mm39_v1_chr9_-_71678814_71678884	3.99948	GAUUGUC	ENSMUST00000122065.2|Cgnl1|ENSMUSG00000032232.15|cingulin-like 1	ENSMUST00000121322.8|Cgnl1|ENSMUSG00000032232.15|cingulin-like 1	ENSMUST00000072899.9|Cgnl1|ENSMUSG00000032232.15|cingulin-like 1
mm39_v1_chr16_+_24212284_24212320	3.78459	GAUUGUC	ENSMUST00000038053.14|Lpp|ENSMUSG00000033306.16|LIM domain containing preferred translocation partner in lipoma
mm39_v1_chr1_+_130754413_130754625	3.41123	GAUUGUC	ENSMUST00000027675.14|Pigr|ENSMUSG00000026417.14|polymeric immunoglobulin receptor	ENSMUST00000133792.8|Pigr|ENSMUSG00000026417.14|polymeric immunoglobulin receptor
mm39_v1_chr7_+_89053562_89053609	3.06586	GAUUGUC	ENSMUST00000058755.5|Fzd4|ENSMUSG00000049791.5|frizzled class receptor 4
mm39_v1_chr19_+_44977512_44977555	2.77564	GAUUGUC	ENSMUST00000026225.15|Sema4g|ENSMUSG00000025207.17|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm39_v1_chr7_-_80052491_80052510	2.61319	GAUUGUC	ENSMUST00000122232.8|Furin|ENSMUSG00000030530.16|furin (paired basic amino acid cleaving enzyme)
mm39_v1_chr18_+_75953244_75953308	2.57363	GAUUGUC	ENSMUST00000058997.15|Zbtb7c|ENSMUSG00000044646.16|zinc finger and BTB domain containing 7C
mm39_v1_chr14_-_4808744_4808823	2.45021	GAUUGUC	ENSMUST00000022303.17|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta	ENSMUST00000091471.12|Thrb|ENSMUSG00000021779.20|thyroid hormone receptor beta
mm39_v1_chr5_+_65505657_65505689	2.2001	GAUUGUC	ENSMUST00000031096.11|Klb|ENSMUSG00000029195.11|klotho beta
mm39_v1_chr4_+_99952988_99953064	2.16969	GAUUGUC	ENSMUST00000039630.6|Ror1|ENSMUSG00000035305.6|receptor tyrosine kinase-like orphan receptor 1
mm39_v1_chr17_-_43187280_43187368	2.12941	GAUUGUC	ENSMUST00000024709.9|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein	ENSMUST00000233476.2|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein
mm39_v1_chr1_-_64776890_64776915	2.10305	GAUUGUC	ENSMUST00000116133.4|Fzd5|ENSMUSG00000045005.10|frizzled class receptor 5	ENSMUST00000063982.7|Fzd5|ENSMUSG00000045005.10|frizzled class receptor 5
mm39_v1_chr4_+_8691303_8691381	1.99915	GAUUGUC	ENSMUST00000051558.10|Chd7|ENSMUSG00000041235.13|chromodomain helicase DNA binding protein 7
mm39_v1_chr8_+_107237483_107237557	1.95838	GAUUGUC	ENSMUST00000080797.8|Cdh3|ENSMUSG00000061048.9|cadherin 3
mm39_v1_chr6_-_31540913_31540924	1.92474	GAUUGUC	ENSMUST00000026698.8|Podxl|ENSMUSG00000025608.10|podocalyxin-like
mm39_v1_chr13_+_72776921_72776967	1.90179	GAUUGUC	ENSMUST00000074372.6|Irx2|ENSMUSG00000001504.11|Iroquois homeobox 2
mm39_v1_chr5_-_4154681_4154802	1.87804	GAUUGUC	ENSMUST00000001507.5|Cyp51|ENSMUSG00000001467.6|cytochrome P450, family 51
mm39_v1_chr2_+_74542255_74542283	1.87645	GAUUGUC	ENSMUST00000111983.9|Hoxd3|ENSMUSG00000079277.10|homeobox D3
mm39_v1_chr16_+_42727926_42728047	1.81475	GAUUGUC	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr5_+_64960705_64960731	1.80074	GAUUGUC	ENSMUST00000165536.8|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr6_+_54572096_54572250	1.79711	GAUUGUC	ENSMUST00000119706.8|Plekha8|ENSMUSG00000005225.16|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
mm39_v1_chr16_+_58228806_58228886	1.7966	GAUUGUC	ENSMUST00000046663.8|Dcbld2|ENSMUSG00000035107.14|discoidin, CUB and LCCL domain containing 2
mm39_v1_chr19_-_23425757_23425768	1.78751	GAUUGUC	ENSMUST00000036069.8|Mamdc2|ENSMUSG00000033207.8|MAM domain containing 2
mm39_v1_chr19_+_59446804_59446883	1.75639	GAUUGUC	ENSMUST00000062216.4|Emx2|ENSMUSG00000043969.5|empty spiracles homeobox 2
mm39_v1_chr5_+_141227245_141227298	1.73677	GAUUGUC	ENSMUST00000085774.11|Sdk1|ENSMUSG00000039683.17|sidekick cell adhesion molecule 1
mm39_v1_chr13_-_116446166_116446235	1.64838	GAUUGUC	ENSMUST00000036060.13|Isl1|ENSMUSG00000042258.14|ISL1 transcription factor, LIM/homeodomain
mm39_v1_chr19_+_27194757_27194825	1.64565	GAUUGUC	ENSMUST00000047645.13|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor	ENSMUST00000167487.8|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor
mm39_v1_chr3_-_131138541_131138589	1.63175	GAUUGUC	ENSMUST00000090246.5|Sgms2|ENSMUSG00000050931.8|sphingomyelin synthase 2	ENSMUST00000126569.2|Sgms2|ENSMUSG00000050931.8|sphingomyelin synthase 2
mm39_v1_chr4_-_55532453_55532485	1.60355	GAUUGUC	ENSMUST00000132746.2|Klf4|ENSMUSG00000003032.9|Kruppel-like factor 4 (gut)	ENSMUST00000107619.3|Klf4|ENSMUSG00000003032.9|Kruppel-like factor 4 (gut)
mm39_v1_chr9_+_68561042_68561068	1.50541	GAUUGUC	ENSMUST00000034766.14|Rora|ENSMUSG00000032238.18|RAR-related orphan receptor alpha
mm39_v1_chr2_-_63928339_63928367	1.44011	GAUUGUC	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr19_+_41471067_41471128	1.41817	GAUUGUC	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr15_-_34679321_34679358	1.38047	GAUUGUC	ENSMUST00000040791.9|Nipal2|ENSMUSG00000038879.9|NIPA-like domain containing 2
mm39_v1_chr11_+_118913788_118913932	1.35846	GAUUGUC	ENSMUST00000026662.8|Cbx2|ENSMUSG00000025577.8|chromobox 2
mm39_v1_chr11_+_80701001_80701001	1.35818	GAUUGUC	ENSMUST00000040865.9|Tmem98|ENSMUSG00000035413.9|transmembrane protein 98
mm39_v1_chr5_-_76452365_76452398	1.34492	GAUUGUC	ENSMUST00000075159.5|Clock|ENSMUSG00000029238.12|circadian locomotor output cycles kaput
mm39_v1_chr17_-_63806963_63807070	1.32396	GAUUGUC	ENSMUST00000024761.13|Fbxl17|ENSMUSG00000023965.14|F-box and leucine-rich repeat protein 17
mm39_v1_chr5_-_51711237_51711264	1.31776	GAUUGUC	ENSMUST00000132734.8|Ppargc1a|ENSMUSG00000029167.14|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm39_v1_chr7_+_78922947_78922973	1.28114	GAUUGUC	ENSMUST00000037315.13|Abhd2|ENSMUSG00000039202.13|abhydrolase domain containing 2
mm39_v1_chr9_+_30941924_30941997	1.27582	GAUUGUC	ENSMUST00000216649.2|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44	ENSMUST00000115222.10|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44
mm39_v1_chr13_+_108350923_108350988	1.27182	GAUUGUC	ENSMUST00000022207.10|Elovl7|ENSMUSG00000021696.10|ELOVL family member 7, elongation of long chain fatty acids (yeast)
mm39_v1_chr10_+_27950809_27950870	1.23951	GAUUGUC	ENSMUST00000166468.2|Ptprk|ENSMUSG00000019889.11|protein tyrosine phosphatase, receptor type, K	ENSMUST00000218359.2|Ptprk|ENSMUSG00000019889.11|protein tyrosine phosphatase, receptor type, K	ENSMUST00000218276.2|Ptprk|ENSMUSG00000019889.11|protein tyrosine phosphatase, receptor type, K
mm39_v1_chr3_+_89325750_89325879	1.21781	GAUUGUC	ENSMUST00000039110.12|Shc1|ENSMUSG00000042626.14|src homology 2 domain-containing transforming protein C1	ENSMUST00000125036.8|Shc1|ENSMUSG00000042626.14|src homology 2 domain-containing transforming protein C1	ENSMUST00000191485.7|Shc1|ENSMUSG00000042626.14|src homology 2 domain-containing transforming protein C1	ENSMUST00000154791.8|Shc1|ENSMUSG00000042626.14|src homology 2 domain-containing transforming protein C1
mm39_v1_chr2_+_172187485_172187513	1.20446	GAUUGUC	ENSMUST00000028995.5|Fam210b|ENSMUSG00000027495.5|family with sequence similarity 210, member B
mm39_v1_chr3_-_9675130_9675146	1.17397	GAUUGUC	ENSMUST00000041124.13|Zfp704|ENSMUSG00000040209.13|zinc finger protein 704
mm39_v1_chr1_-_105284383_105284402	1.14554	GAUUGUC	ENSMUST00000058688.7|Rnf152|ENSMUSG00000047496.7|ring finger protein 152
mm39_v1_chr8_-_84059048_84059121	1.1129	GAUUGUC	ENSMUST00000177594.8|Elmod2|ENSMUSG00000035151.13|ELMO/CED-12 domain containing 2	ENSMUST00000053902.4|Elmod2|ENSMUSG00000035151.13|ELMO/CED-12 domain containing 2
mm39_v1_chr9_-_43017249_43017322	1.08892	GAUUGUC	ENSMUST00000165665.9|Arhgef12|ENSMUSG00000059495.15|Rho guanine nucleotide exchange factor (GEF) 12
mm39_v1_chr13_+_9143995_9144018	1.07148	GAUUGUC	ENSMUST00000091829.4|Larp4b|ENSMUSG00000033499.15|La ribonucleoprotein domain family, member 4B
mm39_v1_chr1_-_165830160_165830182	1.06911	GAUUGUC	ENSMUST00000111429.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000176800.2|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000177358.8|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr2_-_168608949_168608965	1.04837	GAUUGUC	ENSMUST00000075044.10|Sall4|ENSMUSG00000027547.18|spalt like transcription factor 4
mm39_v1_chr1_-_165762469_165762605	1.04815	GAUUGUC	ENSMUST00000069609.12|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111427.9|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111426.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr10_-_125164399_125164410	1.0258	GAUUGUC	ENSMUST00000063318.10|Slc16a7|ENSMUSG00000020102.16|solute carrier family 16 (monocarboxylic acid transporters), member 7
mm39_v1_chr15_+_58287305_58287361	0.995421	GAUUGUC	ENSMUST00000037270.5|Fam91a1|ENSMUSG00000037119.5|family with sequence similarity 91, member A1
mm39_v1_chr9_-_66421868_66421891	0.987666	GAUUGUC	ENSMUST00000056890.10|Fbxl22|ENSMUSG00000050503.10|F-box and leucine-rich repeat protein 22
mm39_v1_chr5_+_43390513_43390580	0.970182	GAUUGUC	ENSMUST00000166713.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000169035.8|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000114065.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2
mm39_v1_chr10_-_121312212_121312252	0.965522	GAUUGUC	ENSMUST00000026902.9|Rassf3|ENSMUSG00000025795.9|Ras association (RalGDS/AF-6) domain family member 3
mm39_v1_chr11_+_53241561_53241660	0.948363	GAUUGUC	ENSMUST00000060945.12|Aff4|ENSMUSG00000049470.14|AF4/FMR2 family, member 4
mm39_v1_chr1_-_156546600_156546656	0.946499	GAUUGUC	ENSMUST00000122424.8|Fam20b|ENSMUSG00000033557.18|FAM20B, glycosaminoglycan xylosylkinase	ENSMUST00000086153.8|Fam20b|ENSMUSG00000033557.18|FAM20B, glycosaminoglycan xylosylkinase
mm39_v1_chr5_+_77413282_77413396	0.940986	GAUUGUC	ENSMUST00000080359.12|Rest|ENSMUSG00000029249.16|RE1-silencing transcription factor
mm39_v1_chr3_+_58322119_58322161	0.911804	GAUUGUC	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr3_+_145464413_145464451	0.891118	GAUUGUC	ENSMUST00000029845.15|Ddah1|ENSMUSG00000028194.16|dimethylarginine dimethylaminohydrolase 1
mm39_v1_chr2_+_125876566_125876600	0.847427	GAUUGUC	ENSMUST00000064794.14|Fgf7|ENSMUSG00000027208.15|fibroblast growth factor 7
mm39_v1_chr10_+_128212953_128213024	0.837426	GAUUGUC	ENSMUST00000014642.10|Ankrd52|ENSMUSG00000014498.10|ankyrin repeat domain 52
mm39_v1_chr6_-_38230890_38231089	0.824417	GAUUGUC	ENSMUST00000117556.8|D630045J12Rik|ENSMUSG00000063455.17|RIKEN cDNA D630045J12 gene	ENSMUST00000169256.5|D630045J12Rik|ENSMUSG00000063455.17|RIKEN cDNA D630045J12 gene
mm39_v1_chr14_-_25769457_25769513	0.820419	GAUUGUC	ENSMUST00000069180.8|Zcchc24|ENSMUSG00000055538.8|zinc finger, CCHC domain containing 24
mm39_v1_chr2_+_165497157_165497273	0.801563	GAUUGUC	ENSMUST00000063433.8|Eya2|ENSMUSG00000017897.19|EYA transcriptional coactivator and phosphatase 2
mm39_v1_chr2_-_34803988_34804055	0.763721	GAUUGUC	ENSMUST00000028232.7|Phf19|ENSMUSG00000026873.10|PHD finger protein 19	ENSMUST00000202907.2|Phf19|ENSMUSG00000026873.10|PHD finger protein 19
mm39_v1_chr1_-_155617773_155617790	0.761281	GAUUGUC	ENSMUST00000027740.14|Lhx4|ENSMUSG00000026468.15|LIM homeobox protein 4
mm39_v1_chr4_+_97665843_97665870	0.754296	GAUUGUC	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr7_-_115637970_115637985	0.741951	GAUUGUC	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr14_-_48902555_48902572	0.74122	GAUUGUC	ENSMUST00000118578.9|Otx2|ENSMUSG00000021848.17|orthodenticle homeobox 2
mm39_v1_chr4_+_45342069_45342128	0.734344	GAUUGUC	ENSMUST00000155551.8|Dcaf10|ENSMUSG00000035572.17|DDB1 and CUL4 associated factor 10
mm39_v1_chr17_+_26780453_26780479	0.732155	GAUUGUC	ENSMUST00000167662.8|Ergic1|ENSMUSG00000001576.16|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
mm39_v1_chr5_-_136596299_136596390	0.718	GAUUGUC	ENSMUST00000004097.16|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr11_-_116089866_116089916	0.68162	GAUUGUC	ENSMUST00000066587.12|Acox1|ENSMUSG00000020777.17|acyl-Coenzyme A oxidase 1, palmitoyl
mm39_v1_chr13_+_111822712_111822745	0.679244	GAUUGUC	ENSMUST00000109272.9|Mier3|ENSMUSG00000032727.15|MIER family member 3
mm39_v1_chr9_-_65734826_65734859	0.674778	GAUUGUC	ENSMUST00000159109.2|Zfp609|ENSMUSG00000040524.10|zinc finger protein 609
mm39_v1_chr19_+_6952319_6952371	0.672804	GAUUGUC	ENSMUST00000070850.8|Ppp1r14b|ENSMUSG00000056612.8|protein phosphatase 1, regulatory inhibitor subunit 14B
mm39_v1_chr8_-_8711211_8711250	0.651955	GAUUGUC	ENSMUST00000001319.15|Efnb2|ENSMUSG00000001300.17|ephrin B2
mm39_v1_chr6_-_30304512_30304569	0.646909	GAUUGUC	ENSMUST00000094543.3|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H	ENSMUST00000102993.10|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H
mm39_v1_chr9_+_121946321_121946401	0.636726	GAUUGUC	ENSMUST00000119215.9|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000146832.8|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000118886.9|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000120173.9|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000139181.2|Snrk|ENSMUSG00000038145.18|SNF related kinase
mm39_v1_chr8_-_34419826_34419891	0.628297	GAUUGUC	ENSMUST00000033995.14|Rbpms|ENSMUSG00000031586.18|RNA binding protein gene with multiple splicing	ENSMUST00000033994.15|Rbpms|ENSMUSG00000031586.18|RNA binding protein gene with multiple splicing	ENSMUST00000191473.7|Rbpms|ENSMUSG00000031586.18|RNA binding protein gene with multiple splicing	ENSMUST00000053251.12|Rbpms|ENSMUSG00000031586.18|RNA binding protein gene with multiple splicing
mm39_v1_chr3_+_98289755_98289836	0.597117	GAUUGUC	ENSMUST00000056096.15|Zfp697|ENSMUSG00000050064.15|zinc finger protein 697
mm39_v1_chr4_+_43875524_43875558	0.558751	GAUUGUC	ENSMUST00000030198.7|Reck|ENSMUSG00000028476.14|reversion-inducing-cysteine-rich protein with kazal motifs
mm39_v1_chr10_+_4561974_4562075	0.550403	GAUUGUC	ENSMUST00000105590.8|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)	ENSMUST00000067086.14|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)
mm39_v1_chr6_-_52135261_52135332	0.50522	GAUUGUC	ENSMUST00000000964.6|Hoxa1|ENSMUSG00000029844.10|homeobox A1	ENSMUST00000120363.2|Hoxa1|ENSMUSG00000029844.10|homeobox A1
mm39_v1_chr1_+_4878046_4878137	0.50172	GAUUGUC	ENSMUST00000027036.11|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000150971.8|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000119612.9|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000137887.8|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000115529.8|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1
mm39_v1_chr19_+_25483070_25483135	0.489649	GAUUGUC	ENSMUST00000087525.5|Dmrt1|ENSMUSG00000024837.16|doublesex and mab-3 related transcription factor 1
mm39_v1_chr11_+_51989508_51989640	0.48132	GAUUGUC	ENSMUST00000020608.3|Ppp2ca|ENSMUSG00000020349.5|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm39_v1_chr5_-_120726721_120726743	0.480128	GAUUGUC	ENSMUST00000046426.10|Tpcn1|ENSMUSG00000032741.10|two pore channel 1
mm39_v1_chr12_-_102844537_102844709	0.468294	GAUUGUC	ENSMUST00000045652.8|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7	ENSMUST00000223554.2|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7
mm39_v1_chrX_+_135950334_135950415	0.467249	GAUUGUC	ENSMUST00000047852.8|Fam199x|ENSMUSG00000042595.8|family with sequence similarity 199, X-linked
mm39_v1_chr9_-_59393893_59393919	0.447666	GAUUGUC	ENSMUST00000171975.8|Arih1|ENSMUSG00000025234.12|ariadne RBR E3 ubiquitin protein ligase 1
mm39_v1_chr6_-_38853097_38853167	0.438963	GAUUGUC	ENSMUST00000161779.8|Hipk2|ENSMUSG00000061436.16|homeodomain interacting protein kinase 2
mm39_v1_chr14_+_30437556_30437600	0.438788	GAUUGUC	ENSMUST00000054230.12|Sfmbt1|ENSMUSG00000006527.17|Scm-like with four mbt domains 1
mm39_v1_chr9_-_72019109_72019191	0.429269	GAUUGUC	ENSMUST00000183404.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12	ENSMUST00000184783.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12
mm39_v1_chr9_-_116004265_116004333	0.425454	GAUUGUC	ENSMUST00000061101.12|Tgfbr2|ENSMUSG00000032440.14|transforming growth factor, beta receptor II
mm39_v1_chr2_-_60793536_60793595	0.425349	GAUUGUC	ENSMUST00000028347.13|Rbms1|ENSMUSG00000026970.17|RNA binding motif, single stranded interacting protein 1
mm39_v1_chr10_+_59159118_59159196	0.421429	GAUUGUC	ENSMUST00000009789.15|P4ha1|ENSMUSG00000019916.15|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	ENSMUST00000092512.11|P4ha1|ENSMUSG00000019916.15|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	ENSMUST00000105466.3|P4ha1|ENSMUSG00000019916.15|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
mm39_v1_chr3_+_88857929_88857975	0.403991	GAUUGUC	ENSMUST00000186583.7|Ash1l|ENSMUSG00000028053.14|ASH1 like histone lysine methyltransferase
mm39_v1_chr12_+_8971603_8971673	0.40249	GAUUGUC	ENSMUST00000020909.4|Laptm4a|ENSMUSG00000020585.5|lysosomal-associated protein transmembrane 4A
mm39_v1_chr11_+_105480796_105480857	0.398503	GAUUGUC	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr13_-_46118433_46118477	0.397511	GAUUGUC	ENSMUST00000167708.4|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000091628.11|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000180110.9|Atxn1|ENSMUSG00000046876.17|ataxin 1
mm39_v1_chrX_+_47430221_47430295	0.393696	GAUUGUC	ENSMUST00000136348.8|Bcorl1|ENSMUSG00000036959.16|BCL6 co-repressor-like 1
mm39_v1_chr14_-_47805861_47805896	0.385416	GAUUGUC	ENSMUST00000228784.2|Atg14|ENSMUSG00000037526.8|autophagy related 14	ENSMUST00000042988.7|Atg14|ENSMUSG00000037526.8|autophagy related 14
mm39_v1_chrX_+_150127171_150127237	0.377039	GAUUGUC	ENSMUST00000073364.6|Fam120c|ENSMUSG00000025262.9|family with sequence similarity 120, member C
mm39_v1_chr17_+_8653097_8653255	0.36716	GAUUGUC	ENSMUST00000074667.9|T|ENSMUSG00000062327.11|brachyury, T-box transcription factor T
mm39_v1_chr6_-_28261881_28261942	0.366508	GAUUGUC	ENSMUST00000115320.8|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000123098.8|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000115321.9|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000155494.2|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800
mm39_v1_chr10_-_120312374_120312388	0.363554	GAUUGUC	ENSMUST00000072777.14|Hmga2|ENSMUSG00000056758.15|high mobility group AT-hook 2	ENSMUST00000159699.2|Hmga2|ENSMUSG00000056758.15|high mobility group AT-hook 2
mm39_v1_chr17_+_52909721_52909745	0.363231	GAUUGUC	ENSMUST00000039366.11|Kcnh8|ENSMUSG00000035580.11|potassium voltage-gated channel, subfamily H (eag-related), member 8
mm39_v1_chr19_-_60569323_60569468	0.354736	GAUUGUC	ENSMUST00000111460.5|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1	ENSMUST00000166712.9|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1	ENSMUST00000081790.15|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1
mm39_v1_chr6_-_100264439_100264461	0.33757	GAUUGUC	ENSMUST00000101118.4|Rybp|ENSMUSG00000072872.4|RING1 and YY1 binding protein
mm39_v1_chr9_-_62029877_62029900	0.33208	GAUUGUC	ENSMUST00000185675.7|Glce|ENSMUSG00000032252.15|glucuronyl C5-epimerase
mm39_v1_chr2_+_121859025_121859137	0.331488	GAUUGUC	ENSMUST00000028668.8|Eif3j1|ENSMUSG00000027236.9|eukaryotic translation initiation factor 3, subunit J1
mm39_v1_chr5_+_75312939_75312967	0.308524	GAUUGUC	ENSMUST00000202681.4|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide	ENSMUST00000000476.15|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide
mm39_v1_chr15_-_93173032_93173060	0.304673	GAUUGUC	ENSMUST00000057896.5|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000049484.13|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000230063.2|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1
mm39_v1_chr9_-_117081518_117081557	0.303749	GAUUGUC	ENSMUST00000111773.10|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein	ENSMUST00000068962.14|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein	ENSMUST00000044901.14|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein
mm39_v1_chr9_-_122942196_122942280	0.290357	GAUUGUC	ENSMUST00000238520.2|Zdhhc3|ENSMUSG00000025786.18|zinc finger, DHHC domain containing 3	ENSMUST00000147563.9|Zdhhc3|ENSMUSG00000025786.18|zinc finger, DHHC domain containing 3
mm39_v1_chr7_+_109721230_109721342	0.280916	GAUUGUC	ENSMUST00000033326.10|Wee1|ENSMUSG00000031016.10|WEE 1 homolog 1 (S. pombe)
mm39_v1_chr3_+_60408600_60408663	0.273089	GAUUGUC	ENSMUST00000099087.8|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr18_-_73836810_73836877	0.261789	GAUUGUC	ENSMUST00000025393.14|Smad4|ENSMUSG00000024515.14|SMAD family member 4
mm39_v1_chr6_+_95094721_95094938	0.256282	GAUUGUC	ENSMUST00000032107.10|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8	ENSMUST00000119582.3|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8
mm39_v1_chr5_-_92653377_92653523	0.250452	GAUUGUC	ENSMUST00000031377.9|Scarb2|ENSMUSG00000029426.9|scavenger receptor class B, member 2
mm39_v1_chr13_-_97274430_97274450	0.249848	GAUUGUC	ENSMUST00000073456.9|Nsa2|ENSMUSG00000060739.9|NSA2 ribosome biogenesis homolog
mm39_v1_chr8_+_10027707_10027725	0.245122	GAUUGUC	ENSMUST00000139793.8|Abhd13|ENSMUSG00000040396.13|abhydrolase domain containing 13	ENSMUST00000048216.6|Abhd13|ENSMUSG00000040396.13|abhydrolase domain containing 13
mm39_v1_chr19_-_10079091_10079114	0.227711	GAUUGUC	ENSMUST00000025567.9|Fads2|ENSMUSG00000024665.9|fatty acid desaturase 2
mm39_v1_chr17_+_73414977_73415075	0.223601	GAUUGUC	ENSMUST00000130574.4|Lclat1|ENSMUSG00000054469.15|lysocardiolipin acyltransferase 1	ENSMUST00000149064.9|Lclat1|ENSMUSG00000054469.15|lysocardiolipin acyltransferase 1	ENSMUST00000067545.8|Lclat1|ENSMUSG00000054469.15|lysocardiolipin acyltransferase 1
mm39_v1_chr15_-_73056713_73056822	0.218299	GAUUGUC	ENSMUST00000044113.12|Ago2|ENSMUSG00000036698.12|argonaute RISC catalytic subunit 2
mm39_v1_chr17_-_47998953_47999108	0.207381	GAUUGUC	ENSMUST00000113301.2|Tomm6|ENSMUSG00000033475.16|translocase of outer mitochondrial membrane 6	ENSMUST00000113302.10|Tomm6|ENSMUSG00000033475.16|translocase of outer mitochondrial membrane 6
mm39_v1_chr19_-_56996617_56996660	0.205946	GAUUGUC	ENSMUST00000118800.8|Afap1l2|ENSMUSG00000025083.19|actin filament associated protein 1-like 2	ENSMUST00000111584.9|Afap1l2|ENSMUSG00000025083.19|actin filament associated protein 1-like 2	ENSMUST00000122359.8|Afap1l2|ENSMUSG00000025083.19|actin filament associated protein 1-like 2	ENSMUST00000148049.8|Afap1l2|ENSMUSG00000025083.19|actin filament associated protein 1-like 2
mm39_v1_chr1_-_136888118_136888234	0.1998	GAUUGUC	ENSMUST00000192357.6|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2	ENSMUST00000027649.14|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2
mm39_v1_chr5_+_28276353_28276371	0.198797	GAUUGUC	ENSMUST00000059155.11|Insig1|ENSMUSG00000045294.12|insulin induced gene 1
mm39_v1_chr18_+_10325148_10325222	0.194199	GAUUGUC	ENSMUST00000048977.16|Greb1l|ENSMUSG00000042942.19|growth regulation by estrogen in breast cancer-like
mm39_v1_chr12_+_70872266_70872288	0.193463	GAUUGUC	ENSMUST00000057859.9|Frmd6|ENSMUSG00000048285.10|FERM domain containing 6
mm39_v1_chr16_+_72460029_72460077	0.190275	GAUUGUC	ENSMUST00000023600.8|Robo1|ENSMUSG00000022883.12|roundabout guidance receptor 1
mm39_v1_chr6_+_126992549_126992549	0.188875	GAUUGUC	ENSMUST00000000187.7|Fgf6|ENSMUSG00000000183.7|fibroblast growth factor 6
mm39_v1_chr10_-_100323122_100323230	0.188607	GAUUGUC	ENSMUST00000128009.2|Tmtc3|ENSMUSG00000036676.15|transmembrane and tetratricopeptide repeat containing 3	ENSMUST00000134477.2|Tmtc3|ENSMUSG00000036676.15|transmembrane and tetratricopeptide repeat containing 3	ENSMUST00000099318.10|Tmtc3|ENSMUSG00000036676.15|transmembrane and tetratricopeptide repeat containing 3	ENSMUST00000058154.15|Tmtc3|ENSMUSG00000036676.15|transmembrane and tetratricopeptide repeat containing 3
mm39_v1_chr10_-_121462219_121462246	0.186828	GAUUGUC	ENSMUST00000039810.8|Xpot|ENSMUSG00000034667.9|exportin, tRNA (nuclear export receptor for tRNAs)	ENSMUST00000218004.2|Xpot|ENSMUSG00000034667.9|exportin, tRNA (nuclear export receptor for tRNAs)
mm39_v1_chr11_-_95956176_95956214	0.182838	GAUUGUC	ENSMUST00000100528.5|Ube2z|ENSMUSG00000014349.8|ubiquitin-conjugating enzyme E2Z
mm39_v1_chr12_-_70033732_70033776	0.179542	GAUUGUC	ENSMUST00000021467.8|Sav1|ENSMUSG00000021067.9|salvador family WW domain containing 1
mm39_v1_chr12_-_101049884_101049977	0.172334	GAUUGUC	ENSMUST00000048305.10|Ppp4r3a|ENSMUSG00000041846.16|protein phosphatase 4 regulatory subunit 3A	ENSMUST00000163095.9|Ppp4r3a|ENSMUSG00000041846.16|protein phosphatase 4 regulatory subunit 3A
mm39_v1_chr14_-_69969959_69970031	0.168697	GAUUGUC	ENSMUST00000036381.10|Chmp7|ENSMUSG00000034190.10|charged multivesicular body protein 7
mm39_v1_chr1_-_58625431_58625482	0.164074	GAUUGUC	ENSMUST00000161000.2|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B	ENSMUST00000161600.8|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B
mm39_v1_chr2_-_167503416_167503502	0.154714	GAUUGUC	ENSMUST00000125544.3|Gm20431|ENSMUSG00000089739.3|predicted gene 20431	ENSMUST00000006587.7|Tmem189|ENSMUSG00000090213.2|transmembrane protein 189
mm39_v1_chr13_-_103911092_103911139	0.152451	GAUUGUC	ENSMUST00000074616.7|Srek1|ENSMUSG00000032621.9|splicing regulatory glutamine/lysine-rich protein 1
mm39_v1_chr13_+_96679233_96679283	0.143665	GAUUGUC	ENSMUST00000077672.12|Cert1|ENSMUSG00000021669.16|ceramide transporter 1	ENSMUST00000109444.3|Cert1|ENSMUSG00000021669.16|ceramide transporter 1
mm39_v1_chr2_-_5719302_5719349	0.136952	GAUUGUC	ENSMUST00000044009.14|Camk1d|ENSMUSG00000039145.17|calcium/calmodulin-dependent protein kinase ID
mm39_v1_chr18_+_35962832_35962849	0.134758	GAUUGUC	ENSMUST00000060722.8|Cxxc5|ENSMUSG00000046668.10|CXXC finger 5
mm39_v1_chr2_+_30127692_30127759	0.132339	GAUUGUC	ENSMUST00000113654.8|Lrrc8a|ENSMUSG00000007476.19|leucine rich repeat containing 8A VRAC subunit A	ENSMUST00000095078.3|Lrrc8a|ENSMUSG00000007476.19|leucine rich repeat containing 8A VRAC subunit A
mm39_v1_chr2_-_122544535_122544559	0.131107	GAUUGUC	ENSMUST00000005952.11|Slc30a4|ENSMUSG00000005802.13|solute carrier family 30 (zinc transporter), member 4
mm39_v1_chr12_-_73093953_73093953	0.125087	GAUUGUC	ENSMUST00000050029.8|Six1|ENSMUSG00000051367.9|sine oculis-related homeobox 1
mm39_v1_chr10_-_78188153_78188294	0.123846	GAUUGUC	ENSMUST00000001240.12|Agpat3|ENSMUSG00000001211.16|1-acylglycerol-3-phosphate O-acyltransferase 3
mm39_v1_chr7_+_58878490_58878518	0.116401	GAUUGUC	ENSMUST00000202945.4|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A	ENSMUST00000107537.5|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A
mm39_v1_chr4_-_154721288_154721330	0.116223	GAUUGUC	ENSMUST00000030902.13|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105637.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000070313.14|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105636.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105638.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000097759.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000124771.2|Prdm16|ENSMUSG00000039410.17|PR domain containing 16
mm39_v1_chr5_-_113311185_113311217	0.110777	GAUUGUC	ENSMUST00000050125.9|2900026A02Rik|ENSMUSG00000051339.11|RIKEN cDNA 2900026A02 gene
mm39_v1_chrX_-_161426624_161426661	0.10885	GAUUGUC	ENSMUST00000112334.8|Reps2|ENSMUSG00000040855.16|RALBP1 associated Eps domain containing protein 2
mm39_v1_chr5_+_108460475_108460690	0.0975426	GAUUGUC	ENSMUST00000031189.14|Pigg|ENSMUSG00000029263.16|phosphatidylinositol glycan anchor biosynthesis, class G	ENSMUST00000119014.8|Pigg|ENSMUSG00000029263.16|phosphatidylinositol glycan anchor biosynthesis, class G	ENSMUST00000118910.2|Pigg|ENSMUSG00000029263.16|phosphatidylinositol glycan anchor biosynthesis, class G
mm39_v1_chr9_-_99758200_99758245	0.0815639	GAUUGUC	ENSMUST00000054819.10|Sox14|ENSMUSG00000053747.10|SRY (sex determining region Y)-box 14
mm39_v1_chr6_-_29609810_29609886	0.0768563	GAUUGUC	ENSMUST00000012679.15|Tnpo3|ENSMUSG00000012535.15|transportin 3
mm39_v1_chr10_+_80100812_80100867	0.0755091	GAUUGUC	ENSMUST00000105362.8|Dazap1|ENSMUSG00000069565.13|DAZ associated protein 1	ENSMUST00000105361.10|Dazap1|ENSMUSG00000069565.13|DAZ associated protein 1
mm39_v1_chr15_-_13173736_13173791	0.0709995	GAUUGUC	ENSMUST00000036439.6|Cdh6|ENSMUSG00000039385.6|cadherin 6
mm39_v1_chr3_+_31049896_31050017	0.0653877	GAUUGUC	ENSMUST00000108249.9|Prkci|ENSMUSG00000037643.15|protein kinase C, iota
mm39_v1_chr17_-_80203457_80203552	0.0529694	GAUUGUC	ENSMUST00000068282.7|Atl2|ENSMUSG00000059811.14|atlastin GTPase 2	ENSMUST00000112437.8|Atl2|ENSMUSG00000059811.14|atlastin GTPase 2
mm39_v1_chr1_-_171885140_171885169	0.0520755	GAUUGUC	ENSMUST00000059794.4|Nhlh1|ENSMUSG00000051251.4|nescient helix loop helix 1
mm39_v1_chr1_-_135513443_135513555	0.0442111	GAUUGUC	ENSMUST00000067414.13|Nav1|ENSMUSG00000009418.17|neuron navigator 1
mm39_v1_chr15_-_59245998_59246049	0.0414667	GAUUGUC	ENSMUST00000022976.6|Washc5|ENSMUSG00000022350.8|WASH complex subunit 5
mm39_v1_chr16_+_33201164_33201206	0.0397307	GAUUGUC	ENSMUST00000165418.9|Zfp148|ENSMUSG00000022811.18|zinc finger protein 148
mm39_v1_chrX_+_141882590_141882590	0.0264644	GAUUGUC	ENSMUST00000165829.3|Rtl9|ENSMUSG00000085584.4|retrotransposon Gag like 9
mm39_v1_chr2_-_70655997_70656163	0.0242168	GAUUGUC	ENSMUST00000038584.9|Tlk1|ENSMUSG00000041997.17|tousled-like kinase 1
mm39_v1_chr2_-_167473892_167474015	0.020939	GAUUGUC	ENSMUST00000060645.13|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1	ENSMUST00000140216.2|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1	ENSMUST00000151365.8|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1	ENSMUST00000109207.10|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1
mm39_v1_chr11_-_117671436_117671525	0.0135011	GAUUGUC	ENSMUST00000026659.10|Tmc6|ENSMUSG00000025572.19|transmembrane channel-like gene family 6	ENSMUST00000127227.2|Tmc6|ENSMUSG00000025572.19|transmembrane channel-like gene family 6
