUSG00000039646.6|vasorin
mm39_v1_chr18_+_38383297_38383340	0.0427823	GAGAACU	ENSMUST00000025314.7|Dele1|ENSMUSG00000024442.7|DAP3 binding cell death enhancer 1	ENSMUST00000236078.2|Dele1|ENSMUSG00000024442.7|DAP3 binding cell death enhancer 1
mm39_v1_chr5_+_123214332_123214418	0.0418637	GAGAACU	ENSMUST00000067505.15|Tmem120b|ENSMUSG00000054434.15|transmembrane protein 120B	ENSMUST00000111619.10|Tmem120b|ENSMUSG00000054434.15|transmembrane protein 120B	ENSMUST00000160344.2|Tmem120b|ENSMUSG00000054434.15|transmembrane protein 120B
mm39_v1_chr1_-_170803680_170803696	0.0410502	GAGAACU	ENSMUST00000027966.14|Fcgr2b|ENSMUSG00000026656.16|Fc receptor, IgG, low affinity IIb	ENSMUST00000081103.12|Fcgr2b|ENSMUSG00000026656.16|Fc receptor, IgG, low affinity IIb	ENSMUST00000159688.2|Fcgr2b|ENSMUSG00000026656.16|Fc receptor, IgG, low affinity IIb
mm39_v1_chr1_-_15962881_15962953	0.0397485	GAGAACU	ENSMUST00000040695.5|Sbspon|ENSMUSG00000032719.5|somatomedin B and thrombospondin, type 1 domain containing
mm39_v1_chr2_-_26393826_26393849	0.0390831	GAGAACU	ENSMUST00000028288.5|Notch1|ENSMUSG00000026923.16|notch 1
mm39_v1_chrX_+_40490005_40490181	0.0389272	GAGAACU	ENSMUST00000115103.9|Gria3|ENSMUSG00000001986.17|glutamate receptor, ionotropic, AMPA3 (alpha 3)	ENSMUST00000076349.12|Gria3|ENSMUSG00000001986.17|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm39_v1_chr19_-_34504871_34504880	0.0381299	GAGAACU	ENSMUST00000178114.2|Lipa|ENSMUSG00000024781.17|lysosomal acid lipase A	ENSMUST00000049572.15|Lipa|ENSMUSG00000024781.17|lysosomal acid lipase A
mm39_v1_chr2_-_104324745_104324809	0.0380187	GAGAACU	ENSMUST00000028600.14|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr14_+_5894220_5894254	0.0355817	GAGAACU	ENSMUST00000063750.8|Rarb|ENSMUSG00000017491.10|retinoic acid receptor, beta
mm39_v1_chr2_+_101508747_101508815	0.0323835	GAGAACU	ENSMUST00000004949.8|Traf6|ENSMUSG00000027164.9|TNF receptor-associated factor 6
mm39_v1_chr14_+_69266566_69266687	0.0317034	GAGAACU	ENSMUST00000014957.10|Stc1|ENSMUSG00000014813.10|stanniocalcin 1
mm39_v1_chr15_-_53765869_53765926	0.0313042	GAGAACU	ENSMUST00000078673.14|Samd12|ENSMUSG00000058656.14|sterile alpha motif domain containing 12
mm39_v1_chr14_-_26693189_26693189	0.0307903	GAGAACU	ENSMUST00000036570.5|Appl1|ENSMUSG00000040760.12|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm39_v1_chr2_-_181234526_181234596	0.0297203	GAGAACU	ENSMUST00000108789.9|Zfp512b|ENSMUSG00000000823.17|zinc finger protein 512B	ENSMUST00000153998.2|Zfp512b|ENSMUSG00000000823.17|zinc finger protein 512B
mm39_v1_chr1_-_16589511_16589560	0.0293271	GAGAACU	ENSMUST00000162751.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000027052.13|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000149320.9|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2
mm39_v1_chr1_+_60785517_60785586	0.0282895	GAGAACU	ENSMUST00000027165.3|Cd28|ENSMUSG00000026012.3|CD28 antigen
mm39_v1_chr15_-_13173736_13173791	0.0255202	GAGAACU	ENSMUST00000036439.6|Cdh6|ENSMUSG00000039385.6|cadherin 6
mm39_v1_chr18_+_11972277_11972331	0.0238705	GAGAACU	ENSMUST00000171109.9|Cables1|ENSMUSG00000040957.16|CDK5 and Abl enzyme substrate 1	ENSMUST00000046948.10|Cables1|ENSMUSG00000040957.16|CDK5 and Abl enzyme substrate 1
mm39_v1_chr2_+_130292168_130292229	0.0225811	GAGAACU	ENSMUST00000028769.14|Ptpra|ENSMUSG00000027303.19|protein tyrosine phosphatase, receptor type, A	ENSMUST00000230981.2|Ptpra|ENSMUSG00000027303.19|protein tyrosine phosphatase, receptor type, A
mm39_v1_chr4_+_131649001_131649082	0.0221767	GAGAACU	ENSMUST00000094666.4|Tmem200b|ENSMUSG00000070720.5|transmembrane protein 200B
mm39_v1_chr2_+_26806372_26806410	0.0206618	GAGAACU	ENSMUST00000015017.8|Surf2|ENSMUSG00000014873.16|surfeit gene 2
mm39_v1_chr11_+_72498029_72498133	0.0185874	GAGAACU	ENSMUST00000021148.13|Ube2g1|ENSMUSG00000020794.14|ubiquitin-conjugating enzyme E2G 1	ENSMUST00000138247.8|Ube2g1|ENSMUSG00000020794.14|ubiquitin-conjugating enzyme E2G 1
mm39_v1_chr11_-_23720953_23721028	0.0182397	GAGAACU	ENSMUST00000102864.5|Rel|ENSMUSG00000020275.10|reticuloendotheliosis oncogene
mm39_v1_chr11_+_86574811_86574915	0.0177763	GAGAACU	ENSMUST00000108022.8|Ptrh2|ENSMUSG00000072582.10|peptidyl-tRNA hydrolase 2	ENSMUST00000108021.2|Ptrh2|ENSMUSG00000072582.10|peptidyl-tRNA hydrolase 2
mm39_v1_chr15_+_54975713_54975799	0.0164058	GAGAACU	ENSMUST00000096433.10|Deptor|ENSMUSG00000022419.17|DEP domain containing MTOR-interacting protein
mm39_v1_chr17_-_12726591_12726614	0.0148128	GAGAACU	ENSMUST00000024595.4|Slc22a3|ENSMUSG00000023828.4|solute carrier family 22 (organic cation transporter), member 3
mm39_v1_chr7_-_37927399_37927440	0.0147909	GAGAACU	ENSMUST00000098513.6|Plekhf1|ENSMUSG00000074170.6|pleckstrin homology domain containing, family F (with FYVE domain) member 1
mm39_v1_chr7_-_7302468_7302532	0.0143835	GAGAACU	ENSMUST00000000619.8|Clcn4|ENSMUSG00000000605.10|chloride channel, voltage-sensitive 4
mm39_v1_chr10_-_86334700_86334730	0.0143039	GAGAACU	ENSMUST00000120638.8|Syn3|ENSMUSG00000059602.15|synapsin III
mm39_v1_chr12_-_46865709_46865720	0.0129141	GAGAACU	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr2_-_34716083_34716099	0.012667	GAGAACU	ENSMUST00000113077.8|Fbxw2|ENSMUSG00000035949.16|F-box and WD-40 domain protein 2	ENSMUST00000028220.10|Fbxw2|ENSMUSG00000035949.16|F-box and WD-40 domain protein 2
mm39_v1_chr1_+_180396478_180396525	0.0126228	GAGAACU	ENSMUST00000027777.12|Parp1|ENSMUSG00000026496.12|poly (ADP-ribose) polymerase family, member 1
mm39_v1_chr3_+_94320548_94320708	0.0100857	GAGAACU	ENSMUST00000166032.8|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000200486.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000196386.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000045245.10|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000197901.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000198041.2|Gm42463|ENSMUSG00000106032.2|predicted gene 42463
mm39_v1_chr12_+_80837284_80837348	0.00754469	GAGAACU	ENSMUST00000220238.2|Susd6|ENSMUSG00000021133.10|sushi domain containing 6	ENSMUST00000068519.7|Susd6|ENSMUSG00000021133.10|sushi domain containing 6
mm39_v1_chr7_-_66038033_66038098	0.00747669	GAGAACU	ENSMUST00000015277.14|Lrrk1|ENSMUSG00000015133.18|leucine-rich repeat kinase 1
mm39_v1_chr9_+_62746055_62746098	0.00676933	GAGAACU	ENSMUST00000034776.13|Cln6|ENSMUSG00000032245.13|ceroid-lipofuscinosis, neuronal 6
mm39_v1_chr12_-_83968507_83968708	0.00629302	GAGAACU	ENSMUST00000222439.2|Numb|ENSMUSG00000021224.16|NUMB endocytic adaptor protein	ENSMUST00000135962.8|Numb|ENSMUSG00000021224.16|NUMB endocytic adaptor protein	ENSMUST00000155112.8|Numb|ENSMUSG00000021224.16|NUMB endocytic adaptor protein	ENSMUST00000136848.8|Numb|ENSMUSG00000021224.16|NUMB endocytic adaptor protein	ENSMUST00000126943.2|Numb|ENSMUSG00000021224.16|NUMB endocytic adaptor protein	ENSMUST00000117217.8|Numb|ENSMUSG00000021224.16|NUMB endocytic adaptor protein
mm39_v1_chr5_-_96309849_96309956	0.00538634	GAGAACU	ENSMUST00000155901.8|Cnot6l|ENSMUSG00000034724.19|CCR4-NOT transcription complex, subunit 6-like
mm39_v1_chr3_-_103698853_103698879	0.00214096	GAGAACU	ENSMUST00000118317.8|Hipk1|ENSMUSG00000008730.18|homeodomain interacting protein kinase 1
mm39_v1_chr10_+_85763545_85763545	0.00104949	GAGAACU	ENSMUST00000170396.3|Ascl4|ENSMUSG00000085111.4|achaete-scute family bHLH transcription factor 4
mm39_v1_chr4_+_126915104_126915133	0.000825958	GAGAACU	ENSMUST00000030623.8|Sfpq|ENSMUSG00000028820.14|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm39_v1_chr10_+_80591030_80591073	0.000733877	GAGAACU	ENSMUST00000105336.9|Dot1l|ENSMUSG00000061589.15|DOT1-like, histone H3 methyltransferase (S. cerevisiae)
mm39_v1_chr9_-_99450948_99450961	0.000595953	GAGAACU	ENSMUST00000035043.12|Armc8|ENSMUSG00000032468.12|armadillo repeat containing 8
