mm39_v1_chr6_-_124865155_124865184	4.69642	GCUACAU	ENSMUST00000024044.7|Cd4|ENSMUSG00000023274.15|CD4 antigen
mm39_v1_chr1_-_134006847_134006862	3.88949	GCUACAU	ENSMUST00000020692.7|Btg2|ENSMUSG00000020423.7|BTG anti-proliferation factor 2
mm39_v1_chr4_+_135899678_135899738	3.28255	GCUACAU	ENSMUST00000061721.6|E2f2|ENSMUSG00000018983.10|E2F transcription factor 2
mm39_v1_chr9_+_72439496_72439553	2.8654	GCUACAU	ENSMUST00000163401.9|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7	ENSMUST00000093820.10|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7
mm39_v1_chr13_+_45543208_45543226	2.8143	GCUACAU	ENSMUST00000038275.11|Mylip|ENSMUSG00000038175.11|myosin regulatory light chain interacting protein
mm39_v1_chr12_-_107969853_107969872	2.41435	GCUACAU	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chr6_-_142910094_142910178	2.3217	GCUACAU	ENSMUST00000032421.4|St8sia1|ENSMUSG00000030283.8|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
mm39_v1_chr2_-_118380149_118380168	2.28585	GCUACAU	ENSMUST00000090219.13|Bmf|ENSMUSG00000040093.17|BCL2 modifying factor
mm39_v1_chr4_-_6990774_6990823	2.19552	GCUACAU	ENSMUST00000039987.4|Tox|ENSMUSG00000041272.12|thymocyte selection-associated high mobility group box
mm39_v1_chr3_+_88439616_88439703	2.14114	GCUACAU	ENSMUST00000172699.2|Mex3a|ENSMUSG00000074480.5|mex3 RNA binding family member A
mm39_v1_chr10_+_79984097_79984115	1.89199	GCUACAU	ENSMUST00000099492.10|Midn|ENSMUSG00000035621.14|midnolin	ENSMUST00000042057.12|Midn|ENSMUSG00000035621.14|midnolin
mm39_v1_chr10_-_37014859_37014933	1.76622	GCUACAU	ENSMUST00000092584.6|Marcks|ENSMUSG00000069662.6|myristoylated alanine rich protein kinase C substrate
mm39_v1_chr3_-_103698853_103698879	1.73289	GCUACAU	ENSMUST00000118317.8|Hipk1|ENSMUSG00000008730.18|homeodomain interacting protein kinase 1
mm39_v1_chr11_-_103158190_103158298	1.72187	GCUACAU	ENSMUST00000021324.3|Map3k14|ENSMUSG00000020941.8|mitogen-activated protein kinase kinase kinase 14
mm39_v1_chr4_-_129083335_129083387	1.68559	GCUACAU	ENSMUST00000106061.9|S100pbp|ENSMUSG00000040928.16|S100P binding protein	ENSMUST00000072431.13|S100pbp|ENSMUSG00000040928.16|S100P binding protein
mm39_v1_chr7_+_65759198_65759263	1.67563	GCUACAU	ENSMUST00000036372.8|Chsy1|ENSMUSG00000032640.11|chondroitin sulfate synthase 1
mm39_v1_chr9_-_72019109_72019191	1.65412	GCUACAU	ENSMUST00000183404.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12	ENSMUST00000184783.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12
mm39_v1_chr1_-_180641159_180641197	1.6049	GCUACAU	ENSMUST00000162118.8|H3f3a|ENSMUSG00000060743.13|H3.3 histone A	ENSMUST00000159685.2|H3f3a|ENSMUSG00000060743.13|H3.3 histone A	ENSMUST00000161308.8|H3f3a|ENSMUSG00000060743.13|H3.3 histone A
mm39_v1_chr9_+_32607301_32607417	1.59701	GCUACAU	ENSMUST00000034534.13|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000050797.14|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000184887.2|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain
mm39_v1_chr7_+_125871761_125871791	1.59304	GCUACAU	ENSMUST00000056028.11|Sbk1|ENSMUSG00000042978.12|SH3-binding kinase 1
mm39_v1_chr6_+_134897364_134897394	1.5605	GCUACAU	ENSMUST00000067327.11|Cdkn1b|ENSMUSG00000003031.15|cyclin-dependent kinase inhibitor 1B	ENSMUST00000003115.9|Cdkn1b|ENSMUSG00000003031.15|cyclin-dependent kinase inhibitor 1B
mm39_v1_chr12_+_4967376_4967438	1.50913	GCUACAU	ENSMUST00000045664.7|Atad2b|ENSMUSG00000052812.6|ATPase family, AAA domain containing 2B
mm39_v1_chr13_+_111822712_111822745	1.47815	GCUACAU	ENSMUST00000109272.9|Mier3|ENSMUSG00000032727.15|MIER family member 3
mm39_v1_chr8_-_25592385_25592405	1.4682	GCUACAU	ENSMUST00000064883.14|Plekha2|ENSMUSG00000031557.17|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
mm39_v1_chr6_-_99243455_99243501	1.43311	GCUACAU	ENSMUST00000113326.9|Foxp1|ENSMUSG00000030067.18|forkhead box P1
mm39_v1_chr16_+_95502911_95502960	1.38733	GCUACAU	ENSMUST00000023612.17|Ets2|ENSMUSG00000022895.17|E26 avian leukemia oncogene 2, 3' domain
mm39_v1_chr19_+_60744385_60744432	1.36709	GCUACAU	ENSMUST00000088237.6|Nanos1|ENSMUSG00000072437.5|nanos C2HC-type zinc finger 1
mm39_v1_chr7_-_132415528_132415635	1.34445	GCUACAU	ENSMUST00000097998.9|Fam53b|ENSMUSG00000030956.16|family with sequence similarity 53, member B
mm39_v1_chr17_-_84495364_84495381	1.31621	GCUACAU	ENSMUST00000060366.7|Zfp36l2|ENSMUSG00000045817.9|zinc finger protein 36, C3H type-like 2
mm39_v1_chr4_+_120711974_120712041	1.30083	GCUACAU	ENSMUST00000071093.9|Rims3|ENSMUSG00000032890.18|regulating synaptic membrane exocytosis 3
mm39_v1_chrX_-_141749704_141749730	1.29342	GCUACAU	ENSMUST00000041317.3|Ammecr1|ENSMUSG00000042225.4|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm39_v1_chr14_+_63673843_63673974	1.19906	GCUACAU	ENSMUST00000121288.2|Fam167a|ENSMUSG00000035095.12|family with sequence similarity 167, member A
mm39_v1_chr19_+_25587896_25587919	1.16386	GCUACAU	ENSMUST00000048935.6|Dmrt3|ENSMUSG00000042372.6|doublesex and mab-3 related transcription factor 3
mm39_v1_chr4_+_128548479_128548531	1.15855	GCUACAU	ENSMUST00000030588.13|Phc2|ENSMUSG00000028796.18|polyhomeotic 2	ENSMUST00000136377.8|Phc2|ENSMUSG00000028796.18|polyhomeotic 2
mm39_v1_chr2_-_59955995_59956119	1.14109	GCUACAU	ENSMUST00000112550.8|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr2_-_5719302_5719349	1.13001	GCUACAU	ENSMUST00000044009.14|Camk1d|ENSMUSG00000039145.17|calcium/calmodulin-dependent protein kinase ID
mm39_v1_chr5_-_67585137_67585157	1.10967	GCUACAU	ENSMUST00000169190.5|Bend4|ENSMUSG00000092060.5|BEN domain containing 4
mm39_v1_chr5_+_110283689_110283791	1.0998	GCUACAU	ENSMUST00000200038.2|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains	ENSMUST00000112519.9|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains	ENSMUST00000198633.5|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains	ENSMUST00000014812.13|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains	ENSMUST00000199811.3|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains
mm39_v1_chr4_-_59549314_59549364	1.07901	GCUACAU	ENSMUST00000148331.9|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3	ENSMUST00000030076.12|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3
mm39_v1_chr2_+_153583194_153583214	1.03854	GCUACAU	ENSMUST00000028981.9|Mapre1|ENSMUSG00000027479.15|microtubule-associated protein, RP/EB family, member 1
mm39_v1_chr17_-_45047521_45047561	0.999352	GCUACAU	ENSMUST00000113572.9|Runx2|ENSMUSG00000039153.18|runt related transcription factor 2
mm39_v1_chr9_+_61279640_61279665	0.98954	GCUACAU	ENSMUST00000178113.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000159386.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3
mm39_v1_chr17_+_88748139_88748217	0.985302	GCUACAU	ENSMUST00000112238.9|Foxn2|ENSMUSG00000034998.19|forkhead box N2	ENSMUST00000155640.2|Foxn2|ENSMUSG00000034998.19|forkhead box N2
mm39_v1_chr15_-_79626719_79626763	0.954865	GCUACAU	ENSMUST00000089311.11|Sun2|ENSMUSG00000042524.15|Sad1 and UNC84 domain containing 2	ENSMUST00000046259.14|Sun2|ENSMUSG00000042524.15|Sad1 and UNC84 domain containing 2
mm39_v1_chr7_+_16043502_16043567	0.953852	GCUACAU	ENSMUST00000002152.13|Bbc3|ENSMUSG00000002083.14|BCL2 binding component 3
mm39_v1_chr3_+_65435825_65435876	0.945296	GCUACAU	ENSMUST00000047906.10|Tiparp|ENSMUSG00000034640.10|TCDD-inducible poly(ADP-ribose) polymerase
mm39_v1_chr11_+_95603494_95603529	0.94348	GCUACAU	ENSMUST00000107717.8|Zfp652|ENSMUSG00000075595.10|zinc finger protein 652
mm39_v1_chr6_+_38410848_38410901	0.901507	GCUACAU	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr1_+_133058881_133058992	0.891496	GCUACAU	ENSMUST00000052529.4|Ppp1r15b|ENSMUSG00000046062.6|protein phosphatase 1, regulatory subunit 15B
mm39_v1_chr7_-_73191484_73191503	0.861193	GCUACAU	ENSMUST00000197642.2|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000026895.14|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000169922.9|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2
mm39_v1_chr17_+_50816296_50816431	0.851996	GCUACAU	ENSMUST00000043938.8|Plcl2|ENSMUSG00000038910.8|phospholipase C-like 2
mm39_v1_chr13_-_49121461_49121603	0.851874	GCUACAU	ENSMUST00000060805.7|Fam120a|ENSMUSG00000038014.8|family with sequence similarity 120, member A
mm39_v1_chr4_-_134014525_134014575	0.851173	GCUACAU	ENSMUST00000145006.8|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000105877.9|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000127857.2|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000105876.9|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like
mm39_v1_chr11_+_104498824_104498842	0.805644	GCUACAU	ENSMUST00000021028.5|Itgb3|ENSMUSG00000020689.5|integrin beta 3
mm39_v1_chrX_-_107877909_107877987	0.800414	GCUACAU	ENSMUST00000101283.4|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3	ENSMUST00000150434.8|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3
mm39_v1_chr13_+_119565424_119565498	0.793165	GCUACAU	ENSMUST00000026520.14|Paip1|ENSMUSG00000025451.16|polyadenylate binding protein-interacting protein 1
mm39_v1_chr14_-_69522431_69522561	0.788814	GCUACAU	ENSMUST00000183882.2|Slc25a37|ENSMUSG00000034248.8|solute carrier family 25, member 37	ENSMUST00000037064.5|Slc25a37|ENSMUSG00000034248.8|solute carrier family 25, member 37
mm39_v1_chr4_-_41314877_41314889	0.760861	GCUACAU	ENSMUST00000030145.9|Dcaf12|ENSMUSG00000028436.9|DDB1 and CUL4 associated factor 12
mm39_v1_chr16_-_8610165_8610190	0.739109	GCUACAU	ENSMUST00000160405.8|Usp7|ENSMUSG00000022710.18|ubiquitin specific peptidase 7
mm39_v1_chr8_+_106363141_106363221	0.736676	GCUACAU	ENSMUST00000005841.16|Ctcf|ENSMUSG00000005698.16|CCCTC-binding factor
mm39_v1_chr10_-_84963841_84963900	0.728601	GCUACAU	ENSMUST00000214193.2|Mterf2|ENSMUSG00000049038.4|mitochondrial transcription termination factor 2	ENSMUST00000050813.4|Mterf2|ENSMUSG00000049038.4|mitochondrial transcription termination factor 2	ENSMUST00000217027.2|Mterf2|ENSMUSG00000049038.4|mitochondrial transcription termination factor 2
mm39_v1_chr5_+_86952072_86952135	0.713921	GCUACAU	ENSMUST00000119339.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1	ENSMUST00000120498.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1
mm39_v1_chr4_-_133972890_133972917	0.68874	GCUACAU	ENSMUST00000030644.8|Zfp593|ENSMUSG00000028840.11|zinc finger protein 593
mm39_v1_chr12_-_91556761_91556783	0.684781	GCUACAU	ENSMUST00000021345.14|Gtf2a1|ENSMUSG00000020962.15|general transcription factor II A, 1
mm39_v1_chr2_+_127967951_127967976	0.683616	GCUACAU	ENSMUST00000089634.12|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000019281.14|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000110341.9|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000103211.8|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000103210.2|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)
mm39_v1_chr18_-_73836810_73836877	0.663246	GCUACAU	ENSMUST00000025393.14|Smad4|ENSMUSG00000024515.14|SMAD family member 4
mm39_v1_chr10_-_116417333_116417416	0.652221	GCUACAU	ENSMUST00000218744.2|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105267.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105265.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000167706.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000168036.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000169921.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000020374.6|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2
mm39_v1_chr11_-_106890307_106890367	0.633291	GCUACAU	ENSMUST00000018506.13|Kpna2|ENSMUSG00000018362.15|karyopherin (importin) alpha 2
mm39_v1_chr9_-_75316625_75316668	0.633052	GCUACAU	ENSMUST00000168937.8|Mapk6|ENSMUSG00000042688.17|mitogen-activated protein kinase 6
mm39_v1_chr3_+_101284391_101284421	0.626575	GCUACAU	ENSMUST00000043983.11|Igsf3|ENSMUSG00000042035.12|immunoglobulin superfamily, member 3
mm39_v1_chr1_-_64160557_64160650	0.614329	GCUACAU	ENSMUST00000055001.10|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)	ENSMUST00000114086.8|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chr1_+_138891447_138891539	0.590614	GCUACAU	ENSMUST00000168527.8|Dennd1b|ENSMUSG00000056268.16|DENN/MADD domain containing 1B
mm39_v1_chr10_-_116984386_116984452	0.572792	GCUACAU	ENSMUST00000020381.5|Frs2|ENSMUSG00000020170.5|fibroblast growth factor receptor substrate 2
mm39_v1_chr9_+_100956734_100956815	0.557856	GCUACAU	ENSMUST00000085177.5|Msl2|ENSMUSG00000066415.5|MSL complex subunit 2
mm39_v1_chr4_+_33031342_33031430	0.54643	GCUACAU	ENSMUST00000124992.8|Ube2j1|ENSMUSG00000028277.14|ubiquitin-conjugating enzyme E2J 1
mm39_v1_chr8_-_86281946_86282003	0.54241	GCUACAU	ENSMUST00000034138.7|Dnaja2|ENSMUSG00000031701.7|DnaJ heat shock protein family (Hsp40) member A2
mm39_v1_chr18_-_77801624_77801673	0.539299	GCUACAU	ENSMUST00000074653.6|8030462N17Rik|ENSMUSG00000047466.11|RIKEN cDNA 8030462N17 gene
mm39_v1_chr11_+_97554192_97554240	0.52987	GCUACAU	ENSMUST00000044730.12|Mllt6|ENSMUSG00000038437.12|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6
mm39_v1_chr2_+_75489596_75489662	0.526743	GCUACAU	ENSMUST00000111964.8|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3	ENSMUST00000111962.8|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3	ENSMUST00000111961.8|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3	ENSMUST00000164947.9|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3	ENSMUST00000090792.11|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3
mm39_v1_chr3_-_146518706_146518768	0.515306	GCUACAU	ENSMUST00000102515.10|Prkacb|ENSMUSG00000005034.16|protein kinase, cAMP dependent, catalytic, beta
mm39_v1_chr17_-_43187280_43187368	0.504717	GCUACAU	ENSMUST00000024709.9|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein	ENSMUST00000233476.2|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein
mm39_v1_chr2_+_121859025_121859137	0.502885	GCUACAU	ENSMUST00000028668.8|Eif3j1|ENSMUSG00000027236.9|eukaryotic translation initiation factor 3, subunit J1
mm39_v1_chr18_+_35731658_35731729	0.489703	GCUACAU	ENSMUST00000041314.17|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000236666.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000236020.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000235400.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2
mm39_v1_chr17_-_47922374_47922471	0.489622	GCUACAU	ENSMUST00000024783.9|Bysl|ENSMUSG00000023988.9|bystin-like
mm39_v1_chr4_-_133480922_133480977	0.473736	GCUACAU	ENSMUST00000145664.9|Arid1a|ENSMUSG00000007880.17|AT rich interactive domain 1A (SWI-like)	ENSMUST00000105897.10|Arid1a|ENSMUSG00000007880.17|AT rich interactive domain 1A (SWI-like)
mm39_v1_chr11_+_96941420_96941456	0.467097	GCUACAU	ENSMUST00000090020.13|Osbpl7|ENSMUSG00000038534.20|oxysterol binding protein-like 7
mm39_v1_chr13_-_111626562_111626645	0.460793	GCUACAU	ENSMUST00000091236.11|Gpbp1|ENSMUSG00000032745.19|GC-rich promoter binding protein 1	ENSMUST00000047627.14|Gpbp1|ENSMUSG00000032745.19|GC-rich promoter binding protein 1
mm39_v1_chr10_-_5872386_5872405	0.455283	GCUACAU	ENSMUST00000131996.8|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17	ENSMUST00000064225.14|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17
mm39_v1_chr10_+_40225272_40225385	0.44413	GCUACAU	ENSMUST00000044672.11|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19	ENSMUST00000095743.4|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19
mm39_v1_chr6_-_116170389_116170462	0.435816	GCUACAU	ENSMUST00000088896.10|Tmcc1|ENSMUSG00000030126.18|transmembrane and coiled coil domains 1
mm39_v1_chr8_+_106786190_106786265	0.434843	GCUACAU	ENSMUST00000109308.3|Nfatc3|ENSMUSG00000031902.11|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
mm39_v1_chr5_-_21156766_21156824	0.405068	GCUACAU	ENSMUST00000036489.10|Rsbn1l|ENSMUSG00000039968.10|round spermatid basic protein 1-like
mm39_v1_chr11_+_45742782_45742846	0.40461	GCUACAU	ENSMUST00000109261.11|Clint1|ENSMUSG00000006169.21|clathrin interactor 1	ENSMUST00000109260.3|Clint1|ENSMUSG00000006169.21|clathrin interactor 1
mm39_v1_chr13_+_38010203_38010291	0.39857	GCUACAU	ENSMUST00000128570.9|Rreb1|ENSMUSG00000039087.18|ras responsive element binding protein 1
mm39_v1_chr9_-_107512566_107512584	0.398555	GCUACAU	ENSMUST00000055704.12|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2
mm39_v1_chr11_+_77576981_77577005	0.388858	GCUACAU	ENSMUST00000100802.11|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2	ENSMUST00000181023.2|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2
mm39_v1_chr2_+_33106062_33106096	0.388654	GCUACAU	ENSMUST00000004208.7|Angptl2|ENSMUSG00000004105.9|angiopoietin-like 2
mm39_v1_chr10_-_59787646_59787663	0.361787	GCUACAU	ENSMUST00000020308.5|Ddit4|ENSMUSG00000020108.5|DNA-damage-inducible transcript 4
mm39_v1_chr4_-_153567221_153567268	0.358925	GCUACAU	ENSMUST00000105646.3|Ajap1|ENSMUSG00000039546.10|adherens junction associated protein 1
mm39_v1_chr7_+_120276801_120276868	0.355559	GCUACAU	ENSMUST00000208454.2|Mosmo|ENSMUSG00000046096.8|modulator of smoothened	ENSMUST00000060175.8|Mosmo|ENSMUSG00000046096.8|modulator of smoothened
mm39_v1_chr17_+_29768757_29768773	0.339721	GCUACAU	ENSMUST00000048677.9|Tbc1d22b|ENSMUSG00000042203.9|TBC1 domain family, member 22B	ENSMUST00000150388.3|Gm28052|ENSMUSG00000099329.3|predicted gene, 28052
mm39_v1_chr17_+_24633614_24633671	0.334767	GCUACAU	ENSMUST00000115371.9|Rnps1|ENSMUSG00000034681.18|RNA binding protein with serine rich domain 1	ENSMUST00000088512.13|Rnps1|ENSMUSG00000034681.18|RNA binding protein with serine rich domain 1	ENSMUST00000163717.2|Rnps1|ENSMUSG00000034681.18|RNA binding protein with serine rich domain 1
mm39_v1_chr10_-_82599967_82599991	0.320949	GCUACAU	ENSMUST00000130911.8|Nfyb|ENSMUSG00000020248.19|nuclear transcription factor-Y beta
mm39_v1_chr6_-_97156032_97156120	0.320053	GCUACAU	ENSMUST00000095664.6|Tmf1|ENSMUSG00000030059.16|TATA element modulatory factor 1
mm39_v1_chr12_-_54703281_54703358	0.298479	GCUACAU	ENSMUST00000056228.8|Sptssa|ENSMUSG00000044408.8|serine palmitoyltransferase, small subunit A
mm39_v1_chr11_+_77985486_77985504	0.281897	GCUACAU	ENSMUST00000073705.12|Fam222b|ENSMUSG00000037750.17|family with sequence similarity 222, member B
mm39_v1_chr11_+_77873535_77873649	0.271104	GCUACAU	ENSMUST00000108360.8|Phf12|ENSMUSG00000037791.16|PHD finger protein 12	ENSMUST00000049167.14|Phf12|ENSMUSG00000037791.16|PHD finger protein 12
mm39_v1_chr1_+_134343107_134343146	0.270316	GCUACAU	ENSMUST00000027727.15|Adipor1|ENSMUSG00000026457.15|adiponectin receptor 1
mm39_v1_chr8_+_47192767_47192829	0.260864	GCUACAU	ENSMUST00000034041.9|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2	ENSMUST00000208507.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2	ENSMUST00000207105.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2
mm39_v1_chr2_+_124452493_124452534	0.251151	GCUACAU	ENSMUST00000103239.10|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	ENSMUST00000103240.9|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm39_v1_chr2_+_75662511_75662538	0.250277	GCUACAU	ENSMUST00000047232.14|Agps|ENSMUSG00000042410.17|alkylglycerone phosphate synthase	ENSMUST00000111952.9|Agps|ENSMUSG00000042410.17|alkylglycerone phosphate synthase
mm39_v1_chr4_+_83443777_83443851	0.245486	GCUACAU	ENSMUST00000053414.13|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171	ENSMUST00000231339.2|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171	ENSMUST00000126429.8|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171
mm39_v1_chr8_-_81466126_81466126	0.240448	GCUACAU	ENSMUST00000043359.9|Smarca5|ENSMUSG00000031715.15|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm39_v1_chr16_+_11140740_11140775	0.236991	GCUACAU	ENSMUST00000180792.8|Snx29|ENSMUSG00000071669.15|sorting nexin 29
mm39_v1_chr6_-_39702381_39702413	0.236452	GCUACAU	ENSMUST00000002487.15|Braf|ENSMUSG00000002413.16|Braf transforming gene
mm39_v1_chr11_-_116743898_116743925	0.233204	GCUACAU	ENSMUST00000190993.7|Srsf2|ENSMUSG00000034120.19|serine and arginine-rich splicing factor 2	ENSMUST00000092404.13|Srsf2|ENSMUSG00000034120.19|serine and arginine-rich splicing factor 2
mm39_v1_chr2_-_70655997_70656163	0.221869	GCUACAU	ENSMUST00000038584.9|Tlk1|ENSMUSG00000041997.17|tousled-like kinase 1
mm39_v1_chr11_+_72498029_72498133	0.212175	GCUACAU	ENSMUST00000021148.13|Ube2g1|ENSMUSG00000020794.14|ubiquitin-conjugating enzyme E2G 1	ENSMUST00000138247.8|Ube2g1|ENSMUSG00000020794.14|ubiquitin-conjugating enzyme E2G 1
mm39_v1_chr3_-_119576911_119577037	0.211801	GCUACAU	ENSMUST00000197464.5|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000198403.2|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000029780.12|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2
mm39_v1_chr5_+_146168020_146168195	0.211706	GCUACAU	ENSMUST00000161181.8|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000161652.8|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000031640.15|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000159467.2|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8
mm39_v1_chr14_-_8457069_8457272	0.208915	GCUACAU	ENSMUST00000022257.4|Atxn7|ENSMUSG00000021738.6|ataxin 7
mm39_v1_chr19_+_41471067_41471128	0.195134	GCUACAU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr18_+_36414122_36414204	0.193651	GCUACAU	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chr13_-_49024583_49024642	0.192086	GCUACAU	ENSMUST00000035540.9|Phf2|ENSMUSG00000038025.9|PHD finger protein 2
mm39_v1_chr10_-_128481833_128481881	0.191201	GCUACAU	ENSMUST00000133342.10|Ikzf4|ENSMUSG00000002578.19|IKAROS family zinc finger 4
mm39_v1_chr3_+_14951478_14951488	0.182289	GCUACAU	ENSMUST00000029078.9|Car2|ENSMUSG00000027562.13|carbonic anhydrase 2
mm39_v1_chr3_+_137770813_137770839	0.177807	GCUACAU	ENSMUST00000163080.3|1110002E22Rik|ENSMUSG00000090066.3|RIKEN cDNA 1110002E22 gene
mm39_v1_chr14_-_67309866_67309925	0.168735	GCUACAU	ENSMUST00000225380.2|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha	ENSMUST00000089230.7|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha
mm39_v1_chr19_-_53378990_53379012	0.16467	GCUACAU	ENSMUST00000025997.7|Smndc1|ENSMUSG00000025024.8|survival motor neuron domain containing 1
mm39_v1_chr8_-_32408864_32408913	0.160583	GCUACAU	ENSMUST00000073884.7|Nrg1|ENSMUSG00000062991.10|neuregulin 1	ENSMUST00000238812.2|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chr6_+_92068361_92068371	0.152623	GCUACAU	ENSMUST00000113460.8|Nr2c2|ENSMUSG00000005893.15|nuclear receptor subfamily 2, group C, member 2
mm39_v1_chr15_-_50753061_50753118	0.150254	GCUACAU	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr14_-_124914516_124914539	0.147066	GCUACAU	ENSMUST00000095529.10|Fgf14|ENSMUSG00000025551.14|fibroblast growth factor 14
mm39_v1_chr3_-_62414391_62414448	0.143379	GCUACAU	ENSMUST00000029336.6|Dhx36|ENSMUSG00000027770.6|DEAH (Asp-Glu-Ala-His) box polypeptide 36
mm39_v1_chr3_+_28835425_28835493	0.141874	GCUACAU	ENSMUST00000060500.9|Eif5a2|ENSMUSG00000050192.9|eukaryotic translation initiation factor 5A2
mm39_v1_chr10_+_58282735_58282750	0.140611	GCUACAU	ENSMUST00000003310.7|Ranbp2|ENSMUSG00000003226.8|RAN binding protein 2
mm39_v1_chr4_-_58912678_58912776	0.13876	GCUACAU	ENSMUST00000144512.8|Ecpas|ENSMUSG00000050812.19|Ecm29 proteasome adaptor and scaffold	ENSMUST00000102889.10|Ecpas|ENSMUSG00000050812.19|Ecm29 proteasome adaptor and scaffold	ENSMUST00000055822.15|Ecpas|ENSMUSG00000050812.19|Ecm29 proteasome adaptor and scaffold
mm39_v1_chr9_-_103242096_103242164	0.137849	GCUACAU	ENSMUST00000116517.9|Cdv3|ENSMUSG00000032803.16|carnitine deficiency-associated gene expressed in ventricle 3
mm39_v1_chr11_-_104333059_104333117	0.136542	GCUACAU	ENSMUST00000106977.8|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1	ENSMUST00000106972.8|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1
mm39_v1_chr13_-_54835508_54835623	0.131819	GCUACAU	ENSMUST00000177950.8|Rnf44|ENSMUSG00000034928.17|ring finger protein 44	ENSMUST00000146931.8|Rnf44|ENSMUSG00000034928.17|ring finger protein 44
mm39_v1_chr11_+_87959067_87959115	0.129727	GCUACAU	ENSMUST00000018521.11|Vezf1|ENSMUSG00000018377.11|vascular endothelial zinc finger 1
mm39_v1_chr7_-_37718916_37718991	0.114118	GCUACAU	ENSMUST00000085513.6|Uri1|ENSMUSG00000030421.10|URI1, prefoldin-like chaperone	ENSMUST00000206327.2|Uri1|ENSMUSG00000030421.10|URI1, prefoldin-like chaperone
mm39_v1_chr5_-_25703700_25703841	0.107037	GCUACAU	ENSMUST00000173073.8|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000045291.14|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000173174.2|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C
mm39_v1_chr11_+_19874354_19874375	0.106563	GCUACAU	ENSMUST00000093299.13|Spred2|ENSMUSG00000045671.18|sprouty-related EVH1 domain containing 2
mm39_v1_chr14_+_26359191_26359229	0.101086	GCUACAU	ENSMUST00000022429.9|Arf4|ENSMUSG00000021877.13|ADP-ribosylation factor 4
mm39_v1_chr11_-_74615496_74615530	0.0998556	GCUACAU	ENSMUST00000021091.15|Pafah1b1|ENSMUSG00000020745.16|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm39_v1_chr10_+_127575407_127575457	0.0980603	GCUACAU	ENSMUST00000054287.9|Zbtb39|ENSMUSG00000044617.9|zinc finger and BTB domain containing 39
mm39_v1_chr4_+_108477117_108477195	0.0975832	GCUACAU	ENSMUST00000030320.13|Cc2d1b|ENSMUSG00000028582.15|coiled-coil and C2 domain containing 1B
mm39_v1_chr3_+_94744844_94744884	0.089952	GCUACAU	ENSMUST00000107270.9|Pogz|ENSMUSG00000038902.15|pogo transposable element with ZNF domain
mm39_v1_chr7_-_83533497_83533523	0.0848825	GCUACAU	ENSMUST00000094216.5|Tlnrd1|ENSMUSG00000070462.5|talin rod domain containing 1
mm39_v1_chr15_+_102875229_102875248	0.0697655	GCUACAU	ENSMUST00000001699.8|Hoxc10|ENSMUSG00000022484.8|homeobox C10
mm39_v1_chr13_-_8921732_8921945	0.0679498	GCUACAU	ENSMUST00000054251.13|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37	ENSMUST00000176813.8|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37	ENSMUST00000175958.2|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37
mm39_v1_chr6_+_8209216_8209265	0.0678427	GCUACAU	ENSMUST00000040017.8|Mios|ENSMUSG00000042447.14|meiosis regulator for oocyte development
mm39_v1_chr3_-_95189387_95189387	0.0661921	GCUACAU	ENSMUST00000015855.8|Prune1|ENSMUSG00000015711.9|prune exopolyphosphatase
mm39_v1_chr1_+_82817170_82817239	0.0634989	GCUACAU	ENSMUST00000189220.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000113444.8|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr1_+_167516771_167516806	0.0631664	GCUACAU	ENSMUST00000111377.8|Lmx1a|ENSMUSG00000026686.15|LIM homeobox transcription factor 1 alpha
mm39_v1_chr3_-_108053396_108053475	0.0520801	GCUACAU	ENSMUST00000000001.5|Gnai3|ENSMUSG00000000001.5|guanine nucleotide binding protein (G protein), alpha inhibiting 3
mm39_v1_chr19_+_55730696_55730774	0.0456689	GCUACAU	ENSMUST00000153888.9|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000127233.9|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000061496.17|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000111656.8|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000111657.11|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box
mm39_v1_chr2_-_25471703_25471770	0.042283	GCUACAU	ENSMUST00000114217.3|Ajm1|ENSMUSG00000029419.9|apical junction component 1	ENSMUST00000191602.2|Ajm1|ENSMUSG00000029419.9|apical junction component 1
mm39_v1_chr15_-_103248512_103248527	0.0391233	GCUACAU	ENSMUST00000168828.3|Zfp385a|ENSMUSG00000000552.11|zinc finger protein 385A
mm39_v1_chr14_+_27150750_27150830	0.038313	GCUACAU	ENSMUST00000022450.6|Tasor|ENSMUSG00000040651.10|transcription activation suppressor
mm39_v1_chr15_+_92294762_92294849	0.0345388	GCUACAU	ENSMUST00000169942.10|Pdzrn4|ENSMUSG00000036218.17|PDZ domain containing RING finger 4
mm39_v1_chr11_-_78588194_78588205	0.0318151	GCUACAU	ENSMUST00000142739.8|Nlk|ENSMUSG00000017376.16|nemo like kinase
mm39_v1_chr3_+_95341698_95341739	0.0264345	GCUACAU	ENSMUST00000102749.11|Arnt|ENSMUSG00000015522.19|aryl hydrocarbon receptor nuclear translocator	ENSMUST00000090804.12|Arnt|ENSMUSG00000015522.19|aryl hydrocarbon receptor nuclear translocator	ENSMUST00000107161.8|Arnt|ENSMUSG00000015522.19|aryl hydrocarbon receptor nuclear translocator	ENSMUST00000107160.8|Arnt|ENSMUSG00000015522.19|aryl hydrocarbon receptor nuclear translocator	ENSMUST00000015666.17|Arnt|ENSMUSG00000015522.19|aryl hydrocarbon receptor nuclear translocator
mm39_v1_chr10_+_4561974_4562075	0.0215082	GCUACAU	ENSMUST00000105590.8|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)	ENSMUST00000067086.14|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)
