mm39_v1_chr13_+_46571910_46571986	3.40456	GAGAUGA	ENSMUST00000037923.5|Rbm24|ENSMUSG00000038132.7|RNA binding motif protein 24
mm39_v1_chr1_-_72914036_72914050	2.79569	GAGAUGA	ENSMUST00000027377.9|Igfbp5|ENSMUSG00000026185.9|insulin-like growth factor binding protein 5
mm39_v1_chr10_+_17672004_17672088	2.59857	GAGAUGA	ENSMUST00000037964.7|Txlnb|ENSMUSG00000039891.7|taxilin beta
mm39_v1_chr4_+_141148068_141148109	2.56088	GAGAUGA	ENSMUST00000102486.5|Hspb7|ENSMUSG00000006221.8|heat shock protein family, member 7 (cardiovascular)
mm39_v1_chrX_-_102865546_102865598	2.19798	GAGAUGA	ENSMUST00000042664.10|Slc16a2|ENSMUSG00000033965.11|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm39_v1_chr11_-_88609048_88609136	2.09864	GAGAUGA	ENSMUST00000107909.8|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr8_-_116434517_116434533	2.02542	GAGAUGA	ENSMUST00000109104.2|Maf|ENSMUSG00000055435.7|avian musculoaponeurotic fibrosarcoma oncogene homolog
mm39_v1_chr15_-_11905697_11905760	1.9652	GAGAUGA	ENSMUST00000066529.5|Npr3|ENSMUSG00000022206.8|natriuretic peptide receptor 3	ENSMUST00000228603.2|Npr3|ENSMUSG00000022206.8|natriuretic peptide receptor 3
mm39_v1_chr9_-_20726344_20726365	1.83905	GAGAUGA	ENSMUST00000004201.8|Col5a3|ENSMUSG00000004098.8|collagen, type V, alpha 3
mm39_v1_chr6_-_38853097_38853167	1.81473	GAGAUGA	ENSMUST00000161779.8|Hipk2|ENSMUSG00000061436.16|homeodomain interacting protein kinase 2
mm39_v1_chr6_-_82751429_82751444	1.7764	GAGAUGA	ENSMUST00000000642.11|Hk2|ENSMUSG00000000628.11|hexokinase 2
mm39_v1_chr9_-_101128976_101129003	1.71183	GAGAUGA	ENSMUST00000075941.12|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr19_+_56276343_56276371	1.49461	GAGAUGA	ENSMUST00000095948.11|Habp2|ENSMUSG00000025075.15|hyaluronic acid binding protein 2
mm39_v1_chr16_+_42727926_42728047	1.45439	GAGAUGA	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr4_+_129030710_129030792	1.40962	GAGAUGA	ENSMUST00000102600.4|Fndc5|ENSMUSG00000001334.10|fibronectin type III domain containing 5
mm39_v1_chr15_+_58805605_58805685	1.35826	GAGAUGA	ENSMUST00000022980.5|Ndufb9|ENSMUSG00000022354.5|NADH:ubiquinone oxidoreductase subunit B9
mm39_v1_chr15_+_102875229_102875248	1.32102	GAGAUGA	ENSMUST00000001699.8|Hoxc10|ENSMUSG00000022484.8|homeobox C10
mm39_v1_chr7_-_115637970_115637985	1.21985	GAGAUGA	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr18_+_4921663_4921726	1.18707	GAGAUGA	ENSMUST00000143254.8|Svil|ENSMUSG00000024236.19|supervillin
mm39_v1_chr4_+_135933676_135933719	1.14317	GAGAUGA	ENSMUST00000047526.8|Asap3|ENSMUSG00000036995.8|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
mm39_v1_chr2_+_78699360_78699443	1.1385	GAGAUGA	ENSMUST00000028398.14|Ube2e3|ENSMUSG00000027011.15|ubiquitin-conjugating enzyme E2E 3
mm39_v1_chr17_-_12988492_12988588	1.12944	GAGAUGA	ENSMUST00000024599.14|Igf2r|ENSMUSG00000023830.15|insulin-like growth factor 2 receptor
mm39_v1_chr18_+_38383297_38383340	1.09561	GAGAUGA	ENSMUST00000025314.7|Dele1|ENSMUSG00000024442.7|DAP3 binding cell death enhancer 1	ENSMUST00000236078.2|Dele1|ENSMUSG00000024442.7|DAP3 binding cell death enhancer 1
mm39_v1_chr16_+_35891991_35892058	1.07475	GAGAUGA	ENSMUST00000164916.9|Ccdc58|ENSMUSG00000075229.12|coiled-coil domain containing 58
mm39_v1_chr4_+_116953218_116953280	1.04095	GAGAUGA	ENSMUST00000030443.12|Ptch2|ENSMUSG00000028681.12|patched 2
mm39_v1_chr4_+_123095297_123095322	1.01324	GAGAUGA	ENSMUST00000068262.6|Nt5c1a|ENSMUSG00000054958.7|5'-nucleotidase, cytosolic IA
mm39_v1_chr7_+_128125339_128125371	1.00064	GAGAUGA	ENSMUST00000033136.9|Bag3|ENSMUSG00000030847.9|BCL2-associated athanogene 3
mm39_v1_chrX_+_105230706_105230785	0.977196	GAGAUGA	ENSMUST00000081593.13|Pgk1|ENSMUSG00000062070.13|phosphoglycerate kinase 1
mm39_v1_chr9_+_30941924_30941997	0.931466	GAGAUGA	ENSMUST00000216649.2|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44	ENSMUST00000115222.10|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44
mm39_v1_chr11_+_60913386_60913397	0.886128	GAGAUGA	ENSMUST00000089184.11|Kcnj12|ENSMUSG00000042529.15|potassium inwardly-rectifying channel, subfamily J, member 12
mm39_v1_chr7_-_89166781_89166796	0.883592	GAGAUGA	ENSMUST00000041761.7|Prss23|ENSMUSG00000039405.8|protease, serine 23
mm39_v1_chr4_-_132149780_132149808	0.784169	GAGAUGA	ENSMUST00000102568.10|Phactr4|ENSMUSG00000066043.14|phosphatase and actin regulator 4
mm39_v1_chrX_-_139443926_139443944	0.778636	GAGAUGA	ENSMUST00000055738.12|Tsc22d3|ENSMUSG00000031431.14|TSC22 domain family, member 3
mm39_v1_chr19_+_4560500_4560516	0.745757	GAGAUGA	ENSMUST00000068004.13|Pcx|ENSMUSG00000024892.18|pyruvate carboxylase	ENSMUST00000224726.3|Pcx|ENSMUSG00000024892.18|pyruvate carboxylase
mm39_v1_chr19_-_47452840_47452894	0.741428	GAGAUGA	ENSMUST00000081619.10|Sh3pxd2a|ENSMUSG00000053617.13|SH3 and PX domains 2A
mm39_v1_chr11_-_115188337_115188406	0.730681	GAGAUGA	ENSMUST00000056153.8|Fads6|ENSMUSG00000044788.11|fatty acid desaturase domain family, member 6
mm39_v1_chr14_+_7030760_7030788	0.723982	GAGAUGA	ENSMUST00000055211.6|Lrrc3b|ENSMUSG00000045201.7|leucine rich repeat containing 3B
mm39_v1_chr19_-_17333972_17334031	0.719531	GAGAUGA	ENSMUST00000174236.8|Gcnt1|ENSMUSG00000038843.19|glucosaminyl (N-acetyl) transferase 1, core 2
mm39_v1_chr6_-_101354858_101354977	0.710912	GAGAUGA	ENSMUST00000075994.11|Pdzrn3|ENSMUSG00000035357.18|PDZ domain containing RING finger 3
mm39_v1_chr6_+_113460258_113460274	0.642071	GAGAUGA	ENSMUST00000032422.6|Creld1|ENSMUSG00000030284.12|cysteine-rich with EGF-like domains 1
mm39_v1_chr2_-_167032068_167032093	0.624386	GAGAUGA	ENSMUST00000059826.10|Kcnb1|ENSMUSG00000050556.10|potassium voltage gated channel, Shab-related subfamily, member 1
mm39_v1_chr4_-_120604445_120604602	0.620596	GAGAUGA	ENSMUST00000030376.8|Kcnq4|ENSMUSG00000028631.8|potassium voltage-gated channel, subfamily Q, member 4
mm39_v1_chr6_+_120813199_120813218	0.615356	GAGAUGA	ENSMUST00000009256.4|Bcl2l13|ENSMUSG00000009112.5|BCL2-like 13 (apoptosis facilitator)
mm39_v1_chr8_-_125675901_125676110	0.612904	GAGAUGA	ENSMUST00000034469.7|Egln1|ENSMUSG00000031987.7|egl-9 family hypoxia-inducible factor 1
mm39_v1_chr12_-_85386120_85386169	0.606557	GAGAUGA	ENSMUST00000040992.8|Nek9|ENSMUSG00000034290.10|NIMA (never in mitosis gene a)-related expressed kinase 9
mm39_v1_chr11_-_47270201_47270349	0.595344	GAGAUGA	ENSMUST00000077221.6|Sgcd|ENSMUSG00000020354.16|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm39_v1_chr3_-_27764571_27764616	0.581554	GAGAUGA	ENSMUST00000046157.10|Fndc3b|ENSMUSG00000039286.13|fibronectin type III domain containing 3B
mm39_v1_chr7_-_98010534_98010549	0.574391	GAGAUGA	ENSMUST00000165257.8|Tsku|ENSMUSG00000049580.13|tsukushi, small leucine rich proteoglycan
mm39_v1_chr7_+_45063079_45063145	0.562131	GAGAUGA	ENSMUST00000058879.8|Ntf5|ENSMUSG00000074121.4|neurotrophin 5
mm39_v1_chr6_-_59001455_59001534	0.534294	GAGAUGA	ENSMUST00000089860.12|Fam13a|ENSMUSG00000037709.14|family with sequence similarity 13, member A
mm39_v1_chr15_-_96597610_96597617	0.531444	GAGAUGA	ENSMUST00000023099.8|Slc38a2|ENSMUSG00000022462.8|solute carrier family 38, member 2
mm39_v1_chr12_+_86725459_86725580	0.521613	GAGAUGA	ENSMUST00000021681.4|Vash1|ENSMUSG00000021256.6|vasohibin 1
mm39_v1_chr15_-_50753061_50753118	0.516039	GAGAUGA	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr2_-_155771938_155771988	0.507339	GAGAUGA	ENSMUST00000152766.8|Uqcc1|ENSMUSG00000005882.19|ubiquinol-cytochrome c reductase complex assembly factor 1	ENSMUST00000139232.8|Uqcc1|ENSMUSG00000005882.19|ubiquinol-cytochrome c reductase complex assembly factor 1	ENSMUST00000109632.8|Uqcc1|ENSMUSG00000005882.19|ubiquinol-cytochrome c reductase complex assembly factor 1	ENSMUST00000006036.13|Uqcc1|ENSMUSG00000005882.19|ubiquinol-cytochrome c reductase complex assembly factor 1	ENSMUST00000142655.2|Uqcc1|ENSMUSG00000005882.19|ubiquinol-cytochrome c reductase complex assembly factor 1	ENSMUST00000159238.2|Uqcc1|ENSMUSG00000005882.19|ubiquinol-cytochrome c reductase complex assembly factor 1
mm39_v1_chr12_+_3857001_3857064	0.506022	GAGAUGA	ENSMUST00000020991.15|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A	ENSMUST00000172509.8|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A
mm39_v1_chr2_+_173579285_173579304	0.502269	GAGAUGA	ENSMUST00000067530.6|Vapb|ENSMUSG00000054455.6|vesicle-associated membrane protein, associated protein B and C
mm39_v1_chr19_+_10872778_10872790	0.500437	GAGAUGA	ENSMUST00000179297.3|Prpf19|ENSMUSG00000024735.14|pre-mRNA processing factor 19
mm39_v1_chr2_-_74489763_74489901	0.488115	GAGAUGA	ENSMUST00000173623.2|Evx2|ENSMUSG00000001815.16|even-skipped homeobox 2	ENSMUST00000001867.13|Evx2|ENSMUSG00000001815.16|even-skipped homeobox 2
mm39_v1_chr1_+_187730018_187730031	0.482161	GAGAUGA	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr9_+_62585108_62585125	0.476408	GAGAUGA	ENSMUST00000034774.9|Itga11|ENSMUSG00000032243.9|integrin alpha 11
mm39_v1_chr14_+_65596070_65596135	0.450594	GAGAUGA	ENSMUST00000066994.7|Zfp395|ENSMUSG00000034522.11|zinc finger protein 395
mm39_v1_chr10_-_43050516_43050565	0.446702	GAGAUGA	ENSMUST00000040275.9|Sobp|ENSMUSG00000038248.9|sine oculis binding protein
mm39_v1_chr11_+_105183463_105183495	0.424161	GAGAUGA	ENSMUST00000100335.10|Mrc2|ENSMUSG00000020695.15|mannose receptor, C type 2	ENSMUST00000021038.5|Mrc2|ENSMUSG00000020695.15|mannose receptor, C type 2
mm39_v1_chr4_-_58206596_58206616	0.421282	GAGAUGA	ENSMUST00000042850.9|Svep1|ENSMUSG00000028369.16|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm39_v1_chr10_+_121200984_121201063	0.417546	GAGAUGA	ENSMUST00000040344.7|Gns|ENSMUSG00000034707.8|glucosamine (N-acetyl)-6-sulfatase
mm39_v1_chr8_+_80366247_80366333	0.416903	GAGAUGA	ENSMUST00000173078.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4	ENSMUST00000173286.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4
mm39_v1_chr2_-_63928339_63928367	0.410766	GAGAUGA	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chrX_-_141749704_141749730	0.398194	GAGAUGA	ENSMUST00000041317.3|Ammecr1|ENSMUSG00000042225.4|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm39_v1_chr11_-_87878301_87878364	0.397684	GAGAUGA	ENSMUST00000020775.9|Dynll2|ENSMUSG00000020483.15|dynein light chain LC8-type 2
mm39_v1_chr1_-_45542442_45542442	0.389813	GAGAUGA	ENSMUST00000086430.5|Col5a2|ENSMUSG00000026042.17|collagen, type V, alpha 2
mm39_v1_chr7_+_67602565_67602576	0.389068	GAGAUGA	ENSMUST00000005671.10|Igf1r|ENSMUSG00000005533.11|insulin-like growth factor I receptor
mm39_v1_chr6_+_100681670_100681721	0.387382	GAGAUGA	ENSMUST00000032157.9|Gxylt2|ENSMUSG00000030074.10|glucoside xylosyltransferase 2
mm39_v1_chr15_-_102630589_102630613	0.384383	GAGAUGA	ENSMUST00000023818.11|Calcoco1|ENSMUSG00000023055.11|calcium binding and coiled coil domain 1
mm39_v1_chr12_+_52746158_52746186	0.376874	GAGAUGA	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr16_+_35803674_35803765	0.357934	GAGAUGA	ENSMUST00000004054.13|Kpna1|ENSMUSG00000022905.13|karyopherin (importin) alpha 1
mm39_v1_chr12_-_46865709_46865720	0.347593	GAGAUGA	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr2_-_160950936_160950950	0.341698	GAGAUGA	ENSMUST00000039782.14|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6	ENSMUST00000134178.8|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6
mm39_v1_chr4_+_62883796_62883854	0.337783	GAGAUGA	ENSMUST00000030043.13|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000107415.8|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000064814.6|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618
mm39_v1_chr12_-_119202527_119202599	0.332835	GAGAUGA	ENSMUST00000026360.9|Itgb8|ENSMUSG00000025321.15|integrin beta 8
mm39_v1_chr4_+_31964082_31964263	0.332367	GAGAUGA	ENSMUST00000037607.11|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000080933.13|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000108183.8|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000108184.3|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7
mm39_v1_chr19_-_42601202_42601252	0.331025	GAGAUGA	ENSMUST00000166128.2|Loxl4|ENSMUSG00000025185.15|lysyl oxidase-like 4	ENSMUST00000026190.14|Loxl4|ENSMUSG00000025185.15|lysyl oxidase-like 4	ENSMUST00000164786.8|Loxl4|ENSMUSG00000025185.15|lysyl oxidase-like 4
mm39_v1_chr11_+_30721726_30721812	0.324589	GAGAUGA	ENSMUST00000041231.14|Psme4|ENSMUSG00000040850.18|proteasome (prosome, macropain) activator subunit 4
mm39_v1_chr1_-_184543367_184543510	0.315578	GAGAUGA	ENSMUST00000048462.13|Mtarc1|ENSMUSG00000026621.14|mitochondrial amidoxime reducing component 1	ENSMUST00000110992.9|Mtarc1|ENSMUSG00000026621.14|mitochondrial amidoxime reducing component 1
mm39_v1_chr1_-_105284383_105284402	0.308598	GAGAUGA	ENSMUST00000058688.7|Rnf152|ENSMUSG00000047496.7|ring finger protein 152
mm39_v1_chr1_-_21149392_21149467	0.305545	GAGAUGA	ENSMUST00000037998.6|Tram2|ENSMUSG00000041779.6|translocating chain-associating membrane protein 2
mm39_v1_chr5_+_43390513_43390580	0.29699	GAGAUGA	ENSMUST00000166713.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000169035.8|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000114065.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2
mm39_v1_chr11_-_29464998_29465043	0.28207	GAGAUGA	ENSMUST00000133103.2|Prorsd1|ENSMUSG00000032673.6|prolyl-tRNA synthetase domain containing 1	ENSMUST00000039900.4|Prorsd1|ENSMUSG00000032673.6|prolyl-tRNA synthetase domain containing 1
mm39_v1_chr7_+_27878894_27878960	0.279863	GAGAUGA	ENSMUST00000085901.13|Dyrk1b|ENSMUSG00000002409.19|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	ENSMUST00000172761.8|Dyrk1b|ENSMUSG00000002409.19|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm39_v1_chr8_+_40964818_40964829	0.276069	GAGAUGA	ENSMUST00000098817.4|Vps37a|ENSMUSG00000031600.12|vacuolar protein sorting 37A
mm39_v1_chr7_-_109585649_109585676	0.271143	GAGAUGA	ENSMUST00000094097.12|Tmem41b|ENSMUSG00000047554.15|transmembrane protein 41B
mm39_v1_chr5_+_32293145_32293201	0.264733	GAGAUGA	ENSMUST00000031017.11|Fosl2|ENSMUSG00000029135.11|fos-like antigen 2
mm39_v1_chr8_+_31601837_31601919	0.248919	GAGAUGA	ENSMUST00000046941.8|Rnf122|ENSMUSG00000039328.12|ring finger protein 122	ENSMUST00000217278.2|Rnf122|ENSMUSG00000039328.12|ring finger protein 122
mm39_v1_chr9_-_107167046_107167076	0.247467	GAGAUGA	ENSMUST00000035194.8|Mapkapk3|ENSMUSG00000032577.17|mitogen-activated protein kinase-activated protein kinase 3
mm39_v1_chr1_-_157240138_157240191	0.247391	GAGAUGA	ENSMUST00000078308.13|Rasal2|ENSMUSG00000070565.12|RAS protein activator like 2
mm39_v1_chr12_+_91367764_91367796	0.247378	GAGAUGA	ENSMUST00000021346.14|Tshr|ENSMUSG00000020963.16|thyroid stimulating hormone receptor	ENSMUST00000021343.8|Tshr|ENSMUSG00000020963.16|thyroid stimulating hormone receptor
mm39_v1_chr17_-_74257164_74257186	0.238595	GAGAUGA	ENSMUST00000024866.6|Xdh|ENSMUSG00000024066.10|xanthine dehydrogenase
mm39_v1_chr12_-_21336285_21336299	0.23408	GAGAUGA	ENSMUST00000076260.12|Itgb1bp1|ENSMUSG00000062352.16|integrin beta 1 binding protein 1
mm39_v1_chr13_+_24985640_24985640	0.229569	GAGAUGA	ENSMUST00000019276.12|BC005537|ENSMUSG00000019132.12|cDNA sequence BC005537
mm39_v1_chr17_-_42922286_42922286	0.22092	GAGAUGA	ENSMUST00000068355.8|Opn5|ENSMUSG00000043972.9|opsin 5
mm39_v1_chr11_+_57899890_57899915	0.215505	GAGAUGA	ENSMUST00000071487.13|Larp1|ENSMUSG00000037331.16|La ribonucleoprotein domain family, member 1	ENSMUST00000178636.2|Larp1|ENSMUSG00000037331.16|La ribonucleoprotein domain family, member 1
mm39_v1_chr6_+_134012602_134012683	0.214873	GAGAUGA	ENSMUST00000081028.13|Etv6|ENSMUSG00000030199.17|ets variant 6	ENSMUST00000111963.8|Etv6|ENSMUSG00000030199.17|ets variant 6
mm39_v1_chr1_+_87254719_87254728	0.214707	GAGAUGA	ENSMUST00000027475.15|Gigyf2|ENSMUSG00000048000.16|GRB10 interacting GYF protein 2
mm39_v1_chr4_+_132001680_132001744	0.214141	GAGAUGA	ENSMUST00000030731.11|Taf12|ENSMUSG00000028899.12|TATA-box binding protein associated factor 12	ENSMUST00000105963.2|Taf12|ENSMUSG00000028899.12|TATA-box binding protein associated factor 12
mm39_v1_chr7_-_134539993_134540159	0.207	GAGAUGA	ENSMUST00000171394.3|Insyn2a|ENSMUSG00000073805.6|inhibitory synaptic factor 2A
mm39_v1_chr8_+_105897300_105897446	0.201221	GAGAUGA	ENSMUST00000052209.9|Cbfb|ENSMUSG00000031885.15|core binding factor beta	ENSMUST00000109392.9|Cbfb|ENSMUSG00000031885.15|core binding factor beta	ENSMUST00000109395.8|Cbfb|ENSMUSG00000031885.15|core binding factor beta
mm39_v1_chr4_+_20008357_20008452	0.198386	GAGAUGA	ENSMUST00000117632.8|Ttpa|ENSMUSG00000073988.14|tocopherol (alpha) transfer protein	ENSMUST00000098244.2|Ttpa|ENSMUSG00000073988.14|tocopherol (alpha) transfer protein
mm39_v1_chr7_+_16043502_16043567	0.189803	GAGAUGA	ENSMUST00000002152.13|Bbc3|ENSMUSG00000002083.14|BCL2 binding component 3
mm39_v1_chr12_-_51738666_51738738	0.189722	GAGAUGA	ENSMUST00000013130.15|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3	ENSMUST00000169503.4|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3
mm39_v1_chr15_-_73056713_73056822	0.18849	GAGAUGA	ENSMUST00000044113.12|Ago2|ENSMUSG00000036698.12|argonaute RISC catalytic subunit 2
mm39_v1_chr3_+_30847024_30847024	0.175464	GAGAUGA	ENSMUST00000029256.9|Sec62|ENSMUSG00000027706.9|SEC62 homolog (S. cerevisiae)
mm39_v1_chr2_-_150327011_150327011	0.164932	GAGAUGA	ENSMUST00000109914.2|Zfp345|ENSMUSG00000074731.4|zinc finger protein 345
mm39_v1_chrX_-_138772383_138772426	0.161287	GAGAUGA	ENSMUST00000033811.14|Morc4|ENSMUSG00000031434.16|microrchidia 4	ENSMUST00000087401.12|Morc4|ENSMUSG00000031434.16|microrchidia 4
mm39_v1_chr9_+_45749869_45749892	0.15823	GAGAUGA	ENSMUST00000078111.11|Bace1|ENSMUSG00000032086.13|beta-site APP cleaving enzyme 1	ENSMUST00000034591.11|Bace1|ENSMUSG00000032086.13|beta-site APP cleaving enzyme 1
mm39_v1_chr6_-_88022172_88022252	0.154865	GAGAUGA	ENSMUST00000203674.3|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000204126.2|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000113596.8|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000113600.10|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family
mm39_v1_chr19_-_12773472_12773510	0.153669	GAGAUGA	ENSMUST00000038627.9|Zfp91|ENSMUSG00000024695.17|zinc finger protein 91
mm39_v1_chr7_-_121620366_121620445	0.152486	GAGAUGA	ENSMUST00000033160.15|Gga2|ENSMUSG00000030872.15|golgi associated, gamma adaptin ear containing, ARF binding protein 2
mm39_v1_chr11_+_117545618_117545655	0.150076	GAGAUGA	ENSMUST00000106344.8|Tnrc6c|ENSMUSG00000025571.14|trinucleotide repeat containing 6C
mm39_v1_chrX_-_103244784_103244810	0.144607	GAGAUGA	ENSMUST00000118314.8|Nexmif|ENSMUSG00000046449.16|neurite extension and migration factor
mm39_v1_chr2_+_71617266_71617322	0.140583	GAGAUGA	ENSMUST00000112101.8|Itga6|ENSMUSG00000027111.17|integrin alpha 6	ENSMUST00000028522.10|Itga6|ENSMUSG00000027111.17|integrin alpha 6
mm39_v1_chr5_-_143717970_143718072	0.138053	GAGAUGA	ENSMUST00000053287.6|Usp42|ENSMUSG00000051306.8|ubiquitin specific peptidase 42
mm39_v1_chr5_+_103902020_103902056	0.130664	GAGAUGA	ENSMUST00000054979.10|Aff1|ENSMUSG00000029313.19|AF4/FMR2 family, member 1
mm39_v1_chr13_-_93636224_93636333	0.130102	GAGAUGA	ENSMUST00000220513.2|Jmy|ENSMUSG00000021690.11|junction-mediating and regulatory protein	ENSMUST00000065537.9|Jmy|ENSMUSG00000021690.11|junction-mediating and regulatory protein
mm39_v1_chr19_-_5168251_5168350	0.129246	GAGAUGA	ENSMUST00000113728.8|Klc2|ENSMUSG00000024862.17|kinesin light chain 2	ENSMUST00000113727.8|Klc2|ENSMUSG00000024862.17|kinesin light chain 2	ENSMUST00000025798.13|Klc2|ENSMUSG00000024862.17|kinesin light chain 2
mm39_v1_chrX_+_47430221_47430295	0.126941	GAGAUGA	ENSMUST00000136348.8|Bcorl1|ENSMUSG00000036959.16|BCL6 co-repressor-like 1
mm39_v1_chr8_-_106553822_106553982	0.125897	GAGAUGA	ENSMUST00000239468.2|Ranbp10|ENSMUSG00000037415.8|RAN binding protein 10	ENSMUST00000041400.6|Ranbp10|ENSMUSG00000037415.8|RAN binding protein 10
mm39_v1_chr7_+_79992839_79992910	0.12028	GAGAUGA	ENSMUST00000032747.7|Hddc3|ENSMUSG00000030532.7|HD domain containing 3	ENSMUST00000206480.2|Hddc3|ENSMUSG00000030532.7|HD domain containing 3	ENSMUST00000206074.2|Hddc3|ENSMUSG00000030532.7|HD domain containing 3	ENSMUST00000206122.2|Hddc3|ENSMUSG00000030532.7|HD domain containing 3
mm39_v1_chr10_-_59277570_59277630	0.107458	GAGAUGA	ENSMUST00000009798.5|Oit3|ENSMUSG00000009654.5|oncoprotein induced transcript 3
mm39_v1_chr15_-_97729341_97729393	0.10578	GAGAUGA	ENSMUST00000079838.14|Hdac7|ENSMUSG00000022475.20|histone deacetylase 7	ENSMUST00000118294.8|Hdac7|ENSMUSG00000022475.20|histone deacetylase 7
mm39_v1_chr11_+_105480796_105480857	0.103724	GAGAUGA	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr6_+_8209216_8209265	0.102967	GAGAUGA	ENSMUST00000040017.8|Mios|ENSMUSG00000042447.14|meiosis regulator for oocyte development
mm39_v1_chr5_+_69714279_69714437	0.100703	GAGAUGA	ENSMUST00000087228.11|Guf1|ENSMUSG00000029208.17|GUF1 homolog, GTPase	ENSMUST00000031113.13|Guf1|ENSMUSG00000029208.17|GUF1 homolog, GTPase	ENSMUST00000173205.3|Guf1|ENSMUSG00000029208.17|GUF1 homolog, GTPase
mm39_v1_chr2_-_84508385_84508462	0.0994253	GAGAUGA	ENSMUST00000189772.2|Gm28635|ENSMUSG00000101645.2|predicted gene 28635	ENSMUST00000053664.9|Tmx2|ENSMUSG00000050043.17|thioredoxin-related transmembrane protein 2	ENSMUST00000111664.8|Tmx2|ENSMUSG00000050043.17|thioredoxin-related transmembrane protein 2
mm39_v1_chr1_+_138891447_138891539	0.092447	GAGAUGA	ENSMUST00000168527.8|Dennd1b|ENSMUSG00000056268.16|DENN/MADD domain containing 1B
mm39_v1_chr14_-_73622638_73622751	0.0882483	GAGAUGA	ENSMUST00000228637.2|Itm2b|ENSMUSG00000022108.9|integral membrane protein 2B	ENSMUST00000022704.9|Itm2b|ENSMUSG00000022108.9|integral membrane protein 2B
mm39_v1_chr2_-_132089543_132089574	0.0866987	GAGAUGA	ENSMUST00000110164.8|Tmem230|ENSMUSG00000027341.11|transmembrane protein 230
mm39_v1_chr2_-_163261439_163261469	0.0756561	GAGAUGA	ENSMUST00000046908.10|Oser1|ENSMUSG00000035399.13|oxidative stress responsive serine rich 1
mm39_v1_chrX_+_36137948_36137999	0.0738558	GAGAUGA	ENSMUST00000016452.11|Ube2a|ENSMUSG00000016308.13|ubiquitin-conjugating enzyme E2A	ENSMUST00000202991.4|Ube2a|ENSMUSG00000016308.13|ubiquitin-conjugating enzyme E2A	ENSMUST00000201068.4|Ube2a|ENSMUSG00000016308.13|ubiquitin-conjugating enzyme E2A	ENSMUST00000200835.4|Ube2a|ENSMUSG00000016308.13|ubiquitin-conjugating enzyme E2A
mm39_v1_chr12_-_83968507_83968708	0.0700535	GAGAUGA	ENSMUST00000222439.2|Numb|ENSMUSG00000021224.16|NUMB endocytic adaptor protein	ENSMUST00000135962.8|Numb|ENSMUSG00000021224.16|NUMB endocytic adaptor protein	ENSMUST00000155112.8|Numb|ENSMUSG00000021224.16|NUMB endocytic adaptor protein	ENSMUST00000136848.8|Numb|ENSMUSG00000021224.16|NUMB endocytic adaptor protein	ENSMUST00000126943.2|Numb|ENSMUSG00000021224.16|NUMB endocytic adaptor protein	ENSMUST00000117217.8|Numb|ENSMUSG00000021224.16|NUMB endocytic adaptor protein
mm39_v1_chr7_+_18659787_18659826	0.0692758	GAGAUGA	ENSMUST00000032571.10|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2	ENSMUST00000220302.2|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2
mm39_v1_chr18_+_36812246_36812306	0.0554391	GAGAUGA	ENSMUST00000186538.7|Slc35a4|ENSMUSG00000033272.13|solute carrier family 35, member A4
mm39_v1_chrX_+_9066105_9066147	0.0544833	GAGAUGA	ENSMUST00000069763.3|Lancl3|ENSMUSG00000047344.10|LanC lantibiotic synthetase component C-like 3 (bacterial)
mm39_v1_chr15_-_103163860_103163879	0.0430334	GAGAUGA	ENSMUST00000075192.13|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2
mm39_v1_chr2_+_180351910_180351994	0.042899	GAGAUGA	ENSMUST00000029090.9|Gid8|ENSMUSG00000027573.12|GID complex subunit 8
mm39_v1_chr6_-_71417607_71417630	0.0408514	GAGAUGA	ENSMUST00000002292.15|Rmnd5a|ENSMUSG00000002222.15|required for meiotic nuclear division 5 homolog A
mm39_v1_chr11_-_102907991_102908004	0.0394679	GAGAUGA	ENSMUST00000021313.9|Dcakd|ENSMUSG00000020935.9|dephospho-CoA kinase domain containing
mm39_v1_chr11_+_115272732_115272759	0.0294064	GAGAUGA	ENSMUST00000053288.6|Cdr2l|ENSMUSG00000050910.6|cerebellar degeneration-related protein 2-like
mm39_v1_chr4_-_126861918_126861947	0.0180064	GAGAUGA	ENSMUST00000106108.9|Zmym4|ENSMUSG00000042446.17|zinc finger, MYM-type 4
mm39_v1_chr18_-_77652820_77652858	0.0102069	GAGAUGA	ENSMUST00000026494.14|Rnf165|ENSMUSG00000025427.16|ring finger protein 165	ENSMUST00000182024.2|Rnf165|ENSMUSG00000025427.16|ring finger protein 165
mm39_v1_chr15_-_93173032_93173060	0.00898603	GAGAUGA	ENSMUST00000057896.5|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000049484.13|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000230063.2|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1
mm39_v1_chr3_+_95532282_95532332	0.00607693	GAGAUGA	ENSMUST00000058230.13|Ensa|ENSMUSG00000038619.13|endosulfine alpha	ENSMUST00000037983.6|Ensa|ENSMUSG00000038619.13|endosulfine alpha
mm39_v1_chr15_-_103148239_103148297	0.00419014	GAGAUGA	ENSMUST00000118152.8|Cbx5|ENSMUSG00000009575.15|chromobox 5
mm39_v1_chr17_+_46513666_46513782	0.00394107	GAGAUGA	ENSMUST00000087031.7|Xpo5|ENSMUSG00000067150.7|exportin 5
mm39_v1_chr1_+_36550948_36550987	0.00195378	GAGAUGA	ENSMUST00000001166.14|Cnnm3|ENSMUSG00000001138.14|cyclin M3	ENSMUST00000097776.4|Cnnm3|ENSMUSG00000001138.14|cyclin M3
mm39_v1_chr5_+_103573367_103573367	0.000105857	GAGAUGA	ENSMUST00000048957.11|Ptpn13|ENSMUSG00000034573.15|protein tyrosine phosphatase, non-receptor type 13
